{ "_id": "6acdfcb2a14063b82c3ae018", "Package": "outbreaks", "Title": "A Collection of Disease Outbreak Data", "Version": "1.9.0.9000", "Authors@R": "c(person(\"Thibaut\", \"Jombart\", email = \"thibaut.jombart@gmail.com\", role = \"aut\"),\nperson(\"Simon\", \"Frost\", role = \"aut\"),\nperson(\"Pierre\", \"Nouvellet\", role = \"aut\"),\nperson(\"Finlay\", \"Campbell\", email = \"finlaycampbell93@gmail.com\", role=c(\"aut\", \"cre\")),\nperson(\"Bertrand\", \"Sudre\", email = \"bertrand.sudre@edc.europa.eu\", role=\"aut\"),\nperson(\"Sang Woo\", \"Park\", email = \"parksw3@mcmaster.ca\", role = \"ctb\"),\nperson(\"Juliet R.C.\", \"Pulliam\", email = \"pulliam@sun.ac.za\", role = \"ctb\"),\nperson(\"Jakob\", \"Schumacher\", email = \"jakob.schumacher@web.de\", role = \"ctb\"),\nperson(\"Eric\", \"Brown\", email = \"eb@ericebrown.com\", role = \"ctb\")\n)", "Description": "Empirical or simulated disease outbreak data, provided\neither as RData or as text files.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.1.1", "URL": "https://github.com/reconverse/outbreaks", "BugReports": "https://github.com/reconverse/outbreaks/issues", "Repository": "https://epiverse-connect.r-universe.dev", "Date/Publication": "2022-12-08 11:45:20 UTC", "RemoteUrl": "https://github.com/reconhub/outbreaks", "RemoteRef": "HEAD", "RemoteSha": "3e0ad8fd1317a44760dfdc2d7370e178f3438f36", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-13 09:33:11 UTC", "User": "root" }, "Author": "Thibaut Jombart [aut],\nSimon Frost [aut],\nPierre Nouvellet [aut],\nFinlay Campbell [aut, cre],\nBertrand Sudre [aut],\nSang Woo Park [ctb],\nJuliet R.C. Pulliam [ctb],\nJakob Schumacher [ctb],\nEric Brown [ctb]", "Maintainer": "Finlay Campbell ", "_user": "epiverse-connect", "_type": "src", "_file": "outbreaks_1.9.0.9000.tar.gz", "_fileid": "https://r2.ropensci.org/5b702416b69ffae7d8d551e1416e11ff99ad1c11d7bed55e625d664debe9562c", "_filesize": 1497461, "_sha256": "5b702416b69ffae7d8d551e1416e11ff99ad1c11d7bed55e625d664debe9562c", "_expires": "2027-01-21T09:41:04.000Z", "_created": "2026-10-13T09:33:11.000Z", "_published": "2026-10-13T09:41:06.409Z", "_buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38376790372", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 115228363542, "time": 115, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11801153675" }, { "job": 115228363325, "time": 113, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11801034376" }, { "job": 115228363375, "time": 96, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11802430143" }, { "job": 115228363387, "time": 104, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11801663983" }, { "job": 115227219663, "time": 164, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11801732789" }, { "job": 115228363287, "time": 83, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11801099254" }, { "job": 115228363333, "time": 68, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11801473067" }, { "job": 115228363602, "time": 71, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11801957008" }, { "job": 115228363288, "time": 91, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11801243553" } ], "_upstream": "https://github.com/reconhub/outbreaks", "_commit": { "id": "3e0ad8fd1317a44760dfdc2d7370e178f3438f36", "author": "Thibaut Jombart ", "committer": "GitHub ", "message": "Merge pull request #42 from reconverse/license\n\nchanging to MIT license", "time": 1670499920 }, "_maintainer": { "name": "Finlay Campbell", "email": "finlaycampbell93@gmail.com", "login": "finlaycampbell", "description": "Operationalising analytics for health emergencies", "uuid": 18398011 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0.0", "role": "Depends" }, { "package": "testthat", "role": "Suggests" }, { "package": "covr", "role": "Suggests" }, { "package": "ape", "role": "Suggests" }, { "package": "incidence", "role": "Suggests" } ], "_owner": "reconhub", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 54, "_contributors": [ { "user": "thibautjombart", "count": 91, "uuid": 10757154 }, { "user": "eebrown", "count": 34, "uuid": 32402513 }, { "user": "finlaycampbell", "count": 23, "uuid": 18398011 }, { "user": "sdwfrost", "count": 16, "uuid": 2164195 }, { "user": "jakobschumacher", "count": 8, "uuid": 7360912 }, { "user": "timtaylor", "count": 7, "uuid": 43499035 }, { "user": "jrcpulliam", "count": 4, "uuid": 4070920 } ], "_userbio": { "uuid": 114159794, "type": "organization", "name": "Epiverse-CONNECT", "followers": 6 }, "_downloads": { "count": 910, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/outbreaks" }, "_devurl": "https://github.com/reconverse/outbreaks", "_searchresults": 482, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/outbreaks.html", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_homeurl": "https://github.com/reconverse/outbreaks", "_realowner": "reconverse", "_cranurl": false, "_releases": [ { "version": "1.0.0", "date": "2016-10-31" }, { "version": "1.1.0", "date": "2016-11-23" }, { "version": "1.2.0", "date": "2017-02-05" }, { "version": "1.3.0", "date": "2017-05-10" }, { "version": "1.5.0", "date": "2019-01-21" }, { "version": "1.9.0", "date": "2020-09-28" } ], "_exports": [], "_datasets": [ { "name": "covid19_england_nhscalls_2020", "title": "Potential COVID19 cases reported through NHS pathways", "object": "covid19_england_nhscalls_2020", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "site_type", "date", "sex", "age", "ccg_code", "ccg_name", "count", "postcode", "nhs_region", "day", "weekday" ], "rows": 253670, "table": true, "tojson": true }, { "name": "dengue_fais_2011", "title": "Dengue on the island of Fais, Micronesia, 2011", "object": "dengue_fais_2011", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "onset_date", "nr", "value" ], "rows": 57, "table": true, "tojson": true }, { "name": "dengue_yap_2011", "title": "Dengue on the Yap Main Islands, Micronesia, 2011", "object": "dengue_yap_2011", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "onset_date", "nr", "value" ], "rows": 185, "table": true, "tojson": true }, { "name": "ebola_kikwit_1995", "title": "Ebola in Kikwit, Democratic Republic of the Congo, 1995", "object": "ebola_kikwit_1995", "class": [ "data.frame" ], "fields": [ "date", "onset", "death", "reporting" ], "rows": 192, "table": true, "tojson": true }, { "name": "ebola_sierraleone_2014", "title": "Ebola in Sierra Leone, 2014", "object": "ebola_sierraleone_2014", "class": [ "data.frame" ], "fields": [ "id", "age", "sex", "status", "date_of_onset", "date_of_sample", "district", "chiefdom" ], "rows": 11903, "table": true, "tojson": true }, { "name": "ebola_sim", "title": "Simulated Ebola outbreak", "object": "ebola_sim", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "ebola_sim_clean", "title": "Simulated Ebola outbreak", "object": "ebola_sim_clean", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "fluH7N9_china_2013", "title": "Influenza A H7N9 in China, 2013", "object": "fluH7N9_china_2013", "class": [ "data.frame" ], "fields": [ "case_id", "date_of_onset", "date_of_hospitalisation", "date_of_outcome", "outcome", "gender", "age", "province" ], "rows": 136, "table": true, "tojson": true }, { "name": "influenza_england_1978_school", "title": "Influenza in a boarding school in England, 1978", "object": "influenza_england_1978_school", "class": [ "data.frame" ], "fields": [ "date", "in_bed", "convalescent" ], "rows": 14, "table": true, "tojson": true }, { "name": "measles_hagelloch_1861", "title": "Measles in Hagelloch, Germany, 1861", "object": "measles_hagelloch_1861", "class": [ "data.frame" ], "fields": [ "case_ID", "infector", "date_of_prodrome", "date_of_rash", "date_of_death", "age", "gender", "family_ID", "class", "complications", "x_loc", "y_loc" ], "rows": 188, "table": true, "tojson": true }, { "name": "mers_korea_2015", "title": "Middle East respiratory syndrome in South Korea, 2015", "object": "mers_korea_2015", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "nipah_malaysia", "title": "Nipah in Malaysia and Sinagapore, 1997-1999", "object": "nipah_malaysia", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "date", "perak", "negeri_sembilan", "selangor", "singapore" ], "rows": 49, "table": true, "tojson": true }, { "name": "norovirus_derbyshire_2001_school", "title": "Norovirus in a primary school in Derbyshire, England, 2001", "object": "norovirus_derbyshire_2001_school", "class": [ "data.frame" ], "fields": [ "class", "day_absent", "start_illness", "end_illness", "day_vomiting" ], "rows": 492, "table": true, "tojson": true }, { "name": "rabies_car_2003", "title": "Dog Rabies in Central African Republic, 2003-2012", "object": "rabies_car_2003", "class": [ "list" ], "fields": [], "table": false, "tojson": false }, { "name": "s_enteritidis_pt59", "title": "Salmonella Enteritidis PT59 outbreak", "object": "s_enteritidis_pt59", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "sars_canada_2003", "title": "Severe Acute Respiratory Syndrome in Canada, 2003", "object": "sars_canada_2003", "class": [ "data.frame" ], "fields": [ "date", "cases_travel", "cases_household", "cases_healthcare", "cases_other" ], "rows": 110, "table": true, "tojson": true }, { "name": "sarscov2_who_2019", "title": "SARS-CoV-2 World Health Organization Situation Reports 2019 Outbreak (COVID-19)", "object": "sarscov2_who_2019", "class": [ "data.frame" ], "fields": [], "rows": 92, "table": true, "tojson": true }, { "name": "smallpox_abakaliki_1967", "title": "Smallpox in Abakaliki, Nigeria, 1967", "object": "smallpox_abakaliki_1967", "class": [ "data.frame" ], "fields": [ "case_ID", "date_of_onset", "age", "gender", "vaccinated", "vaccscar", "ftc", "compound" ], "rows": 32, "table": true, "tojson": true }, { "name": "varicella_sim_berlin", "title": "Simulated Varicella outbreak", "object": "varicella_sim_berlin", "class": [ "data.frame" ], "fields": [ "sex", "ethnicity", "firstname", "lastname", "age", "center1", "arrival1", "leave1", "center2", "arrival2", "leave2", "onset", "disease" ], "rows": 500, "table": true, "tojson": true }, { "name": "zika_girardot_2015", "title": "Zika in Girardot, Colombia, 2015", "object": "zika_girardot_2015", "class": [ "data.frame" ], "fields": [ "date", "cases" ], "rows": 93, "table": true, "tojson": true }, { "name": "zika_sanandres_2015", "title": "Zika in San Andres, Colombia, 2015", "object": "zika_sanandres_2015", "class": [ "data.frame" ], "fields": [ "date", "cases" ], "rows": 101, "table": true, "tojson": true }, { "name": "zika_yap_2007", "title": "Zika on the Yap Main Islands, Micronesia, 2007", "object": "zika_yap_2007", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "onset_date", "nr", "value" ], "rows": 29, "table": true, "tojson": true } ], "_help": [ { "page": "covid19_england_nhscalls_2020", "title": "Potential COVID19 cases reported through NHS pathways", "topics": [ "covid19_england_nhscalls_2020" ] }, { "page": "dengue_fais_2011", "title": "Dengue on the island of Fais, Micronesia, 2011", "topics": [ "dengue_fais_2011" ] }, { "page": "dengue_yap_2011", "title": "Dengue on the Yap Main Islands, Micronesia, 2011", "topics": [ "dengue_yap_2011" ] }, { "page": "ebola_kikwit_1995", "title": "Ebola in Kikwit, Democratic Republic of the Congo, 1995", "topics": [ "ebola_kikwit_1995" ] }, { "page": "ebola_sierraleone_2014", "title": "Ebola in Sierra Leone, 2014", "topics": [ "ebola_sierraleone_2014" ] }, { "page": "ebola_sim", "title": "Simulated Ebola outbreak", "topics": [ "ebola_sim", "ebola_sim_clean" ] }, { "page": "fluH7N9_china_2013", "title": "Influenza A H7N9 in China, 2013", "topics": [ "fluH7N9_china_2013" ] }, { "page": "influenza_england_1978_school", "title": "Influenza in a boarding school in England, 1978", "topics": [ "influenza_england_1978_school" ] }, { "page": "measles_hagelloch_1861", "title": "Measles in Hagelloch, Germany, 1861", "topics": [ "measles_hagelloch_1861" ] }, { "page": "mers_korea_2015", "title": "Middle East respiratory syndrome in South Korea, 2015", "topics": [ "mers_korea_2015" ] }, { "page": "nipah_malaysia", "title": "Nipah in Malaysia and Sinagapore, 1997-1999", "topics": [ "nipah_malaysia" ] }, { "page": "norovirus_derbyshire_2001_school", "title": "Norovirus in a primary school in Derbyshire, England, 2001", "topics": [ "norovirus_derbyshire_2001_school" ] }, { "page": "rabies_car_2003", "title": "Dog Rabies in Central African Republic, 2003-2012", "topics": [ "rabies_car_2003" ] }, { "page": "s_enteritidis_pt59", "title": "Salmonella Enteritidis PT59 outbreak", "topics": [ "s_enteritidis_pt59" ] }, { "page": "sars_canada_2003", "title": "Severe Acute Respiratory Syndrome in Canada, 2003", "topics": [ "sars_canada_2003" ] }, { "page": "sarscov2_who_2019", "title": "SARS-CoV-2 World Health Organization Situation Reports 2019 Outbreak (COVID-19)", "topics": [ "sarscov2_who_2019" ] }, { "page": "smallpox_abakaliki_1967", "title": "Smallpox in Abakaliki, Nigeria, 1967", "topics": [ "smallpox_abakaliki_1967" ] }, { "page": "varicella_sim_berlin", "title": "Simulated Varicella outbreak", "topics": [ "varicella_sim_berlin" ] }, { "page": "zika_girardot_2015", "title": "Zika in Girardot, Colombia, 2015", "topics": [ "zika_girardot_2015" ] }, { "page": "zika_sanandres_2015", "title": "Zika in San Andres, Colombia, 2015", "topics": [ "zika_sanandres_2015" ] }, { "page": "zika_yap_2007", "title": "Zika on the Yap Main Islands, Micronesia, 2007", "topics": [ "zika_yap_2007" ] } ], "_readme": "https://github.com/reconhub/outbreaks/raw/HEAD/README.md", "_rundeps": [], "_score": 5.89256205278148, "_indexed": false, "_nocasepkg": "outbreaks", "_universes": [ "epiverse-connect" ], "_indexurl": "https://reconverse.r-universe.dev/outbreaks", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.9.0.9000", "date": "2026-10-13T09:35:02.000Z", "distro": "resolute", "commit": "3e0ad8fd1317a44760dfdc2d7370e178f3438f36", "fileid": "https://r2.ropensci.org/86a4d31a91d725eaa9a93df03e83ae862fda1640fa283d1669e1027ff7cb1a48", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38376790372" }, { "r": "4.6.1", "os": "linux", "version": "1.9.0.9000", "date": "2026-10-13T09:35:05.000Z", "distro": "resolute", "commit": "3e0ad8fd1317a44760dfdc2d7370e178f3438f36", "fileid": "https://r2.ropensci.org/b84d5c1e4b903dbd370db480c53afcf05da43b390c64c5c7118e8289ed90c814", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38376790372" }, { "r": "4.5.3", "os": "mac", "version": "1.9.0.9000", "date": "2026-10-13T09:40:32.000Z", "commit": "3e0ad8fd1317a44760dfdc2d7370e178f3438f36", "fileid": "https://r2.ropensci.org/d2d946e120f410bcc0b334e6bb0315f8d40ea939917c21beb105fe87ac9f8ce6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38376790372" }, { "r": "4.6.1", "os": "mac", "version": "1.9.0.9000", "date": "2026-10-13T09:39:02.000Z", "commit": "3e0ad8fd1317a44760dfdc2d7370e178f3438f36", "fileid": "https://r2.ropensci.org/545ed4d3091712b883d98eff903fd61b359679d53ee81515967840215b0d5117", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38376790372" }, { "r": "4.6.0", "os": "wasm", "version": "1.9.0.9000", "date": "2026-10-13T09:34:56.000Z", "commit": "3e0ad8fd1317a44760dfdc2d7370e178f3438f36", "fileid": "https://r2.ropensci.org/1a2cbc628e4206cd41cd327685a1b2f7926e9e3f15a7616ed73f010c8bfb2498", "status": "success", "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38376790372" }, { "r": "4.7.0", "os": "win", "version": "1.9.0.9000", "date": "2026-10-13T09:34:13.000Z", "commit": "3e0ad8fd1317a44760dfdc2d7370e178f3438f36", "fileid": "https://r2.ropensci.org/ca39ce47fd5a6b535f8ebce95364bc0b21a83153ee2df0723ace5f7209f7f5b3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38376790372" }, { "r": "4.5.3", "os": "win", "version": "1.9.0.9000", "date": "2026-10-13T09:34:23.000Z", "commit": "3e0ad8fd1317a44760dfdc2d7370e178f3438f36", "fileid": "https://r2.ropensci.org/f5028bf6a9c03b081b7830504109e4fbf8e3932e0ac68d6f3c5734264a038b47", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38376790372" }, { "r": "4.6.1", "os": "win", "version": "1.9.0.9000", "date": "2026-10-13T09:34:42.000Z", "commit": "3e0ad8fd1317a44760dfdc2d7370e178f3438f36", "fileid": "https://r2.ropensci.org/f2d9914869d2725e52365cd1218989cdc0a6edfd83cfa438bee443fadc83e8ce", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/epiverse-connect/actions/runs/38376790372" } ] }