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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "TransPhylo" in publications use:'
type: software
title: 'TransPhylo: Inference of Transmission Tree from a Dated Phylogeny'
version: 1.4.10
doi: 10.1093/molbev/msw275
identifiers:
- type: doi
  value: 10.32614/CRAN.package.TransPhylo
abstract: Inference of transmission tree from a dated phylogeny. Includes methods
  to simulate and analyse outbreaks. The methodology is described in Didelot et al.
  (2014) <https://doi.org/10.1093/molbev/msu121>, Didelot et al. (2017) <https://doi.org/10.1093/molbev/msw275>.
authors:
- family-names: Didelot
  given-names: Xavier
  email: xavier.didelot@gmail.com
  orcid: https://orcid.org/0000-0003-1885-500X
preferred-citation:
  type: article
  title: Genomic infectious disease epidemiology in partially sampled and ongoing
    outbreaks
  authors:
  - name: Didelot
  - name: Xavier
  - name: Fraser
  - name: Christophe
  - name: Gardy
  - name: Jennifer
  - name: Colijn
  - name: Caroline
  journal: Molecular Biology and Evolution
  doi: 10.1093/molbev/msw275
  url: https://academic.oup.com/mbe/article/34/4/997/2919386
  volume: '34'
  year: '2017'
  start: '997'
  end: '1007'
repository: https://epiverse-connect.r-universe.dev
commit: 0759ed77a01fd3d228b2e91d104c9cc5aee96f0d
date-released: '2023-10-26'
contact:
- family-names: Didelot
  given-names: Xavier
  email: xavier.didelot@gmail.com
  orcid: https://orcid.org/0000-0003-1885-500X