Package: TransPhylo
Version: 1.4.10
Date: 2023-10-26
Title: Inference of Transmission Tree from a Dated Phylogeny
Authors@R: c(person("Xavier","Didelot",
                  email="xavier.didelot@gmail.com",
                  comment = c(ORCID = "0000-0003-1885-500X"),
                  role=c("aut", "cre")),
             person("Yuanwei", "Xu",
	           email = "y.xu@bham.ac.uk",
		         role = c("ctb")))
Maintainer: Xavier Didelot <xavier.didelot@gmail.com>
Description: Inference of transmission tree from a dated phylogeny.
        Includes methods to simulate and analyse outbreaks. The
        methodology is described in Didelot et al. (2014)
        <doi:10.1093/molbev/msu121>, Didelot et al. (2017)
        <doi:10.1093/molbev/msw275>.
License: GPL (>=2)
Depends: R (>= 3.0.0)
Imports: Rcpp (>= 0.12.8), stats, graphics, ape
Suggests: knitr, testthat, purrr, coda, grDevices, lattice, rmarkdown
LinkingTo: Rcpp
Encoding: UTF-8
RoxygenNote: 7.2.3
SystemRequirements: C++11
VignetteBuilder: knitr
NeedsCompilation: yes
Repository: https://epiverse-connect.r-universe.dev
Date/Publication: 2023-09-27 08:28:27 UTC
RemoteUrl: https://github.com/xavierdidelot/TransPhylo
RemoteRef: HEAD
RemoteSha: 0759ed77a01fd3d228b2e91d104c9cc5aee96f0d
Packaged: 2026-10-01 10:08:05 UTC; root
Author: Xavier Didelot [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-1885-500X>),
  Yuanwei Xu [ctb]