{
  "_id": "6aca4f5cfe5cc25786e870b3",
  "Title": "Spatial and Network Based Individual Level Models for Epidemics",
  "Package": "EpiILM",
  "Version": "1.5.2",
  "Date": "2020-09-30",
  "Author": "Vineetha Warriyar. K. V., Waleed Almutiry, and Rob Deardon",
  "Maintainer": "Waleed Almutiry <wkmtierie@qu.edu.sa>",
  "Description": "Provides tools for simulating from discrete-time\nindividual level models for infectious disease data analysis.\nThis epidemic model class contains spatial and contact-network\nbased models with two disease types: Susceptible-Infectious\n(SI) and Susceptible-Infectious-Removed (SIR).",
  "License": "GPL (>= 2)",
  "URL": "https://github.com/waleedalmutiry/EpiILM",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-10-10 14:14:50 UTC",
    "User": "root"
  },
  "Repository": "https://epiverse-connect.r-universe.dev",
  "Date/Publication": "2020-09-30 11:53:23 UTC",
  "RemoteUrl": "https://github.com/waleedalmutiry/EpiILM",
  "RemoteRef": "HEAD",
  "RemoteSha": "a22caac0e2f5af69fe202b2c750e237cbe6e295b",
  "_user": "epiverse-connect",
  "_type": "src",
  "_file": "EpiILM_1.5.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/4e65184c071dac21ab4ba9ec3b3015a2733be0c83665400df7f2259f9801d366",
  "_filesize": 873612,
  "_sha256": "4e65184c071dac21ab4ba9ec3b3015a2733be0c83665400df7f2259f9801d366",
  "_expires": "2027-01-18T14:44:42.000Z",
  "_created": "2026-10-10T14:14:50.000Z",
  "_published": "2026-10-10T14:44:44.300Z",
  "_buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38058605461",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 114232891490,
      "time": 131,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11670949962"
    },
    {
      "job": 114232891484,
      "time": 130,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11671809141"
    },
    {
      "job": 114232891391,
      "time": 128,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11672840867"
    },
    {
      "job": 114232891433,
      "time": 115,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11672511316"
    },
    {
      "job": 114232891457,
      "time": 128,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11672229537"
    },
    {
      "job": 114232891400,
      "time": 327,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11672931745"
    },
    {
      "job": 114232891384,
      "time": 84,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11672858207"
    },
    {
      "job": 114232891494,
      "time": 320,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11672419357"
    },
    {
      "job": 114232120757,
      "time": 239,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11671009516"
    },
    {
      "job": 114232891448,
      "time": 79,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11672755944"
    },
    {
      "job": 114232891517,
      "time": 223,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11672251870"
    },
    {
      "job": 114232891453,
      "time": 144,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11672810902"
    },
    {
      "job": 114232891546,
      "time": 116,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11672376418"
    },
    {
      "job": 114232891511,
      "time": 197,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11670969908"
    },
    {
      "job": 114232891597,
      "time": 108,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11671084717"
    }
  ],
  "_upstream": "https://github.com/waleedalmutiry/EpiILM",
  "_commit": {
    "id": "a22caac0e2f5af69fe202b2c750e237cbe6e295b",
    "author": "Waleed Almutiry <walee2001d@hotmail.co.uk>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update README.md",
    "time": 1601466803
  },
  "_maintainer": {
    "name": "Waleed Almutiry",
    "email": "wkmtierie@qu.edu.sa",
    "login": "waleedalmutiry",
    "description": "I am an assistant professor of Applied Statistics specialized in Biostatistics, Epidemiology, and Data Scientist.",
    "uuid": 18523406
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "coda",
      "role": "Depends"
    },
    {
      "package": "adaptMCMC",
      "role": "Depends"
    },
    {
      "package": "LaplacesDemon",
      "role": "Depends"
    },
    {
      "package": "graphics",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Depends"
    },
    {
      "package": "utils",
      "role": "Depends"
    },
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    }
  ],
  "_owner": "waleedalmutiry",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 6,
  "_contributors": [
    {
      "user": "waleedalmutiry",
      "count": 29,
      "uuid": 18523406
    },
    {
      "user": "vineetha-warriyar",
      "count": 1,
      "uuid": 52970742
    }
  ],
  "_userbio": {
    "uuid": 114159794,
    "type": "organization",
    "name": "Epiverse-CONNECT",
    "followers": 6
  },
  "_downloads": {
    "count": 490,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/EpiILM"
  },
  "_devurl": "https://github.com/waleedalmutiry/epiilm",
  "_searchresults": 6,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/EpiILM.html",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/waleedalmutiry/epiilm",
  "_realowner": "waleedalmutiry",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0",
      "date": "2017-04-14"
    },
    {
      "version": "1.1",
      "date": "2017-04-17"
    },
    {
      "version": "1.2",
      "date": "2017-04-21"
    },
    {
      "version": "1.3",
      "date": "2017-12-07"
    },
    {
      "version": "1.4",
      "date": "2018-02-03"
    },
    {
      "version": "1.4.1",
      "date": "2018-02-18"
    },
    {
      "version": "1.4.2",
      "date": "2018-03-09"
    },
    {
      "version": "1.5",
      "date": "2020-03-12"
    },
    {
      "version": "1.5.1",
      "date": "2020-06-29"
    },
    {
      "version": "1.5.2",
      "date": "2020-09-30"
    },
    {
      "version": "1.5.3",
      "date": "2025-09-26"
    },
    {
      "version": "1.5.4",
      "date": "2026-09-28"
    }
  ],
  "_exports": [
    "as.epidata",
    "epiBR0",
    "epidata",
    "epidic",
    "epilike",
    "epimcmc",
    "pred.epi"
  ],
  "_datasets": [
    {
      "name": "tswv",
      "title": "Tomato Spotted Wilt Virus (TSWV) data",
      "object": "tswv",
      "file": "tswv.txt.gz",
      "class": [
        "data.frame"
      ],
      "fields": [
        "x",
        "y",
        "inftime",
        "removaltime"
      ],
      "rows": 520,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "EpiILM-package",
      "title": "'EpiILM': Spatial and Network Based Individual Level Models for Epidemics",
      "topics": [
        "EpiILM-package",
        "EpiILM"
      ]
    },
    {
      "page": "as.epidata",
      "title": "Discrete Time level information of an Epidemic",
      "topics": [
        "as.epidata"
      ]
    },
    {
      "page": "epiBR0",
      "title": "Basic reproduction number (R0)",
      "topics": [
        "epiBR0"
      ]
    },
    {
      "page": "epidata",
      "title": "Simulates epidemic for the specified model type and parameters",
      "topics": [
        "epidata"
      ]
    },
    {
      "page": "epidic",
      "title": "Deviance Information Criterion (DIC)",
      "topics": [
        "epidic"
      ]
    },
    {
      "page": "epilike",
      "title": "Calculates the log likelihood",
      "topics": [
        "epilike"
      ]
    },
    {
      "page": "epimcmc",
      "title": "Monte Carlo Simulation",
      "topics": [
        "epimcmc"
      ]
    },
    {
      "page": "plot.epidata",
      "title": "S3 method to provide some graphics of epidemic.",
      "topics": [
        "plot.epidata"
      ]
    },
    {
      "page": "plot.epimcmc",
      "title": "Plot the output of 'epimcmc' object",
      "topics": [
        "plot.epimcmc"
      ]
    },
    {
      "page": "plot.pred.epi",
      "title": "S3 method to provide plots of posterior predictive check.",
      "topics": [
        "plot.pred.epi"
      ]
    },
    {
      "page": "pred.epi",
      "title": "Posterior predictive check.",
      "topics": [
        "pred.epi"
      ]
    },
    {
      "page": "summary.epimcmc",
      "title": "Summary method for 'epimcmc' objects",
      "topics": [
        "summary.epimcmc"
      ]
    },
    {
      "page": "tswv",
      "title": "Tomato Spotted Wilt Virus (TSWV) data",
      "topics": [
        "tswv"
      ]
    }
  ],
  "_readme": "https://github.com/waleedalmutiry/EpiILM/raw/HEAD/README.md",
  "_rundeps": [
    "adaptMCMC",
    "coda",
    "LaplacesDemon",
    "lattice",
    "Matrix",
    "ramcmc",
    "Rcpp",
    "RcppArmadillo"
  ],
  "_vignettes": [
    {
      "source": "Predict.Rnw",
      "filename": "Predict.pdf",
      "title": "Posterior Predictive Forecasting and Model Assessment",
      "engine": "utils::Sweave",
      "headings": [
        "Posterior Predictive Forecasting",
        "Model Selection"
      ],
      "created": "2020-02-23 03:28:09",
      "modified": "2020-09-30 11:48:35",
      "commits": 3
    }
  ],
  "_score": 4.477121254719663,
  "_indexed": false,
  "_nocasepkg": "epiilm",
  "_universes": [
    "epiverse-connect"
  ],
  "_indexurl": "https://waleedalmutiry.r-universe.dev/EpiILM",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.5.2",
      "date": "2026-10-10T14:17:03.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "a22caac0e2f5af69fe202b2c750e237cbe6e295b",
      "fileid": "https://r2.ropensci.org/36c0c0cafdd3f7e53ebcc21eb7756ecd0ec1d1e89b9ced7a0901bba3d759b8a9",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38058605461"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.5.2",
      "date": "2026-10-10T14:16:57.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "a22caac0e2f5af69fe202b2c750e237cbe6e295b",
      "fileid": "https://r2.ropensci.org/0c9055dfbac60d228ab4de0eb4c7c5e6f7d1138de84a241316a7014fb6ac1d48",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38058605461"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.5.2",
      "date": "2026-10-10T14:17:02.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "a22caac0e2f5af69fe202b2c750e237cbe6e295b",
      "fileid": "https://r2.ropensci.org/ff911e1a89b508cd839669bda5be776caff4b94bc5406916846e13cfde4011aa",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38058605461"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.5.2",
      "date": "2026-10-10T14:16:39.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "a22caac0e2f5af69fe202b2c750e237cbe6e295b",
      "fileid": "https://r2.ropensci.org/68f29c359ac2a13e9189b1831c038c52b8c4622b16fdd84f945cd6b5f3af4163",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38058605461"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.5.2",
      "date": "2026-10-10T14:41:47.000Z",
      "arch": "aarch64",
      "commit": "a22caac0e2f5af69fe202b2c750e237cbe6e295b",
      "fileid": "https://r2.ropensci.org/934889a227bc74e08c7ad6f7853237cd842d1f8b0be6fbf83d8155f15ef2928b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38058605461"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.5.2",
      "date": "2026-10-10T14:40:39.000Z",
      "arch": "x86_64",
      "commit": "a22caac0e2f5af69fe202b2c750e237cbe6e295b",
      "fileid": "https://r2.ropensci.org/9f3e8f0ac8ebee2f0c34b37391a676ca4bd65d9666b1c2ef14876c99e66d93a6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38058605461"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.5.2",
      "date": "2026-10-10T14:40:21.000Z",
      "arch": "aarch64",
      "commit": "a22caac0e2f5af69fe202b2c750e237cbe6e295b",
      "fileid": "https://r2.ropensci.org/0967895861e950dd79e3007869f08103bb51c4df1c75ea610cf6c1fd8694f7de",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38058605461"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.5.2",
      "date": "2026-10-10T14:42:15.000Z",
      "arch": "x86_64",
      "commit": "a22caac0e2f5af69fe202b2c750e237cbe6e295b",
      "fileid": "https://r2.ropensci.org/c10ff378e1edd7aa59a8fabc0a6a930c796b9482e8dcedf4d63e76f7c09043ba",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38058605461"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.5.2",
      "date": "2026-10-10T14:16:40.000Z",
      "arch": "emscripten",
      "commit": "a22caac0e2f5af69fe202b2c750e237cbe6e295b",
      "fileid": "https://r2.ropensci.org/afed52ed68e9e0625a123181a21937efbe7e9418eb7898c8730e0b2c4c0f08aa",
      "status": "success",
      "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38058605461"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.5.2",
      "date": "2026-10-10T14:18:16.000Z",
      "arch": "aarch64",
      "commit": "a22caac0e2f5af69fe202b2c750e237cbe6e295b",
      "fileid": "https://r2.ropensci.org/db6fa3b5e2090fe575d149c8645b251bd34b5ae6b49c981ad635c7e3cfb751dd",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38058605461"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.5.2",
      "date": "2026-10-10T14:16:04.000Z",
      "arch": "x86_64",
      "commit": "a22caac0e2f5af69fe202b2c750e237cbe6e295b",
      "fileid": "https://r2.ropensci.org/99fca1bb62e7a9f74772f80e837552aaaa3569f9f6497f04276228768a558a61",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38058605461"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.5.2",
      "date": "2026-10-10T14:16:13.000Z",
      "arch": "x86_64",
      "commit": "a22caac0e2f5af69fe202b2c750e237cbe6e295b",
      "fileid": "https://r2.ropensci.org/4f8caa05dc93e7f1c721130e2e446b88273da7cb223b60aa72e3dce1fe3bf6cd",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38058605461"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.5.2",
      "date": "2026-10-10T14:17:54.000Z",
      "arch": "aarch64",
      "commit": "a22caac0e2f5af69fe202b2c750e237cbe6e295b",
      "fileid": "https://r2.ropensci.org/3cfb945653089086eaa01580563d6e7164882da4cd378a3d969b3634d43e5ea2",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38058605461"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.5.2",
      "date": "2026-10-10T14:16:09.000Z",
      "arch": "x86_64",
      "commit": "a22caac0e2f5af69fe202b2c750e237cbe6e295b",
      "fileid": "https://r2.ropensci.org/1dd9d25417b382bcc7b22fb8ce393a21d4de91d5875097cce39d1e89aa01fb2f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38058605461"
    }
  ]
}