NEWS

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EpiReport 1.0.1 (2021-02-04)

BUG FIXES

• Allowing NA values in functions
  • plotBar()
  • plotBarGrouped()
  • plotSeasonality()
  • plotTS()
  • plotTSGrouped()

EpiReport 1.0.0 (2021-01-06)

BUG FIXES

• Fixing the issue of mix between zero reporting and missing reports in the Trend and Season plots.

NEW FEATURES

• New and more recent default dataset: DENGUE2019
• Allowing extra stratification for Table 1 on disease stage (i.e. HEPB and HEPC diseases)
• Allowing automatic landscape mode for Table 1 when extra stratification on acute vs. chronic disease is required
• Trend and Season plots are now followed by the list of countries reporting consistently over the study period and included in the plot.
• Making the function shapeECDCFlexTable() more generic and adaptable to any kind of table. Adding an option for having the last row in bold.
• EpiReport::MSCode reference table now have an extra column to allow the article "the" for some country name (e.g. The United Kingdom, The Netherlands)
• Adding the ECDC color palette with the new function EcdcColors()

NEW FUNCTIONS

• In order to allow the user to produce additional outputs in the report and following the ECDC guidelines for presentation of surveillance data, additional generic functions are now available:

  • plotBar(): plot bar graph
  • plotBarGrouped(): plot grouped bar graph
  • plotBarH(): plot horizontal bar graph
  • plotBarGroupedH(): plot grouped horizontal bar graph
  • plotPie(): plot pie chart
  • plotTS(): plot time series
  • plotTSGrouped(): plot grouped time series

• EcdcColors()

• body_replace_gg_at_bkm()

BEHAVIORAL CHANGE

• Reordering of the outputs in the report.
• Renaming the default report name with a shorten name.
• Because of the updated version of the officer and flextable package, existing outputs were not replaced when the report would be re-run. Each output is now correctly replaced using new functions from these packages. WARNING: you may have to update your bookmarks according to these new functions requirements.

MINOR IMPROVEMENTS

• Bookmarks names have been simplified.
• Cleaning the Template accordingly and dropping bookmarks not used
• Improving error messages (e.g. provide clear error message of the study period is incomplete).
• We now have two numbering: one for Figures and on for Tables.
• Numbering of maps in the report is now improved and take into account multiple maps.
• The country "Czech Republic" is now "Czechia" in EpiReport::MSCode reference table.
• Style of outputs caption is improved in the template provided in the package.

DOCUMENTATION

• Vignettes have been updated with the list of bookmarks required in the Microsoft Word template.

DEPRECATED

• The functions plotAgeGender() and plotAge() are still available in the package but they are discouraged. Instead, the user is encouraged to use the functions plotBarGrouped() and plotBar() respectively.

EpiReport 0.1.1 (2020-05-11)

BUG FIXES

• adapting to new R and R packages versions

EpiReport 0.1.0 (2018-11-14)

• First release of the EpiReport package on CRAN!