{"pairID":"001_002","label":"SNPs","pAvg":0.90902,"pSD":0.27326,"pScaled":1,"pRank":1,"nSamples":500,"individualID.1":1,"individualID.2":2,"transmission":true,"snpDist":1,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1986-09-11 04:55:40","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1989-05-22 08:46:29","sampleDiff":658,"infectionDiff":155,"infectionDiffY":0.42466,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"1","snpClose":true} {"pairID":"001_003","label":"SNPs","pAvg":0.01762,"pSD":0.00787,"pScaled":0.0556,"pRank":8,"nSamples":500,"individualID.1":1,"individualID.2":3,"transmission":false,"snpDist":7,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1990-12-11 19:24:08","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1998-10-30 22:42:57","sampleDiff":4107,"infectionDiff":1708,"infectionDiffY":4.67945,"timeCat":"5","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"001_004","label":"SNPs","pAvg":0.82271,"pSD":0.37679,"pScaled":0.47207,"pRank":1,"nSamples":275,"individualID.1":1,"individualID.2":4,"transmission":false,"snpDist":0,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1987-02-03 23:11:47","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1988-01-10 13:17:28","sampleDiff":160,"infectionDiff":301,"infectionDiffY":0.82466,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"001_005","label":"SNPs","pAvg":0.78439,"pSD":0.39966,"pScaled":0.47877,"pRank":2,"nSamples":221,"individualID.1":1,"individualID.2":5,"transmission":false,"snpDist":1,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1986-10-28 21:54:09","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1988-09-21 13:32:09","sampleDiff":415,"infectionDiff":203,"infectionDiffY":0.55616,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"001_006","label":"SNPs","pAvg":0.01287,"pSD":0.00317,"pScaled":0.00822,"pRank":16,"nSamples":50,"individualID.1":1,"individualID.2":6,"transmission":false,"snpDist":3,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":1823,"infectionDiff":2266,"infectionDiffY":6.20822,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"001_007","label":"SNPs","pAvg":0.74833,"pSD":0.42822,"pScaled":0.25193,"pRank":1,"nSamples":194,"individualID.1":1,"individualID.2":7,"transmission":false,"snpDist":0,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1987-07-15 05:58:16","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1988-02-23 12:34:50","sampleDiff":204,"infectionDiff":462,"infectionDiffY":1.26575,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"001_008","label":"SNPs","pAvg":0.04747,"pSD":0.01034,"pScaled":0.24629,"pRank":3,"nSamples":500,"individualID.1":1,"individualID.2":8,"transmission":false,"snpDist":4,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1986-12-18 07:49:26","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1990-04-14 16:45:48","sampleDiff":985,"infectionDiff":253,"infectionDiffY":0.69315,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"001_009","label":"SNPs","pAvg":0.00769,"pSD":0.00215,"pScaled":0.03427,"pRank":9,"nSamples":500,"individualID.1":1,"individualID.2":9,"transmission":false,"snpDist":9,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":4346,"infectionDiff":2949,"infectionDiffY":8.07945,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"001_010","label":"SNPs","pAvg":0.90045,"pSD":0.29894,"pScaled":0.6524,"pRank":1,"nSamples":500,"individualID.1":1,"individualID.2":10,"transmission":false,"snpDist":2,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":1797,"infectionDiff":1990,"infectionDiffY":5.45205,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"001_011","label":"SNPs","pAvg":0.78877,"pSD":0.40167,"pScaled":0.31522,"pRank":1,"nSamples":230,"individualID.1":1,"individualID.2":11,"transmission":false,"snpDist":2,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1988-04-18 02:31:21","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1991-10-25 12:28:14","sampleDiff":1544,"infectionDiff":740,"infectionDiffY":2.0274,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"001_012","label":"SNPs","pAvg":0.42759,"pSD":0.48857,"pScaled":0.10718,"pRank":7,"nSamples":86,"individualID.1":1,"individualID.2":12,"transmission":false,"snpDist":1,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1988-04-12 22:57:51","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1988-09-04 19:08:48","sampleDiff":398,"infectionDiff":735,"infectionDiffY":2.0137,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"001_013","label":"SNPs","pAvg":0.58051,"pSD":0.47303,"pScaled":0.20097,"pRank":4,"nSamples":113,"individualID.1":1,"individualID.2":13,"transmission":false,"snpDist":1,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1987-03-23 16:58:33","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1987-07-30 23:29:57","sampleDiff":-3,"infectionDiff":349,"infectionDiffY":0.95616,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":true} {"pairID":"001_014","label":"SNPs","pAvg":0.90089,"pSD":0.29764,"pScaled":0.49491,"pRank":1,"nSamples":500,"individualID.1":1,"individualID.2":14,"transmission":false,"snpDist":2,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":2377,"infectionDiff":2526,"infectionDiffY":6.92055,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"001_015","label":"SNPs","pAvg":0.72533,"pSD":0.43731,"pScaled":0.28435,"pRank":2,"nSamples":176,"individualID.1":1,"individualID.2":15,"transmission":false,"snpDist":2,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1988-08-20 08:24:18","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1992-08-15 08:05:31","sampleDiff":1839,"infectionDiff":864,"infectionDiffY":2.36712,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"001_016","label":"SNPs","pAvg":0.01636,"pSD":0.00537,"pScaled":0.04077,"pRank":12,"nSamples":500,"individualID.1":1,"individualID.2":16,"transmission":false,"snpDist":4,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1989-04-18 04:17:39","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1995-12-16 04:24:53","sampleDiff":3057,"infectionDiff":1105,"infectionDiffY":3.0274,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"001_017","label":"SNPs","pAvg":0.01086,"pSD":0.00276,"pScaled":0.01514,"pRank":15,"nSamples":500,"individualID.1":1,"individualID.2":17,"transmission":false,"snpDist":5,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":3515,"infectionDiff":2298,"infectionDiffY":6.29589,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"001_018","label":"SNPs","pAvg":0.00451,"pSD":0.00102,"pScaled":0.00512,"pRank":33,"nSamples":500,"individualID.1":1,"individualID.2":18,"transmission":false,"snpDist":4,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":2270,"infectionDiff":2723,"infectionDiffY":7.46027,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"001_019","label":"SNPs","pAvg":0.02024,"pSD":0.00408,"pScaled":0.01838,"pRank":6,"nSamples":50,"individualID.1":1,"individualID.2":19,"transmission":false,"snpDist":3,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1987-12-12 09:17:01","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1991-09-26 03:18:54","sampleDiff":1515,"infectionDiff":613,"infectionDiffY":1.67945,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"001_020","label":"SNPs","pAvg":0.6509,"pSD":0.44616,"pScaled":0.20393,"pRank":3,"nSamples":131,"individualID.1":1,"individualID.2":20,"transmission":false,"snpDist":1,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1987-03-30 17:23:41","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1994-08-15 09:04:39","sampleDiff":2569,"infectionDiff":356,"infectionDiffY":0.97534,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"1","snpClose":true} {"pairID":"001_021","label":"SNPs","pAvg":0.01012,"pSD":0.00244,"pScaled":0.00966,"pRank":25,"nSamples":500,"individualID.1":1,"individualID.2":21,"transmission":false,"snpDist":3,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":3715,"infectionDiff":2720,"infectionDiffY":7.45205,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"001_022","label":"SNPs","pAvg":0.02002,"pSD":0.00637,"pScaled":0.03905,"pRank":11,"nSamples":500,"individualID.1":1,"individualID.2":22,"transmission":false,"snpDist":3,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1989-06-06 04:07:23","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1991-10-22 14:29:51","sampleDiff":1541,"infectionDiff":1154,"infectionDiffY":3.16164,"timeCat":"4","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"001_023","label":"SNPs","pAvg":0.00921,"pSD":0.00211,"pScaled":0.0041,"pRank":45,"nSamples":50,"individualID.1":1,"individualID.2":23,"transmission":false,"snpDist":5,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":4503,"infectionDiff":4488,"infectionDiffY":12.29589,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"001_024","label":"SNPs","pAvg":0.01564,"pSD":0.00703,"pScaled":0.01209,"pRank":11,"nSamples":50,"individualID.1":1,"individualID.2":24,"transmission":false,"snpDist":4,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1991-02-07 21:59:42","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1992-10-05 23:05:30","sampleDiff":1891,"infectionDiff":1766,"infectionDiffY":4.83836,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"001_025","label":"SNPs","pAvg":0.56186,"pSD":0.49401,"pScaled":0.12748,"pRank":4,"nSamples":113,"individualID.1":1,"individualID.2":25,"transmission":false,"snpDist":1,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1989-07-09 14:49:21","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1990-01-24 23:05:50","sampleDiff":906,"infectionDiff":1188,"infectionDiffY":3.25479,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":true} {"pairID":"001_026","label":"SNPs","pAvg":0.01688,"pSD":0.00365,"pScaled":0.00593,"pRank":11,"nSamples":50,"individualID.1":1,"individualID.2":26,"transmission":false,"snpDist":4,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":4107,"infectionDiff":3785,"infectionDiffY":10.36986,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"001_027","label":"SNPs","pAvg":0.01038,"pSD":0.00259,"pScaled":0.00371,"pRank":35,"nSamples":50,"individualID.1":1,"individualID.2":27,"transmission":false,"snpDist":3,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":4280,"infectionDiff":4374,"infectionDiffY":11.98356,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"001_028","label":"SNPs","pAvg":0.00929,"pSD":0.00237,"pScaled":0.00259,"pRank":41,"nSamples":50,"individualID.1":1,"individualID.2":28,"transmission":false,"snpDist":3,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":3497,"infectionDiff":3199,"infectionDiffY":8.76438,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"001_029","label":"SNPs","pAvg":0.00841,"pSD":0.00346,"pScaled":0.02076,"pRank":12,"nSamples":500,"individualID.1":1,"individualID.2":29,"transmission":false,"snpDist":3,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1990-12-27 23:28:20","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1992-03-01 23:20:54","sampleDiff":1673,"infectionDiff":1724,"infectionDiffY":4.72329,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"001_030","label":"SNPs","pAvg":0.01715,"pSD":0.00394,"pScaled":0.01199,"pRank":11,"nSamples":50,"individualID.1":1,"individualID.2":30,"transmission":false,"snpDist":4,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":1748,"infectionDiff":2205,"infectionDiffY":6.0411,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"001_031","label":"SNPs","pAvg":0.00911,"pSD":0.00408,"pScaled":0.01503,"pRank":15,"nSamples":500,"individualID.1":1,"individualID.2":31,"transmission":false,"snpDist":3,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1991-01-03 16:49:07","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1991-07-17 03:37:35","sampleDiff":1444,"infectionDiff":1731,"infectionDiffY":4.74247,"timeCat":"5","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"001_032","label":"SNPs","pAvg":0.00539,"pSD":0.00136,"pScaled":0.00367,"pRank":21,"nSamples":50,"individualID.1":1,"individualID.2":32,"transmission":false,"snpDist":6,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":3178,"infectionDiff":2151,"infectionDiffY":5.89315,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"001_033","label":"SNPs","pAvg":0.00746,"pSD":0.00174,"pScaled":0.0034,"pRank":22,"nSamples":50,"individualID.1":1,"individualID.2":33,"transmission":false,"snpDist":6,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":3724,"infectionDiff":4056,"infectionDiffY":11.11233,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"001_034","label":"SNPs","pAvg":0.00305,"pSD":0.00144,"pScaled":0.01024,"pRank":12,"nSamples":500,"individualID.1":1,"individualID.2":34,"transmission":false,"snpDist":7,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":2747,"infectionDiff":1770,"infectionDiffY":4.84932,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"001_035","label":"SNPs","pAvg":0.00463,"pSD":0.00106,"pScaled":0.0012,"pRank":40,"nSamples":50,"individualID.1":1,"individualID.2":35,"transmission":false,"snpDist":3,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":3687,"infectionDiff":2853,"infectionDiffY":7.81644,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"001_036","label":"SNPs","pAvg":0.01067,"pSD":0.00227,"pScaled":0.00288,"pRank":42,"nSamples":50,"individualID.1":1,"individualID.2":36,"transmission":false,"snpDist":3,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":3486,"infectionDiff":3664,"infectionDiffY":10.03836,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"001_037","label":"SNPs","pAvg":0.01576,"pSD":0.00395,"pScaled":0.01589,"pRank":21,"nSamples":500,"individualID.1":1,"individualID.2":37,"transmission":false,"snpDist":7,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":3873,"infectionDiff":3186,"infectionDiffY":8.72877,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"001_038","label":"SNPs","pAvg":0.01699,"pSD":0.004,"pScaled":0.02017,"pRank":16,"nSamples":500,"individualID.1":1,"individualID.2":38,"transmission":false,"snpDist":8,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":2935,"infectionDiff":2831,"infectionDiffY":7.75616,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"001_039","label":"SNPs","pAvg":0.01699,"pSD":0.004,"pScaled":0.03665,"pRank":7,"nSamples":500,"individualID.1":1,"individualID.2":39,"transmission":false,"snpDist":9,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":3100,"infectionDiff":2276,"infectionDiffY":6.23562,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"001_040","label":"SNPs","pAvg":0.0087,"pSD":0.00172,"pScaled":0.00778,"pRank":37,"nSamples":500,"individualID.1":1,"individualID.2":40,"transmission":false,"snpDist":6,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":3508,"infectionDiff":3920,"infectionDiffY":10.73973,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"001_041","label":"SNPs","pAvg":0.01472,"pSD":0.00346,"pScaled":0.03822,"pRank":10,"nSamples":500,"individualID.1":1,"individualID.2":41,"transmission":false,"snpDist":7,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":4358,"infectionDiff":2120,"infectionDiffY":5.80822,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"001_042","label":"SNPs","pAvg":0.00837,"pSD":0.00315,"pScaled":0.00309,"pRank":15,"nSamples":50,"individualID.1":1,"individualID.2":42,"transmission":false,"snpDist":3,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":1761,"infectionDiff":1772,"infectionDiffY":4.85479,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"001_043","label":"SNPs","pAvg":0.00483,"pSD":0.00114,"pScaled":0.00651,"pRank":27,"nSamples":500,"individualID.1":1,"individualID.2":43,"transmission":false,"snpDist":7,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":4483,"infectionDiff":2539,"infectionDiffY":6.95616,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"001_044","label":"SNPs","pAvg":0.00487,"pSD":0.001,"pScaled":0.00131,"pRank":26,"nSamples":50,"individualID.1":1,"individualID.2":44,"transmission":false,"snpDist":4,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":2103,"infectionDiff":2440,"infectionDiffY":6.68493,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"001_045","label":"SNPs","pAvg":0.00859,"pSD":0.00213,"pScaled":0.0052,"pRank":28,"nSamples":50,"individualID.1":1,"individualID.2":45,"transmission":false,"snpDist":7,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":3882,"infectionDiff":3431,"infectionDiffY":9.4,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"001_046","label":"SNPs","pAvg":0.01544,"pSD":0.00328,"pScaled":0.00893,"pRank":17,"nSamples":50,"individualID.1":1,"individualID.2":46,"transmission":false,"snpDist":5,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":2787,"infectionDiff":2385,"infectionDiffY":6.53425,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"001_047","label":"SNPs","pAvg":0.00572,"pSD":0.0012,"pScaled":0.00123,"pRank":40,"nSamples":50,"individualID.1":1,"individualID.2":47,"transmission":false,"snpDist":5,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":2733,"infectionDiff":3116,"infectionDiffY":8.53699,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"001_048","label":"SNPs","pAvg":0.00924,"pSD":0.00232,"pScaled":0.00407,"pRank":24,"nSamples":50,"individualID.1":1,"individualID.2":48,"transmission":false,"snpDist":6,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":3016,"infectionDiff":2650,"infectionDiffY":7.26027,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"001_049","label":"SNPs","pAvg":0.00838,"pSD":0.00157,"pScaled":0.00549,"pRank":19,"nSamples":50,"individualID.1":1,"individualID.2":49,"transmission":false,"snpDist":6,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":2751,"infectionDiff":2269,"infectionDiffY":6.21644,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"001_050","label":"SNPs","pAvg":0.00187,"pSD":0.00052,"pScaled":0.00815,"pRank":15,"nSamples":500,"individualID.1":1,"individualID.2":50,"transmission":false,"snpDist":4,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":2605,"infectionDiff":1941,"infectionDiffY":5.31781,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"001_051","label":"SNPs","pAvg":0.00498,"pSD":0.0012,"pScaled":0.00236,"pRank":42,"nSamples":50,"individualID.1":1,"individualID.2":51,"transmission":false,"snpDist":4,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":2520,"infectionDiff":2908,"infectionDiffY":7.96712,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"001_052","label":"SNPs","pAvg":0.01773,"pSD":0.00463,"pScaled":0.00665,"pRank":18,"nSamples":50,"individualID.1":1,"individualID.2":52,"transmission":false,"snpDist":5,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":4352,"infectionDiff":3936,"infectionDiffY":10.78356,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"001_053","label":"SNPs","pAvg":0.01528,"pSD":0.00342,"pScaled":0.0102,"pRank":12,"nSamples":50,"individualID.1":1,"individualID.2":53,"transmission":false,"snpDist":7,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":3040,"infectionDiff":3400,"infectionDiffY":9.31507,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"001_054","label":"SNPs","pAvg":0.00787,"pSD":0.00214,"pScaled":0.00205,"pRank":23,"nSamples":50,"individualID.1":1,"individualID.2":54,"transmission":false,"snpDist":7,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":4211,"infectionDiff":4325,"infectionDiffY":11.84932,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"001_055","label":"SNPs","pAvg":0.00459,"pSD":0.00109,"pScaled":0.00141,"pRank":36,"nSamples":50,"individualID.1":1,"individualID.2":55,"transmission":false,"snpDist":7,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":3194,"infectionDiff":3592,"infectionDiffY":9.8411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"001_056","label":"SNPs","pAvg":0.01781,"pSD":0.00371,"pScaled":0.00426,"pRank":15,"nSamples":50,"individualID.1":1,"individualID.2":56,"transmission":false,"snpDist":7,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":3618,"infectionDiff":3677,"infectionDiffY":10.07397,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"001_057","label":"SNPs","pAvg":0.01777,"pSD":0.00378,"pScaled":0.00355,"pRank":17,"nSamples":50,"individualID.1":1,"individualID.2":57,"transmission":false,"snpDist":8,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":4181,"infectionDiff":4327,"infectionDiffY":11.85479,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"001_058","label":"SNPs","pAvg":0.01699,"pSD":0.004,"pScaled":0.01676,"pRank":17,"nSamples":500,"individualID.1":1,"individualID.2":58,"transmission":false,"snpDist":9,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":4466,"infectionDiff":4015,"infectionDiffY":11,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"001_059","label":"SNPs","pAvg":0.00559,"pSD":0.00138,"pScaled":0.00804,"pRank":25,"nSamples":500,"individualID.1":1,"individualID.2":59,"transmission":false,"snpDist":9,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":3846,"infectionDiff":2479,"infectionDiffY":6.79178,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"001_060","label":"SNPs","pAvg":0.00905,"pSD":0.00177,"pScaled":0.00439,"pRank":34,"nSamples":50,"individualID.1":1,"individualID.2":60,"transmission":false,"snpDist":7,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":4507,"infectionDiff":4657,"infectionDiffY":12.7589,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"001_061","label":"SNPs","pAvg":0.00524,"pSD":0.00131,"pScaled":0.00994,"pRank":18,"nSamples":500,"individualID.1":1,"individualID.2":61,"transmission":false,"snpDist":6,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":4300,"infectionDiff":3875,"infectionDiffY":10.61644,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"001_062","label":"SNPs","pAvg":0.00562,"pSD":0.00139,"pScaled":0.00149,"pRank":34,"nSamples":50,"individualID.1":1,"individualID.2":62,"transmission":false,"snpDist":5,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":3035,"infectionDiff":2779,"infectionDiffY":7.6137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"001_063","label":"SNPs","pAvg":0.00365,"pSD":0.001,"pScaled":0.00176,"pRank":25,"nSamples":50,"individualID.1":1,"individualID.2":63,"transmission":false,"snpDist":6,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":2467,"infectionDiff":2574,"infectionDiffY":7.05205,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"001_064","label":"SNPs","pAvg":0.00846,"pSD":0.00218,"pScaled":0.00321,"pRank":16,"nSamples":50,"individualID.1":1,"individualID.2":64,"transmission":false,"snpDist":8,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":3250,"infectionDiff":3556,"infectionDiffY":9.74247,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"001_065","label":"SNPs","pAvg":0.01023,"pSD":0.0023,"pScaled":0.0079,"pRank":15,"nSamples":50,"individualID.1":1,"individualID.2":65,"transmission":false,"snpDist":7,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":3258,"infectionDiff":3489,"infectionDiffY":9.5589,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"001_066","label":"SNPs","pAvg":0.00943,"pSD":0.0024,"pScaled":0.00249,"pRank":26,"nSamples":50,"individualID.1":1,"individualID.2":66,"transmission":false,"snpDist":8,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":3405,"infectionDiff":3636,"infectionDiffY":9.96164,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"001_067","label":"SNPs","pAvg":0.01699,"pSD":0.00347,"pScaled":0.00429,"pRank":27,"nSamples":50,"individualID.1":1,"individualID.2":67,"transmission":false,"snpDist":9,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":4527,"infectionDiff":4721,"infectionDiffY":12.93425,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"001_068","label":"SNPs","pAvg":0.00531,"pSD":0.00141,"pScaled":0.00116,"pRank":66,"nSamples":50,"individualID.1":1,"individualID.2":68,"transmission":false,"snpDist":4,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":4133,"infectionDiff":4373,"infectionDiffY":11.98082,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"001_069","label":"SNPs","pAvg":0.00443,"pSD":0.00108,"pScaled":0.00142,"pRank":39,"nSamples":50,"individualID.1":1,"individualID.2":69,"transmission":false,"snpDist":5,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":4177,"infectionDiff":4400,"infectionDiffY":12.05479,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"001_070","label":"SNPs","pAvg":0.01021,"pSD":0.00228,"pScaled":0.00316,"pRank":25,"nSamples":50,"individualID.1":1,"individualID.2":70,"transmission":false,"snpDist":6,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":2714,"infectionDiff":2817,"infectionDiffY":7.71781,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"001_071","label":"SNPs","pAvg":0.01012,"pSD":0.00244,"pScaled":0.0103,"pRank":24,"nSamples":500,"individualID.1":1,"individualID.2":71,"transmission":false,"snpDist":10,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":4233,"infectionDiff":3076,"infectionDiffY":8.4274,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"001_072","label":"SNPs","pAvg":0.00162,"pSD":0.00048,"pScaled":0.00049,"pRank":39,"nSamples":50,"individualID.1":1,"individualID.2":72,"transmission":false,"snpDist":6,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":2674,"infectionDiff":2995,"infectionDiffY":8.20548,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"001_073","label":"SNPs","pAvg":0.00345,"pSD":0.00107,"pScaled":0.00254,"pRank":31,"nSamples":50,"individualID.1":1,"individualID.2":73,"transmission":false,"snpDist":6,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":3755,"infectionDiff":3746,"infectionDiffY":10.26301,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"001_074","label":"SNPs","pAvg":0.00175,"pSD":0.00051,"pScaled":0.00096,"pRank":28,"nSamples":50,"individualID.1":1,"individualID.2":74,"transmission":false,"snpDist":5,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":3595,"infectionDiff":3126,"infectionDiffY":8.56438,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"001_075","label":"SNPs","pAvg":0.00031,"pSD":0.00096,"pScaled":0.00133,"pRank":66,"nSamples":500,"individualID.1":1,"individualID.2":75,"transmission":false,"snpDist":11,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":4261,"infectionDiff":4700,"infectionDiffY":12.87671,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"001_076","label":"SNPs","pAvg":0.00729,"pSD":0.002,"pScaled":0.00179,"pRank":51,"nSamples":50,"individualID.1":1,"individualID.2":76,"transmission":false,"snpDist":4,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":4496,"infectionDiff":4373,"infectionDiffY":11.98082,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"001_077","label":"SNPs","pAvg":0.0084,"pSD":0.00234,"pScaled":0.00186,"pRank":34,"nSamples":50,"individualID.1":1,"individualID.2":77,"transmission":false,"snpDist":3,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":3649,"infectionDiff":4088,"infectionDiffY":11.2,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"001_078","label":"SNPs","pAvg":0.00867,"pSD":0.00167,"pScaled":0.00192,"pRank":48,"nSamples":50,"individualID.1":1,"individualID.2":78,"transmission":false,"snpDist":3,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":4339,"infectionDiff":4401,"infectionDiffY":12.05753,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"001_079","label":"SNPs","pAvg":0.00189,"pSD":0.00051,"pScaled":0.00095,"pRank":38,"nSamples":50,"individualID.1":1,"individualID.2":79,"transmission":false,"snpDist":8,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":3748,"infectionDiff":3685,"infectionDiffY":10.09589,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"001_080","label":"SNPs","pAvg":0.002,"pSD":0.00056,"pScaled":0.01458,"pRank":15,"nSamples":500,"individualID.1":1,"individualID.2":80,"transmission":false,"snpDist":8,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":3757,"infectionDiff":3617,"infectionDiffY":9.90959,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"001_081","label":"SNPs","pAvg":0.00329,"pSD":0.00116,"pScaled":0.00082,"pRank":58,"nSamples":50,"individualID.1":1,"individualID.2":81,"transmission":false,"snpDist":3,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":4473,"infectionDiff":4784,"infectionDiffY":13.10685,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"001_082","label":"SNPs","pAvg":0.0052,"pSD":0.00131,"pScaled":0.00113,"pRank":60,"nSamples":50,"individualID.1":1,"individualID.2":82,"transmission":false,"snpDist":5,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":4477,"infectionDiff":4861,"infectionDiffY":13.31781,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"001_083","label":"SNPs","pAvg":0.00543,"pSD":0.00131,"pScaled":0.00211,"pRank":57,"nSamples":50,"individualID.1":1,"individualID.2":83,"transmission":false,"snpDist":5,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":4253,"infectionDiff":4331,"infectionDiffY":11.86575,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"001_084","label":"SNPs","pAvg":0.00196,"pSD":0.00055,"pScaled":0.00099,"pRank":25,"nSamples":50,"individualID.1":1,"individualID.2":84,"transmission":false,"snpDist":10,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":4496,"infectionDiff":4379,"infectionDiffY":11.99726,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"001_085","label":"SNPs","pAvg":0.00159,"pSD":0.00049,"pScaled":0.00054,"pRank":32,"nSamples":50,"individualID.1":1,"individualID.2":85,"transmission":false,"snpDist":8,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":3608,"infectionDiff":4044,"infectionDiffY":11.07945,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"001_086","label":"SNPs","pAvg":0.00461,"pSD":0.00101,"pScaled":0.00147,"pRank":24,"nSamples":50,"individualID.1":1,"individualID.2":86,"transmission":false,"snpDist":5,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":3446,"infectionDiff":3672,"infectionDiffY":10.06027,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"001_087","label":"SNPs","pAvg":0.00599,"pSD":0.00152,"pScaled":0.00488,"pRank":11,"nSamples":50,"individualID.1":1,"individualID.2":87,"transmission":false,"snpDist":9,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":3980,"infectionDiff":4211,"infectionDiffY":11.53699,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"001_088","label":"SNPs","pAvg":0.00446,"pSD":0.00093,"pScaled":0.00086,"pRank":67,"nSamples":50,"individualID.1":1,"individualID.2":88,"transmission":false,"snpDist":4,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":4090,"infectionDiff":4546,"infectionDiffY":12.45479,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"001_089","label":"SNPs","pAvg":0.00175,"pSD":0.00051,"pScaled":0.00056,"pRank":33,"nSamples":50,"individualID.1":1,"individualID.2":89,"transmission":false,"snpDist":9,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":4382,"infectionDiff":4382,"infectionDiffY":12.00548,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"001_090","label":"SNPs","pAvg":0.00172,"pSD":0.00045,"pScaled":0.00045,"pRank":50,"nSamples":50,"individualID.1":1,"individualID.2":90,"transmission":false,"snpDist":10,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":4452,"infectionDiff":4609,"infectionDiffY":12.6274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"001_091","label":"SNPs","pAvg":0.00449,"pSD":0.00098,"pScaled":0.00225,"pRank":23,"nSamples":50,"individualID.1":1,"individualID.2":91,"transmission":false,"snpDist":9,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":4473,"infectionDiff":4200,"infectionDiffY":11.50685,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"001_092","label":"SNPs","pAvg":0.00191,"pSD":0.00057,"pScaled":0.00077,"pRank":24,"nSamples":50,"individualID.1":1,"individualID.2":92,"transmission":false,"snpDist":9,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":4520,"infectionDiff":4351,"infectionDiffY":11.92055,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"001_093","label":"SNPs","pAvg":0.00184,"pSD":0.00055,"pScaled":0.0005,"pRank":42,"nSamples":50,"individualID.1":1,"individualID.2":93,"transmission":false,"snpDist":10,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":4357,"infectionDiff":4577,"infectionDiffY":12.53973,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"001_094","label":"SNPs","pAvg":0.01095,"pSD":0.00252,"pScaled":0.00361,"pRank":22,"nSamples":50,"individualID.1":1,"individualID.2":94,"transmission":false,"snpDist":9,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":4403,"infectionDiff":4848,"infectionDiffY":13.28219,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"001_095","label":"SNPs","pAvg":0.00609,"pSD":0.00155,"pScaled":0.0031,"pRank":12,"nSamples":50,"individualID.1":1,"individualID.2":95,"transmission":false,"snpDist":9,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":3986,"infectionDiff":4280,"infectionDiffY":11.72603,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"001_096","label":"SNPs","pAvg":0.00531,"pSD":0.00136,"pScaled":0.00186,"pRank":24,"nSamples":50,"individualID.1":1,"individualID.2":96,"transmission":false,"snpDist":9,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":4081,"infectionDiff":4512,"infectionDiffY":12.36164,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"001_097","label":"SNPs","pAvg":0.00476,"pSD":0.00107,"pScaled":0.00107,"pRank":49,"nSamples":50,"individualID.1":1,"individualID.2":97,"transmission":false,"snpDist":9,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":4323,"infectionDiff":4668,"infectionDiffY":12.78904,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"001_098","label":"SNPs","pAvg":0.00333,"pSD":0.00083,"pScaled":0.00095,"pRank":30,"nSamples":50,"individualID.1":1,"individualID.2":98,"transmission":false,"snpDist":9,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":4142,"infectionDiff":4441,"infectionDiffY":12.16712,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"001_099","label":"SNPs","pAvg":0.01048,"pSD":0.00266,"pScaled":0.00358,"pRank":20,"nSamples":50,"individualID.1":1,"individualID.2":99,"transmission":false,"snpDist":6,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":4125,"infectionDiff":4305,"infectionDiffY":11.79452,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"001_100","label":"SNPs","pAvg":0.00948,"pSD":0.00239,"pScaled":0.00279,"pRank":39,"nSamples":50,"individualID.1":1,"individualID.2":100,"transmission":false,"snpDist":6,"infectionDate.1":"1986-04-08 20:31:37","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1987-08-03 09:10:04","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":4324,"infectionDiff":4683,"infectionDiffY":12.83014,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"002_003","label":"SNPs","pAvg":0.02086,"pSD":0.00865,"pScaled":0.06581,"pRank":7,"nSamples":500,"individualID.1":2,"individualID.2":3,"transmission":true,"snpDist":6,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1990-12-11 19:24:08","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1998-10-30 22:42:57","sampleDiff":3449,"infectionDiff":1553,"infectionDiffY":4.25479,"timeCat":"5","Z1":"1","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"002_004","label":"SNPs","pAvg":0.82208,"pSD":0.37813,"pScaled":0.47171,"pRank":2,"nSamples":275,"individualID.1":2,"individualID.2":4,"transmission":true,"snpDist":1,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1987-02-03 23:11:47","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1988-01-10 13:17:28","sampleDiff":-498,"infectionDiff":146,"infectionDiffY":0.4,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":true} {"pairID":"002_005","label":"SNPs","pAvg":0.85396,"pSD":0.34552,"pScaled":0.52123,"pRank":1,"nSamples":329,"individualID.1":2,"individualID.2":5,"transmission":true,"snpDist":2,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1986-10-28 21:54:09","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1988-09-21 13:32:09","sampleDiff":-243,"infectionDiff":48,"infectionDiffY":0.13151,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":true} {"pairID":"002_006","label":"SNPs","pAvg":0.90105,"pSD":0.29716,"pScaled":0.57547,"pRank":1,"nSamples":500,"individualID.1":2,"individualID.2":6,"transmission":false,"snpDist":2,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":1165,"infectionDiff":2111,"infectionDiffY":5.78356,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":true} {"pairID":"002_007","label":"SNPs","pAvg":0.70829,"pSD":0.44759,"pScaled":0.23845,"pRank":2,"nSamples":167,"individualID.1":2,"individualID.2":7,"transmission":false,"snpDist":1,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1987-07-15 05:58:16","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1988-02-23 12:34:50","sampleDiff":-454,"infectionDiff":307,"infectionDiffY":0.8411,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":true} {"pairID":"002_008","label":"SNPs","pAvg":0.05704,"pSD":0.01462,"pScaled":0.29591,"pRank":2,"nSamples":500,"individualID.1":2,"individualID.2":8,"transmission":false,"snpDist":5,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1986-12-18 07:49:26","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1990-04-14 16:45:48","sampleDiff":327,"infectionDiff":98,"infectionDiffY":0.26849,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"002_009","label":"SNPs","pAvg":0.00656,"pSD":0.00204,"pScaled":0.02924,"pRank":12,"nSamples":500,"individualID.1":2,"individualID.2":9,"transmission":false,"snpDist":8,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":3688,"infectionDiff":2793,"infectionDiffY":7.65205,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"002_010","label":"SNPs","pAvg":0.00395,"pSD":0.00122,"pScaled":0.00286,"pRank":21,"nSamples":50,"individualID.1":2,"individualID.2":10,"transmission":false,"snpDist":3,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":1139,"infectionDiff":1834,"infectionDiffY":5.02466,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"002_011","label":"SNPs","pAvg":0.03433,"pSD":0.0103,"pScaled":0.01372,"pRank":7,"nSamples":50,"individualID.1":2,"individualID.2":11,"transmission":false,"snpDist":3,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1988-04-18 02:31:21","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1991-10-25 12:28:14","sampleDiff":886,"infectionDiff":585,"infectionDiffY":1.60274,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"002_012","label":"SNPs","pAvg":0.42847,"pSD":0.48782,"pScaled":0.1074,"pRank":6,"nSamples":86,"individualID.1":2,"individualID.2":12,"transmission":false,"snpDist":2,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1988-04-12 22:57:51","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1988-09-04 19:08:48","sampleDiff":-260,"infectionDiff":580,"infectionDiffY":1.58904,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":true} {"pairID":"002_013","label":"SNPs","pAvg":0.70306,"pSD":0.43786,"pScaled":0.24339,"pRank":3,"nSamples":158,"individualID.1":2,"individualID.2":13,"transmission":false,"snpDist":2,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1987-03-23 16:58:33","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1987-07-30 23:29:57","sampleDiff":-661,"infectionDiff":194,"infectionDiffY":0.53151,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"1","snpClose":true} {"pairID":"002_014","label":"SNPs","pAvg":0.00787,"pSD":0.00237,"pScaled":0.00432,"pRank":25,"nSamples":50,"individualID.1":2,"individualID.2":14,"transmission":false,"snpDist":3,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":1719,"infectionDiff":2371,"infectionDiffY":6.49589,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"002_015","label":"SNPs","pAvg":0.03934,"pSD":0.01228,"pScaled":0.01542,"pRank":7,"nSamples":50,"individualID.1":2,"individualID.2":15,"transmission":false,"snpDist":3,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1988-08-20 08:24:18","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1992-08-15 08:05:31","sampleDiff":1181,"infectionDiff":709,"infectionDiffY":1.94247,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"002_016","label":"SNPs","pAvg":0.02163,"pSD":0.00636,"pScaled":0.05392,"pRank":11,"nSamples":500,"individualID.1":2,"individualID.2":16,"transmission":false,"snpDist":5,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1989-04-18 04:17:39","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1995-12-16 04:24:53","sampleDiff":2399,"infectionDiff":950,"infectionDiffY":2.60274,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"002_017","label":"SNPs","pAvg":0.01297,"pSD":0.00317,"pScaled":0.01808,"pRank":13,"nSamples":500,"individualID.1":2,"individualID.2":17,"transmission":false,"snpDist":6,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":2857,"infectionDiff":2143,"infectionDiffY":5.87123,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"002_018","label":"SNPs","pAvg":0.00386,"pSD":0.00113,"pScaled":0.00438,"pRank":35,"nSamples":500,"individualID.1":2,"individualID.2":18,"transmission":false,"snpDist":5,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":1612,"infectionDiff":2568,"infectionDiffY":7.03562,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"002_019","label":"SNPs","pAvg":0.01654,"pSD":0.00433,"pScaled":0.01503,"pRank":8,"nSamples":50,"individualID.1":2,"individualID.2":19,"transmission":false,"snpDist":4,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1987-12-12 09:17:01","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1991-09-26 03:18:54","sampleDiff":857,"infectionDiff":457,"infectionDiffY":1.25205,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"002_020","label":"SNPs","pAvg":0.67879,"pSD":0.43266,"pScaled":0.21267,"pRank":2,"nSamples":140,"individualID.1":2,"individualID.2":20,"transmission":false,"snpDist":2,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1987-03-30 17:23:41","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1994-08-15 09:04:39","sampleDiff":1911,"infectionDiff":201,"infectionDiffY":0.55068,"timeCat":"1","Z1":"0","Z2":"1","Z3":"2","Z4":"1","snpClose":true} {"pairID":"002_021","label":"SNPs","pAvg":0.00867,"pSD":0.00249,"pScaled":0.00828,"pRank":27,"nSamples":500,"individualID.1":2,"individualID.2":21,"transmission":false,"snpDist":4,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":3057,"infectionDiff":2565,"infectionDiffY":7.0274,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"002_022","label":"SNPs","pAvg":0.03753,"pSD":0.01133,"pScaled":0.07321,"pRank":6,"nSamples":500,"individualID.1":2,"individualID.2":22,"transmission":false,"snpDist":4,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1989-06-06 04:07:23","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1991-10-22 14:29:51","sampleDiff":883,"infectionDiff":999,"infectionDiffY":2.73699,"timeCat":"3","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"002_023","label":"SNPs","pAvg":0.01003,"pSD":0.00207,"pScaled":0.00447,"pRank":37,"nSamples":50,"individualID.1":2,"individualID.2":23,"transmission":false,"snpDist":6,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":3845,"infectionDiff":4332,"infectionDiffY":11.86849,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"002_024","label":"SNPs","pAvg":0.01376,"pSD":0.00649,"pScaled":0.01063,"pRank":12,"nSamples":50,"individualID.1":2,"individualID.2":24,"transmission":false,"snpDist":5,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1991-02-07 21:59:42","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1992-10-05 23:05:30","sampleDiff":1233,"infectionDiff":1611,"infectionDiffY":4.4137,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"002_025","label":"SNPs","pAvg":0.68938,"pSD":0.45799,"pScaled":0.15642,"pRank":1,"nSamples":158,"individualID.1":2,"individualID.2":25,"transmission":false,"snpDist":2,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1989-07-09 14:49:21","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1990-01-24 23:05:50","sampleDiff":248,"infectionDiff":1032,"infectionDiffY":2.8274,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":true} {"pairID":"002_026","label":"SNPs","pAvg":0.01494,"pSD":0.00468,"pScaled":0.00525,"pRank":15,"nSamples":50,"individualID.1":2,"individualID.2":26,"transmission":false,"snpDist":5,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":3449,"infectionDiff":3629,"infectionDiffY":9.94247,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"002_027","label":"SNPs","pAvg":0.00885,"pSD":0.00266,"pScaled":0.00316,"pRank":46,"nSamples":50,"individualID.1":2,"individualID.2":27,"transmission":false,"snpDist":4,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":3622,"infectionDiff":4219,"infectionDiffY":11.5589,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"002_028","label":"SNPs","pAvg":0.01162,"pSD":0.00267,"pScaled":0.00325,"pRank":34,"nSamples":50,"individualID.1":2,"individualID.2":28,"transmission":false,"snpDist":4,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":2839,"infectionDiff":3043,"infectionDiffY":8.33699,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"002_029","label":"SNPs","pAvg":0.00731,"pSD":0.00356,"pScaled":0.01804,"pRank":14,"nSamples":500,"individualID.1":2,"individualID.2":29,"transmission":false,"snpDist":4,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1990-12-27 23:28:20","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1992-03-01 23:20:54","sampleDiff":1015,"infectionDiff":1569,"infectionDiffY":4.29863,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"002_030","label":"SNPs","pAvg":0.01538,"pSD":0.00424,"pScaled":0.01076,"pRank":13,"nSamples":50,"individualID.1":2,"individualID.2":30,"transmission":false,"snpDist":5,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":1090,"infectionDiff":2050,"infectionDiffY":5.61644,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"002_031","label":"SNPs","pAvg":0.0108,"pSD":0.00457,"pScaled":0.01782,"pRank":14,"nSamples":500,"individualID.1":2,"individualID.2":31,"transmission":false,"snpDist":4,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1991-01-03 16:49:07","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1991-07-17 03:37:35","sampleDiff":786,"infectionDiff":1575,"infectionDiffY":4.31507,"timeCat":"5","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"002_032","label":"SNPs","pAvg":0.00679,"pSD":0.0017,"pScaled":0.00463,"pRank":20,"nSamples":50,"individualID.1":2,"individualID.2":32,"transmission":false,"snpDist":7,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":2520,"infectionDiff":1996,"infectionDiffY":5.46849,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"002_033","label":"SNPs","pAvg":0.00643,"pSD":0.00209,"pScaled":0.00293,"pRank":28,"nSamples":50,"individualID.1":2,"individualID.2":33,"transmission":false,"snpDist":7,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":3066,"infectionDiff":3900,"infectionDiffY":10.68493,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"002_034","label":"SNPs","pAvg":0.00265,"pSD":0.00141,"pScaled":0.00889,"pRank":14,"nSamples":500,"individualID.1":2,"individualID.2":34,"transmission":false,"snpDist":8,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":2089,"infectionDiff":1615,"infectionDiffY":4.42466,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"002_035","label":"SNPs","pAvg":0.00387,"pSD":0.00098,"pScaled":0.00101,"pRank":42,"nSamples":50,"individualID.1":2,"individualID.2":35,"transmission":false,"snpDist":4,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":3029,"infectionDiff":2698,"infectionDiffY":7.39178,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"002_036","label":"SNPs","pAvg":0.0135,"pSD":0.00312,"pScaled":0.00365,"pRank":38,"nSamples":50,"individualID.1":2,"individualID.2":36,"transmission":false,"snpDist":4,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":2828,"infectionDiff":3508,"infectionDiffY":9.61096,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"002_037","label":"SNPs","pAvg":0.01899,"pSD":0.00502,"pScaled":0.01915,"pRank":19,"nSamples":500,"individualID.1":2,"individualID.2":37,"transmission":false,"snpDist":8,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":3215,"infectionDiff":3031,"infectionDiffY":8.30411,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"002_038","label":"SNPs","pAvg":0.01454,"pSD":0.00414,"pScaled":0.01727,"pRank":18,"nSamples":500,"individualID.1":2,"individualID.2":38,"transmission":false,"snpDist":9,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":2277,"infectionDiff":2675,"infectionDiffY":7.32877,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"002_039","label":"SNPs","pAvg":0.01454,"pSD":0.00414,"pScaled":0.03138,"pRank":9,"nSamples":500,"individualID.1":2,"individualID.2":39,"transmission":false,"snpDist":10,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":2442,"infectionDiff":2121,"infectionDiffY":5.81096,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"002_040","label":"SNPs","pAvg":0.00751,"pSD":0.0022,"pScaled":0.00672,"pRank":45,"nSamples":500,"individualID.1":2,"individualID.2":40,"transmission":false,"snpDist":7,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":2850,"infectionDiff":3764,"infectionDiffY":10.31233,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"002_041","label":"SNPs","pAvg":0.01268,"pSD":0.00389,"pScaled":0.03292,"pRank":12,"nSamples":500,"individualID.1":2,"individualID.2":41,"transmission":false,"snpDist":8,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":3700,"infectionDiff":1965,"infectionDiffY":5.38356,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"002_042","label":"SNPs","pAvg":0.00703,"pSD":0.0033,"pScaled":0.00259,"pRank":18,"nSamples":50,"individualID.1":2,"individualID.2":42,"transmission":false,"snpDist":4,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":1103,"infectionDiff":1617,"infectionDiffY":4.43014,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"002_043","label":"SNPs","pAvg":0.00583,"pSD":0.00148,"pScaled":0.00787,"pRank":25,"nSamples":500,"individualID.1":2,"individualID.2":43,"transmission":false,"snpDist":8,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":3825,"infectionDiff":2384,"infectionDiffY":6.53151,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"002_044","label":"SNPs","pAvg":0.00583,"pSD":0.00134,"pScaled":0.00157,"pRank":24,"nSamples":50,"individualID.1":2,"individualID.2":44,"transmission":false,"snpDist":5,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":1445,"infectionDiff":2285,"infectionDiffY":6.26027,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"002_045","label":"SNPs","pAvg":0.00977,"pSD":0.0034,"pScaled":0.00591,"pRank":26,"nSamples":50,"individualID.1":2,"individualID.2":45,"transmission":false,"snpDist":8,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":3224,"infectionDiff":3275,"infectionDiffY":8.9726,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"002_046","label":"SNPs","pAvg":0.01971,"pSD":0.00471,"pScaled":0.0114,"pRank":15,"nSamples":50,"individualID.1":2,"individualID.2":46,"transmission":false,"snpDist":6,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":2129,"infectionDiff":2230,"infectionDiffY":6.10959,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"002_047","label":"SNPs","pAvg":0.0066,"pSD":0.00165,"pScaled":0.00142,"pRank":39,"nSamples":50,"individualID.1":2,"individualID.2":47,"transmission":false,"snpDist":6,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":2075,"infectionDiff":2961,"infectionDiffY":8.11233,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"002_048","label":"SNPs","pAvg":0.01126,"pSD":0.00308,"pScaled":0.00497,"pRank":19,"nSamples":50,"individualID.1":2,"individualID.2":48,"transmission":false,"snpDist":7,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":2358,"infectionDiff":2495,"infectionDiffY":6.83562,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"002_049","label":"SNPs","pAvg":0.00754,"pSD":0.00227,"pScaled":0.00494,"pRank":21,"nSamples":50,"individualID.1":2,"individualID.2":49,"transmission":false,"snpDist":7,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":2093,"infectionDiff":2113,"infectionDiffY":5.78904,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"002_050","label":"SNPs","pAvg":0.00154,"pSD":0.00076,"pScaled":0.00672,"pRank":17,"nSamples":500,"individualID.1":2,"individualID.2":50,"transmission":false,"snpDist":5,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":1947,"infectionDiff":1786,"infectionDiffY":4.89315,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"002_051","label":"SNPs","pAvg":0.00624,"pSD":0.00174,"pScaled":0.00296,"pRank":41,"nSamples":50,"individualID.1":2,"individualID.2":51,"transmission":false,"snpDist":5,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":1862,"infectionDiff":2753,"infectionDiffY":7.54247,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"002_052","label":"SNPs","pAvg":0.01488,"pSD":0.00421,"pScaled":0.00558,"pRank":25,"nSamples":50,"individualID.1":2,"individualID.2":52,"transmission":false,"snpDist":6,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":3694,"infectionDiff":3780,"infectionDiffY":10.35616,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"002_053","label":"SNPs","pAvg":0.01237,"pSD":0.004,"pScaled":0.00826,"pRank":15,"nSamples":50,"individualID.1":2,"individualID.2":53,"transmission":false,"snpDist":8,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":2382,"infectionDiff":3245,"infectionDiffY":8.89041,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"002_054","label":"SNPs","pAvg":0.00676,"pSD":0.00206,"pScaled":0.00176,"pRank":32,"nSamples":50,"individualID.1":2,"individualID.2":54,"transmission":false,"snpDist":8,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":3553,"infectionDiff":4169,"infectionDiffY":11.42192,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"002_055","label":"SNPs","pAvg":0.00387,"pSD":0.00115,"pScaled":0.00119,"pRank":42,"nSamples":50,"individualID.1":2,"individualID.2":55,"transmission":false,"snpDist":8,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":2536,"infectionDiff":3437,"infectionDiffY":9.41644,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"002_056","label":"SNPs","pAvg":0.01563,"pSD":0.0044,"pScaled":0.00373,"pRank":17,"nSamples":50,"individualID.1":2,"individualID.2":56,"transmission":false,"snpDist":8,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":2960,"infectionDiff":3521,"infectionDiffY":9.64658,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"002_057","label":"SNPs","pAvg":0.01484,"pSD":0.00421,"pScaled":0.00297,"pRank":22,"nSamples":50,"individualID.1":2,"individualID.2":57,"transmission":false,"snpDist":9,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":3523,"infectionDiff":4171,"infectionDiffY":11.4274,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"002_058","label":"SNPs","pAvg":0.01454,"pSD":0.00414,"pScaled":0.01435,"pRank":21,"nSamples":500,"individualID.1":2,"individualID.2":58,"transmission":false,"snpDist":10,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":3808,"infectionDiff":3860,"infectionDiffY":10.57534,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"002_059","label":"SNPs","pAvg":0.00673,"pSD":0.00171,"pScaled":0.00967,"pRank":22,"nSamples":500,"individualID.1":2,"individualID.2":59,"transmission":false,"snpDist":10,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":3188,"infectionDiff":2324,"infectionDiffY":6.36712,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"002_060","label":"SNPs","pAvg":0.00804,"pSD":0.00235,"pScaled":0.0039,"pRank":45,"nSamples":50,"individualID.1":2,"individualID.2":60,"transmission":false,"snpDist":8,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":3849,"infectionDiff":4502,"infectionDiffY":12.33425,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"002_061","label":"SNPs","pAvg":0.00445,"pSD":0.00123,"pScaled":0.00845,"pRank":25,"nSamples":500,"individualID.1":2,"individualID.2":61,"transmission":false,"snpDist":7,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":3642,"infectionDiff":3720,"infectionDiffY":10.19178,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"002_062","label":"SNPs","pAvg":0.00656,"pSD":0.00153,"pScaled":0.00174,"pRank":33,"nSamples":50,"individualID.1":2,"individualID.2":62,"transmission":false,"snpDist":6,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":2377,"infectionDiff":2624,"infectionDiffY":7.18904,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"002_063","label":"SNPs","pAvg":0.00307,"pSD":0.00094,"pScaled":0.00148,"pRank":26,"nSamples":50,"individualID.1":2,"individualID.2":63,"transmission":false,"snpDist":7,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":1809,"infectionDiff":2419,"infectionDiffY":6.6274,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"002_064","label":"SNPs","pAvg":0.01008,"pSD":0.00308,"pScaled":0.00383,"pRank":14,"nSamples":50,"individualID.1":2,"individualID.2":64,"transmission":false,"snpDist":9,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":2592,"infectionDiff":3401,"infectionDiffY":9.31781,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"002_065","label":"SNPs","pAvg":0.0089,"pSD":0.00255,"pScaled":0.00687,"pRank":16,"nSamples":50,"individualID.1":2,"individualID.2":65,"transmission":false,"snpDist":8,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":2600,"infectionDiff":3334,"infectionDiffY":9.13425,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"002_066","label":"SNPs","pAvg":0.01158,"pSD":0.00256,"pScaled":0.00306,"pRank":21,"nSamples":50,"individualID.1":2,"individualID.2":66,"transmission":false,"snpDist":9,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":2747,"infectionDiff":3480,"infectionDiffY":9.53425,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"002_067","label":"SNPs","pAvg":0.01548,"pSD":0.00406,"pScaled":0.00391,"pRank":31,"nSamples":50,"individualID.1":2,"individualID.2":67,"transmission":false,"snpDist":10,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":3869,"infectionDiff":4566,"infectionDiffY":12.50959,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"002_068","label":"SNPs","pAvg":0.00651,"pSD":0.00155,"pScaled":0.00142,"pRank":57,"nSamples":50,"individualID.1":2,"individualID.2":68,"transmission":false,"snpDist":5,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":3475,"infectionDiff":4218,"infectionDiffY":11.55616,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"002_069","label":"SNPs","pAvg":0.00384,"pSD":0.00119,"pScaled":0.00123,"pRank":43,"nSamples":50,"individualID.1":2,"individualID.2":69,"transmission":false,"snpDist":6,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":3520,"infectionDiff":4244,"infectionDiffY":11.6274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"002_070","label":"SNPs","pAvg":0.00873,"pSD":0.00283,"pScaled":0.0027,"pRank":27,"nSamples":50,"individualID.1":2,"individualID.2":70,"transmission":false,"snpDist":7,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":2056,"infectionDiff":2662,"infectionDiffY":7.29315,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"002_071","label":"SNPs","pAvg":0.00086,"pSD":0.00269,"pScaled":0.00088,"pRank":41,"nSamples":500,"individualID.1":2,"individualID.2":71,"transmission":false,"snpDist":11,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":3575,"infectionDiff":2921,"infectionDiffY":8.00274,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"002_072","label":"SNPs","pAvg":0.00141,"pSD":0.00048,"pScaled":0.00043,"pRank":41,"nSamples":50,"individualID.1":2,"individualID.2":72,"transmission":false,"snpDist":7,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":2016,"infectionDiff":2840,"infectionDiffY":7.78082,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"002_073","label":"SNPs","pAvg":0.00367,"pSD":0.00113,"pScaled":0.0027,"pRank":30,"nSamples":50,"individualID.1":2,"individualID.2":73,"transmission":false,"snpDist":7,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":3097,"infectionDiff":3591,"infectionDiffY":9.83836,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"002_074","label":"SNPs","pAvg":0.00152,"pSD":0.0005,"pScaled":0.00083,"pRank":32,"nSamples":50,"individualID.1":2,"individualID.2":74,"transmission":false,"snpDist":6,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":2937,"infectionDiff":2971,"infectionDiffY":8.13973,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"002_075","label":"SNPs","pAvg":0.00028,"pSD":0.0009,"pScaled":0.00123,"pRank":70,"nSamples":500,"individualID.1":2,"individualID.2":75,"transmission":false,"snpDist":12,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":3603,"infectionDiff":4544,"infectionDiffY":12.44932,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"002_076","label":"SNPs","pAvg":0.00623,"pSD":0.00184,"pScaled":0.00153,"pRank":55,"nSamples":50,"individualID.1":2,"individualID.2":76,"transmission":false,"snpDist":5,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":3838,"infectionDiff":4218,"infectionDiffY":11.55616,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"002_077","label":"SNPs","pAvg":0.00731,"pSD":0.00201,"pScaled":0.00162,"pRank":39,"nSamples":50,"individualID.1":2,"individualID.2":77,"transmission":false,"snpDist":4,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":2991,"infectionDiff":3933,"infectionDiffY":10.77534,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"002_078","label":"SNPs","pAvg":0.00766,"pSD":0.00217,"pScaled":0.0017,"pRank":59,"nSamples":50,"individualID.1":2,"individualID.2":78,"transmission":false,"snpDist":4,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":3681,"infectionDiff":4246,"infectionDiffY":11.63288,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"002_079","label":"SNPs","pAvg":0.00169,"pSD":0.0005,"pScaled":0.00085,"pRank":44,"nSamples":50,"individualID.1":2,"individualID.2":79,"transmission":false,"snpDist":9,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":3090,"infectionDiff":3529,"infectionDiffY":9.66849,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"002_080","label":"SNPs","pAvg":0.0024,"pSD":0.00069,"pScaled":0.01756,"pRank":8,"nSamples":500,"individualID.1":2,"individualID.2":80,"transmission":false,"snpDist":9,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":3099,"infectionDiff":3461,"infectionDiffY":9.48219,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"002_081","label":"SNPs","pAvg":0.00408,"pSD":0.00115,"pScaled":0.00102,"pRank":45,"nSamples":50,"individualID.1":2,"individualID.2":81,"transmission":false,"snpDist":4,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":3815,"infectionDiff":4628,"infectionDiffY":12.67945,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"002_082","label":"SNPs","pAvg":0.00433,"pSD":0.00121,"pScaled":0.00094,"pRank":75,"nSamples":50,"individualID.1":2,"individualID.2":82,"transmission":false,"snpDist":6,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":3819,"infectionDiff":4705,"infectionDiffY":12.89041,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"002_083","label":"SNPs","pAvg":0.00695,"pSD":0.00199,"pScaled":0.0027,"pRank":49,"nSamples":50,"individualID.1":2,"individualID.2":83,"transmission":false,"snpDist":6,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":3595,"infectionDiff":4175,"infectionDiffY":11.43836,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"002_084","label":"SNPs","pAvg":0.00017,"pSD":0.00054,"pScaled":0.00009,"pRank":79,"nSamples":500,"individualID.1":2,"individualID.2":84,"transmission":false,"snpDist":11,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":3838,"infectionDiff":4223,"infectionDiffY":11.56986,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"002_085","label":"SNPs","pAvg":0.00141,"pSD":0.00046,"pScaled":0.00048,"pRank":38,"nSamples":50,"individualID.1":2,"individualID.2":85,"transmission":false,"snpDist":9,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":2950,"infectionDiff":3888,"infectionDiffY":10.65205,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"002_086","label":"SNPs","pAvg":0.00391,"pSD":0.00107,"pScaled":0.00125,"pRank":30,"nSamples":50,"individualID.1":2,"individualID.2":86,"transmission":false,"snpDist":6,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":2788,"infectionDiff":3516,"infectionDiffY":9.63288,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"002_087","label":"SNPs","pAvg":0.00656,"pSD":0.00169,"pScaled":0.00535,"pRank":9,"nSamples":50,"individualID.1":2,"individualID.2":87,"transmission":false,"snpDist":10,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":3322,"infectionDiff":4056,"infectionDiffY":11.11233,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"002_088","label":"SNPs","pAvg":0.00379,"pSD":0.00115,"pScaled":0.00073,"pRank":75,"nSamples":50,"individualID.1":2,"individualID.2":88,"transmission":false,"snpDist":5,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":3432,"infectionDiff":4391,"infectionDiffY":12.03014,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"002_089","label":"SNPs","pAvg":0.00155,"pSD":0.00056,"pScaled":0.0005,"pRank":39,"nSamples":50,"individualID.1":2,"individualID.2":89,"transmission":false,"snpDist":10,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":3724,"infectionDiff":4227,"infectionDiffY":11.58082,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"002_090","label":"SNPs","pAvg":0.00015,"pSD":0.00048,"pScaled":0.00004,"pRank":91,"nSamples":500,"individualID.1":2,"individualID.2":90,"transmission":false,"snpDist":11,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":3794,"infectionDiff":4453,"infectionDiffY":12.2,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"002_091","label":"SNPs","pAvg":0.004,"pSD":0.00106,"pScaled":0.00201,"pRank":27,"nSamples":50,"individualID.1":2,"individualID.2":91,"transmission":false,"snpDist":10,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":3815,"infectionDiff":4045,"infectionDiffY":11.08219,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"002_092","label":"SNPs","pAvg":0.00168,"pSD":0.00049,"pScaled":0.00068,"pRank":30,"nSamples":50,"individualID.1":2,"individualID.2":92,"transmission":false,"snpDist":10,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":3862,"infectionDiff":4196,"infectionDiffY":11.49589,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"002_093","label":"SNPs","pAvg":0.00024,"pSD":0.00075,"pScaled":0.00006,"pRank":81,"nSamples":500,"individualID.1":2,"individualID.2":93,"transmission":false,"snpDist":11,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":3699,"infectionDiff":4421,"infectionDiffY":12.11233,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"002_094","label":"SNPs","pAvg":0.00874,"pSD":0.00257,"pScaled":0.00288,"pRank":29,"nSamples":50,"individualID.1":2,"individualID.2":94,"transmission":false,"snpDist":10,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":3745,"infectionDiff":4693,"infectionDiffY":12.85753,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"002_095","label":"SNPs","pAvg":0.00655,"pSD":0.00185,"pScaled":0.00333,"pRank":10,"nSamples":50,"individualID.1":2,"individualID.2":95,"transmission":false,"snpDist":10,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":3328,"infectionDiff":4125,"infectionDiffY":11.30137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"002_096","label":"SNPs","pAvg":0.00428,"pSD":0.00132,"pScaled":0.0015,"pRank":30,"nSamples":50,"individualID.1":2,"individualID.2":96,"transmission":false,"snpDist":10,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":3423,"infectionDiff":4357,"infectionDiffY":11.93699,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"002_097","label":"SNPs","pAvg":0.00406,"pSD":0.00112,"pScaled":0.00091,"pRank":57,"nSamples":50,"individualID.1":2,"individualID.2":97,"transmission":false,"snpDist":10,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":3665,"infectionDiff":4513,"infectionDiffY":12.36438,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"002_098","label":"SNPs","pAvg":0.00293,"pSD":0.00094,"pScaled":0.00083,"pRank":32,"nSamples":50,"individualID.1":2,"individualID.2":98,"transmission":false,"snpDist":10,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":3484,"infectionDiff":4286,"infectionDiffY":11.74247,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"002_099","label":"SNPs","pAvg":0.00897,"pSD":0.00261,"pScaled":0.00306,"pRank":23,"nSamples":50,"individualID.1":2,"individualID.2":99,"transmission":false,"snpDist":7,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":3467,"infectionDiff":4150,"infectionDiffY":11.36986,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"002_100","label":"SNPs","pAvg":0.00786,"pSD":0.00215,"pScaled":0.00232,"pRank":51,"nSamples":50,"individualID.1":2,"individualID.2":100,"transmission":false,"snpDist":7,"infectionDate.1":"1986-09-11 04:55:40","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1989-05-22 08:46:29","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":3666,"infectionDiff":4528,"infectionDiffY":12.40548,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"003_006","label":"SNPs","pAvg":0.05297,"pSD":0.01367,"pScaled":0.03383,"pRank":5,"nSamples":50,"individualID.1":3,"individualID.2":6,"transmission":true,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":-2284,"infectionDiff":558,"infectionDiffY":1.52877,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"003_009","label":"SNPs","pAvg":0.01402,"pSD":0.00503,"pScaled":0.06247,"pRank":3,"nSamples":500,"individualID.1":3,"individualID.2":9,"transmission":false,"snpDist":8,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":240,"infectionDiff":1241,"infectionDiffY":3.4,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"003_010","label":"SNPs","pAvg":0.02541,"pSD":0.00725,"pScaled":0.01841,"pRank":11,"nSamples":50,"individualID.1":3,"individualID.2":10,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":-2309,"infectionDiff":282,"infectionDiffY":0.7726,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"003_014","label":"SNPs","pAvg":0.02847,"pSD":0.00833,"pScaled":0.01564,"pRank":15,"nSamples":50,"individualID.1":3,"individualID.2":14,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":-1730,"infectionDiff":818,"infectionDiffY":2.2411,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"003_017","label":"SNPs","pAvg":0.00588,"pSD":0.01846,"pScaled":0.0082,"pRank":25,"nSamples":500,"individualID.1":3,"individualID.2":17,"transmission":false,"snpDist":12,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":-592,"infectionDiff":590,"infectionDiffY":1.61644,"timeCat":"2","Z1":"1","Z2":"1","Z3":"2","Z4":"2","snpClose":false} {"pairID":"003_018","label":"SNPs","pAvg":0.01289,"pSD":0.00369,"pScaled":0.01461,"pRank":24,"nSamples":500,"individualID.1":3,"individualID.2":18,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":-1837,"infectionDiff":1015,"infectionDiffY":2.78082,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"003_021","label":"SNPs","pAvg":0.02861,"pSD":0.0082,"pScaled":0.02731,"pRank":19,"nSamples":500,"individualID.1":3,"individualID.2":21,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":-392,"infectionDiff":1012,"infectionDiffY":2.7726,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"003_023","label":"SNPs","pAvg":0.01003,"pSD":0.00207,"pScaled":0.00447,"pRank":37,"nSamples":50,"individualID.1":3,"individualID.2":23,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":397,"infectionDiff":2780,"infectionDiffY":7.61644,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"003_024","label":"SNPs","pAvg":0.00764,"pSD":0.02365,"pScaled":0.0059,"pRank":16,"nSamples":500,"individualID.1":3,"individualID.2":24,"transmission":false,"snpDist":11,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1991-02-07 21:59:42","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1992-10-05 23:05:30","sampleDiff":-2216,"infectionDiff":58,"infectionDiffY":0.1589,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"003_026","label":"SNPs","pAvg":0.00149,"pSD":0.00472,"pScaled":0.00052,"pRank":56,"nSamples":500,"individualID.1":3,"individualID.2":26,"transmission":false,"snpDist":11,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1,"infectionDiff":2077,"infectionDiffY":5.69041,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"003_027","label":"SNPs","pAvg":0.00885,"pSD":0.00266,"pScaled":0.00316,"pRank":46,"nSamples":50,"individualID.1":3,"individualID.2":27,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":173,"infectionDiff":2666,"infectionDiffY":7.30411,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"003_028","label":"SNPs","pAvg":0.01114,"pSD":0.00447,"pScaled":0.00311,"pRank":35,"nSamples":50,"individualID.1":3,"individualID.2":28,"transmission":false,"snpDist":10,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":-610,"infectionDiff":1491,"infectionDiffY":4.08493,"timeCat":"5","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"003_029","label":"SNPs","pAvg":0.04421,"pSD":0.01282,"pScaled":0.10911,"pRank":4,"nSamples":500,"individualID.1":3,"individualID.2":29,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1990-12-27 23:28:20","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1992-03-01 23:20:54","sampleDiff":-2434,"infectionDiff":16,"infectionDiffY":0.04384,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"003_030","label":"SNPs","pAvg":0.06406,"pSD":0.0175,"pScaled":0.04479,"pRank":3,"nSamples":50,"individualID.1":3,"individualID.2":30,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":-2359,"infectionDiff":497,"infectionDiffY":1.36164,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"003_031","label":"SNPs","pAvg":0.06457,"pSD":0.01389,"pScaled":0.10652,"pRank":3,"nSamples":500,"individualID.1":3,"individualID.2":31,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1991-01-03 16:49:07","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1991-07-17 03:37:35","sampleDiff":-2663,"infectionDiff":23,"infectionDiffY":0.06301,"timeCat":"1","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"003_032","label":"SNPs","pAvg":0.02952,"pSD":0.00826,"pScaled":0.02013,"pRank":10,"nSamples":50,"individualID.1":3,"individualID.2":32,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":-929,"infectionDiff":443,"infectionDiffY":1.2137,"timeCat":"2","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"003_033","label":"SNPs","pAvg":0.00064,"pSD":0.00204,"pScaled":0.00029,"pRank":65,"nSamples":500,"individualID.1":3,"individualID.2":33,"transmission":false,"snpDist":13,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":-382,"infectionDiff":2348,"infectionDiffY":6.43288,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"003_034","label":"SNPs","pAvg":0.00166,"pSD":0.00526,"pScaled":0.00558,"pRank":16,"nSamples":500,"individualID.1":3,"individualID.2":34,"transmission":false,"snpDist":14,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":-1360,"infectionDiff":62,"infectionDiffY":0.16986,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"003_035","label":"SNPs","pAvg":0.00762,"pSD":0.00264,"pScaled":0.00198,"pRank":39,"nSamples":50,"individualID.1":3,"individualID.2":35,"transmission":false,"snpDist":10,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":-420,"infectionDiff":1145,"infectionDiffY":3.13699,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"003_036","label":"SNPs","pAvg":0.0135,"pSD":0.00312,"pScaled":0.00365,"pRank":38,"nSamples":50,"individualID.1":3,"individualID.2":36,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":-621,"infectionDiff":1956,"infectionDiffY":5.3589,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"003_037","label":"SNPs","pAvg":0.01827,"pSD":0.00827,"pScaled":0.01842,"pRank":20,"nSamples":500,"individualID.1":3,"individualID.2":37,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":-234,"infectionDiff":1478,"infectionDiffY":4.04932,"timeCat":"5","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"003_038","label":"SNPs","pAvg":0.03035,"pSD":0.00883,"pScaled":0.03604,"pRank":9,"nSamples":500,"individualID.1":3,"individualID.2":38,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":-1172,"infectionDiff":1123,"infectionDiffY":3.07671,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"003_039","label":"SNPs","pAvg":0.00646,"pSD":0.02015,"pScaled":0.01393,"pRank":17,"nSamples":500,"individualID.1":3,"individualID.2":39,"transmission":false,"snpDist":16,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":-1007,"infectionDiff":569,"infectionDiffY":1.5589,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"003_040","label":"SNPs","pAvg":0.00751,"pSD":0.0022,"pScaled":0.00672,"pRank":45,"nSamples":500,"individualID.1":3,"individualID.2":40,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":-598,"infectionDiff":2212,"infectionDiffY":6.06027,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"003_041","label":"SNPs","pAvg":0.00573,"pSD":0.01807,"pScaled":0.01487,"pRank":18,"nSamples":500,"individualID.1":3,"individualID.2":41,"transmission":false,"snpDist":14,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":251,"infectionDiff":412,"infectionDiffY":1.12877,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"003_042","label":"SNPs","pAvg":0.04373,"pSD":0.01376,"pScaled":0.01614,"pRank":8,"nSamples":50,"individualID.1":3,"individualID.2":42,"transmission":false,"snpDist":10,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":-2345,"infectionDiff":64,"infectionDiffY":0.17534,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"003_043","label":"SNPs","pAvg":0.00189,"pSD":0.00609,"pScaled":0.00256,"pRank":33,"nSamples":500,"individualID.1":3,"individualID.2":43,"transmission":false,"snpDist":14,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":377,"infectionDiff":831,"infectionDiffY":2.27671,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"003_044","label":"SNPs","pAvg":0.00192,"pSD":0.0061,"pScaled":0.00052,"pRank":31,"nSamples":500,"individualID.1":3,"individualID.2":44,"transmission":false,"snpDist":11,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":-2003,"infectionDiff":732,"infectionDiffY":2.00548,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"003_045","label":"SNPs","pAvg":0.00093,"pSD":0.00321,"pScaled":0.00056,"pRank":50,"nSamples":500,"individualID.1":3,"individualID.2":45,"transmission":false,"snpDist":14,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":-225,"infectionDiff":1723,"infectionDiffY":4.72055,"timeCat":"5","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"003_046","label":"SNPs","pAvg":0.08233,"pSD":0.0206,"pScaled":0.04763,"pRank":4,"nSamples":50,"individualID.1":3,"individualID.2":46,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":-1320,"infectionDiff":677,"infectionDiffY":1.85479,"timeCat":"2","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"003_047","label":"SNPs","pAvg":0.0014,"pSD":0.0045,"pScaled":0.0003,"pRank":46,"nSamples":500,"individualID.1":3,"individualID.2":47,"transmission":false,"snpDist":12,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":-1374,"infectionDiff":1408,"infectionDiffY":3.85753,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"003_048","label":"SNPs","pAvg":0.00369,"pSD":0.01172,"pScaled":0.00163,"pRank":34,"nSamples":500,"individualID.1":3,"individualID.2":48,"transmission":false,"snpDist":13,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":-1091,"infectionDiff":943,"infectionDiffY":2.58356,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"003_049","label":"SNPs","pAvg":0.00331,"pSD":0.01038,"pScaled":0.00217,"pRank":27,"nSamples":500,"individualID.1":3,"individualID.2":49,"transmission":false,"snpDist":13,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":-1356,"infectionDiff":561,"infectionDiffY":1.53699,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"003_050","label":"SNPs","pAvg":0.00093,"pSD":0.00291,"pScaled":0.00406,"pRank":21,"nSamples":500,"individualID.1":3,"individualID.2":50,"transmission":false,"snpDist":11,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":-1501,"infectionDiff":233,"infectionDiffY":0.63836,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"003_051","label":"SNPs","pAvg":0.00135,"pSD":0.00437,"pScaled":0.00064,"pRank":43,"nSamples":500,"individualID.1":3,"individualID.2":51,"transmission":false,"snpDist":11,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-1587,"infectionDiff":1200,"infectionDiffY":3.28767,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"003_052","label":"SNPs","pAvg":0.00149,"pSD":0.00466,"pScaled":0.00056,"pRank":60,"nSamples":500,"individualID.1":3,"individualID.2":52,"transmission":false,"snpDist":12,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":246,"infectionDiff":2228,"infectionDiffY":6.10411,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"003_053","label":"SNPs","pAvg":0.00118,"pSD":0.00406,"pScaled":0.00079,"pRank":46,"nSamples":500,"individualID.1":3,"individualID.2":53,"transmission":false,"snpDist":14,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":-1067,"infectionDiff":1692,"infectionDiffY":4.63562,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"003_054","label":"SNPs","pAvg":0.00676,"pSD":0.00206,"pScaled":0.00176,"pRank":32,"nSamples":50,"individualID.1":3,"individualID.2":54,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":104,"infectionDiff":2617,"infectionDiffY":7.16986,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"003_055","label":"SNPs","pAvg":0.00039,"pSD":0.00122,"pScaled":0.00012,"pRank":55,"nSamples":500,"individualID.1":3,"individualID.2":55,"transmission":false,"snpDist":14,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":-912,"infectionDiff":1884,"infectionDiffY":5.16164,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"003_056","label":"SNPs","pAvg":0.00156,"pSD":0.00489,"pScaled":0.00037,"pRank":49,"nSamples":500,"individualID.1":3,"individualID.2":56,"transmission":false,"snpDist":14,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":-489,"infectionDiff":1969,"infectionDiffY":5.39452,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"003_057","label":"SNPs","pAvg":0.00148,"pSD":0.00465,"pScaled":0.0003,"pRank":56,"nSamples":500,"individualID.1":3,"individualID.2":57,"transmission":false,"snpDist":15,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":74,"infectionDiff":2619,"infectionDiffY":7.17534,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"003_058","label":"SNPs","pAvg":0.01454,"pSD":0.00414,"pScaled":0.01435,"pRank":21,"nSamples":500,"individualID.1":3,"individualID.2":58,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":359,"infectionDiff":2307,"infectionDiffY":6.32055,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"003_059","label":"SNPs","pAvg":0.02266,"pSD":0.00721,"pScaled":0.03257,"pRank":13,"nSamples":500,"individualID.1":3,"individualID.2":59,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":-261,"infectionDiff":771,"infectionDiffY":2.11233,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"003_060","label":"SNPs","pAvg":0.0008,"pSD":0.00253,"pScaled":0.00039,"pRank":79,"nSamples":500,"individualID.1":3,"individualID.2":60,"transmission":false,"snpDist":14,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":401,"infectionDiff":2949,"infectionDiffY":8.07945,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"003_061","label":"SNPs","pAvg":0.00045,"pSD":0.0014,"pScaled":0.00085,"pRank":57,"nSamples":500,"individualID.1":3,"individualID.2":61,"transmission":false,"snpDist":13,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":194,"infectionDiff":2167,"infectionDiffY":5.93699,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"003_062","label":"SNPs","pAvg":0.00219,"pSD":0.00691,"pScaled":0.00058,"pRank":37,"nSamples":500,"individualID.1":3,"individualID.2":62,"transmission":false,"snpDist":12,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":-1071,"infectionDiff":1072,"infectionDiffY":2.93699,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"003_063","label":"SNPs","pAvg":0.00098,"pSD":0.00311,"pScaled":0.00047,"pRank":35,"nSamples":500,"individualID.1":3,"individualID.2":63,"transmission":false,"snpDist":13,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":-1639,"infectionDiff":866,"infectionDiffY":2.3726,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"003_064","label":"SNPs","pAvg":0.00101,"pSD":0.00318,"pScaled":0.00038,"pRank":48,"nSamples":500,"individualID.1":3,"individualID.2":64,"transmission":false,"snpDist":15,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":-857,"infectionDiff":1848,"infectionDiffY":5.06301,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"003_065","label":"SNPs","pAvg":0.00869,"pSD":0.0044,"pScaled":0.00671,"pRank":17,"nSamples":50,"individualID.1":3,"individualID.2":65,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":-849,"infectionDiff":1781,"infectionDiffY":4.87945,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"003_066","label":"SNPs","pAvg":0.00116,"pSD":0.00357,"pScaled":0.00031,"pRank":51,"nSamples":500,"individualID.1":3,"individualID.2":66,"transmission":false,"snpDist":15,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":-702,"infectionDiff":1928,"infectionDiffY":5.28219,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"2","snpClose":false} {"pairID":"003_067","label":"SNPs","pAvg":0.01548,"pSD":0.00406,"pScaled":0.00391,"pRank":31,"nSamples":50,"individualID.1":3,"individualID.2":67,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":420,"infectionDiff":3013,"infectionDiffY":8.25479,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"003_068","label":"SNPs","pAvg":0.00065,"pSD":0.00201,"pScaled":0.00014,"pRank":79,"nSamples":500,"individualID.1":3,"individualID.2":68,"transmission":false,"snpDist":11,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":26,"infectionDiff":2665,"infectionDiffY":7.30137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"003_069","label":"SNPs","pAvg":0.00384,"pSD":0.00119,"pScaled":0.00123,"pRank":43,"nSamples":50,"individualID.1":3,"individualID.2":69,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":71,"infectionDiff":2692,"infectionDiffY":7.37534,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"003_070","label":"SNPs","pAvg":0.01835,"pSD":0.00609,"pScaled":0.00568,"pRank":20,"nSamples":50,"individualID.1":3,"individualID.2":70,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":-1392,"infectionDiff":1109,"infectionDiffY":3.03836,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"003_071","label":"SNPs","pAvg":0.0184,"pSD":0.00603,"pScaled":0.01872,"pRank":22,"nSamples":500,"individualID.1":3,"individualID.2":71,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":126,"infectionDiff":1368,"infectionDiffY":3.74795,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"003_072","label":"SNPs","pAvg":0.0003,"pSD":0.00098,"pScaled":0.00009,"pRank":45,"nSamples":500,"individualID.1":3,"individualID.2":72,"transmission":false,"snpDist":13,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":-1433,"infectionDiff":1287,"infectionDiffY":3.52603,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"003_073","label":"SNPs","pAvg":0.00037,"pSD":0.00116,"pScaled":0.00027,"pRank":60,"nSamples":500,"individualID.1":3,"individualID.2":73,"transmission":false,"snpDist":13,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":-352,"infectionDiff":2038,"infectionDiffY":5.58356,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"3","snpClose":false} {"pairID":"003_074","label":"SNPs","pAvg":0.00337,"pSD":0.00126,"pScaled":0.00185,"pRank":22,"nSamples":50,"individualID.1":3,"individualID.2":74,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":-512,"infectionDiff":1418,"infectionDiffY":3.88493,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"003_075","label":"SNPs","pAvg":0.00027,"pSD":0.00087,"pScaled":0.00118,"pRank":72,"nSamples":500,"individualID.1":3,"individualID.2":75,"transmission":false,"snpDist":18,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":154,"infectionDiff":2992,"infectionDiffY":8.19726,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"003_076","label":"SNPs","pAvg":0.00062,"pSD":0.00196,"pScaled":0.00015,"pRank":79,"nSamples":500,"individualID.1":3,"individualID.2":76,"transmission":false,"snpDist":11,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":389,"infectionDiff":2665,"infectionDiffY":7.30137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"003_077","label":"SNPs","pAvg":0.00731,"pSD":0.00201,"pScaled":0.00162,"pRank":39,"nSamples":50,"individualID.1":3,"individualID.2":77,"transmission":false,"snpDist":10,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":-458,"infectionDiff":2380,"infectionDiffY":6.52055,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"003_078","label":"SNPs","pAvg":0.00766,"pSD":0.00217,"pScaled":0.0017,"pRank":59,"nSamples":50,"individualID.1":3,"individualID.2":78,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":233,"infectionDiff":2693,"infectionDiffY":7.37808,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"003_079","label":"SNPs","pAvg":0.00169,"pSD":0.0005,"pScaled":0.00085,"pRank":44,"nSamples":50,"individualID.1":3,"individualID.2":79,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":-359,"infectionDiff":1977,"infectionDiffY":5.41644,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"003_080","label":"SNPs","pAvg":0.00024,"pSD":0.00076,"pScaled":0.00176,"pRank":49,"nSamples":500,"individualID.1":3,"individualID.2":80,"transmission":false,"snpDist":14,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":-350,"infectionDiff":1909,"infectionDiffY":5.23014,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"003_081","label":"SNPs","pAvg":0.00408,"pSD":0.00115,"pScaled":0.00102,"pRank":45,"nSamples":50,"individualID.1":3,"individualID.2":81,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":366,"infectionDiff":3076,"infectionDiffY":8.4274,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"003_082","label":"SNPs","pAvg":0.00043,"pSD":0.00135,"pScaled":0.00009,"pRank":98,"nSamples":500,"individualID.1":3,"individualID.2":82,"transmission":false,"snpDist":12,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":370,"infectionDiff":3153,"infectionDiffY":8.63836,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"003_083","label":"SNPs","pAvg":0.00695,"pSD":0.00199,"pScaled":0.0027,"pRank":49,"nSamples":50,"individualID.1":3,"individualID.2":83,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":146,"infectionDiff":2623,"infectionDiffY":7.1863,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"003_084","label":"SNPs","pAvg":0.00017,"pSD":0.00054,"pScaled":0.00009,"pRank":79,"nSamples":500,"individualID.1":3,"individualID.2":84,"transmission":false,"snpDist":17,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":389,"infectionDiff":2671,"infectionDiffY":7.31781,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"003_085","label":"SNPs","pAvg":0.00014,"pSD":0.00045,"pScaled":0.00005,"pRank":68,"nSamples":500,"individualID.1":3,"individualID.2":85,"transmission":false,"snpDist":15,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":-499,"infectionDiff":2336,"infectionDiffY":6.4,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"003_086","label":"SNPs","pAvg":0.00039,"pSD":0.00122,"pScaled":0.00012,"pRank":55,"nSamples":500,"individualID.1":3,"individualID.2":86,"transmission":false,"snpDist":12,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":-661,"infectionDiff":1964,"infectionDiffY":5.38082,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"003_087","label":"SNPs","pAvg":0.00066,"pSD":0.00204,"pScaled":0.00053,"pRank":46,"nSamples":500,"individualID.1":3,"individualID.2":87,"transmission":false,"snpDist":13,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":-126,"infectionDiff":2503,"infectionDiffY":6.85753,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"003_088","label":"SNPs","pAvg":0.00038,"pSD":0.00119,"pScaled":0.00007,"pRank":89,"nSamples":500,"individualID.1":3,"individualID.2":88,"transmission":false,"snpDist":11,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-17,"infectionDiff":2838,"infectionDiffY":7.77534,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"003_089","label":"SNPs","pAvg":0.00016,"pSD":0.0005,"pScaled":0.00005,"pRank":83,"nSamples":500,"individualID.1":3,"individualID.2":89,"transmission":false,"snpDist":16,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":275,"infectionDiff":2674,"infectionDiffY":7.32603,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"003_090","label":"SNPs","pAvg":0.00153,"pSD":0.0005,"pScaled":0.0004,"pRank":57,"nSamples":50,"individualID.1":3,"individualID.2":90,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":346,"infectionDiff":2901,"infectionDiffY":7.94795,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"003_091","label":"SNPs","pAvg":0.0004,"pSD":0.00125,"pScaled":0.0002,"pRank":71,"nSamples":500,"individualID.1":3,"individualID.2":91,"transmission":false,"snpDist":16,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":367,"infectionDiff":2492,"infectionDiffY":6.8274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"003_092","label":"SNPs","pAvg":0.00017,"pSD":0.00053,"pScaled":0.00007,"pRank":74,"nSamples":500,"individualID.1":3,"individualID.2":92,"transmission":false,"snpDist":16,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":414,"infectionDiff":2643,"infectionDiffY":7.2411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"003_093","label":"SNPs","pAvg":0.00024,"pSD":0.00075,"pScaled":0.00006,"pRank":81,"nSamples":500,"individualID.1":3,"individualID.2":93,"transmission":false,"snpDist":17,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":251,"infectionDiff":2869,"infectionDiffY":7.86027,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"003_094","label":"SNPs","pAvg":0.00874,"pSD":0.00257,"pScaled":0.00288,"pRank":29,"nSamples":50,"individualID.1":3,"individualID.2":94,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":297,"infectionDiff":3140,"infectionDiffY":8.60274,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"003_095","label":"SNPs","pAvg":0.00066,"pSD":0.00205,"pScaled":0.00033,"pRank":46,"nSamples":500,"individualID.1":3,"individualID.2":95,"transmission":false,"snpDist":15,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":-121,"infectionDiff":2572,"infectionDiffY":7.04658,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"003_096","label":"SNPs","pAvg":0.00428,"pSD":0.00132,"pScaled":0.0015,"pRank":30,"nSamples":50,"individualID.1":3,"individualID.2":96,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-26,"infectionDiff":2804,"infectionDiffY":7.68219,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"003_097","label":"SNPs","pAvg":0.00406,"pSD":0.00112,"pScaled":0.00091,"pRank":57,"nSamples":50,"individualID.1":3,"individualID.2":97,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":217,"infectionDiff":2960,"infectionDiffY":8.10959,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"003_098","label":"SNPs","pAvg":0.00029,"pSD":0.00093,"pScaled":0.00008,"pRank":83,"nSamples":500,"individualID.1":3,"individualID.2":98,"transmission":false,"snpDist":16,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":36,"infectionDiff":2733,"infectionDiffY":7.48767,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"003_099","label":"SNPs","pAvg":0.0009,"pSD":0.00282,"pScaled":0.00031,"pRank":59,"nSamples":500,"individualID.1":3,"individualID.2":99,"transmission":false,"snpDist":13,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":19,"infectionDiff":2597,"infectionDiffY":7.11507,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"003_100","label":"SNPs","pAvg":0.00786,"pSD":0.00215,"pScaled":0.00232,"pRank":51,"nSamples":50,"individualID.1":3,"individualID.2":100,"transmission":false,"infectionDate.1":"1990-12-11 19:24:08","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1998-10-30 22:42:57","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":218,"infectionDiff":2975,"infectionDiffY":8.15068,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"004_003","label":"SNPs","pAvg":0.01044,"pSD":0.00358,"pScaled":0.03294,"pRank":12,"nSamples":500,"individualID.1":4,"individualID.2":3,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1990-12-11 19:24:08","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1998-10-30 22:42:57","sampleDiff":3946,"infectionDiff":1407,"infectionDiffY":3.85479,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"004_006","label":"SNPs","pAvg":0.00492,"pSD":0.00122,"pScaled":0.00314,"pRank":25,"nSamples":50,"individualID.1":4,"individualID.2":6,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":1663,"infectionDiff":1965,"infectionDiffY":5.38356,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_007","label":"SNPs","pAvg":0.08404,"pSD":0.01593,"pScaled":0.02829,"pRank":5,"nSamples":50,"individualID.1":4,"individualID.2":7,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1987-07-15 05:58:16","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1988-02-23 12:34:50","sampleDiff":44,"infectionDiff":161,"infectionDiffY":0.4411,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"004_009","label":"SNPs","pAvg":0.01012,"pSD":0.00244,"pScaled":0.0451,"pRank":5,"nSamples":500,"individualID.1":4,"individualID.2":9,"transmission":false,"snpDist":9,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":4186,"infectionDiff":2648,"infectionDiffY":7.25479,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"004_010","label":"SNPs","pAvg":0.01514,"pSD":0.00714,"pScaled":0.01097,"pRank":17,"nSamples":50,"individualID.1":4,"individualID.2":10,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":1637,"infectionDiff":1689,"infectionDiffY":4.6274,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"004_011","label":"SNPs","pAvg":0.72732,"pSD":0.43413,"pScaled":0.29066,"pRank":3,"nSamples":176,"individualID.1":4,"individualID.2":11,"transmission":false,"snpDist":2,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1988-04-18 02:31:21","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1991-10-25 12:28:14","sampleDiff":1384,"infectionDiff":439,"infectionDiffY":1.20274,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"004_012","label":"SNPs","pAvg":0.64601,"pSD":0.45241,"pScaled":0.16193,"pRank":2,"nSamples":131,"individualID.1":4,"individualID.2":12,"transmission":false,"snpDist":1,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1988-04-12 22:57:51","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1988-09-04 19:08:48","sampleDiff":238,"infectionDiff":434,"infectionDiffY":1.18904,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"004_013","label":"SNPs","pAvg":0.7304,"pSD":0.42922,"pScaled":0.25286,"pRank":2,"nSamples":176,"individualID.1":4,"individualID.2":13,"transmission":false,"snpDist":1,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1987-03-23 16:58:33","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1987-07-30 23:29:57","sampleDiff":-164,"infectionDiff":48,"infectionDiffY":0.13151,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"2","snpClose":true} {"pairID":"004_014","label":"SNPs","pAvg":0.00713,"pSD":0.00218,"pScaled":0.00392,"pRank":27,"nSamples":50,"individualID.1":4,"individualID.2":14,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":2217,"infectionDiff":2225,"infectionDiffY":6.09589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"004_015","label":"SNPs","pAvg":0.7105,"pSD":0.4442,"pScaled":0.27853,"pRank":3,"nSamples":167,"individualID.1":4,"individualID.2":15,"transmission":false,"snpDist":2,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1988-08-20 08:24:18","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1992-08-15 08:05:31","sampleDiff":1679,"infectionDiff":563,"infectionDiffY":1.54247,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"004_016","label":"SNPs","pAvg":0.03387,"pSD":0.01072,"pScaled":0.08442,"pRank":6,"nSamples":500,"individualID.1":4,"individualID.2":16,"transmission":false,"snpDist":4,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1989-04-18 04:17:39","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1995-12-16 04:24:53","sampleDiff":2897,"infectionDiff":804,"infectionDiffY":2.20274,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"004_017","label":"SNPs","pAvg":0.00818,"pSD":0.00214,"pScaled":0.01141,"pRank":19,"nSamples":500,"individualID.1":4,"individualID.2":17,"transmission":false,"snpDist":5,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":3355,"infectionDiff":1997,"infectionDiffY":5.47123,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"004_018","label":"SNPs","pAvg":0.01699,"pSD":0.004,"pScaled":0.01925,"pRank":19,"nSamples":500,"individualID.1":4,"individualID.2":18,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":2109,"infectionDiff":2422,"infectionDiffY":6.63562,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"004_019","label":"SNPs","pAvg":0.05031,"pSD":0.01057,"pScaled":0.0457,"pRank":2,"nSamples":50,"individualID.1":4,"individualID.2":19,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1987-12-12 09:17:01","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1991-09-26 03:18:54","sampleDiff":1355,"infectionDiff":311,"infectionDiffY":0.85205,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"004_020","label":"SNPs","pAvg":0.78097,"pSD":0.406,"pScaled":0.24468,"pRank":1,"nSamples":221,"individualID.1":4,"individualID.2":20,"transmission":false,"snpDist":1,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1987-03-30 17:23:41","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1994-08-15 09:04:39","sampleDiff":2409,"infectionDiff":55,"infectionDiffY":0.15068,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":true} {"pairID":"004_021","label":"SNPs","pAvg":0.00769,"pSD":0.00215,"pScaled":0.00734,"pRank":28,"nSamples":500,"individualID.1":4,"individualID.2":21,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":3554,"infectionDiff":2419,"infectionDiffY":6.6274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"004_022","label":"SNPs","pAvg":0.03104,"pSD":0.00806,"pScaled":0.06056,"pRank":9,"nSamples":500,"individualID.1":4,"individualID.2":22,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1989-06-06 04:07:23","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1991-10-22 14:29:51","sampleDiff":1381,"infectionDiff":853,"infectionDiffY":2.33699,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"004_023","label":"SNPs","pAvg":0.00954,"pSD":0.00236,"pScaled":0.00425,"pRank":39,"nSamples":50,"individualID.1":4,"individualID.2":23,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":4343,"infectionDiff":4187,"infectionDiffY":11.47123,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"004_024","label":"SNPs","pAvg":0.00489,"pSD":0.00197,"pScaled":0.00378,"pRank":18,"nSamples":50,"individualID.1":4,"individualID.2":24,"transmission":false,"snpDist":4,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1991-02-07 21:59:42","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1992-10-05 23:05:30","sampleDiff":1730,"infectionDiff":1465,"infectionDiffY":4.0137,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_025","label":"SNPs","pAvg":0.5822,"pSD":0.47117,"pScaled":0.1321,"pRank":3,"nSamples":113,"individualID.1":4,"individualID.2":25,"transmission":false,"snpDist":1,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1989-07-09 14:49:21","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1990-01-24 23:05:50","sampleDiff":745,"infectionDiff":887,"infectionDiffY":2.43014,"timeCat":"3","Z1":"1","Z2":"1","Z3":"3","Z4":"1","snpClose":true} {"pairID":"004_026","label":"SNPs","pAvg":0.00444,"pSD":0.00094,"pScaled":0.00156,"pRank":46,"nSamples":50,"individualID.1":4,"individualID.2":26,"transmission":false,"snpDist":4,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":3947,"infectionDiff":3484,"infectionDiffY":9.54521,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_027","label":"SNPs","pAvg":0.00808,"pSD":0.00221,"pScaled":0.00288,"pRank":49,"nSamples":50,"individualID.1":4,"individualID.2":27,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":4120,"infectionDiff":4073,"infectionDiffY":11.1589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"004_028","label":"SNPs","pAvg":0.00948,"pSD":0.00228,"pScaled":0.00265,"pRank":38,"nSamples":50,"individualID.1":4,"individualID.2":28,"transmission":false,"snpDist":3,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":3336,"infectionDiff":2897,"infectionDiffY":7.93699,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"004_029","label":"SNPs","pAvg":0.01862,"pSD":0.00533,"pScaled":0.04597,"pRank":8,"nSamples":500,"individualID.1":4,"individualID.2":29,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1990-12-27 23:28:20","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1992-03-01 23:20:54","sampleDiff":1512,"infectionDiff":1423,"infectionDiffY":3.89863,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"004_030","label":"SNPs","pAvg":0.00439,"pSD":0.00098,"pScaled":0.00307,"pRank":23,"nSamples":50,"individualID.1":4,"individualID.2":30,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":1587,"infectionDiff":1904,"infectionDiffY":5.21644,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_031","label":"SNPs","pAvg":0.01985,"pSD":0.00552,"pScaled":0.03275,"pRank":10,"nSamples":500,"individualID.1":4,"individualID.2":31,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1991-01-03 16:49:07","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1991-07-17 03:37:35","sampleDiff":1284,"infectionDiff":1430,"infectionDiffY":3.91781,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"004_032","label":"SNPs","pAvg":0.01562,"pSD":0.00392,"pScaled":0.01065,"pRank":15,"nSamples":50,"individualID.1":4,"individualID.2":32,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":3017,"infectionDiff":1850,"infectionDiffY":5.06849,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"004_033","label":"SNPs","pAvg":0.00507,"pSD":0.00129,"pScaled":0.00231,"pRank":34,"nSamples":50,"individualID.1":4,"individualID.2":33,"transmission":false,"snpDist":6,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":3564,"infectionDiff":3755,"infectionDiffY":10.28767,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_034","label":"SNPs","pAvg":0.00501,"pSD":0.0021,"pScaled":0.01685,"pRank":11,"nSamples":500,"individualID.1":4,"individualID.2":34,"transmission":false,"snpDist":7,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":2586,"infectionDiff":1469,"infectionDiffY":4.02466,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_035","label":"SNPs","pAvg":0.01727,"pSD":0.00393,"pScaled":0.00449,"pRank":24,"nSamples":50,"individualID.1":4,"individualID.2":35,"transmission":false,"snpDist":3,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":3526,"infectionDiff":2552,"infectionDiffY":6.99178,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"004_036","label":"SNPs","pAvg":0.00755,"pSD":0.0019,"pScaled":0.00204,"pRank":50,"nSamples":50,"individualID.1":4,"individualID.2":36,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":3326,"infectionDiff":3363,"infectionDiffY":9.2137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"004_037","label":"SNPs","pAvg":0.00559,"pSD":0.00138,"pScaled":0.00564,"pRank":32,"nSamples":500,"individualID.1":4,"individualID.2":37,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":3713,"infectionDiff":2885,"infectionDiffY":7.90411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"004_038","label":"SNPs","pAvg":0.00451,"pSD":0.00102,"pScaled":0.00536,"pRank":28,"nSamples":500,"individualID.1":4,"individualID.2":38,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":2775,"infectionDiff":2530,"infectionDiffY":6.93151,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_039","label":"SNPs","pAvg":0.00451,"pSD":0.00102,"pScaled":0.00974,"pRank":20,"nSamples":500,"individualID.1":4,"individualID.2":39,"transmission":false,"snpDist":9,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":2940,"infectionDiff":1975,"infectionDiffY":5.41096,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_040","label":"SNPs","pAvg":0.00885,"pSD":0.00232,"pScaled":0.00792,"pRank":34,"nSamples":500,"individualID.1":4,"individualID.2":40,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":3348,"infectionDiff":3619,"infectionDiffY":9.91507,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"004_041","label":"SNPs","pAvg":0.00501,"pSD":0.0021,"pScaled":0.01302,"pRank":19,"nSamples":500,"individualID.1":4,"individualID.2":41,"transmission":false,"snpDist":7,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":4198,"infectionDiff":1819,"infectionDiffY":4.98356,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_042","label":"SNPs","pAvg":0.00814,"pSD":0.0033,"pScaled":0.003,"pRank":17,"nSamples":50,"individualID.1":4,"individualID.2":42,"transmission":false,"snpDist":3,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":1601,"infectionDiff":1471,"infectionDiffY":4.03014,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"004_043","label":"SNPs","pAvg":0.01817,"pSD":0.00443,"pScaled":0.02452,"pRank":14,"nSamples":500,"individualID.1":4,"individualID.2":43,"transmission":false,"snpDist":7,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":4323,"infectionDiff":2238,"infectionDiffY":6.13151,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"004_044","label":"SNPs","pAvg":0.00934,"pSD":0.00217,"pScaled":0.00251,"pRank":17,"nSamples":50,"individualID.1":4,"individualID.2":44,"transmission":false,"snpDist":4,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":1943,"infectionDiff":2139,"infectionDiffY":5.86027,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"004_045","label":"SNPs","pAvg":0.01135,"pSD":0.00282,"pScaled":0.00687,"pRank":23,"nSamples":50,"individualID.1":4,"individualID.2":45,"transmission":false,"snpDist":7,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":3722,"infectionDiff":3130,"infectionDiffY":8.57534,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"004_046","label":"SNPs","pAvg":0.00559,"pSD":0.00127,"pScaled":0.00324,"pRank":26,"nSamples":50,"individualID.1":4,"individualID.2":46,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":2626,"infectionDiff":2084,"infectionDiffY":5.70959,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"004_047","label":"SNPs","pAvg":0.01645,"pSD":0.00405,"pScaled":0.00355,"pRank":27,"nSamples":50,"individualID.1":4,"individualID.2":47,"transmission":false,"snpDist":5,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":2573,"infectionDiff":2815,"infectionDiffY":7.71233,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"004_048","label":"SNPs","pAvg":0.00923,"pSD":0.00216,"pScaled":0.00407,"pRank":25,"nSamples":50,"individualID.1":4,"individualID.2":48,"transmission":false,"snpDist":6,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":2855,"infectionDiff":2349,"infectionDiffY":6.43562,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"004_049","label":"SNPs","pAvg":0.00885,"pSD":0.00224,"pScaled":0.0058,"pRank":15,"nSamples":50,"individualID.1":4,"individualID.2":49,"transmission":false,"snpDist":6,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":2591,"infectionDiff":1967,"infectionDiffY":5.38904,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"004_050","label":"SNPs","pAvg":0.00434,"pSD":0.00185,"pScaled":0.01894,"pRank":14,"nSamples":500,"individualID.1":4,"individualID.2":50,"transmission":false,"snpDist":4,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":2445,"infectionDiff":1640,"infectionDiffY":4.49315,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_051","label":"SNPs","pAvg":0.01767,"pSD":0.00422,"pScaled":0.00837,"pRank":25,"nSamples":50,"individualID.1":4,"individualID.2":51,"transmission":false,"snpDist":4,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":2359,"infectionDiff":2607,"infectionDiffY":7.14247,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"004_052","label":"SNPs","pAvg":0.00454,"pSD":0.0011,"pScaled":0.0017,"pRank":48,"nSamples":50,"individualID.1":4,"individualID.2":52,"transmission":false,"snpDist":5,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":4192,"infectionDiff":3635,"infectionDiffY":9.9589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_053","label":"SNPs","pAvg":0.00547,"pSD":0.0013,"pScaled":0.00365,"pRank":26,"nSamples":50,"individualID.1":4,"individualID.2":53,"transmission":false,"snpDist":7,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":2880,"infectionDiff":3099,"infectionDiffY":8.49041,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_054","label":"SNPs","pAvg":0.00543,"pSD":0.00143,"pScaled":0.00141,"pRank":36,"nSamples":50,"individualID.1":4,"individualID.2":54,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":4051,"infectionDiff":4023,"infectionDiffY":11.02192,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_055","label":"SNPs","pAvg":0.01774,"pSD":0.00444,"pScaled":0.00545,"pRank":11,"nSamples":50,"individualID.1":4,"individualID.2":55,"transmission":false,"snpDist":7,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":3034,"infectionDiff":3291,"infectionDiffY":9.01644,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"004_056","label":"SNPs","pAvg":0.00445,"pSD":0.00098,"pScaled":0.00106,"pRank":35,"nSamples":50,"individualID.1":4,"individualID.2":56,"transmission":false,"snpDist":7,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":3458,"infectionDiff":3375,"infectionDiffY":9.24658,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_057","label":"SNPs","pAvg":0.00465,"pSD":0.00103,"pScaled":0.00093,"pRank":39,"nSamples":50,"individualID.1":4,"individualID.2":57,"transmission":false,"snpDist":8,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":4021,"infectionDiff":4026,"infectionDiffY":11.03014,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_058","label":"SNPs","pAvg":0.00451,"pSD":0.00102,"pScaled":0.00445,"pRank":42,"nSamples":500,"individualID.1":4,"individualID.2":58,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":4306,"infectionDiff":3714,"infectionDiffY":10.17534,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_059","label":"SNPs","pAvg":0.01576,"pSD":0.00395,"pScaled":0.02266,"pRank":16,"nSamples":500,"individualID.1":4,"individualID.2":59,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":3686,"infectionDiff":2178,"infectionDiffY":5.96712,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"004_060","label":"SNPs","pAvg":0.00872,"pSD":0.00203,"pScaled":0.00423,"pRank":39,"nSamples":50,"individualID.1":4,"individualID.2":60,"transmission":false,"snpDist":7,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":4347,"infectionDiff":4356,"infectionDiffY":11.93425,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"004_061","label":"SNPs","pAvg":0.00162,"pSD":0.00047,"pScaled":0.00308,"pRank":41,"nSamples":500,"individualID.1":4,"individualID.2":61,"transmission":false,"snpDist":6,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":4140,"infectionDiff":3574,"infectionDiffY":9.79178,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"004_062","label":"SNPs","pAvg":0.01577,"pSD":0.00402,"pScaled":0.00417,"pRank":23,"nSamples":50,"individualID.1":4,"individualID.2":62,"transmission":false,"snpDist":5,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":2875,"infectionDiff":2478,"infectionDiffY":6.78904,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"004_063","label":"SNPs","pAvg":0.00455,"pSD":0.00087,"pScaled":0.00219,"pRank":22,"nSamples":50,"individualID.1":4,"individualID.2":63,"transmission":false,"snpDist":6,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":2307,"infectionDiff":2273,"infectionDiffY":6.2274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_064","label":"SNPs","pAvg":0.00582,"pSD":0.00136,"pScaled":0.00221,"pRank":22,"nSamples":50,"individualID.1":4,"individualID.2":64,"transmission":false,"snpDist":8,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":3090,"infectionDiff":3255,"infectionDiffY":8.91781,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"004_065","label":"SNPs","pAvg":0.00166,"pSD":0.00053,"pScaled":0.00128,"pRank":38,"nSamples":50,"individualID.1":4,"individualID.2":65,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":3098,"infectionDiff":3188,"infectionDiffY":8.73425,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"004_066","label":"SNPs","pAvg":0.00952,"pSD":0.00244,"pScaled":0.00251,"pRank":24,"nSamples":50,"individualID.1":4,"individualID.2":66,"transmission":false,"snpDist":8,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":3245,"infectionDiff":3335,"infectionDiffY":9.13699,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"004_067","label":"SNPs","pAvg":0.00459,"pSD":0.00106,"pScaled":0.00116,"pRank":58,"nSamples":50,"individualID.1":4,"individualID.2":67,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":4366,"infectionDiff":4420,"infectionDiffY":12.10959,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_068","label":"SNPs","pAvg":0.00788,"pSD":0.00209,"pScaled":0.00172,"pRank":49,"nSamples":50,"individualID.1":4,"individualID.2":68,"transmission":false,"snpDist":4,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":3973,"infectionDiff":4072,"infectionDiffY":11.15616,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"004_069","label":"SNPs","pAvg":0.0017,"pSD":0.00046,"pScaled":0.00055,"pRank":58,"nSamples":50,"individualID.1":4,"individualID.2":69,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":4017,"infectionDiff":4099,"infectionDiffY":11.23014,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"004_070","label":"SNPs","pAvg":0.00787,"pSD":0.00205,"pScaled":0.00244,"pRank":28,"nSamples":50,"individualID.1":4,"individualID.2":70,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":2554,"infectionDiff":2516,"infectionDiffY":6.89315,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"004_071","label":"SNPs","pAvg":0.00769,"pSD":0.00215,"pScaled":0.00782,"pRank":26,"nSamples":500,"individualID.1":4,"individualID.2":71,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":4073,"infectionDiff":2775,"infectionDiffY":7.60274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"004_072","label":"SNPs","pAvg":0.01012,"pSD":0.00269,"pScaled":0.00308,"pRank":19,"nSamples":50,"individualID.1":4,"individualID.2":72,"transmission":false,"snpDist":6,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":2513,"infectionDiff":2694,"infectionDiffY":7.38082,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"004_073","label":"SNPs","pAvg":0.00194,"pSD":0.00057,"pScaled":0.00143,"pRank":36,"nSamples":50,"individualID.1":4,"individualID.2":73,"transmission":false,"snpDist":6,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":3594,"infectionDiff":3445,"infectionDiffY":9.43836,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"004_074","label":"SNPs","pAvg":0.00149,"pSD":0.00046,"pScaled":0.00082,"pRank":34,"nSamples":50,"individualID.1":4,"individualID.2":74,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":3435,"infectionDiff":2825,"infectionDiffY":7.73973,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"004_075","label":"SNPs","pAvg":0.00018,"pSD":0.00056,"pScaled":0.00078,"pRank":77,"nSamples":500,"individualID.1":4,"individualID.2":75,"transmission":false,"snpDist":11,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":4101,"infectionDiff":4398,"infectionDiffY":12.04932,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"004_076","label":"SNPs","pAvg":0.00988,"pSD":0.00263,"pScaled":0.00242,"pRank":35,"nSamples":50,"individualID.1":4,"individualID.2":76,"transmission":false,"snpDist":4,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":4336,"infectionDiff":4072,"infectionDiffY":11.15616,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"004_077","label":"SNPs","pAvg":0.00407,"pSD":0.00085,"pScaled":0.0009,"pRank":58,"nSamples":50,"individualID.1":4,"individualID.2":77,"transmission":false,"snpDist":3,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":3488,"infectionDiff":3787,"infectionDiffY":10.37534,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_078","label":"SNPs","pAvg":0.00852,"pSD":0.00217,"pScaled":0.00189,"pRank":55,"nSamples":50,"individualID.1":4,"individualID.2":78,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":4179,"infectionDiff":4100,"infectionDiffY":11.23288,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"004_079","label":"SNPs","pAvg":0.00455,"pSD":0.00101,"pScaled":0.00229,"pRank":25,"nSamples":50,"individualID.1":4,"individualID.2":79,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":3588,"infectionDiff":3383,"infectionDiffY":9.26849,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_080","label":"SNPs","pAvg":0.00173,"pSD":0.00051,"pScaled":0.01267,"pRank":20,"nSamples":500,"individualID.1":4,"individualID.2":80,"transmission":false,"snpDist":8,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":3597,"infectionDiff":3316,"infectionDiffY":9.08493,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"004_081","label":"SNPs","pAvg":0.00188,"pSD":0.00059,"pScaled":0.00047,"pRank":80,"nSamples":50,"individualID.1":4,"individualID.2":81,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":4312,"infectionDiff":4482,"infectionDiffY":12.27945,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"004_082","label":"SNPs","pAvg":0.00754,"pSD":0.00214,"pScaled":0.00164,"pRank":43,"nSamples":50,"individualID.1":4,"individualID.2":82,"transmission":false,"snpDist":5,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":4317,"infectionDiff":4560,"infectionDiffY":12.49315,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"004_083","label":"SNPs","pAvg":0.00802,"pSD":0.00206,"pScaled":0.00312,"pRank":45,"nSamples":50,"individualID.1":4,"individualID.2":83,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":4092,"infectionDiff":4029,"infectionDiffY":11.03836,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"004_084","label":"SNPs","pAvg":0.00473,"pSD":0.00099,"pScaled":0.00239,"pRank":15,"nSamples":50,"individualID.1":4,"individualID.2":84,"transmission":false,"snpDist":10,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":4335,"infectionDiff":4077,"infectionDiffY":11.16986,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_085","label":"SNPs","pAvg":0.00526,"pSD":0.00126,"pScaled":0.0018,"pRank":11,"nSamples":50,"individualID.1":4,"individualID.2":85,"transmission":false,"snpDist":8,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":3447,"infectionDiff":3743,"infectionDiffY":10.25479,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_086","label":"SNPs","pAvg":0.0017,"pSD":0.00047,"pScaled":0.00054,"pRank":38,"nSamples":50,"individualID.1":4,"individualID.2":86,"transmission":false,"snpDist":5,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":3285,"infectionDiff":3371,"infectionDiffY":9.23562,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"004_087","label":"SNPs","pAvg":0.002,"pSD":0.0006,"pScaled":0.00163,"pRank":31,"nSamples":50,"individualID.1":4,"individualID.2":87,"transmission":false,"snpDist":9,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":3820,"infectionDiff":3910,"infectionDiffY":10.71233,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"004_088","label":"SNPs","pAvg":0.00877,"pSD":0.00244,"pScaled":0.0017,"pRank":34,"nSamples":50,"individualID.1":4,"individualID.2":88,"transmission":false,"snpDist":4,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":3930,"infectionDiff":4245,"infectionDiffY":11.63014,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"004_089","label":"SNPs","pAvg":0.00551,"pSD":0.00139,"pScaled":0.00177,"pRank":13,"nSamples":50,"individualID.1":4,"individualID.2":89,"transmission":false,"snpDist":9,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":4221,"infectionDiff":4081,"infectionDiffY":11.18082,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_090","label":"SNPs","pAvg":0.00535,"pSD":0.00124,"pScaled":0.00139,"pRank":23,"nSamples":50,"individualID.1":4,"individualID.2":90,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":4292,"infectionDiff":4308,"infectionDiffY":11.80274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_091","label":"SNPs","pAvg":0.00921,"pSD":0.00242,"pScaled":0.00462,"pRank":11,"nSamples":50,"individualID.1":4,"individualID.2":91,"transmission":false,"snpDist":9,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":4313,"infectionDiff":3899,"infectionDiffY":10.68219,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"004_092","label":"SNPs","pAvg":0.00455,"pSD":0.0011,"pScaled":0.00185,"pRank":15,"nSamples":50,"individualID.1":4,"individualID.2":92,"transmission":false,"snpDist":9,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":4360,"infectionDiff":4050,"infectionDiffY":11.09589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_093","label":"SNPs","pAvg":0.00587,"pSD":0.00163,"pScaled":0.00159,"pRank":18,"nSamples":50,"individualID.1":4,"individualID.2":93,"transmission":false,"snpDist":10,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":4197,"infectionDiff":4276,"infectionDiffY":11.71507,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"004_094","label":"SNPs","pAvg":0.00179,"pSD":0.0005,"pScaled":0.00059,"pRank":60,"nSamples":50,"individualID.1":4,"individualID.2":94,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":4243,"infectionDiff":4547,"infectionDiffY":12.45753,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"004_095","label":"SNPs","pAvg":0.00199,"pSD":0.00055,"pScaled":0.00101,"pRank":32,"nSamples":50,"individualID.1":4,"individualID.2":95,"transmission":false,"snpDist":9,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":3826,"infectionDiff":3979,"infectionDiffY":10.90137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"004_096","label":"SNPs","pAvg":0.00178,"pSD":0.00045,"pScaled":0.00063,"pRank":51,"nSamples":50,"individualID.1":4,"individualID.2":96,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":3920,"infectionDiff":4211,"infectionDiffY":11.53699,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"004_097","label":"SNPs","pAvg":0.00953,"pSD":0.00252,"pScaled":0.00214,"pRank":23,"nSamples":50,"individualID.1":4,"individualID.2":97,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":4163,"infectionDiff":4367,"infectionDiffY":11.96438,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"004_098","label":"SNPs","pAvg":0.00526,"pSD":0.0014,"pScaled":0.00149,"pRank":16,"nSamples":50,"individualID.1":4,"individualID.2":98,"transmission":false,"snpDist":9,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":3982,"infectionDiff":4140,"infectionDiffY":11.34247,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"004_099","label":"SNPs","pAvg":0.00154,"pSD":0.0005,"pScaled":0.00052,"pRank":49,"nSamples":50,"individualID.1":4,"individualID.2":99,"transmission":false,"snpDist":6,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":3965,"infectionDiff":4004,"infectionDiffY":10.96986,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"004_100","label":"SNPs","pAvg":0.00898,"pSD":0.00161,"pScaled":0.00265,"pRank":42,"nSamples":50,"individualID.1":4,"individualID.2":100,"transmission":false,"infectionDate.1":"1987-02-03 23:11:47","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1988-01-10 13:17:28","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":4164,"infectionDiff":4382,"infectionDiffY":12.00548,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"005_003","label":"SNPs","pAvg":0.00909,"pSD":0.00409,"pScaled":0.02868,"pRank":13,"nSamples":500,"individualID.1":5,"individualID.2":3,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1990-12-11 19:24:08","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1998-10-30 22:42:57","sampleDiff":3691,"infectionDiff":1505,"infectionDiffY":4.12329,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"005_004","label":"SNPs","pAvg":0.04838,"pSD":0.00911,"pScaled":0.02776,"pRank":4,"nSamples":50,"individualID.1":5,"individualID.2":4,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1987-02-03 23:11:47","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1988-01-10 13:17:28","sampleDiff":-255,"infectionDiff":98,"infectionDiffY":0.26849,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"005_006","label":"SNPs","pAvg":0.00689,"pSD":0.00202,"pScaled":0.0044,"pRank":20,"nSamples":50,"individualID.1":5,"individualID.2":6,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":1407,"infectionDiff":2063,"infectionDiffY":5.65205,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"005_007","label":"SNPs","pAvg":0.0589,"pSD":0.01297,"pScaled":0.01983,"pRank":6,"nSamples":50,"individualID.1":5,"individualID.2":7,"transmission":true,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1987-07-15 05:58:16","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1988-02-23 12:34:50","sampleDiff":-211,"infectionDiff":259,"infectionDiffY":0.70959,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"005_008","label":"SNPs","pAvg":0.08824,"pSD":0.0183,"pScaled":0.45779,"pRank":1,"nSamples":500,"individualID.1":5,"individualID.2":8,"transmission":true,"snpDist":5,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1986-12-18 07:49:26","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1990-04-14 16:45:48","sampleDiff":570,"infectionDiff":50,"infectionDiffY":0.13699,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"005_009","label":"SNPs","pAvg":0.01472,"pSD":0.00346,"pScaled":0.06562,"pRank":2,"nSamples":500,"individualID.1":5,"individualID.2":9,"transmission":false,"snpDist":10,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":3931,"infectionDiff":2746,"infectionDiffY":7.52329,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"005_010","label":"SNPs","pAvg":0.00954,"pSD":0.00409,"pScaled":0.00691,"pRank":18,"nSamples":50,"individualID.1":5,"individualID.2":10,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":1382,"infectionDiff":1787,"infectionDiffY":4.89589,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"005_011","label":"SNPs","pAvg":0.0209,"pSD":0.00421,"pScaled":0.00835,"pRank":8,"nSamples":50,"individualID.1":5,"individualID.2":11,"transmission":false,"snpDist":3,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1988-04-18 02:31:21","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1991-10-25 12:28:14","sampleDiff":1129,"infectionDiff":537,"infectionDiffY":1.47123,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_012","label":"SNPs","pAvg":0.57441,"pSD":0.47988,"pScaled":0.14398,"pRank":4,"nSamples":113,"individualID.1":5,"individualID.2":12,"transmission":false,"snpDist":2,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1988-04-12 22:57:51","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1988-09-04 19:08:48","sampleDiff":-17,"infectionDiff":532,"infectionDiffY":1.45753,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"005_013","label":"SNPs","pAvg":0.77697,"pSD":0.39122,"pScaled":0.26898,"pRank":1,"nSamples":203,"individualID.1":5,"individualID.2":13,"transmission":false,"snpDist":2,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1987-03-23 16:58:33","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1987-07-30 23:29:57","sampleDiff":-419,"infectionDiff":146,"infectionDiffY":0.4,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"1","snpClose":true} {"pairID":"005_014","label":"SNPs","pAvg":0.00465,"pSD":0.00133,"pScaled":0.00255,"pRank":31,"nSamples":50,"individualID.1":5,"individualID.2":14,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":1962,"infectionDiff":2323,"infectionDiffY":6.36438,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_015","label":"SNPs","pAvg":0.02313,"pSD":0.00674,"pScaled":0.00907,"pRank":9,"nSamples":50,"individualID.1":5,"individualID.2":15,"transmission":false,"snpDist":3,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1988-08-20 08:24:18","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1992-08-15 08:05:31","sampleDiff":1424,"infectionDiff":661,"infectionDiffY":1.81096,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_016","label":"SNPs","pAvg":0.04857,"pSD":0.01426,"pScaled":0.12105,"pRank":1,"nSamples":500,"individualID.1":5,"individualID.2":16,"transmission":false,"snpDist":5,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1989-04-18 04:17:39","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1995-12-16 04:24:53","sampleDiff":2642,"infectionDiff":902,"infectionDiffY":2.47123,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"005_017","label":"SNPs","pAvg":0.00559,"pSD":0.00138,"pScaled":0.0078,"pRank":27,"nSamples":500,"individualID.1":5,"individualID.2":17,"transmission":false,"snpDist":6,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":3100,"infectionDiff":2095,"infectionDiffY":5.73973,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"005_018","label":"SNPs","pAvg":0.0087,"pSD":0.00172,"pScaled":0.00986,"pRank":28,"nSamples":500,"individualID.1":5,"individualID.2":18,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":1854,"infectionDiff":2520,"infectionDiffY":6.90411,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"005_019","label":"SNPs","pAvg":0.02024,"pSD":0.00408,"pScaled":0.01838,"pRank":6,"nSamples":50,"individualID.1":5,"individualID.2":19,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1987-12-12 09:17:01","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1991-09-26 03:18:54","sampleDiff":1100,"infectionDiff":409,"infectionDiffY":1.12055,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_020","label":"SNPs","pAvg":0.38015,"pSD":0.45854,"pScaled":0.1191,"pRank":5,"nSamples":77,"individualID.1":5,"individualID.2":20,"transmission":false,"snpDist":2,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1987-03-30 17:23:41","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1994-08-15 09:04:39","sampleDiff":2154,"infectionDiff":153,"infectionDiffY":0.41918,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"1","snpClose":true} {"pairID":"005_021","label":"SNPs","pAvg":0.00524,"pSD":0.00131,"pScaled":0.005,"pRank":33,"nSamples":500,"individualID.1":5,"individualID.2":21,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":3299,"infectionDiff":2517,"infectionDiffY":6.89589,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_022","label":"SNPs","pAvg":0.01621,"pSD":0.0044,"pScaled":0.03162,"pRank":13,"nSamples":500,"individualID.1":5,"individualID.2":22,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1989-06-06 04:07:23","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1991-10-22 14:29:51","sampleDiff":1126,"infectionDiff":951,"infectionDiffY":2.60548,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"005_023","label":"SNPs","pAvg":0.00478,"pSD":0.00112,"pScaled":0.00213,"pRank":60,"nSamples":50,"individualID.1":5,"individualID.2":23,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":4088,"infectionDiff":4285,"infectionDiffY":11.73973,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"005_024","label":"SNPs","pAvg":0.00776,"pSD":0.00374,"pScaled":0.00599,"pRank":15,"nSamples":50,"individualID.1":5,"individualID.2":24,"transmission":false,"snpDist":5,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1991-02-07 21:59:42","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1992-10-05 23:05:30","sampleDiff":1475,"infectionDiff":1563,"infectionDiffY":4.28219,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"005_025","label":"SNPs","pAvg":0.28572,"pSD":0.43182,"pScaled":0.06483,"pRank":8,"nSamples":68,"individualID.1":5,"individualID.2":25,"transmission":false,"snpDist":2,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1989-07-09 14:49:21","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1990-01-24 23:05:50","sampleDiff":490,"infectionDiff":985,"infectionDiffY":2.69863,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"2","snpClose":true} {"pairID":"005_026","label":"SNPs","pAvg":0.00892,"pSD":0.00229,"pScaled":0.00313,"pRank":24,"nSamples":50,"individualID.1":5,"individualID.2":26,"transmission":false,"snpDist":5,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":3692,"infectionDiff":3582,"infectionDiffY":9.8137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"005_027","label":"SNPs","pAvg":0.00548,"pSD":0.00142,"pScaled":0.00196,"pRank":65,"nSamples":50,"individualID.1":5,"individualID.2":27,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":3865,"infectionDiff":4171,"infectionDiffY":11.4274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_028","label":"SNPs","pAvg":0.00473,"pSD":0.00114,"pScaled":0.00132,"pRank":47,"nSamples":50,"individualID.1":5,"individualID.2":28,"transmission":false,"snpDist":4,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":3081,"infectionDiff":2996,"infectionDiffY":8.20822,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"005_029","label":"SNPs","pAvg":0.00434,"pSD":0.00185,"pScaled":0.0107,"pRank":15,"nSamples":500,"individualID.1":5,"individualID.2":29,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1990-12-27 23:28:20","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1992-03-01 23:20:54","sampleDiff":1257,"infectionDiff":1521,"infectionDiffY":4.16712,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_030","label":"SNPs","pAvg":0.00911,"pSD":0.00233,"pScaled":0.00637,"pRank":18,"nSamples":50,"individualID.1":5,"individualID.2":30,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":1332,"infectionDiff":2002,"infectionDiffY":5.48493,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"005_031","label":"SNPs","pAvg":0.00467,"pSD":0.00209,"pScaled":0.00771,"pRank":17,"nSamples":500,"individualID.1":5,"individualID.2":31,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1991-01-03 16:49:07","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1991-07-17 03:37:35","sampleDiff":1029,"infectionDiff":1528,"infectionDiffY":4.1863,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"005_032","label":"SNPs","pAvg":0.01076,"pSD":0.00278,"pScaled":0.00734,"pRank":18,"nSamples":50,"individualID.1":5,"individualID.2":32,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":2762,"infectionDiff":1948,"infectionDiffY":5.33699,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"005_033","label":"SNPs","pAvg":0.00746,"pSD":0.00174,"pScaled":0.0034,"pRank":22,"nSamples":50,"individualID.1":5,"individualID.2":33,"transmission":false,"snpDist":7,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":3309,"infectionDiff":3853,"infectionDiffY":10.55616,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"005_034","label":"SNPs","pAvg":0.00157,"pSD":0.00076,"pScaled":0.00526,"pRank":17,"nSamples":500,"individualID.1":5,"individualID.2":34,"transmission":false,"snpDist":8,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":2331,"infectionDiff":1567,"infectionDiffY":4.29315,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"005_035","label":"SNPs","pAvg":0.00924,"pSD":0.00165,"pScaled":0.0024,"pRank":32,"nSamples":50,"individualID.1":5,"individualID.2":35,"transmission":false,"snpDist":4,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":3271,"infectionDiff":2650,"infectionDiffY":7.26027,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"005_036","label":"SNPs","pAvg":0.00548,"pSD":0.0012,"pScaled":0.00148,"pRank":55,"nSamples":50,"individualID.1":5,"individualID.2":36,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":3071,"infectionDiff":3461,"infectionDiffY":9.48219,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"005_037","label":"SNPs","pAvg":0.00818,"pSD":0.00214,"pScaled":0.00825,"pRank":30,"nSamples":500,"individualID.1":5,"individualID.2":37,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":3458,"infectionDiff":2983,"infectionDiffY":8.1726,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"005_038","label":"SNPs","pAvg":0.00885,"pSD":0.00232,"pScaled":0.01051,"pRank":21,"nSamples":500,"individualID.1":5,"individualID.2":38,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":2520,"infectionDiff":2628,"infectionDiffY":7.2,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"005_039","label":"SNPs","pAvg":0.00885,"pSD":0.00232,"pScaled":0.0191,"pRank":13,"nSamples":500,"individualID.1":5,"individualID.2":39,"transmission":false,"snpDist":10,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":2685,"infectionDiff":2073,"infectionDiffY":5.67945,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"005_040","label":"SNPs","pAvg":0.00451,"pSD":0.00102,"pScaled":0.00404,"pRank":52,"nSamples":500,"individualID.1":5,"individualID.2":40,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":3093,"infectionDiff":3717,"infectionDiffY":10.18356,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_041","label":"SNPs","pAvg":0.00769,"pSD":0.00215,"pScaled":0.01996,"pRank":16,"nSamples":500,"individualID.1":5,"individualID.2":41,"transmission":false,"snpDist":8,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":3943,"infectionDiff":1917,"infectionDiffY":5.25205,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"005_042","label":"SNPs","pAvg":0.00437,"pSD":0.00171,"pScaled":0.00161,"pRank":19,"nSamples":50,"individualID.1":5,"individualID.2":42,"transmission":false,"snpDist":4,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":1346,"infectionDiff":1569,"infectionDiffY":4.29863,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_043","label":"SNPs","pAvg":0.00935,"pSD":0.0022,"pScaled":0.01262,"pRank":21,"nSamples":500,"individualID.1":5,"individualID.2":43,"transmission":false,"snpDist":8,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":4068,"infectionDiff":2336,"infectionDiffY":6.4,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"005_044","label":"SNPs","pAvg":0.00487,"pSD":0.001,"pScaled":0.00131,"pRank":26,"nSamples":50,"individualID.1":5,"individualID.2":44,"transmission":false,"snpDist":5,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":1688,"infectionDiff":2237,"infectionDiffY":6.12877,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"005_045","label":"SNPs","pAvg":0.01616,"pSD":0.0037,"pScaled":0.00978,"pRank":19,"nSamples":50,"individualID.1":5,"individualID.2":45,"transmission":false,"snpDist":8,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":3467,"infectionDiff":3228,"infectionDiffY":8.84384,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"005_046","label":"SNPs","pAvg":0.00821,"pSD":0.00175,"pScaled":0.00475,"pRank":24,"nSamples":50,"individualID.1":5,"individualID.2":46,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":2371,"infectionDiff":2182,"infectionDiffY":5.97808,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"005_047","label":"SNPs","pAvg":0.01128,"pSD":0.00262,"pScaled":0.00243,"pRank":32,"nSamples":50,"individualID.1":5,"individualID.2":47,"transmission":false,"snpDist":6,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":2318,"infectionDiff":2913,"infectionDiffY":7.98082,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"005_048","label":"SNPs","pAvg":0.01819,"pSD":0.00411,"pScaled":0.00802,"pRank":14,"nSamples":50,"individualID.1":5,"individualID.2":48,"transmission":false,"snpDist":7,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":2600,"infectionDiff":2447,"infectionDiffY":6.70411,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"005_049","label":"SNPs","pAvg":0.00447,"pSD":0.00101,"pScaled":0.00293,"pRank":23,"nSamples":50,"individualID.1":5,"individualID.2":49,"transmission":false,"snpDist":7,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":2336,"infectionDiff":2066,"infectionDiffY":5.66027,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_050","label":"SNPs","pAvg":0.0018,"pSD":0.00082,"pScaled":0.00784,"pRank":16,"nSamples":500,"individualID.1":5,"individualID.2":50,"transmission":false,"snpDist":5,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":2190,"infectionDiff":1738,"infectionDiffY":4.76164,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"005_051","label":"SNPs","pAvg":0.0095,"pSD":0.00237,"pScaled":0.0045,"pRank":36,"nSamples":50,"individualID.1":5,"individualID.2":51,"transmission":false,"snpDist":5,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":2104,"infectionDiff":2705,"infectionDiffY":7.41096,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"005_052","label":"SNPs","pAvg":0.00913,"pSD":0.00258,"pScaled":0.00342,"pRank":35,"nSamples":50,"individualID.1":5,"individualID.2":52,"transmission":false,"snpDist":6,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":3937,"infectionDiff":3733,"infectionDiffY":10.2274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"005_053","label":"SNPs","pAvg":0.008,"pSD":0.00218,"pScaled":0.00534,"pRank":24,"nSamples":50,"individualID.1":5,"individualID.2":53,"transmission":false,"snpDist":8,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":2625,"infectionDiff":3197,"infectionDiffY":8.7589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"005_054","label":"SNPs","pAvg":0.00787,"pSD":0.00214,"pScaled":0.00205,"pRank":23,"nSamples":50,"individualID.1":5,"individualID.2":54,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":3796,"infectionDiff":4121,"infectionDiffY":11.29041,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"005_055","label":"SNPs","pAvg":0.00898,"pSD":0.00182,"pScaled":0.00276,"pRank":23,"nSamples":50,"individualID.1":5,"individualID.2":55,"transmission":false,"snpDist":8,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":2779,"infectionDiff":3389,"infectionDiffY":9.28493,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"005_056","label":"SNPs","pAvg":0.00922,"pSD":0.00237,"pScaled":0.0022,"pRank":24,"nSamples":50,"individualID.1":5,"individualID.2":56,"transmission":false,"snpDist":8,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":3203,"infectionDiff":3474,"infectionDiffY":9.51781,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"005_057","label":"SNPs","pAvg":0.00912,"pSD":0.0023,"pScaled":0.00182,"pRank":27,"nSamples":50,"individualID.1":5,"individualID.2":57,"transmission":false,"snpDist":9,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":3766,"infectionDiff":4124,"infectionDiffY":11.29863,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"005_058","label":"SNPs","pAvg":0.00885,"pSD":0.00232,"pScaled":0.00873,"pRank":32,"nSamples":500,"individualID.1":5,"individualID.2":58,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":4051,"infectionDiff":3812,"infectionDiffY":10.44384,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"005_059","label":"SNPs","pAvg":0.01086,"pSD":0.00276,"pScaled":0.01561,"pRank":19,"nSamples":500,"individualID.1":5,"individualID.2":59,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":3431,"infectionDiff":2276,"infectionDiffY":6.23562,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"005_060","label":"SNPs","pAvg":0.00473,"pSD":0.00117,"pScaled":0.00229,"pRank":55,"nSamples":50,"individualID.1":5,"individualID.2":60,"transmission":false,"snpDist":8,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":4092,"infectionDiff":4454,"infectionDiffY":12.20274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_061","label":"SNPs","pAvg":0.00524,"pSD":0.00131,"pScaled":0.00994,"pRank":18,"nSamples":500,"individualID.1":5,"individualID.2":61,"transmission":false,"snpDist":7,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":3885,"infectionDiff":3672,"infectionDiffY":10.06027,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_062","label":"SNPs","pAvg":0.01114,"pSD":0.00275,"pScaled":0.00295,"pRank":27,"nSamples":50,"individualID.1":5,"individualID.2":62,"transmission":false,"snpDist":6,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":2620,"infectionDiff":2576,"infectionDiffY":7.05753,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"005_063","label":"SNPs","pAvg":0.0019,"pSD":0.00055,"pScaled":0.00091,"pRank":30,"nSamples":50,"individualID.1":5,"individualID.2":63,"transmission":false,"snpDist":7,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":2052,"infectionDiff":2371,"infectionDiffY":6.49589,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"005_064","label":"SNPs","pAvg":0.00846,"pSD":0.00218,"pScaled":0.00321,"pRank":16,"nSamples":50,"individualID.1":5,"individualID.2":64,"transmission":false,"snpDist":9,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":2835,"infectionDiff":3353,"infectionDiffY":9.1863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"005_065","label":"SNPs","pAvg":0.00524,"pSD":0.00106,"pScaled":0.00404,"pRank":23,"nSamples":50,"individualID.1":5,"individualID.2":65,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":2843,"infectionDiff":3286,"infectionDiffY":9.00274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_066","label":"SNPs","pAvg":0.00486,"pSD":0.00125,"pScaled":0.00128,"pRank":34,"nSamples":50,"individualID.1":5,"individualID.2":66,"transmission":false,"snpDist":9,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":2990,"infectionDiff":3433,"infectionDiffY":9.40548,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"005_067","label":"SNPs","pAvg":0.00889,"pSD":0.00216,"pScaled":0.00224,"pRank":46,"nSamples":50,"individualID.1":5,"individualID.2":67,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":4111,"infectionDiff":4518,"infectionDiffY":12.37808,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"005_068","label":"SNPs","pAvg":0.00531,"pSD":0.00141,"pScaled":0.00116,"pRank":66,"nSamples":50,"individualID.1":5,"individualID.2":68,"transmission":false,"snpDist":5,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":3718,"infectionDiff":4170,"infectionDiffY":11.42466,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"005_069","label":"SNPs","pAvg":0.00443,"pSD":0.00108,"pScaled":0.00142,"pRank":39,"nSamples":50,"individualID.1":5,"individualID.2":69,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":3762,"infectionDiff":4197,"infectionDiffY":11.49863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_070","label":"SNPs","pAvg":0.00538,"pSD":0.00136,"pScaled":0.00167,"pRank":34,"nSamples":50,"individualID.1":5,"individualID.2":70,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":2299,"infectionDiff":2614,"infectionDiffY":7.16164,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_071","label":"SNPs","pAvg":0.00524,"pSD":0.00131,"pScaled":0.00533,"pRank":28,"nSamples":500,"individualID.1":5,"individualID.2":71,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":3817,"infectionDiff":2873,"infectionDiffY":7.87123,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_072","label":"SNPs","pAvg":0.00317,"pSD":0.00095,"pScaled":0.00097,"pRank":33,"nSamples":50,"individualID.1":5,"individualID.2":72,"transmission":false,"snpDist":7,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":2258,"infectionDiff":2792,"infectionDiffY":7.64932,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"005_073","label":"SNPs","pAvg":0.0017,"pSD":0.00052,"pScaled":0.00125,"pRank":41,"nSamples":50,"individualID.1":5,"individualID.2":73,"transmission":false,"snpDist":7,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":3339,"infectionDiff":3543,"infectionDiffY":9.70685,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"005_074","label":"SNPs","pAvg":0.00175,"pSD":0.00051,"pScaled":0.00096,"pRank":28,"nSamples":50,"individualID.1":5,"individualID.2":74,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":3180,"infectionDiff":2923,"infectionDiffY":8.00822,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"005_075","label":"SNPs","pAvg":0.00017,"pSD":0.00052,"pScaled":0.00072,"pRank":81,"nSamples":500,"individualID.1":5,"individualID.2":75,"transmission":false,"snpDist":12,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":3846,"infectionDiff":4496,"infectionDiffY":12.31781,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"005_076","label":"SNPs","pAvg":0.01456,"pSD":0.00343,"pScaled":0.00357,"pRank":28,"nSamples":50,"individualID.1":5,"individualID.2":76,"transmission":false,"snpDist":5,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":4081,"infectionDiff":4170,"infectionDiffY":11.42466,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"005_077","label":"SNPs","pAvg":0.0084,"pSD":0.00234,"pScaled":0.00186,"pRank":34,"nSamples":50,"individualID.1":5,"individualID.2":77,"transmission":false,"snpDist":4,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":3233,"infectionDiff":3885,"infectionDiffY":10.64384,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"005_078","label":"SNPs","pAvg":0.00431,"pSD":0.00098,"pScaled":0.00096,"pRank":76,"nSamples":50,"individualID.1":5,"individualID.2":78,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":3924,"infectionDiff":4198,"infectionDiffY":11.50137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_079","label":"SNPs","pAvg":0.00189,"pSD":0.00051,"pScaled":0.00095,"pRank":38,"nSamples":50,"individualID.1":5,"individualID.2":79,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":3333,"infectionDiff":3482,"infectionDiffY":9.53973,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"005_080","label":"SNPs","pAvg":0.002,"pSD":0.00056,"pScaled":0.01458,"pRank":15,"nSamples":500,"individualID.1":5,"individualID.2":80,"transmission":false,"snpDist":9,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":3342,"infectionDiff":3414,"infectionDiffY":9.35342,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"005_081","label":"SNPs","pAvg":0.00163,"pSD":0.00054,"pScaled":0.0004,"pRank":86,"nSamples":50,"individualID.1":5,"individualID.2":81,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":4057,"infectionDiff":4581,"infectionDiffY":12.55068,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"005_082","label":"SNPs","pAvg":0.0052,"pSD":0.00131,"pScaled":0.00113,"pRank":60,"nSamples":50,"individualID.1":5,"individualID.2":82,"transmission":false,"snpDist":6,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":4062,"infectionDiff":4658,"infectionDiffY":12.76164,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_083","label":"SNPs","pAvg":0.00543,"pSD":0.00131,"pScaled":0.00211,"pRank":57,"nSamples":50,"individualID.1":5,"individualID.2":83,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":3837,"infectionDiff":4128,"infectionDiffY":11.30959,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"005_084","label":"SNPs","pAvg":0.0002,"pSD":0.00061,"pScaled":0.0001,"pRank":72,"nSamples":500,"individualID.1":5,"individualID.2":84,"transmission":false,"snpDist":11,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":4080,"infectionDiff":4176,"infectionDiffY":11.4411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"005_085","label":"SNPs","pAvg":0.00159,"pSD":0.00049,"pScaled":0.00054,"pRank":32,"nSamples":50,"individualID.1":5,"individualID.2":85,"transmission":false,"snpDist":9,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":3192,"infectionDiff":3841,"infectionDiffY":10.52329,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"005_086","label":"SNPs","pAvg":0.00461,"pSD":0.00101,"pScaled":0.00147,"pRank":24,"nSamples":50,"individualID.1":5,"individualID.2":86,"transmission":false,"snpDist":6,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":3030,"infectionDiff":3469,"infectionDiffY":9.50411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_087","label":"SNPs","pAvg":0.00599,"pSD":0.00152,"pScaled":0.00488,"pRank":11,"nSamples":50,"individualID.1":5,"individualID.2":87,"transmission":false,"snpDist":10,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":3565,"infectionDiff":4008,"infectionDiffY":10.98082,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"005_088","label":"SNPs","pAvg":0.00446,"pSD":0.00093,"pScaled":0.00086,"pRank":67,"nSamples":50,"individualID.1":5,"individualID.2":88,"transmission":false,"snpDist":5,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":3675,"infectionDiff":4343,"infectionDiffY":11.89863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_089","label":"SNPs","pAvg":0.00175,"pSD":0.00051,"pScaled":0.00056,"pRank":33,"nSamples":50,"individualID.1":5,"individualID.2":89,"transmission":false,"snpDist":10,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":3966,"infectionDiff":4179,"infectionDiffY":11.44932,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"005_090","label":"SNPs","pAvg":0.00172,"pSD":0.00045,"pScaled":0.00045,"pRank":50,"nSamples":50,"individualID.1":5,"individualID.2":90,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":4037,"infectionDiff":4406,"infectionDiffY":12.07123,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"005_091","label":"SNPs","pAvg":0.00449,"pSD":0.00098,"pScaled":0.00225,"pRank":23,"nSamples":50,"individualID.1":5,"individualID.2":91,"transmission":false,"snpDist":10,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":4058,"infectionDiff":3997,"infectionDiffY":10.95068,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_092","label":"SNPs","pAvg":0.00191,"pSD":0.00057,"pScaled":0.00077,"pRank":24,"nSamples":50,"individualID.1":5,"individualID.2":92,"transmission":false,"snpDist":10,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":4105,"infectionDiff":4148,"infectionDiffY":11.36438,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"005_093","label":"SNPs","pAvg":0.00018,"pSD":0.00058,"pScaled":0.00005,"pRank":87,"nSamples":500,"individualID.1":5,"individualID.2":93,"transmission":false,"snpDist":11,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":3942,"infectionDiff":4374,"infectionDiffY":11.98356,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"005_094","label":"SNPs","pAvg":0.00539,"pSD":0.00136,"pScaled":0.00178,"pRank":37,"nSamples":50,"individualID.1":5,"individualID.2":94,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":3988,"infectionDiff":4645,"infectionDiffY":12.72603,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_095","label":"SNPs","pAvg":0.00609,"pSD":0.00155,"pScaled":0.0031,"pRank":12,"nSamples":50,"individualID.1":5,"individualID.2":95,"transmission":false,"snpDist":10,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":3571,"infectionDiff":4077,"infectionDiffY":11.16986,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"005_096","label":"SNPs","pAvg":0.00531,"pSD":0.00136,"pScaled":0.00186,"pRank":24,"nSamples":50,"individualID.1":5,"individualID.2":96,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":3665,"infectionDiff":4309,"infectionDiffY":11.80548,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_097","label":"SNPs","pAvg":0.00476,"pSD":0.00107,"pScaled":0.00107,"pRank":49,"nSamples":50,"individualID.1":5,"individualID.2":97,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":3908,"infectionDiff":4465,"infectionDiffY":12.23288,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_098","label":"SNPs","pAvg":0.00164,"pSD":0.00046,"pScaled":0.00046,"pRank":41,"nSamples":50,"individualID.1":5,"individualID.2":98,"transmission":false,"snpDist":10,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":3727,"infectionDiff":4238,"infectionDiffY":11.61096,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"005_099","label":"SNPs","pAvg":0.0053,"pSD":0.00135,"pScaled":0.00181,"pRank":30,"nSamples":50,"individualID.1":5,"individualID.2":99,"transmission":false,"snpDist":7,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":3710,"infectionDiff":4102,"infectionDiffY":11.23836,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"005_100","label":"SNPs","pAvg":0.01816,"pSD":0.00414,"pScaled":0.00535,"pRank":25,"nSamples":50,"individualID.1":5,"individualID.2":100,"transmission":false,"infectionDate.1":"1986-10-28 21:54:09","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1988-09-21 13:32:09","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":3909,"infectionDiff":4480,"infectionDiffY":12.27397,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"006_009","label":"SNPs","pAvg":0.03999,"pSD":0.00979,"pScaled":0.17824,"pRank":1,"nSamples":500,"individualID.1":6,"individualID.2":9,"transmission":true,"snpDist":6,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":2523,"infectionDiff":683,"infectionDiffY":1.87123,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"006_014","label":"SNPs","pAvg":0.04985,"pSD":0.00956,"pScaled":0.02738,"pRank":5,"nSamples":50,"individualID.1":6,"individualID.2":14,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":554,"infectionDiff":261,"infectionDiffY":0.71507,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"006_017","label":"SNPs","pAvg":0.05449,"pSD":0.01283,"pScaled":0.07596,"pRank":5,"nSamples":500,"individualID.1":6,"individualID.2":17,"transmission":false,"snpDist":8,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":1692,"infectionDiff":32,"infectionDiffY":0.08767,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"006_018","label":"SNPs","pAvg":0.02416,"pSD":0.00647,"pScaled":0.02738,"pRank":16,"nSamples":500,"individualID.1":6,"individualID.2":18,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":447,"infectionDiff":457,"infectionDiffY":1.25205,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"006_021","label":"SNPs","pAvg":0.03975,"pSD":0.00869,"pScaled":0.03794,"pRank":12,"nSamples":500,"individualID.1":6,"individualID.2":21,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":1892,"infectionDiff":454,"infectionDiffY":1.24384,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"006_023","label":"SNPs","pAvg":0.01097,"pSD":0.00261,"pScaled":0.00488,"pRank":32,"nSamples":50,"individualID.1":6,"individualID.2":23,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":2681,"infectionDiff":2222,"infectionDiffY":6.08767,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"006_026","label":"SNPs","pAvg":0.01302,"pSD":0.00532,"pScaled":0.00457,"pRank":20,"nSamples":50,"individualID.1":6,"individualID.2":26,"transmission":false,"snpDist":7,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":2285,"infectionDiff":1519,"infectionDiffY":4.16164,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"006_027","label":"SNPs","pAvg":0.00891,"pSD":0.00193,"pScaled":0.00318,"pRank":42,"nSamples":50,"individualID.1":6,"individualID.2":27,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":2457,"infectionDiff":2108,"infectionDiffY":5.77534,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"006_028","label":"SNPs","pAvg":0.03826,"pSD":0.01152,"pScaled":0.01069,"pRank":19,"nSamples":50,"individualID.1":6,"individualID.2":28,"transmission":false,"snpDist":6,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":1674,"infectionDiff":933,"infectionDiffY":2.55616,"timeCat":"3","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"006_033","label":"SNPs","pAvg":0.00725,"pSD":0.0034,"pScaled":0.00331,"pRank":27,"nSamples":50,"individualID.1":6,"individualID.2":33,"transmission":false,"snpDist":9,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":1902,"infectionDiff":1790,"infectionDiffY":4.90411,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"006_035","label":"SNPs","pAvg":0.02439,"pSD":0.00657,"pScaled":0.00634,"pRank":20,"nSamples":50,"individualID.1":6,"individualID.2":35,"transmission":false,"snpDist":6,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":1864,"infectionDiff":587,"infectionDiffY":1.60822,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"006_036","label":"SNPs","pAvg":0.0201,"pSD":0.00649,"pScaled":0.00544,"pRank":31,"nSamples":50,"individualID.1":6,"individualID.2":36,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":1663,"infectionDiff":1398,"infectionDiffY":3.83014,"timeCat":"4","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"006_037","label":"SNPs","pAvg":0.05882,"pSD":0.01537,"pScaled":0.05931,"pRank":3,"nSamples":500,"individualID.1":6,"individualID.2":37,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":2050,"infectionDiff":920,"infectionDiffY":2.52055,"timeCat":"3","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"006_038","label":"SNPs","pAvg":0.06538,"pSD":0.0147,"pScaled":0.07762,"pRank":3,"nSamples":500,"individualID.1":6,"individualID.2":38,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":1112,"infectionDiff":565,"infectionDiffY":1.54795,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"006_039","label":"SNPs","pAvg":0.00816,"pSD":0.02488,"pScaled":0.0176,"pRank":14,"nSamples":500,"individualID.1":6,"individualID.2":39,"transmission":false,"snpDist":12,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":1277,"infectionDiff":11,"infectionDiffY":0.03014,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"006_040","label":"SNPs","pAvg":0.00974,"pSD":0.00398,"pScaled":0.00871,"pRank":31,"nSamples":500,"individualID.1":6,"individualID.2":40,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":1686,"infectionDiff":1654,"infectionDiffY":4.53151,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"006_043","label":"SNPs","pAvg":0.03308,"pSD":0.00772,"pScaled":0.04464,"pRank":9,"nSamples":500,"individualID.1":6,"individualID.2":43,"transmission":false,"snpDist":10,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":2660,"infectionDiff":273,"infectionDiffY":0.74795,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"006_044","label":"SNPs","pAvg":0.03215,"pSD":0.00811,"pScaled":0.00865,"pRank":12,"nSamples":50,"individualID.1":6,"individualID.2":44,"transmission":false,"snpDist":7,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":281,"infectionDiff":174,"infectionDiffY":0.47671,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"006_045","label":"SNPs","pAvg":0.02158,"pSD":0.00548,"pScaled":0.01306,"pRank":14,"nSamples":50,"individualID.1":6,"individualID.2":45,"transmission":false,"snpDist":10,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":2059,"infectionDiff":1165,"infectionDiffY":3.19178,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"006_046","label":"SNPs","pAvg":0.09646,"pSD":0.02082,"pScaled":0.0558,"pRank":2,"nSamples":50,"individualID.1":6,"individualID.2":46,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":964,"infectionDiff":119,"infectionDiffY":0.32603,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"006_047","label":"SNPs","pAvg":0.01604,"pSD":0.00436,"pScaled":0.00346,"pRank":29,"nSamples":50,"individualID.1":6,"individualID.2":47,"transmission":false,"snpDist":8,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":910,"infectionDiff":851,"infectionDiffY":2.33151,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"006_048","label":"SNPs","pAvg":0.0364,"pSD":0.00668,"pScaled":0.01605,"pRank":8,"nSamples":50,"individualID.1":6,"individualID.2":48,"transmission":false,"snpDist":9,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":1193,"infectionDiff":385,"infectionDiffY":1.05479,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"006_049","label":"SNPs","pAvg":0.05471,"pSD":0.01136,"pScaled":0.03583,"pRank":5,"nSamples":50,"individualID.1":6,"individualID.2":49,"transmission":false,"snpDist":9,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":928,"infectionDiff":3,"infectionDiffY":0.00822,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"006_051","label":"SNPs","pAvg":0.02591,"pSD":0.00711,"pScaled":0.01227,"pRank":17,"nSamples":50,"individualID.1":6,"individualID.2":51,"transmission":false,"snpDist":7,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":697,"infectionDiff":642,"infectionDiffY":1.7589,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"006_052","label":"SNPs","pAvg":0.01493,"pSD":0.00701,"pScaled":0.0056,"pRank":23,"nSamples":50,"individualID.1":6,"individualID.2":52,"transmission":false,"snpDist":8,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":2530,"infectionDiff":1670,"infectionDiffY":4.57534,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"006_053","label":"SNPs","pAvg":0.03568,"pSD":0.00904,"pScaled":0.02383,"pRank":5,"nSamples":50,"individualID.1":6,"individualID.2":53,"transmission":false,"snpDist":10,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":1217,"infectionDiff":1134,"infectionDiffY":3.10685,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"006_054","label":"SNPs","pAvg":0.00907,"pSD":0.00239,"pScaled":0.00236,"pRank":21,"nSamples":50,"individualID.1":6,"individualID.2":54,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":2388,"infectionDiff":2059,"infectionDiffY":5.6411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"006_055","label":"SNPs","pAvg":0.01137,"pSD":0.00375,"pScaled":0.00349,"pRank":17,"nSamples":50,"individualID.1":6,"individualID.2":55,"transmission":false,"snpDist":10,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":1371,"infectionDiff":1326,"infectionDiffY":3.63288,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"006_056","label":"SNPs","pAvg":0.03143,"pSD":0.00795,"pScaled":0.00751,"pRank":12,"nSamples":50,"individualID.1":6,"individualID.2":56,"transmission":false,"snpDist":10,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":1795,"infectionDiff":1411,"infectionDiffY":3.86575,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"006_057","label":"SNPs","pAvg":0.00154,"pSD":0.00474,"pScaled":0.00031,"pRank":54,"nSamples":500,"individualID.1":6,"individualID.2":57,"transmission":false,"snpDist":11,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":2358,"infectionDiff":2061,"infectionDiffY":5.64658,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"006_058","label":"SNPs","pAvg":0.01423,"pSD":0.00627,"pScaled":0.01404,"pRank":23,"nSamples":500,"individualID.1":6,"individualID.2":58,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":2643,"infectionDiff":1749,"infectionDiffY":4.79178,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"006_059","label":"SNPs","pAvg":0.02873,"pSD":0.00666,"pScaled":0.0413,"pRank":9,"nSamples":500,"individualID.1":6,"individualID.2":59,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":2023,"infectionDiff":213,"infectionDiffY":0.58356,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"006_060","label":"SNPs","pAvg":0.01019,"pSD":0.00203,"pScaled":0.00494,"pRank":29,"nSamples":50,"individualID.1":6,"individualID.2":60,"transmission":false,"snpDist":10,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":2685,"infectionDiff":2391,"infectionDiffY":6.55068,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"006_061","label":"SNPs","pAvg":0.00434,"pSD":0.00185,"pScaled":0.00823,"pRank":27,"nSamples":500,"individualID.1":6,"individualID.2":61,"transmission":false,"snpDist":9,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":2478,"infectionDiff":1609,"infectionDiffY":4.40822,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"006_062","label":"SNPs","pAvg":0.02146,"pSD":0.00436,"pScaled":0.00568,"pRank":19,"nSamples":50,"individualID.1":6,"individualID.2":62,"transmission":false,"snpDist":8,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":1213,"infectionDiff":514,"infectionDiffY":1.40822,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"006_063","label":"SNPs","pAvg":0.01796,"pSD":0.00358,"pScaled":0.00864,"pRank":12,"nSamples":50,"individualID.1":6,"individualID.2":63,"transmission":false,"snpDist":9,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":644,"infectionDiff":308,"infectionDiffY":0.84384,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"006_064","label":"SNPs","pAvg":0.00206,"pSD":0.00641,"pScaled":0.00078,"pRank":39,"nSamples":500,"individualID.1":6,"individualID.2":64,"transmission":false,"snpDist":11,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":1427,"infectionDiff":1290,"infectionDiffY":3.53425,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"006_065","label":"SNPs","pAvg":0.01764,"pSD":0.00535,"pScaled":0.01361,"pRank":6,"nSamples":50,"individualID.1":6,"individualID.2":65,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":1435,"infectionDiff":1223,"infectionDiffY":3.35068,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"006_066","label":"SNPs","pAvg":0.00224,"pSD":0.00701,"pScaled":0.00059,"pRank":48,"nSamples":500,"individualID.1":6,"individualID.2":66,"transmission":false,"snpDist":11,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":1582,"infectionDiff":1370,"infectionDiffY":3.75342,"timeCat":"4","Z1":"1","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"006_067","label":"SNPs","pAvg":0.01472,"pSD":0.00305,"pScaled":0.00371,"pRank":34,"nSamples":50,"individualID.1":6,"individualID.2":67,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":2704,"infectionDiff":2455,"infectionDiffY":6.72603,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"006_068","label":"SNPs","pAvg":0.00453,"pSD":0.00108,"pScaled":0.00099,"pRank":70,"nSamples":50,"individualID.1":6,"individualID.2":68,"transmission":false,"snpDist":7,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":2310,"infectionDiff":2107,"infectionDiffY":5.7726,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"006_069","label":"SNPs","pAvg":0.00514,"pSD":0.0013,"pScaled":0.00165,"pRank":29,"nSamples":50,"individualID.1":6,"individualID.2":69,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":2355,"infectionDiff":2134,"infectionDiffY":5.84658,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"006_070","label":"SNPs","pAvg":0.04023,"pSD":0.00861,"pScaled":0.01246,"pRank":14,"nSamples":50,"individualID.1":6,"individualID.2":70,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":891,"infectionDiff":552,"infectionDiffY":1.51233,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"006_071","label":"SNPs","pAvg":0.02929,"pSD":0.00841,"pScaled":0.02981,"pRank":16,"nSamples":500,"individualID.1":6,"individualID.2":71,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":2410,"infectionDiff":810,"infectionDiffY":2.21918,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"006_072","label":"SNPs","pAvg":0.00854,"pSD":0.00245,"pScaled":0.0026,"pRank":24,"nSamples":50,"individualID.1":6,"individualID.2":72,"transmission":false,"snpDist":9,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":851,"infectionDiff":729,"infectionDiffY":1.99726,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"006_073","label":"SNPs","pAvg":0.00394,"pSD":0.00184,"pScaled":0.0029,"pRank":23,"nSamples":50,"individualID.1":6,"individualID.2":73,"transmission":false,"snpDist":9,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":1932,"infectionDiff":1480,"infectionDiffY":4.05479,"timeCat":"5","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"006_074","label":"SNPs","pAvg":0.00521,"pSD":0.00201,"pScaled":0.00286,"pRank":16,"nSamples":50,"individualID.1":6,"individualID.2":74,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":1772,"infectionDiff":860,"infectionDiffY":2.35616,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"006_075","label":"SNPs","pAvg":0.00036,"pSD":0.00113,"pScaled":0.00157,"pRank":54,"nSamples":500,"individualID.1":6,"individualID.2":75,"transmission":false,"snpDist":14,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":2438,"infectionDiff":2434,"infectionDiffY":6.66849,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"006_076","label":"SNPs","pAvg":0.00846,"pSD":0.00221,"pScaled":0.00207,"pRank":40,"nSamples":50,"individualID.1":6,"individualID.2":76,"transmission":false,"snpDist":7,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":2673,"infectionDiff":2107,"infectionDiffY":5.7726,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"006_077","label":"SNPs","pAvg":0.00736,"pSD":0.00352,"pScaled":0.00163,"pRank":38,"nSamples":50,"individualID.1":6,"individualID.2":77,"transmission":false,"snpDist":6,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":1826,"infectionDiff":1822,"infectionDiffY":4.99178,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"006_078","label":"SNPs","pAvg":0.01009,"pSD":0.0022,"pScaled":0.00223,"pRank":42,"nSamples":50,"individualID.1":6,"individualID.2":78,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":2517,"infectionDiff":2135,"infectionDiffY":5.84932,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"006_079","label":"SNPs","pAvg":0.00328,"pSD":0.00121,"pScaled":0.00165,"pRank":33,"nSamples":50,"individualID.1":6,"individualID.2":79,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":1925,"infectionDiff":1419,"infectionDiffY":3.88767,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"006_080","label":"SNPs","pAvg":0.00037,"pSD":0.00117,"pScaled":0.00271,"pRank":48,"nSamples":500,"individualID.1":6,"individualID.2":80,"transmission":false,"snpDist":11,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":1934,"infectionDiff":1351,"infectionDiffY":3.70137,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"006_081","label":"SNPs","pAvg":0.00381,"pSD":0.00134,"pScaled":0.00095,"pRank":50,"nSamples":50,"individualID.1":6,"individualID.2":81,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":2650,"infectionDiff":2518,"infectionDiffY":6.89863,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"006_082","label":"SNPs","pAvg":0.00448,"pSD":0.00115,"pScaled":0.00098,"pRank":69,"nSamples":50,"individualID.1":6,"individualID.2":82,"transmission":false,"snpDist":8,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":2654,"infectionDiff":2595,"infectionDiffY":7.10959,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"006_083","label":"SNPs","pAvg":0.00468,"pSD":0.00103,"pScaled":0.00182,"pRank":63,"nSamples":50,"individualID.1":6,"individualID.2":83,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":2430,"infectionDiff":2065,"infectionDiffY":5.65753,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"006_084","label":"SNPs","pAvg":0.00017,"pSD":0.00053,"pScaled":0.00009,"pRank":76,"nSamples":500,"individualID.1":6,"individualID.2":84,"transmission":false,"snpDist":13,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":2673,"infectionDiff":2113,"infectionDiffY":5.78904,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"006_085","label":"SNPs","pAvg":0.00017,"pSD":0.00057,"pScaled":0.00006,"pRank":64,"nSamples":500,"individualID.1":6,"individualID.2":85,"transmission":false,"snpDist":11,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":1785,"infectionDiff":1778,"infectionDiffY":4.87123,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"006_086","label":"SNPs","pAvg":0.01182,"pSD":0.00338,"pScaled":0.00376,"pRank":11,"nSamples":50,"individualID.1":6,"individualID.2":86,"transmission":false,"snpDist":8,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":1623,"infectionDiff":1406,"infectionDiffY":3.85205,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"006_087","label":"SNPs","pAvg":0.00054,"pSD":0.00166,"pScaled":0.00044,"pRank":51,"nSamples":500,"individualID.1":6,"individualID.2":87,"transmission":false,"snpDist":12,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":2158,"infectionDiff":1945,"infectionDiffY":5.32877,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"006_088","label":"SNPs","pAvg":0.00516,"pSD":0.00127,"pScaled":0.001,"pRank":60,"nSamples":50,"individualID.1":6,"individualID.2":88,"transmission":false,"snpDist":7,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":2267,"infectionDiff":2280,"infectionDiffY":6.24658,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"006_089","label":"SNPs","pAvg":0.0002,"pSD":0.00064,"pScaled":0.00007,"pRank":76,"nSamples":500,"individualID.1":6,"individualID.2":89,"transmission":false,"snpDist":12,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":2559,"infectionDiff":2116,"infectionDiffY":5.79726,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"006_090","label":"SNPs","pAvg":0.00194,"pSD":0.00048,"pScaled":0.0005,"pRank":47,"nSamples":50,"individualID.1":6,"individualID.2":90,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":2630,"infectionDiff":2343,"infectionDiffY":6.41918,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"006_091","label":"SNPs","pAvg":0.00053,"pSD":0.00162,"pScaled":0.00026,"pRank":64,"nSamples":500,"individualID.1":6,"individualID.2":91,"transmission":false,"snpDist":12,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":2651,"infectionDiff":1934,"infectionDiffY":5.29863,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"006_092","label":"SNPs","pAvg":0.00016,"pSD":0.00052,"pScaled":0.00007,"pRank":75,"nSamples":500,"individualID.1":6,"individualID.2":92,"transmission":false,"snpDist":12,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":2698,"infectionDiff":2085,"infectionDiffY":5.71233,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"006_093","label":"SNPs","pAvg":0.00021,"pSD":0.00067,"pScaled":0.00006,"pRank":83,"nSamples":500,"individualID.1":6,"individualID.2":93,"transmission":false,"snpDist":13,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":2535,"infectionDiff":2311,"infectionDiffY":6.33151,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"006_094","label":"SNPs","pAvg":0.00967,"pSD":0.00178,"pScaled":0.00319,"pRank":28,"nSamples":50,"individualID.1":6,"individualID.2":94,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":2581,"infectionDiff":2582,"infectionDiffY":7.07397,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"006_095","label":"SNPs","pAvg":0.00054,"pSD":0.00167,"pScaled":0.00027,"pRank":51,"nSamples":500,"individualID.1":6,"individualID.2":95,"transmission":false,"snpDist":12,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":2163,"infectionDiff":2014,"infectionDiffY":5.51781,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"006_096","label":"SNPs","pAvg":0.00478,"pSD":0.00101,"pScaled":0.00168,"pRank":29,"nSamples":50,"individualID.1":6,"individualID.2":96,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":2258,"infectionDiff":2246,"infectionDiffY":6.15342,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"006_097","label":"SNPs","pAvg":0.00544,"pSD":0.00134,"pScaled":0.00122,"pRank":44,"nSamples":50,"individualID.1":6,"individualID.2":97,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":2501,"infectionDiff":2402,"infectionDiffY":6.58082,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"006_098","label":"SNPs","pAvg":0.00039,"pSD":0.00122,"pScaled":0.00011,"pRank":77,"nSamples":500,"individualID.1":6,"individualID.2":98,"transmission":false,"snpDist":12,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":2320,"infectionDiff":2175,"infectionDiffY":5.9589,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"006_099","label":"SNPs","pAvg":0.0089,"pSD":0.00177,"pScaled":0.00304,"pRank":24,"nSamples":50,"individualID.1":6,"individualID.2":99,"transmission":false,"snpDist":9,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":2302,"infectionDiff":2039,"infectionDiffY":5.5863,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"006_100","label":"SNPs","pAvg":0.00816,"pSD":0.00231,"pScaled":0.00241,"pRank":48,"nSamples":50,"individualID.1":6,"individualID.2":100,"transmission":false,"infectionDate.1":"1992-06-21 16:58:15","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1992-07-30 01:18:18","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":2502,"infectionDiff":2417,"infectionDiffY":6.62192,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"007_003","label":"SNPs","pAvg":0.01197,"pSD":0.00382,"pScaled":0.03777,"pRank":11,"nSamples":500,"individualID.1":7,"individualID.2":3,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1990-12-11 19:24:08","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1998-10-30 22:42:57","sampleDiff":3902,"infectionDiff":1246,"infectionDiffY":3.4137,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"007_006","label":"SNPs","pAvg":0.00438,"pSD":0.0018,"pScaled":0.0028,"pRank":26,"nSamples":50,"individualID.1":7,"individualID.2":6,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":1619,"infectionDiff":1803,"infectionDiffY":4.93973,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_009","label":"SNPs","pAvg":0.0087,"pSD":0.00172,"pScaled":0.03877,"pRank":7,"nSamples":500,"individualID.1":7,"individualID.2":9,"transmission":false,"snpDist":9,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":4142,"infectionDiff":2486,"infectionDiffY":6.81096,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"007_010","label":"SNPs","pAvg":0.01632,"pSD":0.00716,"pScaled":0.01183,"pRank":16,"nSamples":50,"individualID.1":7,"individualID.2":10,"transmission":true,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":1593,"infectionDiff":1527,"infectionDiffY":4.18356,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"007_011","label":"SNPs","pAvg":0.75351,"pSD":0.41942,"pScaled":0.30113,"pRank":2,"nSamples":194,"individualID.1":7,"individualID.2":11,"transmission":true,"snpDist":2,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1988-04-18 02:31:21","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1991-10-25 12:28:14","sampleDiff":1340,"infectionDiff":278,"infectionDiffY":0.76164,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"007_012","label":"SNPs","pAvg":0.70958,"pSD":0.42826,"pScaled":0.17786,"pRank":1,"nSamples":158,"individualID.1":7,"individualID.2":12,"transmission":true,"snpDist":1,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1988-04-12 22:57:51","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1988-09-04 19:08:48","sampleDiff":194,"infectionDiff":273,"infectionDiffY":0.74795,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"007_014","label":"SNPs","pAvg":0.00813,"pSD":0.00233,"pScaled":0.00446,"pRank":24,"nSamples":50,"individualID.1":7,"individualID.2":14,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":2173,"infectionDiff":2064,"infectionDiffY":5.65479,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"007_015","label":"SNPs","pAvg":0.81274,"pSD":0.38179,"pScaled":0.31861,"pRank":1,"nSamples":257,"individualID.1":7,"individualID.2":15,"transmission":false,"snpDist":2,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1988-08-20 08:24:18","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1992-08-15 08:05:31","sampleDiff":1635,"infectionDiff":402,"infectionDiffY":1.10137,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"007_016","label":"SNPs","pAvg":0.03975,"pSD":0.00869,"pScaled":0.09907,"pRank":5,"nSamples":500,"individualID.1":7,"individualID.2":16,"transmission":false,"snpDist":4,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1989-04-18 04:17:39","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1995-12-16 04:24:53","sampleDiff":2853,"infectionDiff":643,"infectionDiffY":1.76164,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"007_017","label":"SNPs","pAvg":0.00942,"pSD":0.00232,"pScaled":0.01313,"pRank":17,"nSamples":500,"individualID.1":7,"individualID.2":17,"transmission":false,"snpDist":5,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":3311,"infectionDiff":1836,"infectionDiffY":5.03014,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"007_018","label":"SNPs","pAvg":0.01472,"pSD":0.00346,"pScaled":0.01669,"pRank":22,"nSamples":500,"individualID.1":7,"individualID.2":18,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":2066,"infectionDiff":2261,"infectionDiffY":6.19452,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"007_019","label":"SNPs","pAvg":0.04284,"pSD":0.00941,"pScaled":0.03892,"pRank":3,"nSamples":50,"individualID.1":7,"individualID.2":19,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1987-12-12 09:17:01","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1991-09-26 03:18:54","sampleDiff":1311,"infectionDiff":150,"infectionDiffY":0.41096,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"007_021","label":"SNPs","pAvg":0.00885,"pSD":0.00232,"pScaled":0.00845,"pRank":26,"nSamples":500,"individualID.1":7,"individualID.2":21,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":3510,"infectionDiff":2258,"infectionDiffY":6.1863,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"007_022","label":"SNPs","pAvg":0.03674,"pSD":0.00722,"pScaled":0.07168,"pRank":7,"nSamples":500,"individualID.1":7,"individualID.2":22,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1989-06-06 04:07:23","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1991-10-22 14:29:51","sampleDiff":1337,"infectionDiff":692,"infectionDiffY":1.89589,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"007_023","label":"SNPs","pAvg":0.00807,"pSD":0.00213,"pScaled":0.00359,"pRank":50,"nSamples":50,"individualID.1":7,"individualID.2":23,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":4299,"infectionDiff":4025,"infectionDiffY":11.0274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"007_024","label":"SNPs","pAvg":0.00803,"pSD":0.00301,"pScaled":0.00621,"pRank":14,"nSamples":50,"individualID.1":7,"individualID.2":24,"transmission":false,"snpDist":4,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1991-02-07 21:59:42","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1992-10-05 23:05:30","sampleDiff":1686,"infectionDiff":1304,"infectionDiffY":3.5726,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_025","label":"SNPs","pAvg":0.6669,"pSD":0.44862,"pScaled":0.15132,"pRank":2,"nSamples":140,"individualID.1":7,"individualID.2":25,"transmission":false,"snpDist":1,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1989-07-09 14:49:21","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1990-01-24 23:05:50","sampleDiff":701,"infectionDiff":725,"infectionDiffY":1.9863,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"1","snpClose":true} {"pairID":"007_026","label":"SNPs","pAvg":0.00511,"pSD":0.00119,"pScaled":0.0018,"pRank":43,"nSamples":50,"individualID.1":7,"individualID.2":26,"transmission":false,"snpDist":4,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":3903,"infectionDiff":3322,"infectionDiffY":9.10137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_027","label":"SNPs","pAvg":0.00938,"pSD":0.00263,"pScaled":0.00335,"pRank":40,"nSamples":50,"individualID.1":7,"individualID.2":27,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":4076,"infectionDiff":3912,"infectionDiffY":10.71781,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"007_028","label":"SNPs","pAvg":0.00792,"pSD":0.00199,"pScaled":0.00221,"pRank":43,"nSamples":50,"individualID.1":7,"individualID.2":28,"transmission":false,"snpDist":3,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":3292,"infectionDiff":2736,"infectionDiffY":7.49589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"007_029","label":"SNPs","pAvg":0.01636,"pSD":0.00537,"pScaled":0.04037,"pRank":11,"nSamples":500,"individualID.1":7,"individualID.2":29,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1990-12-27 23:28:20","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1992-03-01 23:20:54","sampleDiff":1468,"infectionDiff":1262,"infectionDiffY":3.45753,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"007_030","label":"SNPs","pAvg":0.00501,"pSD":0.00225,"pScaled":0.0035,"pRank":22,"nSamples":50,"individualID.1":7,"individualID.2":30,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":1543,"infectionDiff":1743,"infectionDiffY":4.77534,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_031","label":"SNPs","pAvg":0.01742,"pSD":0.00547,"pScaled":0.02874,"pRank":12,"nSamples":500,"individualID.1":7,"individualID.2":31,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1991-01-03 16:49:07","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1991-07-17 03:37:35","sampleDiff":1240,"infectionDiff":1268,"infectionDiffY":3.47397,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"007_032","label":"SNPs","pAvg":0.01763,"pSD":0.00785,"pScaled":0.01202,"pRank":13,"nSamples":50,"individualID.1":7,"individualID.2":32,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":2973,"infectionDiff":1689,"infectionDiffY":4.6274,"timeCat":"5","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"007_033","label":"SNPs","pAvg":0.0044,"pSD":0.0009,"pScaled":0.00201,"pRank":41,"nSamples":50,"individualID.1":7,"individualID.2":33,"transmission":false,"snpDist":6,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":3520,"infectionDiff":3593,"infectionDiffY":9.84384,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_034","label":"SNPs","pAvg":0.00975,"pSD":0.00324,"pScaled":0.03276,"pRank":9,"nSamples":500,"individualID.1":7,"individualID.2":34,"transmission":false,"snpDist":7,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":2542,"infectionDiff":1308,"infectionDiffY":3.58356,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_035","label":"SNPs","pAvg":0.01541,"pSD":0.00343,"pScaled":0.00401,"pRank":29,"nSamples":50,"individualID.1":7,"individualID.2":35,"transmission":false,"snpDist":3,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":3483,"infectionDiff":2391,"infectionDiffY":6.55068,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"007_036","label":"SNPs","pAvg":0.00893,"pSD":0.00204,"pScaled":0.00242,"pRank":48,"nSamples":50,"individualID.1":7,"individualID.2":36,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":3282,"infectionDiff":3201,"infectionDiffY":8.76986,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"007_037","label":"SNPs","pAvg":0.00483,"pSD":0.00114,"pScaled":0.00487,"pRank":36,"nSamples":500,"individualID.1":7,"individualID.2":37,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":3669,"infectionDiff":2724,"infectionDiffY":7.46301,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"007_038","label":"SNPs","pAvg":0.00524,"pSD":0.00131,"pScaled":0.00622,"pRank":26,"nSamples":500,"individualID.1":7,"individualID.2":38,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":2731,"infectionDiff":2368,"infectionDiffY":6.48767,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_039","label":"SNPs","pAvg":0.00501,"pSD":0.0021,"pScaled":0.01082,"pRank":19,"nSamples":500,"individualID.1":7,"individualID.2":39,"transmission":false,"snpDist":9,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":2896,"infectionDiff":1814,"infectionDiffY":4.96986,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_040","label":"SNPs","pAvg":0.00769,"pSD":0.00215,"pScaled":0.00688,"pRank":43,"nSamples":500,"individualID.1":7,"individualID.2":40,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":3304,"infectionDiff":3457,"infectionDiffY":9.47123,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"007_041","label":"SNPs","pAvg":0.00434,"pSD":0.00185,"pScaled":0.01126,"pRank":21,"nSamples":500,"individualID.1":7,"individualID.2":41,"transmission":false,"snpDist":7,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":4154,"infectionDiff":1658,"infectionDiffY":4.54247,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_042","label":"SNPs","pAvg":0.01663,"pSD":0.00602,"pScaled":0.00614,"pRank":14,"nSamples":50,"individualID.1":7,"individualID.2":42,"transmission":false,"snpDist":3,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":1557,"infectionDiff":1310,"infectionDiffY":3.58904,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"007_043","label":"SNPs","pAvg":0.01576,"pSD":0.00395,"pScaled":0.02127,"pRank":16,"nSamples":500,"individualID.1":7,"individualID.2":43,"transmission":false,"snpDist":7,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":4279,"infectionDiff":2077,"infectionDiffY":5.69041,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"007_044","label":"SNPs","pAvg":0.00817,"pSD":0.00204,"pScaled":0.0022,"pRank":20,"nSamples":50,"individualID.1":7,"individualID.2":44,"transmission":false,"snpDist":4,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":1899,"infectionDiff":1978,"infectionDiffY":5.41918,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"007_045","label":"SNPs","pAvg":0.00936,"pSD":0.00208,"pScaled":0.00567,"pRank":27,"nSamples":50,"individualID.1":7,"individualID.2":45,"transmission":false,"snpDist":7,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":3678,"infectionDiff":2968,"infectionDiffY":8.13151,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"007_046","label":"SNPs","pAvg":0.00493,"pSD":0.00095,"pScaled":0.00285,"pRank":29,"nSamples":50,"individualID.1":7,"individualID.2":46,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":2582,"infectionDiff":1923,"infectionDiffY":5.26849,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"007_047","label":"SNPs","pAvg":0.01918,"pSD":0.00435,"pScaled":0.00414,"pRank":22,"nSamples":50,"individualID.1":7,"individualID.2":47,"transmission":false,"snpDist":5,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":2529,"infectionDiff":2654,"infectionDiffY":7.27123,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"007_048","label":"SNPs","pAvg":0.01091,"pSD":0.00271,"pScaled":0.00481,"pRank":21,"nSamples":50,"individualID.1":7,"individualID.2":48,"transmission":false,"snpDist":6,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":2811,"infectionDiff":2188,"infectionDiffY":5.99452,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"007_049","label":"SNPs","pAvg":0.00791,"pSD":0.00407,"pScaled":0.00518,"pRank":20,"nSamples":50,"individualID.1":7,"individualID.2":49,"transmission":false,"snpDist":6,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":2547,"infectionDiff":1806,"infectionDiffY":4.94795,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"007_050","label":"SNPs","pAvg":0.00501,"pSD":0.0021,"pScaled":0.0219,"pRank":13,"nSamples":500,"individualID.1":7,"individualID.2":50,"transmission":false,"snpDist":4,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":2401,"infectionDiff":1479,"infectionDiffY":4.05205,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_051","label":"SNPs","pAvg":0.0157,"pSD":0.00373,"pScaled":0.00744,"pRank":28,"nSamples":50,"individualID.1":7,"individualID.2":51,"transmission":false,"snpDist":4,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":2315,"infectionDiff":2446,"infectionDiffY":6.70137,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"007_052","label":"SNPs","pAvg":0.00522,"pSD":0.00125,"pScaled":0.00196,"pRank":46,"nSamples":50,"individualID.1":7,"individualID.2":52,"transmission":false,"snpDist":5,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":4148,"infectionDiff":3473,"infectionDiffY":9.51507,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_053","label":"SNPs","pAvg":0.00483,"pSD":0.00109,"pScaled":0.00322,"pRank":30,"nSamples":50,"individualID.1":7,"individualID.2":53,"transmission":false,"snpDist":7,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":2836,"infectionDiff":2938,"infectionDiffY":8.04932,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_054","label":"SNPs","pAvg":0.00467,"pSD":0.00105,"pScaled":0.00122,"pRank":44,"nSamples":50,"individualID.1":7,"individualID.2":54,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":4007,"infectionDiff":3862,"infectionDiffY":10.58082,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_055","label":"SNPs","pAvg":0.01579,"pSD":0.00374,"pScaled":0.00485,"pRank":13,"nSamples":50,"individualID.1":7,"individualID.2":55,"transmission":false,"snpDist":7,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":2990,"infectionDiff":3130,"infectionDiffY":8.57534,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"007_056","label":"SNPs","pAvg":0.00531,"pSD":0.00124,"pScaled":0.00127,"pRank":32,"nSamples":50,"individualID.1":7,"individualID.2":56,"transmission":false,"snpDist":7,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":3414,"infectionDiff":3214,"infectionDiffY":8.80548,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_057","label":"SNPs","pAvg":0.0054,"pSD":0.00133,"pScaled":0.00108,"pRank":37,"nSamples":50,"individualID.1":7,"individualID.2":57,"transmission":false,"snpDist":8,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":3977,"infectionDiff":3864,"infectionDiffY":10.5863,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_058","label":"SNPs","pAvg":0.00524,"pSD":0.00131,"pScaled":0.00517,"pRank":40,"nSamples":500,"individualID.1":7,"individualID.2":58,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":4262,"infectionDiff":3553,"infectionDiffY":9.73425,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_059","label":"SNPs","pAvg":0.01817,"pSD":0.00443,"pScaled":0.02612,"pRank":15,"nSamples":500,"individualID.1":7,"individualID.2":59,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":3642,"infectionDiff":2017,"infectionDiffY":5.52603,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"007_060","label":"SNPs","pAvg":0.00782,"pSD":0.00218,"pScaled":0.00379,"pRank":46,"nSamples":50,"individualID.1":7,"individualID.2":60,"transmission":false,"snpDist":7,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":4303,"infectionDiff":4195,"infectionDiffY":11.49315,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"007_061","label":"SNPs","pAvg":0.00187,"pSD":0.00052,"pScaled":0.00355,"pRank":37,"nSamples":500,"individualID.1":7,"individualID.2":61,"transmission":false,"snpDist":6,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":4096,"infectionDiff":3413,"infectionDiffY":9.35068,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"007_062","label":"SNPs","pAvg":0.01895,"pSD":0.00476,"pScaled":0.00502,"pRank":20,"nSamples":50,"individualID.1":7,"individualID.2":62,"transmission":false,"snpDist":5,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":2831,"infectionDiff":2317,"infectionDiffY":6.34795,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"007_063","label":"SNPs","pAvg":0.00536,"pSD":0.00118,"pScaled":0.00258,"pRank":19,"nSamples":50,"individualID.1":7,"individualID.2":63,"transmission":false,"snpDist":6,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":2263,"infectionDiff":2112,"infectionDiffY":5.7863,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_064","label":"SNPs","pAvg":0.00505,"pSD":0.00113,"pScaled":0.00192,"pRank":27,"nSamples":50,"individualID.1":7,"individualID.2":64,"transmission":false,"snpDist":8,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":3046,"infectionDiff":3094,"infectionDiffY":8.47671,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"007_065","label":"SNPs","pAvg":0.00195,"pSD":0.00052,"pScaled":0.00151,"pRank":35,"nSamples":50,"individualID.1":7,"individualID.2":65,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":3054,"infectionDiff":3027,"infectionDiffY":8.29315,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"007_066","label":"SNPs","pAvg":0.00838,"pSD":0.0022,"pScaled":0.00221,"pRank":27,"nSamples":50,"individualID.1":7,"individualID.2":66,"transmission":false,"snpDist":8,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":3201,"infectionDiff":3173,"infectionDiffY":8.69315,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"007_067","label":"SNPs","pAvg":0.00532,"pSD":0.00127,"pScaled":0.00134,"pRank":54,"nSamples":50,"individualID.1":7,"individualID.2":67,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":4322,"infectionDiff":4259,"infectionDiffY":11.66849,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_068","label":"SNPs","pAvg":0.00913,"pSD":0.00239,"pScaled":0.002,"pRank":42,"nSamples":50,"individualID.1":7,"individualID.2":68,"transmission":false,"snpDist":4,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":3929,"infectionDiff":3910,"infectionDiffY":10.71233,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"007_069","label":"SNPs","pAvg":0.00148,"pSD":0.00045,"pScaled":0.00047,"pRank":68,"nSamples":50,"individualID.1":7,"individualID.2":69,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":3973,"infectionDiff":3937,"infectionDiffY":10.7863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"007_070","label":"SNPs","pAvg":0.00906,"pSD":0.00223,"pScaled":0.0028,"pRank":26,"nSamples":50,"individualID.1":7,"individualID.2":70,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":2510,"infectionDiff":2355,"infectionDiffY":6.45205,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"007_071","label":"SNPs","pAvg":0.00885,"pSD":0.00232,"pScaled":0.00901,"pRank":25,"nSamples":500,"individualID.1":7,"individualID.2":71,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":4029,"infectionDiff":2614,"infectionDiffY":7.16164,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"007_072","label":"SNPs","pAvg":0.00875,"pSD":0.00172,"pScaled":0.00266,"pRank":22,"nSamples":50,"individualID.1":7,"individualID.2":72,"transmission":false,"snpDist":6,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":2469,"infectionDiff":2533,"infectionDiffY":6.93973,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"007_073","label":"SNPs","pAvg":0.0017,"pSD":0.00052,"pScaled":0.00125,"pRank":41,"nSamples":50,"individualID.1":7,"individualID.2":73,"transmission":false,"snpDist":6,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":3550,"infectionDiff":3284,"infectionDiffY":8.99726,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"007_074","label":"SNPs","pAvg":0.00175,"pSD":0.00051,"pScaled":0.00096,"pRank":28,"nSamples":50,"individualID.1":7,"individualID.2":74,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":3391,"infectionDiff":2664,"infectionDiffY":7.29863,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"007_075","label":"SNPs","pAvg":0.00016,"pSD":0.0005,"pScaled":0.00069,"pRank":85,"nSamples":500,"individualID.1":7,"individualID.2":75,"transmission":false,"snpDist":11,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":4057,"infectionDiff":4237,"infectionDiffY":11.60822,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"007_076","label":"SNPs","pAvg":0.00842,"pSD":0.0017,"pScaled":0.00206,"pRank":43,"nSamples":50,"individualID.1":7,"individualID.2":76,"transmission":false,"snpDist":4,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":4292,"infectionDiff":3911,"infectionDiffY":10.71507,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"007_077","label":"SNPs","pAvg":0.00493,"pSD":0.00129,"pScaled":0.00109,"pRank":51,"nSamples":50,"individualID.1":7,"individualID.2":77,"transmission":false,"snpDist":3,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":3445,"infectionDiff":3626,"infectionDiffY":9.93425,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_078","label":"SNPs","pAvg":0.00739,"pSD":0.00206,"pScaled":0.00164,"pRank":63,"nSamples":50,"individualID.1":7,"individualID.2":78,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":4135,"infectionDiff":3939,"infectionDiffY":10.79178,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"007_079","label":"SNPs","pAvg":0.00529,"pSD":0.00128,"pScaled":0.00266,"pRank":21,"nSamples":50,"individualID.1":7,"individualID.2":79,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":3544,"infectionDiff":3222,"infectionDiffY":8.8274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_080","label":"SNPs","pAvg":0.002,"pSD":0.00056,"pScaled":0.01458,"pRank":15,"nSamples":500,"individualID.1":7,"individualID.2":80,"transmission":false,"snpDist":8,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":3553,"infectionDiff":3154,"infectionDiffY":8.6411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"007_081","label":"SNPs","pAvg":0.00163,"pSD":0.00054,"pScaled":0.0004,"pRank":86,"nSamples":50,"individualID.1":7,"individualID.2":81,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":4268,"infectionDiff":4321,"infectionDiffY":11.83836,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"007_082","label":"SNPs","pAvg":0.00868,"pSD":0.00217,"pScaled":0.00189,"pRank":37,"nSamples":50,"individualID.1":7,"individualID.2":82,"transmission":false,"snpDist":5,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":4273,"infectionDiff":4398,"infectionDiffY":12.04932,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"007_083","label":"SNPs","pAvg":0.00924,"pSD":0.00239,"pScaled":0.0036,"pRank":39,"nSamples":50,"individualID.1":7,"individualID.2":83,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":4048,"infectionDiff":3868,"infectionDiffY":10.59726,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"007_084","label":"SNPs","pAvg":0.00553,"pSD":0.0013,"pScaled":0.00279,"pRank":11,"nSamples":50,"individualID.1":7,"individualID.2":84,"transmission":false,"snpDist":10,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":4292,"infectionDiff":3916,"infectionDiffY":10.72877,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_085","label":"SNPs","pAvg":0.00439,"pSD":0.00104,"pScaled":0.0015,"pRank":17,"nSamples":50,"individualID.1":7,"individualID.2":85,"transmission":false,"snpDist":8,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":3403,"infectionDiff":3581,"infectionDiffY":9.81096,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_086","label":"SNPs","pAvg":0.0015,"pSD":0.00046,"pScaled":0.00048,"pRank":45,"nSamples":50,"individualID.1":7,"individualID.2":86,"transmission":false,"snpDist":5,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":3241,"infectionDiff":3209,"infectionDiffY":8.79178,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"007_087","label":"SNPs","pAvg":0.00222,"pSD":0.00065,"pScaled":0.00181,"pRank":24,"nSamples":50,"individualID.1":7,"individualID.2":87,"transmission":false,"snpDist":9,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":3776,"infectionDiff":3749,"infectionDiffY":10.27123,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"007_088","label":"SNPs","pAvg":0.00766,"pSD":0.00224,"pScaled":0.00148,"pRank":43,"nSamples":50,"individualID.1":7,"individualID.2":88,"transmission":false,"snpDist":4,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":3886,"infectionDiff":4084,"infectionDiffY":11.18904,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"007_089","label":"SNPs","pAvg":0.00468,"pSD":0.00109,"pScaled":0.0015,"pRank":19,"nSamples":50,"individualID.1":7,"individualID.2":89,"transmission":false,"snpDist":9,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":4177,"infectionDiff":3920,"infectionDiffY":10.73973,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_090","label":"SNPs","pAvg":0.00471,"pSD":0.00093,"pScaled":0.00122,"pRank":28,"nSamples":50,"individualID.1":7,"individualID.2":90,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":4248,"infectionDiff":4146,"infectionDiffY":11.3589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_091","label":"SNPs","pAvg":0.0079,"pSD":0.00214,"pScaled":0.00396,"pRank":17,"nSamples":50,"individualID.1":7,"individualID.2":91,"transmission":false,"snpDist":9,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":4269,"infectionDiff":3737,"infectionDiffY":10.23836,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"007_092","label":"SNPs","pAvg":0.00538,"pSD":0.00139,"pScaled":0.00218,"pRank":10,"nSamples":50,"individualID.1":7,"individualID.2":92,"transmission":false,"snpDist":9,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":4316,"infectionDiff":3889,"infectionDiffY":10.65479,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_093","label":"SNPs","pAvg":0.00507,"pSD":0.00136,"pScaled":0.00138,"pRank":21,"nSamples":50,"individualID.1":7,"individualID.2":93,"transmission":false,"snpDist":10,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":4153,"infectionDiff":4114,"infectionDiffY":11.27123,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"007_094","label":"SNPs","pAvg":0.00201,"pSD":0.00053,"pScaled":0.00066,"pRank":55,"nSamples":50,"individualID.1":7,"individualID.2":94,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":4199,"infectionDiff":4386,"infectionDiffY":12.01644,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"007_095","label":"SNPs","pAvg":0.00223,"pSD":0.00062,"pScaled":0.00113,"pRank":25,"nSamples":50,"individualID.1":7,"individualID.2":95,"transmission":false,"snpDist":9,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":3782,"infectionDiff":3818,"infectionDiffY":10.46027,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"007_096","label":"SNPs","pAvg":0.00198,"pSD":0.00056,"pScaled":0.00069,"pRank":43,"nSamples":50,"individualID.1":7,"individualID.2":96,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":3876,"infectionDiff":4050,"infectionDiffY":11.09589,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"007_097","label":"SNPs","pAvg":0.00837,"pSD":0.00217,"pScaled":0.00188,"pRank":29,"nSamples":50,"individualID.1":7,"individualID.2":97,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":4119,"infectionDiff":4206,"infectionDiffY":11.52329,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"007_098","label":"SNPs","pAvg":0.00447,"pSD":0.00101,"pScaled":0.00127,"pRank":24,"nSamples":50,"individualID.1":7,"individualID.2":98,"transmission":false,"snpDist":9,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":3938,"infectionDiff":3979,"infectionDiffY":10.90137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"007_099","label":"SNPs","pAvg":0.00178,"pSD":0.00053,"pScaled":0.00061,"pRank":46,"nSamples":50,"individualID.1":7,"individualID.2":99,"transmission":false,"snpDist":6,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":3921,"infectionDiff":3843,"infectionDiffY":10.52877,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"007_100","label":"SNPs","pAvg":0.01056,"pSD":0.00227,"pScaled":0.00311,"pRank":36,"nSamples":50,"individualID.1":7,"individualID.2":100,"transmission":false,"infectionDate.1":"1987-07-15 05:58:16","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1988-02-23 12:34:50","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":4120,"infectionDiff":4221,"infectionDiffY":11.56438,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"008_003","label":"SNPs","pAvg":0.00218,"pSD":0.00708,"pScaled":0.00686,"pRank":15,"nSamples":500,"individualID.1":8,"individualID.2":3,"transmission":false,"snpDist":11,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1990-12-11 19:24:08","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1998-10-30 22:42:57","sampleDiff":3121,"infectionDiff":1454,"infectionDiffY":3.98356,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"008_004","label":"SNPs","pAvg":0.0496,"pSD":0.01333,"pScaled":0.02846,"pRank":3,"nSamples":50,"individualID.1":8,"individualID.2":4,"transmission":false,"snpDist":4,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1987-02-03 23:11:47","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1988-01-10 13:17:28","sampleDiff":-825,"infectionDiff":48,"infectionDiffY":0.13151,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"008_006","label":"SNPs","pAvg":0.00651,"pSD":0.00198,"pScaled":0.00416,"pRank":21,"nSamples":50,"individualID.1":8,"individualID.2":6,"transmission":false,"snpDist":7,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":837,"infectionDiff":2012,"infectionDiffY":5.51233,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"008_007","label":"SNPs","pAvg":0.04304,"pSD":0.01243,"pScaled":0.01449,"pRank":7,"nSamples":50,"individualID.1":8,"individualID.2":7,"transmission":false,"snpDist":4,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1987-07-15 05:58:16","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1988-02-23 12:34:50","sampleDiff":-781,"infectionDiff":209,"infectionDiffY":0.5726,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"008_009","label":"SNPs","pAvg":0.00148,"pSD":0.00464,"pScaled":0.0066,"pRank":34,"nSamples":500,"individualID.1":8,"individualID.2":9,"transmission":false,"snpDist":13,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":3361,"infectionDiff":2695,"infectionDiffY":7.38356,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"008_010","label":"SNPs","pAvg":0.00772,"pSD":0.00393,"pScaled":0.0056,"pRank":20,"nSamples":50,"individualID.1":8,"individualID.2":10,"transmission":false,"snpDist":6,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":812,"infectionDiff":1736,"infectionDiffY":4.75616,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"008_011","label":"SNPs","pAvg":0.02056,"pSD":0.00559,"pScaled":0.00822,"pRank":9,"nSamples":50,"individualID.1":8,"individualID.2":11,"transmission":false,"snpDist":6,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1988-04-18 02:31:21","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1991-10-25 12:28:14","sampleDiff":559,"infectionDiff":487,"infectionDiffY":1.33425,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"008_012","label":"SNPs","pAvg":0.03744,"pSD":0.01244,"pScaled":0.00939,"pRank":9,"nSamples":50,"individualID.1":8,"individualID.2":12,"transmission":false,"snpDist":5,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1988-04-12 22:57:51","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1988-09-04 19:08:48","sampleDiff":-587,"infectionDiff":482,"infectionDiffY":1.32055,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"008_013","label":"SNPs","pAvg":0.09764,"pSD":0.02001,"pScaled":0.0338,"pRank":5,"nSamples":50,"individualID.1":8,"individualID.2":13,"transmission":true,"snpDist":5,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1987-03-23 16:58:33","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1987-07-30 23:29:57","sampleDiff":-989,"infectionDiff":95,"infectionDiffY":0.26027,"timeCat":"1","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"008_014","label":"SNPs","pAvg":0.00357,"pSD":0.00107,"pScaled":0.00196,"pRank":33,"nSamples":50,"individualID.1":8,"individualID.2":14,"transmission":false,"snpDist":6,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":1392,"infectionDiff":2273,"infectionDiffY":6.2274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"008_015","label":"SNPs","pAvg":0.01763,"pSD":0.00492,"pScaled":0.00691,"pRank":11,"nSamples":50,"individualID.1":8,"individualID.2":15,"transmission":false,"snpDist":6,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1988-08-20 08:24:18","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1992-08-15 08:05:31","sampleDiff":854,"infectionDiff":611,"infectionDiffY":1.67397,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"008_016","label":"SNPs","pAvg":0.04706,"pSD":0.01247,"pScaled":0.11729,"pRank":2,"nSamples":500,"individualID.1":8,"individualID.2":16,"transmission":false,"snpDist":8,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1989-04-18 04:17:39","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1995-12-16 04:24:53","sampleDiff":2071,"infectionDiff":852,"infectionDiffY":2.33425,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"008_017","label":"SNPs","pAvg":0.00583,"pSD":0.00148,"pScaled":0.00813,"pRank":26,"nSamples":500,"individualID.1":8,"individualID.2":17,"transmission":false,"snpDist":9,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":2530,"infectionDiff":2045,"infectionDiffY":5.60274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"008_018","label":"SNPs","pAvg":0.00867,"pSD":0.00249,"pScaled":0.00983,"pRank":29,"nSamples":500,"individualID.1":8,"individualID.2":18,"transmission":false,"snpDist":8,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":1284,"infectionDiff":2469,"infectionDiffY":6.76438,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"008_019","label":"SNPs","pAvg":0.02433,"pSD":0.00644,"pScaled":0.0221,"pRank":4,"nSamples":50,"individualID.1":8,"individualID.2":19,"transmission":false,"snpDist":7,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1987-12-12 09:17:01","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1991-09-26 03:18:54","sampleDiff":529,"infectionDiff":359,"infectionDiffY":0.98356,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"008_020","label":"SNPs","pAvg":0.06188,"pSD":0.01311,"pScaled":0.01939,"pRank":6,"nSamples":50,"individualID.1":8,"individualID.2":20,"transmission":false,"snpDist":5,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1987-03-30 17:23:41","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1994-08-15 09:04:39","sampleDiff":1584,"infectionDiff":102,"infectionDiffY":0.27945,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"008_021","label":"SNPs","pAvg":0.00386,"pSD":0.00113,"pScaled":0.00369,"pRank":37,"nSamples":500,"individualID.1":8,"individualID.2":21,"transmission":false,"snpDist":7,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":2729,"infectionDiff":2467,"infectionDiffY":6.7589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"008_022","label":"SNPs","pAvg":0.02266,"pSD":0.00721,"pScaled":0.04421,"pRank":10,"nSamples":500,"individualID.1":8,"individualID.2":22,"transmission":false,"snpDist":7,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1989-06-06 04:07:23","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1991-10-22 14:29:51","sampleDiff":556,"infectionDiff":901,"infectionDiffY":2.46849,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"008_023","label":"SNPs","pAvg":0.00623,"pSD":0.00152,"pScaled":0.00277,"pRank":55,"nSamples":50,"individualID.1":8,"individualID.2":23,"transmission":false,"snpDist":9,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":3518,"infectionDiff":4234,"infectionDiffY":11.6,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"008_024","label":"SNPs","pAvg":0.00741,"pSD":0.00322,"pScaled":0.00573,"pRank":17,"nSamples":50,"individualID.1":8,"individualID.2":24,"transmission":false,"snpDist":8,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1991-02-07 21:59:42","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1992-10-05 23:05:30","sampleDiff":905,"infectionDiff":1513,"infectionDiffY":4.14521,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"008_025","label":"SNPs","pAvg":0.04054,"pSD":0.01272,"pScaled":0.0092,"pRank":14,"nSamples":50,"individualID.1":8,"individualID.2":25,"transmission":false,"snpDist":5,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1989-07-09 14:49:21","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1990-01-24 23:05:50","sampleDiff":-80,"infectionDiff":934,"infectionDiffY":2.5589,"timeCat":"3","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"008_026","label":"SNPs","pAvg":0.00685,"pSD":0.0023,"pScaled":0.00241,"pRank":37,"nSamples":50,"individualID.1":8,"individualID.2":26,"transmission":false,"snpDist":8,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":3122,"infectionDiff":3531,"infectionDiffY":9.67397,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"008_027","label":"SNPs","pAvg":0.00401,"pSD":0.00119,"pScaled":0.00143,"pRank":72,"nSamples":50,"individualID.1":8,"individualID.2":27,"transmission":false,"snpDist":7,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":3295,"infectionDiff":4121,"infectionDiffY":11.29041,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"008_028","label":"SNPs","pAvg":0.00718,"pSD":0.00172,"pScaled":0.00201,"pRank":44,"nSamples":50,"individualID.1":8,"individualID.2":28,"transmission":false,"snpDist":7,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":2511,"infectionDiff":2945,"infectionDiffY":8.06849,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"008_029","label":"SNPs","pAvg":0.0043,"pSD":0.002,"pScaled":0.0106,"pRank":16,"nSamples":500,"individualID.1":8,"individualID.2":29,"transmission":false,"snpDist":7,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1990-12-27 23:28:20","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1992-03-01 23:20:54","sampleDiff":687,"infectionDiff":1471,"infectionDiffY":4.03014,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"008_030","label":"SNPs","pAvg":0.00692,"pSD":0.00217,"pScaled":0.00484,"pRank":21,"nSamples":50,"individualID.1":8,"individualID.2":30,"transmission":false,"snpDist":8,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":762,"infectionDiff":1952,"infectionDiffY":5.34795,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"008_031","label":"SNPs","pAvg":0.00641,"pSD":0.00263,"pScaled":0.01058,"pRank":16,"nSamples":500,"individualID.1":8,"individualID.2":31,"transmission":false,"snpDist":7,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1991-01-03 16:49:07","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1991-07-17 03:37:35","sampleDiff":458,"infectionDiff":1477,"infectionDiffY":4.04658,"timeCat":"5","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"008_032","label":"SNPs","pAvg":0.0112,"pSD":0.00226,"pScaled":0.00764,"pRank":17,"nSamples":50,"individualID.1":8,"individualID.2":32,"transmission":false,"snpDist":10,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":2192,"infectionDiff":1898,"infectionDiffY":5.2,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"008_033","label":"SNPs","pAvg":0.00729,"pSD":0.00222,"pScaled":0.00332,"pRank":25,"nSamples":50,"individualID.1":8,"individualID.2":33,"transmission":false,"snpDist":8,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":2739,"infectionDiff":3802,"infectionDiffY":10.41644,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"008_034","label":"SNPs","pAvg":0.00016,"pSD":0.00055,"pScaled":0.00054,"pRank":19,"nSamples":500,"individualID.1":8,"individualID.2":34,"transmission":false,"snpDist":11,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":1761,"infectionDiff":1517,"infectionDiffY":4.15616,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"008_035","label":"SNPs","pAvg":0.00875,"pSD":0.00222,"pScaled":0.00228,"pRank":34,"nSamples":50,"individualID.1":8,"individualID.2":35,"transmission":false,"snpDist":6,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":2701,"infectionDiff":2600,"infectionDiffY":7.12329,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"008_036","label":"SNPs","pAvg":0.00588,"pSD":0.00147,"pScaled":0.00159,"pRank":54,"nSamples":50,"individualID.1":8,"individualID.2":36,"transmission":false,"snpDist":6,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":2500,"infectionDiff":3410,"infectionDiffY":9.34247,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"008_037","label":"SNPs","pAvg":0.00116,"pSD":0.0036,"pScaled":0.00116,"pRank":48,"nSamples":500,"individualID.1":8,"individualID.2":37,"transmission":false,"snpDist":11,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":2888,"infectionDiff":2932,"infectionDiffY":8.03288,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"008_038","label":"SNPs","pAvg":0.00064,"pSD":0.002,"pScaled":0.00076,"pRank":41,"nSamples":500,"individualID.1":8,"individualID.2":38,"transmission":false,"snpDist":11,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":1949,"infectionDiff":2577,"infectionDiffY":7.06027,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"008_039","label":"SNPs","pAvg":0.00069,"pSD":0.00217,"pScaled":0.00148,"pRank":27,"nSamples":500,"individualID.1":8,"individualID.2":39,"transmission":false,"snpDist":13,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":2115,"infectionDiff":2023,"infectionDiffY":5.54247,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"008_040","label":"SNPs","pAvg":0.00445,"pSD":0.00123,"pScaled":0.00398,"pRank":54,"nSamples":500,"individualID.1":8,"individualID.2":40,"transmission":false,"snpDist":10,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":2523,"infectionDiff":3666,"infectionDiffY":10.04384,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"008_041","label":"SNPs","pAvg":0.00074,"pSD":0.00233,"pScaled":0.00193,"pRank":23,"nSamples":500,"individualID.1":8,"individualID.2":41,"transmission":false,"snpDist":11,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":3373,"infectionDiff":1867,"infectionDiffY":5.11507,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"008_042","label":"SNPs","pAvg":0.00404,"pSD":0.00179,"pScaled":0.00149,"pRank":20,"nSamples":50,"individualID.1":8,"individualID.2":42,"transmission":false,"snpDist":7,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":776,"infectionDiff":1519,"infectionDiffY":4.16164,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"008_043","label":"SNPs","pAvg":0.01297,"pSD":0.00317,"pScaled":0.01751,"pRank":17,"nSamples":500,"individualID.1":8,"individualID.2":43,"transmission":false,"snpDist":10,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":3498,"infectionDiff":2286,"infectionDiffY":6.26301,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"008_044","label":"SNPs","pAvg":0.0067,"pSD":0.00176,"pScaled":0.0018,"pRank":22,"nSamples":50,"individualID.1":8,"individualID.2":44,"transmission":false,"snpDist":8,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":1118,"infectionDiff":2187,"infectionDiffY":5.99178,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"008_045","label":"SNPs","pAvg":0.00218,"pSD":0.00682,"pScaled":0.00132,"pRank":43,"nSamples":500,"individualID.1":8,"individualID.2":45,"transmission":false,"snpDist":11,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":2896,"infectionDiff":3177,"infectionDiffY":8.70411,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"1","snpClose":false} {"pairID":"008_046","label":"SNPs","pAvg":0.0119,"pSD":0.00336,"pScaled":0.00688,"pRank":18,"nSamples":50,"individualID.1":8,"individualID.2":46,"transmission":false,"snpDist":9,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":1801,"infectionDiff":2132,"infectionDiffY":5.8411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"008_047","label":"SNPs","pAvg":0.01095,"pSD":0.00226,"pScaled":0.00236,"pRank":33,"nSamples":50,"individualID.1":8,"individualID.2":47,"transmission":false,"snpDist":9,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":1747,"infectionDiff":2863,"infectionDiffY":7.84384,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"008_048","label":"SNPs","pAvg":0.0189,"pSD":0.00488,"pScaled":0.00833,"pRank":13,"nSamples":50,"individualID.1":8,"individualID.2":48,"transmission":false,"snpDist":10,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":2030,"infectionDiff":2397,"infectionDiffY":6.56712,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"008_049","label":"SNPs","pAvg":0.00442,"pSD":0.00121,"pScaled":0.00289,"pRank":24,"nSamples":50,"individualID.1":8,"individualID.2":49,"transmission":false,"snpDist":10,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":1765,"infectionDiff":2015,"infectionDiffY":5.52055,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"008_050","label":"SNPs","pAvg":0.00135,"pSD":0.0007,"pScaled":0.00589,"pRank":19,"nSamples":500,"individualID.1":8,"individualID.2":50,"transmission":false,"snpDist":8,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":1620,"infectionDiff":1687,"infectionDiffY":4.62192,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"008_051","label":"SNPs","pAvg":0.0133,"pSD":0.00374,"pScaled":0.0063,"pRank":29,"nSamples":50,"individualID.1":8,"individualID.2":51,"transmission":false,"snpDist":7,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":1534,"infectionDiff":2655,"infectionDiffY":7.27397,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"008_052","label":"SNPs","pAvg":0.00667,"pSD":0.00214,"pScaled":0.0025,"pRank":44,"nSamples":50,"individualID.1":8,"individualID.2":52,"transmission":false,"snpDist":8,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":3367,"infectionDiff":3682,"infectionDiffY":10.08767,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"008_053","label":"SNPs","pAvg":0.00072,"pSD":0.00226,"pScaled":0.00048,"pRank":51,"nSamples":500,"individualID.1":8,"individualID.2":53,"transmission":false,"snpDist":11,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":2054,"infectionDiff":3147,"infectionDiffY":8.62192,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"008_054","label":"SNPs","pAvg":0.00077,"pSD":0.00241,"pScaled":0.0002,"pRank":68,"nSamples":500,"individualID.1":8,"individualID.2":54,"transmission":false,"snpDist":11,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":3226,"infectionDiff":4071,"infectionDiffY":11.15342,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"008_055","label":"SNPs","pAvg":0.00085,"pSD":0.00266,"pScaled":0.00026,"pRank":53,"nSamples":500,"individualID.1":8,"individualID.2":55,"transmission":false,"snpDist":11,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":2209,"infectionDiff":3339,"infectionDiffY":9.14795,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"008_056","label":"SNPs","pAvg":0.00069,"pSD":0.00222,"pScaled":0.00017,"pRank":59,"nSamples":500,"individualID.1":8,"individualID.2":56,"transmission":false,"snpDist":11,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":2633,"infectionDiff":3423,"infectionDiffY":9.37808,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"008_057","label":"SNPs","pAvg":0.00066,"pSD":0.00206,"pScaled":0.00013,"pRank":67,"nSamples":500,"individualID.1":8,"individualID.2":57,"transmission":false,"snpDist":12,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":3196,"infectionDiff":4073,"infectionDiffY":11.1589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"008_058","label":"SNPs","pAvg":0.00066,"pSD":0.00211,"pScaled":0.00066,"pRank":63,"nSamples":500,"individualID.1":8,"individualID.2":58,"transmission":false,"snpDist":12,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":3481,"infectionDiff":3762,"infectionDiffY":10.30685,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"008_059","label":"SNPs","pAvg":0.00112,"pSD":0.00346,"pScaled":0.00161,"pRank":31,"nSamples":500,"individualID.1":8,"individualID.2":59,"transmission":false,"snpDist":13,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":2860,"infectionDiff":2226,"infectionDiffY":6.09863,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"2","snpClose":false} {"pairID":"008_060","label":"SNPs","pAvg":0.00046,"pSD":0.00145,"pScaled":0.00022,"pRank":90,"nSamples":500,"individualID.1":8,"individualID.2":60,"transmission":false,"snpDist":11,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":3522,"infectionDiff":4404,"infectionDiffY":12.06575,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"008_061","label":"SNPs","pAvg":0.00386,"pSD":0.00113,"pScaled":0.00734,"pRank":31,"nSamples":500,"individualID.1":8,"individualID.2":61,"transmission":false,"snpDist":10,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":3315,"infectionDiff":3622,"infectionDiffY":9.92329,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"008_062","label":"SNPs","pAvg":0.01077,"pSD":0.00235,"pScaled":0.00285,"pRank":28,"nSamples":50,"individualID.1":8,"individualID.2":62,"transmission":false,"snpDist":9,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":2050,"infectionDiff":2526,"infectionDiffY":6.92055,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"008_063","label":"SNPs","pAvg":0.00137,"pSD":0.0005,"pScaled":0.00066,"pRank":34,"nSamples":50,"individualID.1":8,"individualID.2":63,"transmission":false,"snpDist":10,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":1482,"infectionDiff":2321,"infectionDiffY":6.3589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"008_064","label":"SNPs","pAvg":0.00115,"pSD":0.0036,"pScaled":0.00044,"pRank":47,"nSamples":500,"individualID.1":8,"individualID.2":64,"transmission":false,"snpDist":12,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":2265,"infectionDiff":3303,"infectionDiffY":9.04932,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"008_065","label":"SNPs","pAvg":0.00038,"pSD":0.0012,"pScaled":0.00029,"pRank":53,"nSamples":500,"individualID.1":8,"individualID.2":65,"transmission":false,"snpDist":11,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":2273,"infectionDiff":3236,"infectionDiffY":8.86575,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"008_066","label":"SNPs","pAvg":0.00068,"pSD":0.00212,"pScaled":0.00018,"pRank":56,"nSamples":500,"individualID.1":8,"individualID.2":66,"transmission":false,"snpDist":12,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":2420,"infectionDiff":3382,"infectionDiffY":9.26575,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"008_067","label":"SNPs","pAvg":0.00071,"pSD":0.00225,"pScaled":0.00018,"pRank":88,"nSamples":500,"individualID.1":8,"individualID.2":67,"transmission":false,"snpDist":13,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":3541,"infectionDiff":4468,"infectionDiffY":12.2411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"008_068","label":"SNPs","pAvg":0.0056,"pSD":0.00131,"pScaled":0.00122,"pRank":60,"nSamples":50,"individualID.1":8,"individualID.2":68,"transmission":false,"snpDist":8,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":3148,"infectionDiff":4119,"infectionDiffY":11.28493,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"008_069","label":"SNPs","pAvg":0.00444,"pSD":0.00129,"pScaled":0.00142,"pRank":35,"nSamples":50,"individualID.1":8,"individualID.2":69,"transmission":false,"snpDist":9,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":3192,"infectionDiff":4146,"infectionDiffY":11.3589,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"008_070","label":"SNPs","pAvg":0.00391,"pSD":0.00119,"pScaled":0.00121,"pRank":39,"nSamples":50,"individualID.1":8,"individualID.2":70,"transmission":false,"snpDist":10,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":1729,"infectionDiff":2564,"infectionDiffY":7.02466,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"008_071","label":"SNPs","pAvg":0.00039,"pSD":0.00124,"pScaled":0.0004,"pRank":46,"nSamples":500,"individualID.1":8,"individualID.2":71,"transmission":false,"snpDist":12,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":3247,"infectionDiff":2822,"infectionDiffY":7.73151,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"008_072","label":"SNPs","pAvg":0.00316,"pSD":0.0011,"pScaled":0.00096,"pRank":34,"nSamples":50,"individualID.1":8,"individualID.2":72,"transmission":false,"snpDist":10,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":1688,"infectionDiff":2741,"infectionDiffY":7.50959,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"008_073","label":"SNPs","pAvg":0.00207,"pSD":0.00063,"pScaled":0.00152,"pRank":34,"nSamples":50,"individualID.1":8,"individualID.2":73,"transmission":false,"snpDist":9,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":2769,"infectionDiff":3493,"infectionDiffY":9.56986,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"008_074","label":"SNPs","pAvg":0.0013,"pSD":0.0005,"pScaled":0.00071,"pRank":39,"nSamples":50,"individualID.1":8,"individualID.2":74,"transmission":false,"snpDist":8,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":2609,"infectionDiff":2873,"infectionDiffY":7.87123,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"008_075","label":"SNPs","pAvg":0.00016,"pSD":0.00051,"pScaled":0.00069,"pRank":86,"nSamples":500,"individualID.1":8,"individualID.2":75,"transmission":false,"snpDist":15,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":3276,"infectionDiff":4446,"infectionDiffY":12.18082,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"008_076","label":"SNPs","pAvg":0.01454,"pSD":0.00426,"pScaled":0.00356,"pRank":29,"nSamples":50,"individualID.1":8,"individualID.2":76,"transmission":false,"snpDist":8,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":3510,"infectionDiff":4119,"infectionDiffY":11.28493,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"008_077","label":"SNPs","pAvg":0.00617,"pSD":0.00198,"pScaled":0.00136,"pRank":47,"nSamples":50,"individualID.1":8,"individualID.2":77,"transmission":false,"snpDist":7,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":2663,"infectionDiff":3835,"infectionDiffY":10.50685,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"008_078","label":"SNPs","pAvg":0.00436,"pSD":0.00112,"pScaled":0.00096,"pRank":75,"nSamples":50,"individualID.1":8,"individualID.2":78,"transmission":false,"snpDist":7,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":3354,"infectionDiff":4147,"infectionDiffY":11.36164,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"008_079","label":"SNPs","pAvg":0.00015,"pSD":0.00047,"pScaled":0.00007,"pRank":61,"nSamples":500,"individualID.1":8,"individualID.2":79,"transmission":false,"snpDist":12,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":2763,"infectionDiff":3431,"infectionDiffY":9.4,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"008_080","label":"SNPs","pAvg":0.00022,"pSD":0.00071,"pScaled":0.00163,"pRank":51,"nSamples":500,"individualID.1":8,"individualID.2":80,"transmission":false,"snpDist":11,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":2771,"infectionDiff":3363,"infectionDiffY":9.2137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"008_081","label":"SNPs","pAvg":0.00236,"pSD":0.0007,"pScaled":0.00059,"pRank":68,"nSamples":50,"individualID.1":8,"individualID.2":81,"transmission":false,"snpDist":7,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":3487,"infectionDiff":4530,"infectionDiffY":12.41096,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"008_082","label":"SNPs","pAvg":0.00374,"pSD":0.00112,"pScaled":0.00082,"pRank":80,"nSamples":50,"individualID.1":8,"individualID.2":82,"transmission":false,"snpDist":9,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":3491,"infectionDiff":4607,"infectionDiffY":12.62192,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"008_083","label":"SNPs","pAvg":0.00598,"pSD":0.0014,"pScaled":0.00233,"pRank":53,"nSamples":50,"individualID.1":8,"individualID.2":83,"transmission":false,"snpDist":9,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":3267,"infectionDiff":4077,"infectionDiffY":11.16986,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"008_084","label":"SNPs","pAvg":0.00015,"pSD":0.00047,"pScaled":0.00007,"pRank":81,"nSamples":500,"individualID.1":8,"individualID.2":84,"transmission":false,"snpDist":14,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":3510,"infectionDiff":4125,"infectionDiffY":11.30137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"008_085","label":"SNPs","pAvg":0.00017,"pSD":0.00052,"pScaled":0.00006,"pRank":65,"nSamples":500,"individualID.1":8,"individualID.2":85,"transmission":false,"snpDist":12,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":2622,"infectionDiff":3790,"infectionDiffY":10.38356,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"008_086","label":"SNPs","pAvg":0.00446,"pSD":0.00119,"pScaled":0.00142,"pRank":27,"nSamples":50,"individualID.1":8,"individualID.2":86,"transmission":false,"snpDist":8,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":2460,"infectionDiff":3418,"infectionDiffY":9.36438,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"008_087","label":"SNPs","pAvg":0.00059,"pSD":0.00183,"pScaled":0.00048,"pRank":49,"nSamples":500,"individualID.1":8,"individualID.2":87,"transmission":false,"snpDist":12,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":2995,"infectionDiff":3958,"infectionDiffY":10.84384,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"008_088","label":"SNPs","pAvg":0.00436,"pSD":0.00134,"pScaled":0.00084,"pRank":72,"nSamples":50,"individualID.1":8,"individualID.2":88,"transmission":false,"snpDist":8,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":3105,"infectionDiff":4293,"infectionDiffY":11.76164,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"008_089","label":"SNPs","pAvg":0.00018,"pSD":0.00056,"pScaled":0.00006,"pRank":79,"nSamples":500,"individualID.1":8,"individualID.2":89,"transmission":false,"snpDist":13,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":3396,"infectionDiff":4129,"infectionDiffY":11.31233,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"008_090","label":"SNPs","pAvg":0.00017,"pSD":0.00053,"pScaled":0.00004,"pRank":89,"nSamples":500,"individualID.1":8,"individualID.2":90,"transmission":false,"snpDist":14,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":3467,"infectionDiff":4355,"infectionDiffY":11.93151,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"008_091","label":"SNPs","pAvg":0.00047,"pSD":0.00145,"pScaled":0.00023,"pRank":68,"nSamples":500,"individualID.1":8,"individualID.2":91,"transmission":false,"snpDist":13,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":3488,"infectionDiff":3946,"infectionDiffY":10.81096,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"008_092","label":"SNPs","pAvg":0.00015,"pSD":0.00047,"pScaled":0.00006,"pRank":78,"nSamples":500,"individualID.1":8,"individualID.2":92,"transmission":false,"snpDist":13,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":3535,"infectionDiff":4097,"infectionDiffY":11.22466,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"008_093","label":"SNPs","pAvg":0.00027,"pSD":0.00086,"pScaled":0.00007,"pRank":79,"nSamples":500,"individualID.1":8,"individualID.2":93,"transmission":false,"snpDist":14,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":3372,"infectionDiff":4323,"infectionDiffY":11.84384,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"008_094","label":"SNPs","pAvg":0.00038,"pSD":0.00118,"pScaled":0.00012,"pRank":87,"nSamples":500,"individualID.1":8,"individualID.2":94,"transmission":false,"snpDist":12,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":3418,"infectionDiff":4595,"infectionDiffY":12.58904,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"008_095","label":"SNPs","pAvg":0.00059,"pSD":0.00184,"pScaled":0.0003,"pRank":49,"nSamples":500,"individualID.1":8,"individualID.2":95,"transmission":false,"snpDist":12,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":3000,"infectionDiff":4027,"infectionDiffY":11.03288,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"008_096","label":"SNPs","pAvg":0.00039,"pSD":0.00121,"pScaled":0.00014,"pRank":77,"nSamples":500,"individualID.1":8,"individualID.2":96,"transmission":false,"snpDist":12,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":3095,"infectionDiff":4259,"infectionDiffY":11.66849,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"008_097","label":"SNPs","pAvg":0.00046,"pSD":0.00143,"pScaled":0.0001,"pRank":93,"nSamples":500,"individualID.1":8,"individualID.2":97,"transmission":false,"snpDist":13,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":3338,"infectionDiff":4415,"infectionDiffY":12.09589,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"008_098","label":"SNPs","pAvg":0.00017,"pSD":0.00052,"pScaled":0.00005,"pRank":86,"nSamples":500,"individualID.1":8,"individualID.2":98,"transmission":false,"snpDist":13,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":3157,"infectionDiff":4188,"infectionDiffY":11.47397,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"008_099","label":"SNPs","pAvg":0.00382,"pSD":0.00095,"pScaled":0.00131,"pRank":34,"nSamples":50,"individualID.1":8,"individualID.2":99,"transmission":false,"snpDist":9,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":3140,"infectionDiff":4052,"infectionDiffY":11.10137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"008_100","label":"SNPs","pAvg":0.01311,"pSD":0.00405,"pScaled":0.00386,"pRank":33,"nSamples":50,"individualID.1":8,"individualID.2":100,"transmission":false,"snpDist":9,"infectionDate.1":"1986-12-18 07:49:26","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1990-04-14 16:45:48","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":3339,"infectionDiff":4430,"infectionDiffY":12.13699,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"009_023","label":"SNPs","pAvg":0.00057,"pSD":0.00188,"pScaled":0.00025,"pRank":85,"nSamples":500,"individualID.1":9,"individualID.2":23,"transmission":false,"snpDist":14,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":157,"infectionDiff":1539,"infectionDiffY":4.21644,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"009_026","label":"SNPs","pAvg":0.00259,"pSD":0.0082,"pScaled":0.00091,"pRank":54,"nSamples":500,"individualID.1":9,"individualID.2":26,"transmission":false,"snpDist":13,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":-239,"infectionDiff":836,"infectionDiffY":2.29041,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"009_027","label":"SNPs","pAvg":0.00094,"pSD":0.00296,"pScaled":0.00034,"pRank":80,"nSamples":500,"individualID.1":9,"individualID.2":27,"transmission":false,"snpDist":12,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":-66,"infectionDiff":1425,"infectionDiffY":3.90411,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"009_028","label":"SNPs","pAvg":0.0034,"pSD":0.01049,"pScaled":0.00095,"pRank":49,"nSamples":500,"individualID.1":9,"individualID.2":28,"transmission":false,"snpDist":12,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":-849,"infectionDiff":250,"infectionDiffY":0.68493,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"009_033","label":"SNPs","pAvg":0.0019,"pSD":0.00594,"pScaled":0.00087,"pRank":59,"nSamples":500,"individualID.1":9,"individualID.2":33,"transmission":false,"snpDist":15,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":-622,"infectionDiff":1107,"infectionDiffY":3.03288,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"009_036","label":"SNPs","pAvg":0.00222,"pSD":0.0068,"pScaled":0.0006,"pRank":58,"nSamples":500,"individualID.1":9,"individualID.2":36,"transmission":false,"snpDist":12,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":-860,"infectionDiff":715,"infectionDiffY":1.9589,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"009_037","label":"SNPs","pAvg":0.00543,"pSD":0.01662,"pScaled":0.00548,"pRank":35,"nSamples":500,"individualID.1":9,"individualID.2":37,"transmission":false,"snpDist":16,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":-473,"infectionDiff":237,"infectionDiffY":0.64932,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"009_040","label":"SNPs","pAvg":0.00177,"pSD":0.00562,"pScaled":0.00158,"pRank":60,"nSamples":500,"individualID.1":9,"individualID.2":40,"transmission":false,"snpDist":15,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":-838,"infectionDiff":971,"infectionDiffY":2.66027,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"009_045","label":"SNPs","pAvg":0.0084,"pSD":0.02597,"pScaled":0.00508,"pRank":29,"nSamples":500,"individualID.1":9,"individualID.2":45,"transmission":false,"snpDist":16,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":-464,"infectionDiff":482,"infectionDiffY":1.32055,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"1","snpClose":false} {"pairID":"009_047","label":"SNPs","pAvg":0.00555,"pSD":0.01728,"pScaled":0.0012,"pRank":42,"nSamples":500,"individualID.1":9,"individualID.2":47,"transmission":false,"snpDist":14,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":-1613,"infectionDiff":168,"infectionDiffY":0.46027,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"009_052","label":"SNPs","pAvg":0.00249,"pSD":0.00792,"pScaled":0.00093,"pRank":56,"nSamples":500,"individualID.1":9,"individualID.2":52,"transmission":false,"snpDist":14,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":6,"infectionDiff":987,"infectionDiffY":2.70411,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"009_053","label":"SNPs","pAvg":0.00413,"pSD":0.01285,"pScaled":0.00276,"pRank":34,"nSamples":500,"individualID.1":9,"individualID.2":53,"transmission":false,"snpDist":16,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":-1306,"infectionDiff":452,"infectionDiffY":1.23836,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"009_054","label":"SNPs","pAvg":0.00189,"pSD":0.00585,"pScaled":0.00049,"pRank":62,"nSamples":500,"individualID.1":9,"individualID.2":54,"transmission":false,"snpDist":16,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":-135,"infectionDiff":1376,"infectionDiffY":3.76986,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"009_055","label":"SNPs","pAvg":0.00455,"pSD":0.01427,"pScaled":0.0014,"pRank":37,"nSamples":500,"individualID.1":9,"individualID.2":55,"transmission":false,"snpDist":16,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":-1152,"infectionDiff":643,"infectionDiffY":1.76164,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"009_056","label":"SNPs","pAvg":0.00337,"pSD":0.01043,"pScaled":0.00081,"pRank":41,"nSamples":500,"individualID.1":9,"individualID.2":56,"transmission":false,"snpDist":16,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":-728,"infectionDiff":728,"infectionDiffY":1.99452,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"009_057","label":"SNPs","pAvg":0.00166,"pSD":0.0053,"pScaled":0.00033,"pRank":52,"nSamples":500,"individualID.1":9,"individualID.2":57,"transmission":false,"snpDist":17,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":-165,"infectionDiff":1378,"infectionDiffY":3.77534,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"009_058","label":"SNPs","pAvg":0.00252,"pSD":0.008,"pScaled":0.00248,"pRank":50,"nSamples":500,"individualID.1":9,"individualID.2":58,"transmission":false,"snpDist":18,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":120,"infectionDiff":1066,"infectionDiffY":2.92055,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"009_060","label":"SNPs","pAvg":0.0005,"pSD":0.00163,"pScaled":0.00024,"pRank":88,"nSamples":500,"individualID.1":9,"individualID.2":60,"transmission":false,"snpDist":16,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":161,"infectionDiff":1708,"infectionDiffY":4.67945,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"009_061","label":"SNPs","pAvg":0.00153,"pSD":0.0048,"pScaled":0.00291,"pRank":48,"nSamples":500,"individualID.1":9,"individualID.2":61,"transmission":false,"snpDist":15,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":-46,"infectionDiff":926,"infectionDiffY":2.53699,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"009_064","label":"SNPs","pAvg":0.00422,"pSD":0.01309,"pScaled":0.0016,"pRank":30,"nSamples":500,"individualID.1":9,"individualID.2":64,"transmission":false,"snpDist":17,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":-1096,"infectionDiff":607,"infectionDiffY":1.66301,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"009_065","label":"SNPs","pAvg":0.00202,"pSD":0.00621,"pScaled":0.00156,"pRank":34,"nSamples":500,"individualID.1":9,"individualID.2":65,"transmission":false,"snpDist":16,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":-1088,"infectionDiff":541,"infectionDiffY":1.48219,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"009_066","label":"SNPs","pAvg":0.00249,"pSD":0.0077,"pScaled":0.00066,"pRank":44,"nSamples":500,"individualID.1":9,"individualID.2":66,"transmission":false,"snpDist":17,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":-941,"infectionDiff":687,"infectionDiffY":1.88219,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"009_067","label":"SNPs","pAvg":0.00073,"pSD":0.00245,"pScaled":0.00018,"pRank":87,"nSamples":500,"individualID.1":9,"individualID.2":67,"transmission":false,"snpDist":18,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":180,"infectionDiff":1772,"infectionDiffY":4.85479,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"009_068","label":"SNPs","pAvg":0.00105,"pSD":0.00332,"pScaled":0.00023,"pRank":77,"nSamples":500,"individualID.1":9,"individualID.2":68,"transmission":false,"snpDist":13,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":-213,"infectionDiff":1424,"infectionDiffY":3.90137,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"009_069","label":"SNPs","pAvg":0.00112,"pSD":0.00357,"pScaled":0.00036,"pRank":79,"nSamples":500,"individualID.1":9,"individualID.2":69,"transmission":false,"snpDist":14,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":-169,"infectionDiff":1451,"infectionDiffY":3.97534,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"009_071","label":"SNPs","pAvg":0.00271,"pSD":0.00828,"pScaled":0.00276,"pRank":36,"nSamples":500,"individualID.1":9,"individualID.2":71,"transmission":false,"snpDist":19,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":-113,"infectionDiff":127,"infectionDiffY":0.34795,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"009_072","label":"SNPs","pAvg":0.00212,"pSD":0.00651,"pScaled":0.00064,"pRank":36,"nSamples":500,"individualID.1":9,"individualID.2":72,"transmission":false,"snpDist":15,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":-1673,"infectionDiff":46,"infectionDiffY":0.12603,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"009_073","label":"SNPs","pAvg":0.0006,"pSD":0.00193,"pScaled":0.00044,"pRank":53,"nSamples":500,"individualID.1":9,"individualID.2":73,"transmission":false,"snpDist":15,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":-592,"infectionDiff":797,"infectionDiffY":2.18356,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"009_074","label":"SNPs","pAvg":0.00086,"pSD":0.00268,"pScaled":0.00047,"pRank":43,"nSamples":500,"individualID.1":9,"individualID.2":74,"transmission":false,"snpDist":14,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":-751,"infectionDiff":178,"infectionDiffY":0.48767,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"009_075","label":"SNPs","pAvg":0.00018,"pSD":0.00058,"pScaled":0.00077,"pRank":78,"nSamples":500,"individualID.1":9,"individualID.2":75,"transmission":false,"snpDist":20,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-85,"infectionDiff":1751,"infectionDiffY":4.79726,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"009_076","label":"SNPs","pAvg":0.00364,"pSD":0.0113,"pScaled":0.00089,"pRank":67,"nSamples":500,"individualID.1":9,"individualID.2":76,"transmission":false,"snpDist":13,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":150,"infectionDiff":1424,"infectionDiffY":3.90137,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"009_077","label":"SNPs","pAvg":0.00159,"pSD":0.005,"pScaled":0.00035,"pRank":67,"nSamples":500,"individualID.1":9,"individualID.2":77,"transmission":false,"snpDist":12,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":-697,"infectionDiff":1139,"infectionDiffY":3.12055,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"009_078","label":"SNPs","pAvg":0.00109,"pSD":0.00342,"pScaled":0.00024,"pRank":85,"nSamples":500,"individualID.1":9,"individualID.2":78,"transmission":false,"snpDist":12,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":-7,"infectionDiff":1452,"infectionDiffY":3.97808,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"009_079","label":"SNPs","pAvg":0.00056,"pSD":0.00179,"pScaled":0.00028,"pRank":56,"nSamples":500,"individualID.1":9,"individualID.2":79,"transmission":false,"snpDist":17,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":-598,"infectionDiff":736,"infectionDiffY":2.01644,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"009_080","label":"SNPs","pAvg":0.00083,"pSD":0.00255,"pScaled":0.00604,"pRank":33,"nSamples":500,"individualID.1":9,"individualID.2":80,"transmission":false,"snpDist":17,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":-589,"infectionDiff":668,"infectionDiffY":1.83014,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"009_081","label":"SNPs","pAvg":0.00019,"pSD":0.00059,"pScaled":0.00005,"pRank":97,"nSamples":500,"individualID.1":9,"individualID.2":81,"transmission":false,"snpDist":12,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":127,"infectionDiff":1835,"infectionDiffY":5.0274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"009_082","label":"SNPs","pAvg":0.00045,"pSD":0.00139,"pScaled":0.0001,"pRank":96,"nSamples":500,"individualID.1":9,"individualID.2":82,"transmission":false,"snpDist":14,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":131,"infectionDiff":1912,"infectionDiffY":5.23836,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"009_083","label":"SNPs","pAvg":0.00108,"pSD":0.00346,"pScaled":0.00042,"pRank":72,"nSamples":500,"individualID.1":9,"individualID.2":83,"transmission":false,"snpDist":14,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":-94,"infectionDiff":1382,"infectionDiffY":3.7863,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"009_084","label":"SNPs","pAvg":0.00037,"pSD":0.00117,"pScaled":0.00019,"pRank":70,"nSamples":500,"individualID.1":9,"individualID.2":84,"transmission":false,"snpDist":19,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":150,"infectionDiff":1430,"infectionDiffY":3.91781,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"009_085","label":"SNPs","pAvg":0.00065,"pSD":0.00206,"pScaled":0.00022,"pRank":53,"nSamples":500,"individualID.1":9,"individualID.2":85,"transmission":false,"snpDist":17,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":-739,"infectionDiff":1095,"infectionDiffY":3,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"009_086","label":"SNPs","pAvg":0.00243,"pSD":0.00758,"pScaled":0.00077,"pRank":37,"nSamples":500,"individualID.1":9,"individualID.2":86,"transmission":false,"snpDist":14,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":-901,"infectionDiff":723,"infectionDiffY":1.98082,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"009_087","label":"SNPs","pAvg":0.00115,"pSD":0.0037,"pScaled":0.00094,"pRank":41,"nSamples":500,"individualID.1":9,"individualID.2":87,"transmission":false,"snpDist":16,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":-366,"infectionDiff":1262,"infectionDiffY":3.45753,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"009_088","label":"SNPs","pAvg":0.00052,"pSD":0.00173,"pScaled":0.0001,"pRank":88,"nSamples":500,"individualID.1":9,"individualID.2":88,"transmission":false,"snpDist":13,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-256,"infectionDiff":1597,"infectionDiffY":4.37534,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"009_089","label":"SNPs","pAvg":0.00042,"pSD":0.00135,"pScaled":0.00014,"pRank":72,"nSamples":500,"individualID.1":9,"individualID.2":89,"transmission":false,"snpDist":18,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":36,"infectionDiff":1434,"infectionDiffY":3.92877,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"009_090","label":"SNPs","pAvg":0.00019,"pSD":0.00062,"pScaled":0.00005,"pRank":87,"nSamples":500,"individualID.1":9,"individualID.2":90,"transmission":false,"snpDist":19,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":106,"infectionDiff":1660,"infectionDiffY":4.54795,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"009_091","label":"SNPs","pAvg":0.00113,"pSD":0.00363,"pScaled":0.00057,"pRank":46,"nSamples":500,"individualID.1":9,"individualID.2":91,"transmission":false,"snpDist":18,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":127,"infectionDiff":1251,"infectionDiffY":3.4274,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"009_092","label":"SNPs","pAvg":0.00036,"pSD":0.00116,"pScaled":0.00015,"pRank":69,"nSamples":500,"individualID.1":9,"individualID.2":92,"transmission":false,"snpDist":18,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":174,"infectionDiff":1402,"infectionDiffY":3.8411,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"009_093","label":"SNPs","pAvg":0.00021,"pSD":0.0007,"pScaled":0.00006,"pRank":86,"nSamples":500,"individualID.1":9,"individualID.2":93,"transmission":false,"snpDist":19,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":11,"infectionDiff":1628,"infectionDiffY":4.46027,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"009_094","label":"SNPs","pAvg":0.00048,"pSD":0.00147,"pScaled":0.00016,"pRank":83,"nSamples":500,"individualID.1":9,"individualID.2":94,"transmission":false,"snpDist":18,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":57,"infectionDiff":1899,"infectionDiffY":5.20274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"009_095","label":"SNPs","pAvg":0.00117,"pSD":0.00373,"pScaled":0.0006,"pRank":41,"nSamples":500,"individualID.1":9,"individualID.2":95,"transmission":false,"snpDist":18,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":-360,"infectionDiff":1331,"infectionDiffY":3.64658,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"009_096","label":"SNPs","pAvg":0.00047,"pSD":0.00155,"pScaled":0.00017,"pRank":75,"nSamples":500,"individualID.1":9,"individualID.2":96,"transmission":false,"snpDist":16,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-266,"infectionDiff":1563,"infectionDiffY":4.28219,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"009_097","label":"SNPs","pAvg":0.00051,"pSD":0.00165,"pScaled":0.00011,"pRank":91,"nSamples":500,"individualID.1":9,"individualID.2":97,"transmission":false,"snpDist":18,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":-23,"infectionDiff":1720,"infectionDiffY":4.71233,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"009_098","label":"SNPs","pAvg":0.00018,"pSD":0.00061,"pScaled":0.00005,"pRank":85,"nSamples":500,"individualID.1":9,"individualID.2":98,"transmission":false,"snpDist":18,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":-204,"infectionDiff":1492,"infectionDiffY":4.08767,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"009_099","label":"SNPs","pAvg":0.00088,"pSD":0.00278,"pScaled":0.0003,"pRank":60,"nSamples":500,"individualID.1":9,"individualID.2":99,"transmission":false,"snpDist":15,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":-221,"infectionDiff":1356,"infectionDiffY":3.71507,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"009_100","label":"SNPs","pAvg":0.00129,"pSD":0.00427,"pScaled":0.00038,"pRank":80,"nSamples":500,"individualID.1":9,"individualID.2":100,"transmission":false,"snpDist":15,"infectionDate.1":"1994-05-05 15:46:59","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-06-27 11:49:38","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":-22,"infectionDiff":1734,"infectionDiffY":4.75068,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"010_006","label":"SNPs","pAvg":0.02795,"pSD":0.00572,"pScaled":0.01785,"pRank":9,"nSamples":50,"individualID.1":10,"individualID.2":6,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":25,"infectionDiff":276,"infectionDiffY":0.75616,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"010_009","label":"SNPs","pAvg":0.00294,"pSD":0.00916,"pScaled":0.01309,"pRank":22,"nSamples":500,"individualID.1":10,"individualID.2":9,"transmission":false,"snpDist":11,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":2549,"infectionDiff":959,"infectionDiffY":2.6274,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"010_014","label":"SNPs","pAvg":0.04091,"pSD":0.00934,"pScaled":0.02248,"pRank":11,"nSamples":50,"individualID.1":10,"individualID.2":14,"transmission":true,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":580,"infectionDiff":537,"infectionDiffY":1.47123,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"010_017","label":"SNPs","pAvg":0.05422,"pSD":0.01108,"pScaled":0.07559,"pRank":6,"nSamples":500,"individualID.1":10,"individualID.2":17,"transmission":false,"snpDist":7,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":1718,"infectionDiff":309,"infectionDiffY":0.84658,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"010_018","label":"SNPs","pAvg":0.04857,"pSD":0.01426,"pScaled":0.05505,"pRank":4,"nSamples":500,"individualID.1":10,"individualID.2":18,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":472,"infectionDiff":733,"infectionDiffY":2.00822,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"010_021","label":"SNPs","pAvg":0.03999,"pSD":0.00979,"pScaled":0.03818,"pRank":11,"nSamples":500,"individualID.1":10,"individualID.2":21,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":1917,"infectionDiff":730,"infectionDiffY":2,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"010_023","label":"SNPs","pAvg":0.00807,"pSD":0.00213,"pScaled":0.00359,"pRank":50,"nSamples":50,"individualID.1":10,"individualID.2":23,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":2706,"infectionDiff":2498,"infectionDiffY":6.84384,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"010_026","label":"SNPs","pAvg":0.71719,"pSD":0.45023,"pScaled":0.25192,"pRank":3,"nSamples":176,"individualID.1":10,"individualID.2":26,"transmission":false,"snpDist":2,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":2310,"infectionDiff":1795,"infectionDiffY":4.91781,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"010_027","label":"SNPs","pAvg":0.00938,"pSD":0.00263,"pScaled":0.00335,"pRank":40,"nSamples":50,"individualID.1":10,"individualID.2":27,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":2483,"infectionDiff":2384,"infectionDiffY":6.53151,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"010_028","label":"SNPs","pAvg":0.70559,"pSD":0.45172,"pScaled":0.19709,"pRank":3,"nSamples":167,"individualID.1":10,"individualID.2":28,"transmission":false,"snpDist":1,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":1699,"infectionDiff":1209,"infectionDiffY":3.31233,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"1","snpClose":true} {"pairID":"010_030","label":"SNPs","pAvg":0.03089,"pSD":0.00656,"pScaled":0.0216,"pRank":7,"nSamples":50,"individualID.1":10,"individualID.2":30,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":-50,"infectionDiff":215,"infectionDiffY":0.58904,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"010_032","label":"SNPs","pAvg":0.10073,"pSD":0.02004,"pScaled":0.06867,"pRank":2,"nSamples":50,"individualID.1":10,"individualID.2":32,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":1380,"infectionDiff":162,"infectionDiffY":0.44384,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"010_033","label":"SNPs","pAvg":0.0044,"pSD":0.0009,"pScaled":0.00201,"pRank":41,"nSamples":50,"individualID.1":10,"individualID.2":33,"transmission":false,"snpDist":8,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":1927,"infectionDiff":2066,"infectionDiffY":5.66027,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"010_035","label":"SNPs","pAvg":0.04888,"pSD":0.01445,"pScaled":0.01271,"pRank":10,"nSamples":50,"individualID.1":10,"individualID.2":35,"transmission":false,"snpDist":5,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":1889,"infectionDiff":864,"infectionDiffY":2.36712,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"010_036","label":"SNPs","pAvg":0.00883,"pSD":0.00395,"pScaled":0.00239,"pRank":49,"nSamples":50,"individualID.1":10,"individualID.2":36,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":1688,"infectionDiff":1674,"infectionDiffY":4.5863,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"010_037","label":"SNPs","pAvg":0.01044,"pSD":0.00358,"pScaled":0.01053,"pRank":25,"nSamples":500,"individualID.1":10,"individualID.2":37,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":2076,"infectionDiff":1196,"infectionDiffY":3.27671,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"010_038","label":"SNPs","pAvg":0.0177,"pSD":0.00575,"pScaled":0.02101,"pRank":15,"nSamples":500,"individualID.1":10,"individualID.2":38,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":1137,"infectionDiff":841,"infectionDiffY":2.30411,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"010_039","label":"SNPs","pAvg":0.00308,"pSD":0.00945,"pScaled":0.00665,"pRank":22,"nSamples":500,"individualID.1":10,"individualID.2":39,"transmission":false,"snpDist":11,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":1303,"infectionDiff":287,"infectionDiffY":0.7863,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"010_040","label":"SNPs","pAvg":0.00769,"pSD":0.00215,"pScaled":0.00688,"pRank":43,"nSamples":500,"individualID.1":10,"individualID.2":40,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":1711,"infectionDiff":1930,"infectionDiffY":5.28767,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"010_041","label":"SNPs","pAvg":0.02681,"pSD":0.00545,"pScaled":0.06959,"pRank":5,"nSamples":500,"individualID.1":10,"individualID.2":41,"transmission":false,"snpDist":9,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":2561,"infectionDiff":131,"infectionDiffY":0.3589,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"010_043","label":"SNPs","pAvg":0.06943,"pSD":0.01542,"pScaled":0.0937,"pRank":2,"nSamples":500,"individualID.1":10,"individualID.2":43,"transmission":false,"snpDist":9,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":2686,"infectionDiff":549,"infectionDiffY":1.50411,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"010_044","label":"SNPs","pAvg":0.03616,"pSD":0.00663,"pScaled":0.00973,"pRank":11,"nSamples":50,"individualID.1":10,"individualID.2":44,"transmission":false,"snpDist":6,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":306,"infectionDiff":451,"infectionDiffY":1.23562,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"010_045","label":"SNPs","pAvg":0.02004,"pSD":0.00641,"pScaled":0.01213,"pRank":15,"nSamples":50,"individualID.1":10,"individualID.2":45,"transmission":false,"snpDist":9,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":2084,"infectionDiff":1441,"infectionDiffY":3.94795,"timeCat":"4","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"010_046","label":"SNPs","pAvg":0.02151,"pSD":0.004,"pScaled":0.01244,"pRank":13,"nSamples":50,"individualID.1":10,"individualID.2":46,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":989,"infectionDiff":396,"infectionDiffY":1.08493,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"010_047","label":"SNPs","pAvg":0.03901,"pSD":0.00773,"pScaled":0.00841,"pRank":17,"nSamples":50,"individualID.1":10,"individualID.2":47,"transmission":false,"snpDist":7,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":935,"infectionDiff":1127,"infectionDiffY":3.08767,"timeCat":"4","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"010_048","label":"SNPs","pAvg":0.05082,"pSD":0.01314,"pScaled":0.0224,"pRank":6,"nSamples":50,"individualID.1":10,"individualID.2":48,"transmission":false,"snpDist":8,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":1218,"infectionDiff":661,"infectionDiffY":1.81096,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"010_049","label":"SNPs","pAvg":0.04615,"pSD":0.01001,"pScaled":0.03022,"pRank":7,"nSamples":50,"individualID.1":10,"individualID.2":49,"transmission":false,"snpDist":8,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":953,"infectionDiff":279,"infectionDiffY":0.76438,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"010_051","label":"SNPs","pAvg":0.05083,"pSD":0.01399,"pScaled":0.02407,"pRank":8,"nSamples":50,"individualID.1":10,"individualID.2":51,"transmission":false,"snpDist":6,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":722,"infectionDiff":918,"infectionDiffY":2.51507,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"010_052","label":"SNPs","pAvg":0.00522,"pSD":0.00125,"pScaled":0.00196,"pRank":46,"nSamples":50,"individualID.1":10,"individualID.2":52,"transmission":false,"snpDist":7,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":2555,"infectionDiff":1946,"infectionDiffY":5.33151,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"010_053","label":"SNPs","pAvg":0.01039,"pSD":0.00382,"pScaled":0.00694,"pRank":17,"nSamples":50,"individualID.1":10,"individualID.2":53,"transmission":false,"snpDist":9,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":1242,"infectionDiff":1411,"infectionDiffY":3.86575,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"010_054","label":"SNPs","pAvg":0.00467,"pSD":0.00105,"pScaled":0.00122,"pRank":44,"nSamples":50,"individualID.1":10,"individualID.2":54,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":2414,"infectionDiff":2335,"infectionDiffY":6.39726,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"010_055","label":"SNPs","pAvg":0.01513,"pSD":0.00694,"pScaled":0.00465,"pRank":15,"nSamples":50,"individualID.1":10,"individualID.2":55,"transmission":false,"snpDist":9,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":1397,"infectionDiff":1602,"infectionDiffY":4.38904,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"010_056","label":"SNPs","pAvg":0.00504,"pSD":0.00207,"pScaled":0.0012,"pRank":33,"nSamples":50,"individualID.1":10,"individualID.2":56,"transmission":false,"snpDist":9,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":1821,"infectionDiff":1687,"infectionDiffY":4.62192,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"010_057","label":"SNPs","pAvg":0.0054,"pSD":0.00133,"pScaled":0.00108,"pRank":37,"nSamples":50,"individualID.1":10,"individualID.2":57,"transmission":false,"snpDist":10,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":2384,"infectionDiff":2337,"infectionDiffY":6.40274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"010_058","label":"SNPs","pAvg":0.00524,"pSD":0.00131,"pScaled":0.00517,"pRank":40,"nSamples":500,"individualID.1":10,"individualID.2":58,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":2669,"infectionDiff":2026,"infectionDiffY":5.55068,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"010_059","label":"SNPs","pAvg":0.07965,"pSD":0.01906,"pScaled":0.11449,"pRank":2,"nSamples":500,"individualID.1":10,"individualID.2":59,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":2048,"infectionDiff":489,"infectionDiffY":1.33973,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"010_060","label":"SNPs","pAvg":0.00782,"pSD":0.00218,"pScaled":0.00379,"pRank":46,"nSamples":50,"individualID.1":10,"individualID.2":60,"transmission":false,"snpDist":9,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":2710,"infectionDiff":2667,"infectionDiffY":7.30685,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"010_061","label":"SNPs","pAvg":0.00187,"pSD":0.00052,"pScaled":0.00355,"pRank":37,"nSamples":500,"individualID.1":10,"individualID.2":61,"transmission":false,"snpDist":8,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":2503,"infectionDiff":1885,"infectionDiffY":5.16438,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"010_062","label":"SNPs","pAvg":0.06058,"pSD":0.01602,"pScaled":0.01603,"pRank":9,"nSamples":50,"individualID.1":10,"individualID.2":62,"transmission":false,"snpDist":7,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":1238,"infectionDiff":790,"infectionDiffY":2.16438,"timeCat":"3","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"010_063","label":"SNPs","pAvg":0.02463,"pSD":0.00648,"pScaled":0.01185,"pRank":8,"nSamples":50,"individualID.1":10,"individualID.2":63,"transmission":false,"snpDist":8,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":670,"infectionDiff":584,"infectionDiffY":1.6,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"010_064","label":"SNPs","pAvg":0.00473,"pSD":0.00212,"pScaled":0.0018,"pRank":29,"nSamples":50,"individualID.1":10,"individualID.2":64,"transmission":false,"snpDist":10,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":1453,"infectionDiff":1566,"infectionDiffY":4.29041,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"010_065","label":"SNPs","pAvg":0.00188,"pSD":0.00088,"pScaled":0.00145,"pRank":36,"nSamples":50,"individualID.1":10,"individualID.2":65,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":1461,"infectionDiff":1500,"infectionDiffY":4.10959,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"010_066","label":"SNPs","pAvg":0.00818,"pSD":0.00364,"pScaled":0.00216,"pRank":28,"nSamples":50,"individualID.1":10,"individualID.2":66,"transmission":false,"snpDist":10,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":1608,"infectionDiff":1646,"infectionDiffY":4.50959,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"010_067","label":"SNPs","pAvg":0.00532,"pSD":0.00127,"pScaled":0.00134,"pRank":54,"nSamples":50,"individualID.1":10,"individualID.2":67,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":2729,"infectionDiff":2731,"infectionDiffY":7.48219,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"010_068","label":"SNPs","pAvg":0.00913,"pSD":0.00239,"pScaled":0.002,"pRank":42,"nSamples":50,"individualID.1":10,"individualID.2":68,"transmission":false,"snpDist":6,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":2336,"infectionDiff":2383,"infectionDiffY":6.52877,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"010_069","label":"SNPs","pAvg":0.00148,"pSD":0.00045,"pScaled":0.00047,"pRank":68,"nSamples":50,"individualID.1":10,"individualID.2":69,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":2380,"infectionDiff":2410,"infectionDiffY":6.60274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"010_070","label":"SNPs","pAvg":0.02956,"pSD":0.00919,"pScaled":0.00915,"pRank":18,"nSamples":50,"individualID.1":10,"individualID.2":70,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":917,"infectionDiff":828,"infectionDiffY":2.26849,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"010_071","label":"SNPs","pAvg":0.02944,"pSD":0.009,"pScaled":0.02996,"pRank":15,"nSamples":500,"individualID.1":10,"individualID.2":71,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":2435,"infectionDiff":1086,"infectionDiffY":2.97534,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"010_072","label":"SNPs","pAvg":0.0297,"pSD":0.00829,"pScaled":0.00904,"pRank":10,"nSamples":50,"individualID.1":10,"individualID.2":72,"transmission":false,"snpDist":8,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":876,"infectionDiff":1005,"infectionDiffY":2.75342,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"010_073","label":"SNPs","pAvg":0.00168,"pSD":0.00076,"pScaled":0.00123,"pRank":43,"nSamples":50,"individualID.1":10,"individualID.2":73,"transmission":false,"snpDist":8,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":1957,"infectionDiff":1756,"infectionDiffY":4.81096,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"010_074","label":"SNPs","pAvg":0.00389,"pSD":0.00127,"pScaled":0.00213,"pRank":21,"nSamples":50,"individualID.1":10,"individualID.2":74,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":1797,"infectionDiff":1137,"infectionDiffY":3.11507,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"010_075","label":"SNPs","pAvg":0.00017,"pSD":0.00053,"pScaled":0.00073,"pRank":80,"nSamples":500,"individualID.1":10,"individualID.2":75,"transmission":false,"snpDist":13,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":2464,"infectionDiff":2710,"infectionDiffY":7.42466,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"010_076","label":"SNPs","pAvg":0.00842,"pSD":0.0017,"pScaled":0.00206,"pRank":43,"nSamples":50,"individualID.1":10,"individualID.2":76,"transmission":false,"snpDist":6,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":2698,"infectionDiff":2383,"infectionDiffY":6.52877,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"010_077","label":"SNPs","pAvg":0.00493,"pSD":0.00129,"pScaled":0.00109,"pRank":51,"nSamples":50,"individualID.1":10,"individualID.2":77,"transmission":false,"snpDist":5,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":1851,"infectionDiff":2098,"infectionDiffY":5.74795,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"010_078","label":"SNPs","pAvg":0.00739,"pSD":0.00206,"pScaled":0.00164,"pRank":63,"nSamples":50,"individualID.1":10,"individualID.2":78,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":2542,"infectionDiff":2411,"infectionDiffY":6.60548,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"010_079","label":"SNPs","pAvg":0.00513,"pSD":0.00213,"pScaled":0.00258,"pRank":23,"nSamples":50,"individualID.1":10,"individualID.2":79,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":1951,"infectionDiff":1695,"infectionDiffY":4.64384,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"010_080","label":"SNPs","pAvg":0.00194,"pSD":0.00093,"pScaled":0.01415,"pRank":19,"nSamples":500,"individualID.1":10,"individualID.2":80,"transmission":false,"snpDist":10,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":1959,"infectionDiff":1627,"infectionDiffY":4.45753,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"010_081","label":"SNPs","pAvg":0.00163,"pSD":0.00054,"pScaled":0.0004,"pRank":86,"nSamples":50,"individualID.1":10,"individualID.2":81,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":2675,"infectionDiff":2794,"infectionDiffY":7.65479,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"010_082","label":"SNPs","pAvg":0.00868,"pSD":0.00217,"pScaled":0.00189,"pRank":37,"nSamples":50,"individualID.1":10,"individualID.2":82,"transmission":false,"snpDist":7,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":2679,"infectionDiff":2871,"infectionDiffY":7.86575,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"010_083","label":"SNPs","pAvg":0.00924,"pSD":0.00239,"pScaled":0.0036,"pRank":39,"nSamples":50,"individualID.1":10,"individualID.2":83,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":2455,"infectionDiff":2341,"infectionDiffY":6.4137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"010_084","label":"SNPs","pAvg":0.00055,"pSD":0.00171,"pScaled":0.00028,"pRank":54,"nSamples":500,"individualID.1":10,"individualID.2":84,"transmission":false,"snpDist":12,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":2698,"infectionDiff":2389,"infectionDiffY":6.54521,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"010_085","label":"SNPs","pAvg":0.00439,"pSD":0.00104,"pScaled":0.0015,"pRank":17,"nSamples":50,"individualID.1":10,"individualID.2":85,"transmission":false,"snpDist":10,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":1810,"infectionDiff":2054,"infectionDiffY":5.6274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"010_086","label":"SNPs","pAvg":0.00147,"pSD":0.00077,"pScaled":0.00047,"pRank":47,"nSamples":50,"individualID.1":10,"individualID.2":86,"transmission":false,"snpDist":7,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":1648,"infectionDiff":1682,"infectionDiffY":4.60822,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"010_087","label":"SNPs","pAvg":0.00022,"pSD":0.0007,"pScaled":0.00018,"pRank":62,"nSamples":500,"individualID.1":10,"individualID.2":87,"transmission":false,"snpDist":11,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":2183,"infectionDiff":2221,"infectionDiffY":6.08493,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"010_088","label":"SNPs","pAvg":0.00766,"pSD":0.00224,"pScaled":0.00148,"pRank":43,"nSamples":50,"individualID.1":10,"individualID.2":88,"transmission":false,"snpDist":6,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":2293,"infectionDiff":2556,"infectionDiffY":7.00274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"010_089","label":"SNPs","pAvg":0.00047,"pSD":0.00145,"pScaled":0.00015,"pRank":67,"nSamples":500,"individualID.1":10,"individualID.2":89,"transmission":false,"snpDist":11,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":2584,"infectionDiff":2393,"infectionDiffY":6.55616,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"010_090","label":"SNPs","pAvg":0.00471,"pSD":0.00093,"pScaled":0.00122,"pRank":28,"nSamples":50,"individualID.1":10,"individualID.2":90,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":2655,"infectionDiff":2619,"infectionDiffY":7.17534,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"010_091","label":"SNPs","pAvg":0.00079,"pSD":0.00246,"pScaled":0.0004,"pRank":56,"nSamples":500,"individualID.1":10,"individualID.2":91,"transmission":false,"snpDist":11,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":2676,"infectionDiff":2210,"infectionDiffY":6.05479,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"010_092","label":"SNPs","pAvg":0.00054,"pSD":0.00167,"pScaled":0.00022,"pRank":56,"nSamples":500,"individualID.1":10,"individualID.2":92,"transmission":false,"snpDist":11,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":2723,"infectionDiff":2361,"infectionDiffY":6.46849,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"010_093","label":"SNPs","pAvg":0.00051,"pSD":0.00158,"pScaled":0.00014,"pRank":74,"nSamples":500,"individualID.1":10,"individualID.2":93,"transmission":false,"snpDist":12,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":2560,"infectionDiff":2587,"infectionDiffY":7.08767,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"010_094","label":"SNPs","pAvg":0.00201,"pSD":0.00053,"pScaled":0.00066,"pRank":55,"nSamples":50,"individualID.1":10,"individualID.2":94,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":2606,"infectionDiff":2859,"infectionDiffY":7.83288,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"010_095","label":"SNPs","pAvg":0.00022,"pSD":0.0007,"pScaled":0.00011,"pRank":63,"nSamples":500,"individualID.1":10,"individualID.2":95,"transmission":false,"snpDist":11,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":2188,"infectionDiff":2290,"infectionDiffY":6.27397,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"010_096","label":"SNPs","pAvg":0.00198,"pSD":0.00056,"pScaled":0.00069,"pRank":43,"nSamples":50,"individualID.1":10,"individualID.2":96,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":2283,"infectionDiff":2522,"infectionDiffY":6.90959,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"010_097","label":"SNPs","pAvg":0.00837,"pSD":0.00217,"pScaled":0.00188,"pRank":29,"nSamples":50,"individualID.1":10,"individualID.2":97,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":2526,"infectionDiff":2679,"infectionDiffY":7.33973,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"010_098","label":"SNPs","pAvg":0.00045,"pSD":0.00138,"pScaled":0.00013,"pRank":74,"nSamples":500,"individualID.1":10,"individualID.2":98,"transmission":false,"snpDist":11,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":2345,"infectionDiff":2451,"infectionDiffY":6.71507,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"010_099","label":"SNPs","pAvg":0.00178,"pSD":0.00053,"pScaled":0.00061,"pRank":46,"nSamples":50,"individualID.1":10,"individualID.2":99,"transmission":false,"snpDist":8,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":2328,"infectionDiff":2315,"infectionDiffY":6.34247,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"010_100","label":"SNPs","pAvg":0.01056,"pSD":0.00227,"pScaled":0.00311,"pRank":36,"nSamples":50,"individualID.1":10,"individualID.2":100,"transmission":false,"infectionDate.1":"1991-09-19 13:56:02","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1992-07-04 18:06:43","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":2527,"infectionDiff":2693,"infectionDiffY":7.37808,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"011_003","label":"SNPs","pAvg":0.03117,"pSD":0.00867,"pScaled":0.09836,"pRank":4,"nSamples":500,"individualID.1":11,"individualID.2":3,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1990-12-11 19:24:08","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1998-10-30 22:42:57","sampleDiff":2562,"infectionDiff":968,"infectionDiffY":2.65205,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"011_006","label":"SNPs","pAvg":0.00977,"pSD":0.00389,"pScaled":0.00624,"pRank":19,"nSamples":50,"individualID.1":11,"individualID.2":6,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":279,"infectionDiff":1526,"infectionDiffY":4.18082,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"011_009","label":"SNPs","pAvg":0.00051,"pSD":0.0016,"pScaled":0.00229,"pRank":41,"nSamples":500,"individualID.1":11,"individualID.2":9,"transmission":false,"snpDist":11,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":2802,"infectionDiff":2209,"infectionDiffY":6.05205,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"011_010","label":"SNPs","pAvg":0.01655,"pSD":0.00533,"pScaled":0.01199,"pRank":14,"nSamples":50,"individualID.1":11,"individualID.2":10,"transmission":false,"snpDist":4,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":253,"infectionDiff":1249,"infectionDiffY":3.42192,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"011_014","label":"SNPs","pAvg":0.01436,"pSD":0.00621,"pScaled":0.00789,"pRank":22,"nSamples":50,"individualID.1":11,"individualID.2":14,"transmission":false,"snpDist":4,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":833,"infectionDiff":1786,"infectionDiffY":4.89315,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"011_015","label":"SNPs","pAvg":0.08128,"pSD":0.01491,"pScaled":0.03187,"pRank":4,"nSamples":50,"individualID.1":11,"individualID.2":15,"transmission":true,"snpDist":4,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1988-08-20 08:24:18","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1992-08-15 08:05:31","sampleDiff":295,"infectionDiff":124,"infectionDiffY":0.33973,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"011_016","label":"SNPs","pAvg":0.03088,"pSD":0.00639,"pScaled":0.07696,"pRank":7,"nSamples":500,"individualID.1":11,"individualID.2":16,"transmission":true,"snpDist":6,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1989-04-18 04:17:39","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1995-12-16 04:24:53","sampleDiff":1513,"infectionDiff":365,"infectionDiffY":1,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"011_017","label":"SNPs","pAvg":0.01533,"pSD":0.00706,"pScaled":0.02138,"pRank":12,"nSamples":500,"individualID.1":11,"individualID.2":17,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":1971,"infectionDiff":1558,"infectionDiffY":4.26849,"timeCat":"5","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"011_018","label":"SNPs","pAvg":0.00885,"pSD":0.00232,"pScaled":0.01003,"pRank":26,"nSamples":500,"individualID.1":11,"individualID.2":18,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":726,"infectionDiff":1983,"infectionDiffY":5.43288,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"011_021","label":"SNPs","pAvg":0.01472,"pSD":0.00346,"pScaled":0.01406,"pRank":23,"nSamples":500,"individualID.1":11,"individualID.2":21,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":2170,"infectionDiff":1980,"infectionDiffY":5.42466,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"011_022","label":"SNPs","pAvg":0.07965,"pSD":0.01906,"pScaled":0.15538,"pRank":2,"nSamples":500,"individualID.1":11,"individualID.2":22,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1989-06-06 04:07:23","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1991-10-22 14:29:51","sampleDiff":-3,"infectionDiff":414,"infectionDiffY":1.13425,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"011_023","label":"SNPs","pAvg":0.01825,"pSD":0.00414,"pScaled":0.00812,"pRank":20,"nSamples":50,"individualID.1":11,"individualID.2":23,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":2959,"infectionDiff":3748,"infectionDiffY":10.26849,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"011_024","label":"SNPs","pAvg":0.03362,"pSD":0.01118,"pScaled":0.02598,"pRank":6,"nSamples":50,"individualID.1":11,"individualID.2":24,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1991-02-07 21:59:42","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1992-10-05 23:05:30","sampleDiff":346,"infectionDiff":1026,"infectionDiffY":2.81096,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"011_025","label":"SNPs","pAvg":0.04121,"pSD":0.008,"pScaled":0.00935,"pRank":12,"nSamples":50,"individualID.1":11,"individualID.2":25,"transmission":false,"snpDist":3,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1989-07-09 14:49:21","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1990-01-24 23:05:50","sampleDiff":-639,"infectionDiff":448,"infectionDiffY":1.2274,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"011_026","label":"SNPs","pAvg":0.00846,"pSD":0.00155,"pScaled":0.00297,"pRank":26,"nSamples":50,"individualID.1":11,"individualID.2":26,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":2563,"infectionDiff":3044,"infectionDiffY":8.33973,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"011_027","label":"SNPs","pAvg":0.01519,"pSD":0.00354,"pScaled":0.00542,"pRank":24,"nSamples":50,"individualID.1":11,"individualID.2":27,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":2736,"infectionDiff":3634,"infectionDiffY":9.95616,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"011_028","label":"SNPs","pAvg":0.01851,"pSD":0.00463,"pScaled":0.00517,"pRank":29,"nSamples":50,"individualID.1":11,"individualID.2":28,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":1952,"infectionDiff":2458,"infectionDiffY":6.73425,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"011_029","label":"SNPs","pAvg":0.05554,"pSD":0.01559,"pScaled":0.13709,"pRank":2,"nSamples":500,"individualID.1":11,"individualID.2":29,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1990-12-27 23:28:20","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1992-03-01 23:20:54","sampleDiff":128,"infectionDiff":984,"infectionDiffY":2.69589,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"011_030","label":"SNPs","pAvg":0.00794,"pSD":0.00329,"pScaled":0.00555,"pRank":20,"nSamples":50,"individualID.1":11,"individualID.2":30,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":203,"infectionDiff":1465,"infectionDiffY":4.0137,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"011_031","label":"SNPs","pAvg":0.05882,"pSD":0.01537,"pScaled":0.09703,"pRank":4,"nSamples":500,"individualID.1":11,"individualID.2":31,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1991-01-03 16:49:07","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1991-07-17 03:37:35","sampleDiff":-100,"infectionDiff":991,"infectionDiffY":2.71507,"timeCat":"3","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"011_032","label":"SNPs","pAvg":0.01664,"pSD":0.00474,"pScaled":0.01135,"pRank":14,"nSamples":50,"individualID.1":11,"individualID.2":32,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":1633,"infectionDiff":1411,"infectionDiffY":3.86575,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"011_033","label":"SNPs","pAvg":0.00507,"pSD":0.00129,"pScaled":0.00231,"pRank":34,"nSamples":50,"individualID.1":11,"individualID.2":33,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":2180,"infectionDiff":3316,"infectionDiffY":9.08493,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"011_034","label":"SNPs","pAvg":0.03387,"pSD":0.01072,"pScaled":0.11381,"pRank":4,"nSamples":500,"individualID.1":11,"individualID.2":34,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":1202,"infectionDiff":1030,"infectionDiffY":2.82192,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"011_035","label":"SNPs","pAvg":0.00868,"pSD":0.0023,"pScaled":0.00226,"pRank":35,"nSamples":50,"individualID.1":11,"individualID.2":35,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":2143,"infectionDiff":2113,"infectionDiffY":5.78904,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"011_036","label":"SNPs","pAvg":0.01464,"pSD":0.0036,"pScaled":0.00396,"pRank":36,"nSamples":50,"individualID.1":11,"individualID.2":36,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":1942,"infectionDiff":2924,"infectionDiffY":8.01096,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"011_037","label":"SNPs","pAvg":0.01086,"pSD":0.00276,"pScaled":0.01095,"pRank":23,"nSamples":500,"individualID.1":11,"individualID.2":37,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":2329,"infectionDiff":2446,"infectionDiffY":6.70137,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"011_038","label":"SNPs","pAvg":0.0087,"pSD":0.00172,"pScaled":0.01033,"pRank":22,"nSamples":500,"individualID.1":11,"individualID.2":38,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":1391,"infectionDiff":2090,"infectionDiffY":5.72603,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"011_039","label":"SNPs","pAvg":0.00082,"pSD":0.00263,"pScaled":0.00176,"pRank":26,"nSamples":500,"individualID.1":11,"individualID.2":39,"transmission":false,"snpDist":11,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":1556,"infectionDiff":1536,"infectionDiffY":4.20822,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"011_040","label":"SNPs","pAvg":0.01699,"pSD":0.004,"pScaled":0.01519,"pRank":20,"nSamples":500,"individualID.1":11,"individualID.2":40,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":1964,"infectionDiff":3180,"infectionDiffY":8.71233,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"011_041","label":"SNPs","pAvg":0.02137,"pSD":0.00592,"pScaled":0.05548,"pRank":7,"nSamples":500,"individualID.1":11,"individualID.2":41,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":2814,"infectionDiff":1380,"infectionDiffY":3.78082,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"011_042","label":"SNPs","pAvg":0.05404,"pSD":0.01569,"pScaled":0.01995,"pRank":6,"nSamples":50,"individualID.1":11,"individualID.2":42,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":217,"infectionDiff":1032,"infectionDiffY":2.8274,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"011_043","label":"SNPs","pAvg":0.00909,"pSD":0.00409,"pScaled":0.01227,"pRank":22,"nSamples":500,"individualID.1":11,"individualID.2":43,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":2939,"infectionDiff":1799,"infectionDiffY":4.92877,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"011_044","label":"SNPs","pAvg":0.00875,"pSD":0.00375,"pScaled":0.00235,"pRank":18,"nSamples":50,"individualID.1":11,"individualID.2":44,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":559,"infectionDiff":1700,"infectionDiffY":4.65753,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"011_045","label":"SNPs","pAvg":0.00598,"pSD":0.00142,"pScaled":0.00362,"pRank":34,"nSamples":50,"individualID.1":11,"individualID.2":45,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":2338,"infectionDiff":2690,"infectionDiffY":7.36986,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"011_046","label":"SNPs","pAvg":0.0103,"pSD":0.00427,"pScaled":0.00596,"pRank":20,"nSamples":50,"individualID.1":11,"individualID.2":46,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":1242,"infectionDiff":1645,"infectionDiffY":4.50685,"timeCat":"5","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"011_047","label":"SNPs","pAvg":0.00845,"pSD":0.00225,"pScaled":0.00182,"pRank":38,"nSamples":50,"individualID.1":11,"individualID.2":47,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":1189,"infectionDiff":2376,"infectionDiffY":6.50959,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"011_048","label":"SNPs","pAvg":0.00463,"pSD":0.00106,"pScaled":0.00204,"pRank":30,"nSamples":50,"individualID.1":11,"individualID.2":48,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":1471,"infectionDiff":1910,"infectionDiffY":5.23288,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"011_049","label":"SNPs","pAvg":0.01634,"pSD":0.00722,"pScaled":0.0107,"pRank":13,"nSamples":50,"individualID.1":11,"individualID.2":49,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":1207,"infectionDiff":1528,"infectionDiffY":4.1863,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"011_050","label":"SNPs","pAvg":0.00975,"pSD":0.00324,"pScaled":0.04256,"pRank":8,"nSamples":500,"individualID.1":11,"individualID.2":50,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":1061,"infectionDiff":1201,"infectionDiffY":3.29041,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"011_051","label":"SNPs","pAvg":0.00929,"pSD":0.00207,"pScaled":0.0044,"pRank":37,"nSamples":50,"individualID.1":11,"individualID.2":51,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":975,"infectionDiff":2168,"infectionDiffY":5.93973,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"011_052","label":"SNPs","pAvg":0.00887,"pSD":0.002,"pScaled":0.00333,"pRank":36,"nSamples":50,"individualID.1":11,"individualID.2":52,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":2808,"infectionDiff":3196,"infectionDiffY":8.75616,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"011_053","label":"SNPs","pAvg":0.01055,"pSD":0.00239,"pScaled":0.00705,"pRank":16,"nSamples":50,"individualID.1":11,"individualID.2":53,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":1496,"infectionDiff":2660,"infectionDiffY":7.28767,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"011_054","label":"SNPs","pAvg":0.00543,"pSD":0.00143,"pScaled":0.00141,"pRank":36,"nSamples":50,"individualID.1":11,"individualID.2":54,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":2667,"infectionDiff":3584,"infectionDiffY":9.81918,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"011_055","label":"SNPs","pAvg":0.00909,"pSD":0.00254,"pScaled":0.00279,"pRank":20,"nSamples":50,"individualID.1":11,"individualID.2":55,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":1650,"infectionDiff":2852,"infectionDiffY":7.8137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"011_056","label":"SNPs","pAvg":0.00865,"pSD":0.00152,"pScaled":0.00207,"pRank":25,"nSamples":50,"individualID.1":11,"individualID.2":56,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":2074,"infectionDiff":2936,"infectionDiffY":8.04384,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"011_057","label":"SNPs","pAvg":0.00911,"pSD":0.00171,"pScaled":0.00182,"pRank":28,"nSamples":50,"individualID.1":11,"individualID.2":57,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":2637,"infectionDiff":3586,"infectionDiffY":9.82466,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"011_058","label":"SNPs","pAvg":0.00088,"pSD":0.0027,"pScaled":0.00087,"pRank":57,"nSamples":500,"individualID.1":11,"individualID.2":58,"transmission":false,"snpDist":11,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":2922,"infectionDiff":3275,"infectionDiffY":8.9726,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"011_059","label":"SNPs","pAvg":0.00081,"pSD":0.00268,"pScaled":0.00116,"pRank":32,"nSamples":500,"individualID.1":11,"individualID.2":59,"transmission":false,"snpDist":11,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":2302,"infectionDiff":1739,"infectionDiffY":4.76438,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"011_060","label":"SNPs","pAvg":0.01671,"pSD":0.00334,"pScaled":0.0081,"pRank":20,"nSamples":50,"individualID.1":11,"individualID.2":60,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":2963,"infectionDiff":3917,"infectionDiffY":10.73151,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"011_061","label":"SNPs","pAvg":0.00162,"pSD":0.00047,"pScaled":0.00308,"pRank":41,"nSamples":500,"individualID.1":11,"individualID.2":61,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":2756,"infectionDiff":3135,"infectionDiffY":8.58904,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"011_062","label":"SNPs","pAvg":0.00801,"pSD":0.00218,"pScaled":0.00212,"pRank":32,"nSamples":50,"individualID.1":11,"individualID.2":62,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":1491,"infectionDiff":2039,"infectionDiffY":5.5863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"011_063","label":"SNPs","pAvg":0.00875,"pSD":0.00154,"pScaled":0.00421,"pRank":17,"nSamples":50,"individualID.1":11,"individualID.2":63,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":923,"infectionDiff":1834,"infectionDiffY":5.02466,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"011_064","label":"SNPs","pAvg":0.00582,"pSD":0.00136,"pScaled":0.00221,"pRank":22,"nSamples":50,"individualID.1":11,"individualID.2":64,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":1706,"infectionDiff":2816,"infectionDiffY":7.71507,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"011_065","label":"SNPs","pAvg":0.0032,"pSD":0.00088,"pScaled":0.00247,"pRank":27,"nSamples":50,"individualID.1":11,"individualID.2":65,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":1714,"infectionDiff":2749,"infectionDiffY":7.53151,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"011_066","label":"SNPs","pAvg":0.0184,"pSD":0.00482,"pScaled":0.00486,"pRank":15,"nSamples":50,"individualID.1":11,"individualID.2":66,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":1861,"infectionDiff":2896,"infectionDiffY":7.93425,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"011_067","label":"SNPs","pAvg":0.00088,"pSD":0.00269,"pScaled":0.00022,"pRank":80,"nSamples":500,"individualID.1":11,"individualID.2":67,"transmission":false,"snpDist":11,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":2982,"infectionDiff":3981,"infectionDiffY":10.90685,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"011_068","label":"SNPs","pAvg":0.00788,"pSD":0.00209,"pScaled":0.00172,"pRank":49,"nSamples":50,"individualID.1":11,"individualID.2":68,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":2589,"infectionDiff":3633,"infectionDiffY":9.95342,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"011_069","label":"SNPs","pAvg":0.0017,"pSD":0.00046,"pScaled":0.00055,"pRank":58,"nSamples":50,"individualID.1":11,"individualID.2":69,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":2633,"infectionDiff":3660,"infectionDiffY":10.0274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"011_070","label":"SNPs","pAvg":0.01487,"pSD":0.00295,"pScaled":0.0046,"pRank":23,"nSamples":50,"individualID.1":11,"individualID.2":70,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":1170,"infectionDiff":2077,"infectionDiffY":5.69041,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"011_071","label":"SNPs","pAvg":0.00144,"pSD":0.0045,"pScaled":0.00147,"pRank":39,"nSamples":500,"individualID.1":11,"individualID.2":71,"transmission":false,"snpDist":12,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":2689,"infectionDiff":2336,"infectionDiffY":6.4,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"011_072","label":"SNPs","pAvg":0.00519,"pSD":0.00134,"pScaled":0.00158,"pRank":27,"nSamples":50,"individualID.1":11,"individualID.2":72,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":1129,"infectionDiff":2255,"infectionDiffY":6.17808,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"011_073","label":"SNPs","pAvg":0.00393,"pSD":0.00119,"pScaled":0.00289,"pRank":25,"nSamples":50,"individualID.1":11,"individualID.2":73,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":2210,"infectionDiff":3006,"infectionDiffY":8.23562,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"011_074","label":"SNPs","pAvg":0.00149,"pSD":0.00046,"pScaled":0.00082,"pRank":34,"nSamples":50,"individualID.1":11,"individualID.2":74,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":2051,"infectionDiff":2386,"infectionDiffY":6.53699,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"011_075","label":"SNPs","pAvg":0.00037,"pSD":0.00116,"pScaled":0.00159,"pRank":52,"nSamples":500,"individualID.1":11,"individualID.2":75,"transmission":false,"snpDist":13,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":2717,"infectionDiff":3959,"infectionDiffY":10.84658,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"011_076","label":"SNPs","pAvg":0.0049,"pSD":0.00125,"pScaled":0.0012,"pRank":56,"nSamples":50,"individualID.1":11,"individualID.2":76,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":2952,"infectionDiff":3633,"infectionDiffY":9.95342,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"011_077","label":"SNPs","pAvg":0.00407,"pSD":0.00085,"pScaled":0.0009,"pRank":58,"nSamples":50,"individualID.1":11,"individualID.2":77,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":2105,"infectionDiff":3348,"infectionDiffY":9.1726,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"011_078","label":"SNPs","pAvg":0.01701,"pSD":0.00363,"pScaled":0.00377,"pRank":25,"nSamples":50,"individualID.1":11,"individualID.2":78,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":2795,"infectionDiff":3661,"infectionDiffY":10.03014,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"011_079","label":"SNPs","pAvg":0.00455,"pSD":0.00101,"pScaled":0.00229,"pRank":25,"nSamples":50,"individualID.1":11,"individualID.2":79,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":2204,"infectionDiff":2944,"infectionDiffY":8.06575,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"011_080","label":"SNPs","pAvg":0.00173,"pSD":0.00051,"pScaled":0.01267,"pRank":20,"nSamples":500,"individualID.1":11,"individualID.2":80,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":2213,"infectionDiff":2877,"infectionDiffY":7.88219,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"011_081","label":"SNPs","pAvg":0.00381,"pSD":0.00134,"pScaled":0.00095,"pRank":50,"nSamples":50,"individualID.1":11,"individualID.2":81,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":2928,"infectionDiff":4043,"infectionDiffY":11.07671,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"011_082","label":"SNPs","pAvg":0.00754,"pSD":0.00214,"pScaled":0.00164,"pRank":43,"nSamples":50,"individualID.1":11,"individualID.2":82,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":2933,"infectionDiff":4121,"infectionDiffY":11.29041,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"011_083","label":"SNPs","pAvg":0.00802,"pSD":0.00206,"pScaled":0.00312,"pRank":45,"nSamples":50,"individualID.1":11,"individualID.2":83,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":2708,"infectionDiff":3590,"infectionDiffY":9.83562,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"011_084","label":"SNPs","pAvg":0.00047,"pSD":0.00146,"pScaled":0.00024,"pRank":58,"nSamples":500,"individualID.1":11,"individualID.2":84,"transmission":false,"snpDist":12,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":2952,"infectionDiff":3638,"infectionDiffY":9.96712,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"011_085","label":"SNPs","pAvg":0.00526,"pSD":0.00126,"pScaled":0.0018,"pRank":11,"nSamples":50,"individualID.1":11,"individualID.2":85,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":2063,"infectionDiff":3303,"infectionDiffY":9.04932,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"011_086","label":"SNPs","pAvg":0.0017,"pSD":0.00047,"pScaled":0.00054,"pRank":38,"nSamples":50,"individualID.1":11,"individualID.2":86,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":1901,"infectionDiff":2932,"infectionDiffY":8.03288,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"011_087","label":"SNPs","pAvg":0.0002,"pSD":0.00063,"pScaled":0.00016,"pRank":68,"nSamples":500,"individualID.1":11,"individualID.2":87,"transmission":false,"snpDist":11,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":2436,"infectionDiff":3471,"infectionDiffY":9.50959,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"011_088","label":"SNPs","pAvg":0.00877,"pSD":0.00244,"pScaled":0.0017,"pRank":34,"nSamples":50,"individualID.1":11,"individualID.2":88,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":2546,"infectionDiff":3806,"infectionDiffY":10.4274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"011_089","label":"SNPs","pAvg":0.00055,"pSD":0.00171,"pScaled":0.00018,"pRank":60,"nSamples":500,"individualID.1":11,"individualID.2":89,"transmission":false,"snpDist":11,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":2837,"infectionDiff":3642,"infectionDiffY":9.97808,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"011_090","label":"SNPs","pAvg":0.00053,"pSD":0.00165,"pScaled":0.00014,"pRank":76,"nSamples":500,"individualID.1":11,"individualID.2":90,"transmission":false,"snpDist":12,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":2908,"infectionDiff":3869,"infectionDiffY":10.6,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"011_091","label":"SNPs","pAvg":0.00092,"pSD":0.00287,"pScaled":0.00046,"pRank":49,"nSamples":500,"individualID.1":11,"individualID.2":91,"transmission":false,"snpDist":11,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":2929,"infectionDiff":3460,"infectionDiffY":9.47945,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"011_092","label":"SNPs","pAvg":0.00046,"pSD":0.00141,"pScaled":0.00018,"pRank":62,"nSamples":500,"individualID.1":11,"individualID.2":92,"transmission":false,"snpDist":11,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":2976,"infectionDiff":3611,"infectionDiffY":9.89315,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"011_093","label":"SNPs","pAvg":0.00059,"pSD":0.00183,"pScaled":0.00016,"pRank":68,"nSamples":500,"individualID.1":11,"individualID.2":93,"transmission":false,"snpDist":12,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":2813,"infectionDiff":3836,"infectionDiffY":10.50959,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"011_094","label":"SNPs","pAvg":0.00036,"pSD":0.00113,"pScaled":0.00012,"pRank":88,"nSamples":500,"individualID.1":11,"individualID.2":94,"transmission":false,"snpDist":11,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":2859,"infectionDiff":4108,"infectionDiffY":11.25479,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"011_095","label":"SNPs","pAvg":0.0002,"pSD":0.00062,"pScaled":0.0001,"pRank":69,"nSamples":500,"individualID.1":11,"individualID.2":95,"transmission":false,"snpDist":11,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":2442,"infectionDiff":3540,"infectionDiffY":9.69863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"011_096","label":"SNPs","pAvg":0.00018,"pSD":0.00055,"pScaled":0.00006,"pRank":82,"nSamples":500,"individualID.1":11,"individualID.2":96,"transmission":false,"snpDist":11,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":2536,"infectionDiff":3772,"infectionDiffY":10.33425,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"011_097","label":"SNPs","pAvg":0.00095,"pSD":0.00297,"pScaled":0.00021,"pRank":78,"nSamples":500,"individualID.1":11,"individualID.2":97,"transmission":false,"snpDist":11,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":2779,"infectionDiff":3928,"infectionDiffY":10.76164,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"011_098","label":"SNPs","pAvg":0.00107,"pSD":0.00333,"pScaled":0.0003,"pRank":54,"nSamples":500,"individualID.1":11,"individualID.2":98,"transmission":false,"snpDist":11,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":2598,"infectionDiff":3701,"infectionDiffY":10.13973,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"011_099","label":"SNPs","pAvg":0.00302,"pSD":0.00084,"pScaled":0.00103,"pRank":38,"nSamples":50,"individualID.1":11,"individualID.2":99,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":2581,"infectionDiff":3565,"infectionDiffY":9.76712,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"011_100","label":"SNPs","pAvg":0.00467,"pSD":0.00098,"pScaled":0.00138,"pRank":63,"nSamples":50,"individualID.1":11,"individualID.2":100,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-18 02:31:21","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1991-10-25 12:28:14","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":2780,"infectionDiff":3943,"infectionDiffY":10.80274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_003","label":"SNPs","pAvg":0.01621,"pSD":0.0044,"pScaled":0.05115,"pRank":9,"nSamples":500,"individualID.1":12,"individualID.2":3,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1990-12-11 19:24:08","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1998-10-30 22:42:57","sampleDiff":3708,"infectionDiff":973,"infectionDiffY":2.66575,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"012_006","label":"SNPs","pAvg":0.00515,"pSD":0.00204,"pScaled":0.00329,"pRank":23,"nSamples":50,"individualID.1":12,"individualID.2":6,"transmission":false,"snpDist":4,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":1424,"infectionDiff":1531,"infectionDiffY":4.19452,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_009","label":"SNPs","pAvg":0.01012,"pSD":0.00244,"pScaled":0.0451,"pRank":5,"nSamples":500,"individualID.1":12,"individualID.2":9,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":3948,"infectionDiff":2214,"infectionDiffY":6.06575,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"012_010","label":"SNPs","pAvg":0.03211,"pSD":0.00828,"pScaled":0.02327,"pRank":6,"nSamples":50,"individualID.1":12,"individualID.2":10,"transmission":false,"snpDist":3,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":1399,"infectionDiff":1255,"infectionDiffY":3.43836,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"012_011","label":"SNPs","pAvg":0.04971,"pSD":0.01008,"pScaled":0.01987,"pRank":4,"nSamples":50,"individualID.1":12,"individualID.2":11,"transmission":false,"snpDist":3,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1988-04-18 02:31:21","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1991-10-25 12:28:14","sampleDiff":1146,"infectionDiff":5,"infectionDiffY":0.0137,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"012_014","label":"SNPs","pAvg":0.00758,"pSD":0.00362,"pScaled":0.00416,"pRank":26,"nSamples":50,"individualID.1":12,"individualID.2":14,"transmission":false,"snpDist":3,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":1979,"infectionDiff":1791,"infectionDiffY":4.90685,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"012_015","label":"SNPs","pAvg":0.0431,"pSD":0.00927,"pScaled":0.0169,"pRank":5,"nSamples":50,"individualID.1":12,"individualID.2":15,"transmission":false,"snpDist":3,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1988-08-20 08:24:18","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1992-08-15 08:05:31","sampleDiff":1441,"infectionDiff":129,"infectionDiffY":0.35342,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"012_016","label":"SNPs","pAvg":0.04616,"pSD":0.01291,"pScaled":0.11505,"pRank":3,"nSamples":500,"individualID.1":12,"individualID.2":16,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1989-04-18 04:17:39","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1995-12-16 04:24:53","sampleDiff":2658,"infectionDiff":370,"infectionDiffY":1.0137,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"012_017","label":"SNPs","pAvg":0.00791,"pSD":0.00369,"pScaled":0.01103,"pRank":20,"nSamples":500,"individualID.1":12,"individualID.2":17,"transmission":true,"snpDist":4,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":3117,"infectionDiff":1563,"infectionDiffY":4.28219,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"012_018","label":"SNPs","pAvg":0.01699,"pSD":0.004,"pScaled":0.01925,"pRank":19,"nSamples":500,"individualID.1":12,"individualID.2":18,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":1871,"infectionDiff":1988,"infectionDiffY":5.44658,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"012_021","label":"SNPs","pAvg":0.00769,"pSD":0.00215,"pScaled":0.00734,"pRank":28,"nSamples":500,"individualID.1":12,"individualID.2":21,"transmission":false,"snpDist":4,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":3316,"infectionDiff":1985,"infectionDiffY":5.43836,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"012_022","label":"SNPs","pAvg":0.0423,"pSD":0.00906,"pScaled":0.08253,"pRank":4,"nSamples":500,"individualID.1":12,"individualID.2":22,"transmission":false,"snpDist":4,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1989-06-06 04:07:23","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1991-10-22 14:29:51","sampleDiff":1143,"infectionDiff":419,"infectionDiffY":1.14795,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"012_023","label":"SNPs","pAvg":0.00954,"pSD":0.00236,"pScaled":0.00425,"pRank":39,"nSamples":50,"individualID.1":12,"individualID.2":23,"transmission":false,"snpDist":4,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":4105,"infectionDiff":3753,"infectionDiffY":10.28219,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"012_024","label":"SNPs","pAvg":0.0167,"pSD":0.00555,"pScaled":0.01291,"pRank":10,"nSamples":50,"individualID.1":12,"individualID.2":24,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1991-02-07 21:59:42","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1992-10-05 23:05:30","sampleDiff":1492,"infectionDiff":1031,"infectionDiffY":2.82466,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_025","label":"SNPs","pAvg":0.40105,"pSD":0.44327,"pScaled":0.091,"pRank":7,"nSamples":77,"individualID.1":12,"individualID.2":25,"transmission":false,"snpDist":2,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1989-07-09 14:49:21","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1990-01-24 23:05:50","sampleDiff":507,"infectionDiff":453,"infectionDiffY":1.2411,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"1","snpClose":true} {"pairID":"012_026","label":"SNPs","pAvg":0.00444,"pSD":0.00094,"pScaled":0.00156,"pRank":46,"nSamples":50,"individualID.1":12,"individualID.2":26,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":3709,"infectionDiff":3050,"infectionDiffY":8.35616,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_027","label":"SNPs","pAvg":0.00808,"pSD":0.00221,"pScaled":0.00288,"pRank":49,"nSamples":50,"individualID.1":12,"individualID.2":27,"transmission":false,"snpDist":4,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":3882,"infectionDiff":3639,"infectionDiffY":9.96986,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"012_028","label":"SNPs","pAvg":0.00948,"pSD":0.00228,"pScaled":0.00265,"pRank":38,"nSamples":50,"individualID.1":12,"individualID.2":28,"transmission":false,"snpDist":4,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":3098,"infectionDiff":2463,"infectionDiffY":6.74795,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"012_029","label":"SNPs","pAvg":0.02944,"pSD":0.009,"pScaled":0.07267,"pRank":6,"nSamples":500,"individualID.1":12,"individualID.2":29,"transmission":false,"snpDist":4,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1990-12-27 23:28:20","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1992-03-01 23:20:54","sampleDiff":1274,"infectionDiff":989,"infectionDiffY":2.70959,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"012_030","label":"SNPs","pAvg":0.0042,"pSD":0.00188,"pScaled":0.00294,"pRank":24,"nSamples":50,"individualID.1":12,"individualID.2":30,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":1349,"infectionDiff":1470,"infectionDiffY":4.0274,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_031","label":"SNPs","pAvg":0.03104,"pSD":0.00806,"pScaled":0.05121,"pRank":7,"nSamples":500,"individualID.1":12,"individualID.2":31,"transmission":false,"snpDist":4,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1991-01-03 16:49:07","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1991-07-17 03:37:35","sampleDiff":1045,"infectionDiff":996,"infectionDiffY":2.72877,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"012_032","label":"SNPs","pAvg":0.03273,"pSD":0.00904,"pScaled":0.02231,"pRank":8,"nSamples":50,"individualID.1":12,"individualID.2":32,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":2779,"infectionDiff":1416,"infectionDiffY":3.87945,"timeCat":"4","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"012_033","label":"SNPs","pAvg":0.00507,"pSD":0.00129,"pScaled":0.00231,"pRank":34,"nSamples":50,"individualID.1":12,"individualID.2":33,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":3326,"infectionDiff":3321,"infectionDiffY":9.09863,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_034","label":"SNPs","pAvg":0.0177,"pSD":0.00575,"pScaled":0.05947,"pRank":7,"nSamples":500,"individualID.1":12,"individualID.2":34,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":2348,"infectionDiff":1035,"infectionDiffY":2.83562,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_035","label":"SNPs","pAvg":0.01727,"pSD":0.00393,"pScaled":0.00449,"pRank":24,"nSamples":50,"individualID.1":12,"individualID.2":35,"transmission":false,"snpDist":4,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":3288,"infectionDiff":2118,"infectionDiffY":5.80274,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"012_036","label":"SNPs","pAvg":0.00755,"pSD":0.0019,"pScaled":0.00204,"pRank":50,"nSamples":50,"individualID.1":12,"individualID.2":36,"transmission":false,"snpDist":4,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":3087,"infectionDiff":2929,"infectionDiffY":8.02466,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"012_037","label":"SNPs","pAvg":0.00559,"pSD":0.00138,"pScaled":0.00564,"pRank":32,"nSamples":500,"individualID.1":12,"individualID.2":37,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":3474,"infectionDiff":2451,"infectionDiffY":6.71507,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"012_038","label":"SNPs","pAvg":0.00451,"pSD":0.00102,"pScaled":0.00536,"pRank":28,"nSamples":500,"individualID.1":12,"individualID.2":38,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":2536,"infectionDiff":2096,"infectionDiffY":5.74247,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_039","label":"SNPs","pAvg":0.00434,"pSD":0.00185,"pScaled":0.00936,"pRank":21,"nSamples":500,"individualID.1":12,"individualID.2":39,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":2702,"infectionDiff":1541,"infectionDiffY":4.22192,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_040","label":"SNPs","pAvg":0.00885,"pSD":0.00232,"pScaled":0.00792,"pRank":34,"nSamples":500,"individualID.1":12,"individualID.2":40,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":3110,"infectionDiff":3185,"infectionDiffY":8.72603,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"012_041","label":"SNPs","pAvg":0.01118,"pSD":0.00347,"pScaled":0.02902,"pRank":13,"nSamples":500,"individualID.1":12,"individualID.2":41,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":3960,"infectionDiff":1385,"infectionDiffY":3.79452,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_042","label":"SNPs","pAvg":0.02902,"pSD":0.00888,"pScaled":0.01071,"pRank":10,"nSamples":50,"individualID.1":12,"individualID.2":42,"transmission":false,"snpDist":4,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":1363,"infectionDiff":1037,"infectionDiffY":2.8411,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"012_043","label":"SNPs","pAvg":0.01762,"pSD":0.00787,"pScaled":0.02378,"pRank":15,"nSamples":500,"individualID.1":12,"individualID.2":43,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":4085,"infectionDiff":1804,"infectionDiffY":4.94247,"timeCat":"5","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"012_044","label":"SNPs","pAvg":0.00875,"pSD":0.00375,"pScaled":0.00235,"pRank":18,"nSamples":50,"individualID.1":12,"individualID.2":44,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":1705,"infectionDiff":1705,"infectionDiffY":4.67123,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"012_045","label":"SNPs","pAvg":0.01135,"pSD":0.00282,"pScaled":0.00687,"pRank":23,"nSamples":50,"individualID.1":12,"individualID.2":45,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":3483,"infectionDiff":2696,"infectionDiffY":7.3863,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"012_046","label":"SNPs","pAvg":0.00543,"pSD":0.0023,"pScaled":0.00314,"pRank":27,"nSamples":50,"individualID.1":12,"individualID.2":46,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":2388,"infectionDiff":1650,"infectionDiffY":4.52055,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"012_047","label":"SNPs","pAvg":0.01645,"pSD":0.00405,"pScaled":0.00355,"pRank":27,"nSamples":50,"individualID.1":12,"individualID.2":47,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":2334,"infectionDiff":2381,"infectionDiffY":6.52329,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"012_048","label":"SNPs","pAvg":0.00923,"pSD":0.00216,"pScaled":0.00407,"pRank":25,"nSamples":50,"individualID.1":12,"individualID.2":48,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":2617,"infectionDiff":1915,"infectionDiffY":5.24658,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"012_049","label":"SNPs","pAvg":0.00877,"pSD":0.00422,"pScaled":0.00574,"pRank":16,"nSamples":50,"individualID.1":12,"individualID.2":49,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":2352,"infectionDiff":1533,"infectionDiffY":4.2,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"012_050","label":"SNPs","pAvg":0.00975,"pSD":0.00324,"pScaled":0.04256,"pRank":8,"nSamples":500,"individualID.1":12,"individualID.2":50,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":2207,"infectionDiff":1206,"infectionDiffY":3.30411,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_051","label":"SNPs","pAvg":0.01767,"pSD":0.00422,"pScaled":0.00837,"pRank":25,"nSamples":50,"individualID.1":12,"individualID.2":51,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":2121,"infectionDiff":2173,"infectionDiffY":5.95342,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"012_052","label":"SNPs","pAvg":0.00454,"pSD":0.0011,"pScaled":0.0017,"pRank":48,"nSamples":50,"individualID.1":12,"individualID.2":52,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":3954,"infectionDiff":3201,"infectionDiffY":8.76986,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_053","label":"SNPs","pAvg":0.00547,"pSD":0.0013,"pScaled":0.00365,"pRank":26,"nSamples":50,"individualID.1":12,"individualID.2":53,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":2641,"infectionDiff":2665,"infectionDiffY":7.30137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_054","label":"SNPs","pAvg":0.00543,"pSD":0.00143,"pScaled":0.00141,"pRank":36,"nSamples":50,"individualID.1":12,"individualID.2":54,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":3812,"infectionDiff":3589,"infectionDiffY":9.83288,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_055","label":"SNPs","pAvg":0.01774,"pSD":0.00444,"pScaled":0.00545,"pRank":11,"nSamples":50,"individualID.1":12,"individualID.2":55,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":2796,"infectionDiff":2857,"infectionDiffY":7.8274,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"012_056","label":"SNPs","pAvg":0.00445,"pSD":0.00098,"pScaled":0.00106,"pRank":35,"nSamples":50,"individualID.1":12,"individualID.2":56,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":3220,"infectionDiff":2941,"infectionDiffY":8.05753,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_057","label":"SNPs","pAvg":0.00465,"pSD":0.00103,"pScaled":0.00093,"pRank":39,"nSamples":50,"individualID.1":12,"individualID.2":57,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":3783,"infectionDiff":3592,"infectionDiffY":9.8411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_058","label":"SNPs","pAvg":0.00451,"pSD":0.00102,"pScaled":0.00445,"pRank":42,"nSamples":500,"individualID.1":12,"individualID.2":58,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":4068,"infectionDiff":3280,"infectionDiffY":8.9863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_059","label":"SNPs","pAvg":0.01533,"pSD":0.00706,"pScaled":0.02204,"pRank":17,"nSamples":500,"individualID.1":12,"individualID.2":59,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":3447,"infectionDiff":1744,"infectionDiffY":4.77808,"timeCat":"5","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"012_060","label":"SNPs","pAvg":0.00872,"pSD":0.00203,"pScaled":0.00423,"pRank":39,"nSamples":50,"individualID.1":12,"individualID.2":60,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":4109,"infectionDiff":3922,"infectionDiffY":10.74521,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"012_061","label":"SNPs","pAvg":0.00162,"pSD":0.00047,"pScaled":0.00308,"pRank":41,"nSamples":500,"individualID.1":12,"individualID.2":61,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":3902,"infectionDiff":3140,"infectionDiffY":8.60274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"012_062","label":"SNPs","pAvg":0.01577,"pSD":0.00402,"pScaled":0.00417,"pRank":23,"nSamples":50,"individualID.1":12,"individualID.2":62,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":2637,"infectionDiff":2044,"infectionDiffY":5.6,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"012_063","label":"SNPs","pAvg":0.00455,"pSD":0.00087,"pScaled":0.00219,"pRank":22,"nSamples":50,"individualID.1":12,"individualID.2":63,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":2069,"infectionDiff":1839,"infectionDiffY":5.03836,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_064","label":"SNPs","pAvg":0.00582,"pSD":0.00136,"pScaled":0.00221,"pRank":22,"nSamples":50,"individualID.1":12,"individualID.2":64,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":2851,"infectionDiff":2821,"infectionDiffY":7.72877,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"012_065","label":"SNPs","pAvg":0.00166,"pSD":0.00053,"pScaled":0.00128,"pRank":38,"nSamples":50,"individualID.1":12,"individualID.2":65,"transmission":false,"snpDist":8,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":2860,"infectionDiff":2754,"infectionDiffY":7.54521,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"012_066","label":"SNPs","pAvg":0.00952,"pSD":0.00244,"pScaled":0.00251,"pRank":24,"nSamples":50,"individualID.1":12,"individualID.2":66,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":3006,"infectionDiff":2901,"infectionDiffY":7.94795,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"012_067","label":"SNPs","pAvg":0.00459,"pSD":0.00106,"pScaled":0.00116,"pRank":58,"nSamples":50,"individualID.1":12,"individualID.2":67,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":4128,"infectionDiff":3986,"infectionDiffY":10.92055,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_068","label":"SNPs","pAvg":0.00788,"pSD":0.00209,"pScaled":0.00172,"pRank":49,"nSamples":50,"individualID.1":12,"individualID.2":68,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":3734,"infectionDiff":3638,"infectionDiffY":9.96712,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"012_069","label":"SNPs","pAvg":0.0017,"pSD":0.00046,"pScaled":0.00055,"pRank":58,"nSamples":50,"individualID.1":12,"individualID.2":69,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":3779,"infectionDiff":3665,"infectionDiffY":10.0411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"012_070","label":"SNPs","pAvg":0.00787,"pSD":0.00205,"pScaled":0.00244,"pRank":28,"nSamples":50,"individualID.1":12,"individualID.2":70,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":2316,"infectionDiff":2082,"infectionDiffY":5.70411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"012_071","label":"SNPs","pAvg":0.00077,"pSD":0.00241,"pScaled":0.00078,"pRank":42,"nSamples":500,"individualID.1":12,"individualID.2":71,"transmission":false,"snpDist":11,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":3834,"infectionDiff":2341,"infectionDiffY":6.4137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"012_072","label":"SNPs","pAvg":0.01012,"pSD":0.00269,"pScaled":0.00308,"pRank":19,"nSamples":50,"individualID.1":12,"individualID.2":72,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":2275,"infectionDiff":2260,"infectionDiffY":6.19178,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"012_073","label":"SNPs","pAvg":0.00194,"pSD":0.00057,"pScaled":0.00143,"pRank":36,"nSamples":50,"individualID.1":12,"individualID.2":73,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":3356,"infectionDiff":3011,"infectionDiffY":8.24932,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"012_074","label":"SNPs","pAvg":0.00149,"pSD":0.00046,"pScaled":0.00082,"pRank":34,"nSamples":50,"individualID.1":12,"individualID.2":74,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":3196,"infectionDiff":2391,"infectionDiffY":6.55068,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"012_075","label":"SNPs","pAvg":0.00019,"pSD":0.00059,"pScaled":0.00082,"pRank":74,"nSamples":500,"individualID.1":12,"individualID.2":75,"transmission":false,"snpDist":12,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":3863,"infectionDiff":3964,"infectionDiffY":10.86027,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"012_076","label":"SNPs","pAvg":0.00988,"pSD":0.00263,"pScaled":0.00242,"pRank":35,"nSamples":50,"individualID.1":12,"individualID.2":76,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":4097,"infectionDiff":3638,"infectionDiffY":9.96712,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"012_077","label":"SNPs","pAvg":0.00407,"pSD":0.00085,"pScaled":0.0009,"pRank":58,"nSamples":50,"individualID.1":12,"individualID.2":77,"transmission":false,"snpDist":4,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":3250,"infectionDiff":3353,"infectionDiffY":9.1863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_078","label":"SNPs","pAvg":0.00852,"pSD":0.00217,"pScaled":0.00189,"pRank":55,"nSamples":50,"individualID.1":12,"individualID.2":78,"transmission":false,"snpDist":4,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":3941,"infectionDiff":3666,"infectionDiffY":10.04384,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"012_079","label":"SNPs","pAvg":0.00455,"pSD":0.00101,"pScaled":0.00229,"pRank":25,"nSamples":50,"individualID.1":12,"individualID.2":79,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":3350,"infectionDiff":2949,"infectionDiffY":8.07945,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_080","label":"SNPs","pAvg":0.00173,"pSD":0.00051,"pScaled":0.01267,"pRank":20,"nSamples":500,"individualID.1":12,"individualID.2":80,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":3358,"infectionDiff":2882,"infectionDiffY":7.89589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"012_081","label":"SNPs","pAvg":0.00188,"pSD":0.00059,"pScaled":0.00047,"pRank":80,"nSamples":50,"individualID.1":12,"individualID.2":81,"transmission":false,"snpDist":4,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":4074,"infectionDiff":4048,"infectionDiffY":11.09041,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"012_082","label":"SNPs","pAvg":0.00754,"pSD":0.00214,"pScaled":0.00164,"pRank":43,"nSamples":50,"individualID.1":12,"individualID.2":82,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":4078,"infectionDiff":4126,"infectionDiffY":11.30411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"012_083","label":"SNPs","pAvg":0.00802,"pSD":0.00206,"pScaled":0.00312,"pRank":45,"nSamples":50,"individualID.1":12,"individualID.2":83,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":3854,"infectionDiff":3595,"infectionDiffY":9.84932,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"012_084","label":"SNPs","pAvg":0.00047,"pSD":0.00146,"pScaled":0.00024,"pRank":58,"nSamples":500,"individualID.1":12,"individualID.2":84,"transmission":false,"snpDist":11,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":4097,"infectionDiff":3644,"infectionDiffY":9.98356,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"012_085","label":"SNPs","pAvg":0.00526,"pSD":0.00126,"pScaled":0.0018,"pRank":11,"nSamples":50,"individualID.1":12,"individualID.2":85,"transmission":false,"snpDist":9,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":3209,"infectionDiff":3309,"infectionDiffY":9.06575,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_086","label":"SNPs","pAvg":0.0017,"pSD":0.00047,"pScaled":0.00054,"pRank":38,"nSamples":50,"individualID.1":12,"individualID.2":86,"transmission":false,"snpDist":6,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":3047,"infectionDiff":2937,"infectionDiffY":8.04658,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"012_087","label":"SNPs","pAvg":0.002,"pSD":0.0006,"pScaled":0.00163,"pRank":31,"nSamples":50,"individualID.1":12,"individualID.2":87,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":3582,"infectionDiff":3476,"infectionDiffY":9.52329,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"012_088","label":"SNPs","pAvg":0.00877,"pSD":0.00244,"pScaled":0.0017,"pRank":34,"nSamples":50,"individualID.1":12,"individualID.2":88,"transmission":false,"snpDist":5,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":3692,"infectionDiff":3811,"infectionDiffY":10.4411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"012_089","label":"SNPs","pAvg":0.00551,"pSD":0.00139,"pScaled":0.00177,"pRank":13,"nSamples":50,"individualID.1":12,"individualID.2":89,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":3983,"infectionDiff":3647,"infectionDiffY":9.99178,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_090","label":"SNPs","pAvg":0.00053,"pSD":0.00165,"pScaled":0.00014,"pRank":76,"nSamples":500,"individualID.1":12,"individualID.2":90,"transmission":false,"snpDist":11,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":4054,"infectionDiff":3874,"infectionDiffY":10.6137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"012_091","label":"SNPs","pAvg":0.00921,"pSD":0.00242,"pScaled":0.00462,"pRank":11,"nSamples":50,"individualID.1":12,"individualID.2":91,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":4075,"infectionDiff":3465,"infectionDiffY":9.49315,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"012_092","label":"SNPs","pAvg":0.00455,"pSD":0.0011,"pScaled":0.00185,"pRank":15,"nSamples":50,"individualID.1":12,"individualID.2":92,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":4122,"infectionDiff":3616,"infectionDiffY":9.90685,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_093","label":"SNPs","pAvg":0.00059,"pSD":0.00183,"pScaled":0.00016,"pRank":68,"nSamples":500,"individualID.1":12,"individualID.2":93,"transmission":false,"snpDist":11,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":3959,"infectionDiff":3842,"infectionDiffY":10.52603,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"012_094","label":"SNPs","pAvg":0.00179,"pSD":0.0005,"pScaled":0.00059,"pRank":60,"nSamples":50,"individualID.1":12,"individualID.2":94,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":4005,"infectionDiff":4113,"infectionDiffY":11.26849,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"012_095","label":"SNPs","pAvg":0.00199,"pSD":0.00055,"pScaled":0.00101,"pRank":32,"nSamples":50,"individualID.1":12,"individualID.2":95,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":3587,"infectionDiff":3545,"infectionDiffY":9.71233,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"012_096","label":"SNPs","pAvg":0.00178,"pSD":0.00045,"pScaled":0.00063,"pRank":51,"nSamples":50,"individualID.1":12,"individualID.2":96,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":3682,"infectionDiff":3777,"infectionDiffY":10.34795,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"012_097","label":"SNPs","pAvg":0.00953,"pSD":0.00252,"pScaled":0.00214,"pRank":23,"nSamples":50,"individualID.1":12,"individualID.2":97,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":3925,"infectionDiff":3933,"infectionDiffY":10.77534,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"012_098","label":"SNPs","pAvg":0.00526,"pSD":0.0014,"pScaled":0.00149,"pRank":16,"nSamples":50,"individualID.1":12,"individualID.2":98,"transmission":false,"snpDist":10,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":3744,"infectionDiff":3706,"infectionDiffY":10.15342,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"012_099","label":"SNPs","pAvg":0.00154,"pSD":0.0005,"pScaled":0.00052,"pRank":49,"nSamples":50,"individualID.1":12,"individualID.2":99,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":3727,"infectionDiff":3570,"infectionDiffY":9.78082,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"012_100","label":"SNPs","pAvg":0.00898,"pSD":0.00161,"pScaled":0.00265,"pRank":42,"nSamples":50,"individualID.1":12,"individualID.2":100,"transmission":false,"snpDist":7,"infectionDate.1":"1988-04-12 22:57:51","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1988-09-04 19:08:48","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":3926,"infectionDiff":3948,"infectionDiffY":10.81644,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"013_003","label":"SNPs","pAvg":0.02398,"pSD":0.00766,"pScaled":0.07566,"pRank":6,"nSamples":500,"individualID.1":13,"individualID.2":3,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1990-12-11 19:24:08","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1998-10-30 22:42:57","sampleDiff":4110,"infectionDiff":1359,"infectionDiffY":3.72329,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"013_006","label":"SNPs","pAvg":0.00555,"pSD":0.00177,"pScaled":0.00354,"pRank":22,"nSamples":50,"individualID.1":13,"individualID.2":6,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":1826,"infectionDiff":1917,"infectionDiffY":5.25205,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"013_007","label":"SNPs","pAvg":0.63726,"pSD":0.46355,"pScaled":0.21454,"pRank":4,"nSamples":131,"individualID.1":13,"individualID.2":7,"transmission":false,"snpDist":1,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1987-07-15 05:58:16","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1988-02-23 12:34:50","sampleDiff":208,"infectionDiff":114,"infectionDiffY":0.31233,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":true} {"pairID":"013_009","label":"SNPs","pAvg":0.01268,"pSD":0.00389,"pScaled":0.05652,"pRank":4,"nSamples":500,"individualID.1":13,"individualID.2":9,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":4350,"infectionDiff":2600,"infectionDiffY":7.12329,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"013_010","label":"SNPs","pAvg":0.00844,"pSD":0.00433,"pScaled":0.00612,"pRank":19,"nSamples":50,"individualID.1":13,"individualID.2":10,"transmission":false,"snpDist":3,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":1801,"infectionDiff":1641,"infectionDiffY":4.49589,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"013_011","label":"SNPs","pAvg":0.01774,"pSD":0.00426,"pScaled":0.00709,"pRank":10,"nSamples":50,"individualID.1":13,"individualID.2":11,"transmission":false,"snpDist":3,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1988-04-18 02:31:21","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1991-10-25 12:28:14","sampleDiff":1548,"infectionDiff":391,"infectionDiffY":1.07123,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_012","label":"SNPs","pAvg":0.63068,"pSD":0.47191,"pScaled":0.15808,"pRank":3,"nSamples":131,"individualID.1":13,"individualID.2":12,"transmission":false,"snpDist":2,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1988-04-12 22:57:51","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1988-09-04 19:08:48","sampleDiff":402,"infectionDiff":386,"infectionDiffY":1.05753,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":true} {"pairID":"013_014","label":"SNPs","pAvg":0.00409,"pSD":0.0012,"pScaled":0.00224,"pRank":32,"nSamples":50,"individualID.1":13,"individualID.2":14,"transmission":false,"snpDist":3,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":2380,"infectionDiff":2178,"infectionDiffY":5.96712,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_015","label":"SNPs","pAvg":0.02006,"pSD":0.00543,"pScaled":0.00786,"pRank":10,"nSamples":50,"individualID.1":13,"individualID.2":15,"transmission":false,"snpDist":3,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1988-08-20 08:24:18","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1992-08-15 08:05:31","sampleDiff":1842,"infectionDiff":516,"infectionDiffY":1.4137,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_016","label":"SNPs","pAvg":0.04136,"pSD":0.01258,"pScaled":0.10309,"pRank":4,"nSamples":500,"individualID.1":13,"individualID.2":16,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1989-04-18 04:17:39","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1995-12-16 04:24:53","sampleDiff":3060,"infectionDiff":756,"infectionDiffY":2.07123,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"013_017","label":"SNPs","pAvg":0.00673,"pSD":0.00171,"pScaled":0.00938,"pRank":22,"nSamples":500,"individualID.1":13,"individualID.2":17,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":3518,"infectionDiff":1949,"infectionDiffY":5.33973,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"013_018","label":"SNPs","pAvg":0.00751,"pSD":0.0022,"pScaled":0.00851,"pRank":31,"nSamples":500,"individualID.1":13,"individualID.2":18,"transmission":true,"snpDist":3,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":2273,"infectionDiff":2374,"infectionDiffY":6.50411,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"013_019","label":"SNPs","pAvg":0.90207,"pSD":0.2941,"pScaled":0.8194,"pRank":1,"nSamples":500,"individualID.1":13,"individualID.2":19,"transmission":true,"snpDist":2,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1987-12-12 09:17:01","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1991-09-26 03:18:54","sampleDiff":1518,"infectionDiff":264,"infectionDiffY":0.72329,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":true} {"pairID":"013_020","label":"SNPs","pAvg":0.6391,"pSD":0.46119,"pScaled":0.20023,"pRank":4,"nSamples":131,"individualID.1":13,"individualID.2":20,"transmission":true,"snpDist":2,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1987-03-30 17:23:41","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1994-08-15 09:04:39","sampleDiff":2572,"infectionDiff":7,"infectionDiffY":0.01918,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":true} {"pairID":"013_021","label":"SNPs","pAvg":0.00445,"pSD":0.00123,"pScaled":0.00425,"pRank":35,"nSamples":500,"individualID.1":13,"individualID.2":21,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":3718,"infectionDiff":2371,"infectionDiffY":6.49589,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_022","label":"SNPs","pAvg":0.01973,"pSD":0.0064,"pScaled":0.0385,"pRank":12,"nSamples":500,"individualID.1":13,"individualID.2":22,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1989-06-06 04:07:23","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1991-10-22 14:29:51","sampleDiff":1545,"infectionDiff":805,"infectionDiffY":2.20548,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"013_023","label":"SNPs","pAvg":0.00522,"pSD":0.00119,"pScaled":0.00233,"pRank":59,"nSamples":50,"individualID.1":13,"individualID.2":23,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":4507,"infectionDiff":4139,"infectionDiffY":11.33973,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"013_024","label":"SNPs","pAvg":0.01211,"pSD":0.00442,"pScaled":0.00936,"pRank":13,"nSamples":50,"individualID.1":13,"individualID.2":24,"transmission":false,"snpDist":3,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1991-02-07 21:59:42","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1992-10-05 23:05:30","sampleDiff":1894,"infectionDiff":1417,"infectionDiffY":3.88219,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"013_025","label":"SNPs","pAvg":0.43883,"pSD":0.47903,"pScaled":0.09957,"pRank":6,"nSamples":86,"individualID.1":13,"individualID.2":25,"transmission":false,"snpDist":2,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1989-07-09 14:49:21","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1990-01-24 23:05:50","sampleDiff":909,"infectionDiff":839,"infectionDiffY":2.29863,"timeCat":"3","Z1":"0","Z2":"1","Z3":"2","Z4":"2","snpClose":true} {"pairID":"013_026","label":"SNPs","pAvg":0.0078,"pSD":0.00236,"pScaled":0.00274,"pRank":31,"nSamples":50,"individualID.1":13,"individualID.2":26,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":4111,"infectionDiff":3436,"infectionDiffY":9.4137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"013_027","label":"SNPs","pAvg":0.00463,"pSD":0.00134,"pScaled":0.00165,"pRank":68,"nSamples":50,"individualID.1":13,"individualID.2":27,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":4283,"infectionDiff":4025,"infectionDiffY":11.0274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_028","label":"SNPs","pAvg":0.00598,"pSD":0.00147,"pScaled":0.00167,"pRank":45,"nSamples":50,"individualID.1":13,"individualID.2":28,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":3500,"infectionDiff":2850,"infectionDiffY":7.80822,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"013_029","label":"SNPs","pAvg":0.00838,"pSD":0.00321,"pScaled":0.02069,"pRank":13,"nSamples":500,"individualID.1":13,"individualID.2":29,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1990-12-27 23:28:20","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1992-03-01 23:20:54","sampleDiff":1676,"infectionDiff":1375,"infectionDiffY":3.76712,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_030","label":"SNPs","pAvg":0.0081,"pSD":0.00211,"pScaled":0.00567,"pRank":19,"nSamples":50,"individualID.1":13,"individualID.2":30,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":1751,"infectionDiff":1856,"infectionDiffY":5.08493,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"013_031","label":"SNPs","pAvg":0.01261,"pSD":0.00464,"pScaled":0.0208,"pRank":13,"nSamples":500,"individualID.1":13,"individualID.2":31,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1991-01-03 16:49:07","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1991-07-17 03:37:35","sampleDiff":1447,"infectionDiff":1382,"infectionDiffY":3.7863,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"013_032","label":"SNPs","pAvg":0.01257,"pSD":0.0051,"pScaled":0.00857,"pRank":16,"nSamples":50,"individualID.1":13,"individualID.2":32,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":3181,"infectionDiff":1802,"infectionDiffY":4.93699,"timeCat":"5","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"013_033","label":"SNPs","pAvg":0.00643,"pSD":0.00209,"pScaled":0.00293,"pRank":28,"nSamples":50,"individualID.1":13,"individualID.2":33,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":3728,"infectionDiff":3707,"infectionDiffY":10.15616,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"013_034","label":"SNPs","pAvg":0.00302,"pSD":0.00125,"pScaled":0.01016,"pRank":13,"nSamples":500,"individualID.1":13,"individualID.2":34,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":2750,"infectionDiff":1421,"infectionDiffY":3.89315,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"013_035","label":"SNPs","pAvg":0.00781,"pSD":0.00196,"pScaled":0.00203,"pRank":37,"nSamples":50,"individualID.1":13,"individualID.2":35,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":3690,"infectionDiff":2504,"infectionDiffY":6.86027,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"013_036","label":"SNPs","pAvg":0.00699,"pSD":0.00181,"pScaled":0.00189,"pRank":53,"nSamples":50,"individualID.1":13,"individualID.2":36,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":3489,"infectionDiff":3315,"infectionDiffY":9.08219,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"013_037","label":"SNPs","pAvg":0.00996,"pSD":0.00314,"pScaled":0.01004,"pRank":27,"nSamples":500,"individualID.1":13,"individualID.2":37,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":3876,"infectionDiff":2837,"infectionDiffY":7.7726,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"013_038","label":"SNPs","pAvg":0.00751,"pSD":0.00211,"pScaled":0.00891,"pRank":23,"nSamples":500,"individualID.1":13,"individualID.2":38,"transmission":false,"snpDist":9,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":2938,"infectionDiff":2482,"infectionDiffY":6.8,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"013_039","label":"SNPs","pAvg":0.00751,"pSD":0.00211,"pScaled":0.0162,"pRank":15,"nSamples":500,"individualID.1":13,"individualID.2":39,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":3103,"infectionDiff":1928,"infectionDiffY":5.28219,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"013_040","label":"SNPs","pAvg":0.00386,"pSD":0.00113,"pScaled":0.00346,"pRank":55,"nSamples":500,"individualID.1":13,"individualID.2":40,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":3512,"infectionDiff":3571,"infectionDiffY":9.78356,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_041","label":"SNPs","pAvg":0.00631,"pSD":0.00303,"pScaled":0.01639,"pRank":17,"nSamples":500,"individualID.1":13,"individualID.2":41,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":4361,"infectionDiff":1772,"infectionDiffY":4.85479,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"013_042","label":"SNPs","pAvg":0.00836,"pSD":0.00337,"pScaled":0.00309,"pRank":16,"nSamples":50,"individualID.1":13,"individualID.2":42,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":1765,"infectionDiff":1423,"infectionDiffY":3.89863,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_043","label":"SNPs","pAvg":0.01121,"pSD":0.00247,"pScaled":0.01513,"pRank":18,"nSamples":500,"individualID.1":13,"individualID.2":43,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":4486,"infectionDiff":2190,"infectionDiffY":6,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"013_044","label":"SNPs","pAvg":0.00583,"pSD":0.00134,"pScaled":0.00157,"pRank":24,"nSamples":50,"individualID.1":13,"individualID.2":44,"transmission":false,"snpDist":3,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":2107,"infectionDiff":2091,"infectionDiffY":5.72877,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"013_045","label":"SNPs","pAvg":0.01817,"pSD":0.00508,"pScaled":0.011,"pRank":17,"nSamples":50,"individualID.1":13,"individualID.2":45,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":3885,"infectionDiff":3082,"infectionDiffY":8.44384,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"013_046","label":"SNPs","pAvg":0.01064,"pSD":0.00331,"pScaled":0.00616,"pRank":19,"nSamples":50,"individualID.1":13,"individualID.2":46,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":2790,"infectionDiff":2036,"infectionDiffY":5.57808,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"013_047","label":"SNPs","pAvg":0.01288,"pSD":0.00294,"pScaled":0.00278,"pRank":30,"nSamples":50,"individualID.1":13,"individualID.2":47,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":2736,"infectionDiff":2768,"infectionDiffY":7.58356,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"013_048","label":"SNPs","pAvg":0.022,"pSD":0.00491,"pScaled":0.0097,"pRank":10,"nSamples":50,"individualID.1":13,"individualID.2":48,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":3019,"infectionDiff":2302,"infectionDiffY":6.30685,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"013_049","label":"SNPs","pAvg":0.00398,"pSD":0.00117,"pScaled":0.00261,"pRank":26,"nSamples":50,"individualID.1":13,"individualID.2":49,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":2754,"infectionDiff":1920,"infectionDiffY":5.26027,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_050","label":"SNPs","pAvg":0.00154,"pSD":0.00076,"pScaled":0.00672,"pRank":17,"nSamples":500,"individualID.1":13,"individualID.2":50,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":2609,"infectionDiff":1592,"infectionDiffY":4.36164,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"013_051","label":"SNPs","pAvg":0.01178,"pSD":0.00302,"pScaled":0.00558,"pRank":32,"nSamples":50,"individualID.1":13,"individualID.2":51,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":2523,"infectionDiff":2559,"infectionDiffY":7.01096,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"013_052","label":"SNPs","pAvg":0.00758,"pSD":0.00206,"pScaled":0.00284,"pRank":41,"nSamples":50,"individualID.1":13,"individualID.2":52,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":4356,"infectionDiff":3587,"infectionDiffY":9.8274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"013_053","label":"SNPs","pAvg":0.00637,"pSD":0.00196,"pScaled":0.00426,"pRank":25,"nSamples":50,"individualID.1":13,"individualID.2":53,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":3043,"infectionDiff":3051,"infectionDiffY":8.3589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"013_054","label":"SNPs","pAvg":0.00676,"pSD":0.00206,"pScaled":0.00176,"pRank":32,"nSamples":50,"individualID.1":13,"individualID.2":54,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":4214,"infectionDiff":3976,"infectionDiffY":10.89315,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"013_055","label":"SNPs","pAvg":0.00761,"pSD":0.0021,"pScaled":0.00234,"pRank":26,"nSamples":50,"individualID.1":13,"individualID.2":55,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":3197,"infectionDiff":3243,"infectionDiffY":8.88493,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"013_056","label":"SNPs","pAvg":0.00804,"pSD":0.00244,"pScaled":0.00192,"pRank":29,"nSamples":50,"individualID.1":13,"individualID.2":56,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":3621,"infectionDiff":3328,"infectionDiffY":9.11781,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"013_057","label":"SNPs","pAvg":0.00751,"pSD":0.00203,"pScaled":0.0015,"pRank":36,"nSamples":50,"individualID.1":13,"individualID.2":57,"transmission":false,"snpDist":9,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":4184,"infectionDiff":3978,"infectionDiffY":10.89863,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"013_058","label":"SNPs","pAvg":0.00751,"pSD":0.00211,"pScaled":0.00741,"pRank":38,"nSamples":500,"individualID.1":13,"individualID.2":58,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":4469,"infectionDiff":3666,"infectionDiffY":10.04384,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"013_059","label":"SNPs","pAvg":0.01297,"pSD":0.00317,"pScaled":0.01865,"pRank":18,"nSamples":500,"individualID.1":13,"individualID.2":59,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":3849,"infectionDiff":2130,"infectionDiffY":5.83562,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"013_060","label":"SNPs","pAvg":0.00415,"pSD":0.00126,"pScaled":0.00201,"pRank":57,"nSamples":50,"individualID.1":13,"individualID.2":60,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":4511,"infectionDiff":4308,"infectionDiffY":11.80274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_061","label":"SNPs","pAvg":0.00445,"pSD":0.00123,"pScaled":0.00845,"pRank":25,"nSamples":500,"individualID.1":13,"individualID.2":61,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":4304,"infectionDiff":3526,"infectionDiffY":9.66027,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_062","label":"SNPs","pAvg":0.01297,"pSD":0.00302,"pScaled":0.00343,"pRank":25,"nSamples":50,"individualID.1":13,"individualID.2":62,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":3039,"infectionDiff":2431,"infectionDiffY":6.66027,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"013_063","label":"SNPs","pAvg":0.00159,"pSD":0.00052,"pScaled":0.00076,"pRank":31,"nSamples":50,"individualID.1":13,"individualID.2":63,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":2470,"infectionDiff":2225,"infectionDiffY":6.09589,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"013_064","label":"SNPs","pAvg":0.01008,"pSD":0.00308,"pScaled":0.00383,"pRank":14,"nSamples":50,"individualID.1":13,"individualID.2":64,"transmission":false,"snpDist":9,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":3253,"infectionDiff":3207,"infectionDiffY":8.7863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"013_065","label":"SNPs","pAvg":0.00453,"pSD":0.00116,"pScaled":0.00349,"pRank":24,"nSamples":50,"individualID.1":13,"individualID.2":65,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":3261,"infectionDiff":3140,"infectionDiffY":8.60274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_066","label":"SNPs","pAvg":0.00602,"pSD":0.0016,"pScaled":0.00159,"pRank":31,"nSamples":50,"individualID.1":13,"individualID.2":66,"transmission":false,"snpDist":9,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":3408,"infectionDiff":3287,"infectionDiffY":9.00548,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"013_067","label":"SNPs","pAvg":0.00806,"pSD":0.00229,"pScaled":0.00203,"pRank":51,"nSamples":50,"individualID.1":13,"individualID.2":67,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":4530,"infectionDiff":4372,"infectionDiffY":11.97808,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"013_068","label":"SNPs","pAvg":0.00651,"pSD":0.00155,"pScaled":0.00142,"pRank":57,"nSamples":50,"individualID.1":13,"individualID.2":68,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":4136,"infectionDiff":4024,"infectionDiffY":11.02466,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"013_069","label":"SNPs","pAvg":0.00384,"pSD":0.00119,"pScaled":0.00123,"pRank":43,"nSamples":50,"individualID.1":13,"individualID.2":69,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":4181,"infectionDiff":4051,"infectionDiffY":11.09863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_070","label":"SNPs","pAvg":0.00452,"pSD":0.0014,"pScaled":0.0014,"pRank":36,"nSamples":50,"individualID.1":13,"individualID.2":70,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":2717,"infectionDiff":2469,"infectionDiffY":6.76438,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_071","label":"SNPs","pAvg":0.00445,"pSD":0.00123,"pScaled":0.00453,"pRank":31,"nSamples":500,"individualID.1":13,"individualID.2":71,"transmission":false,"snpDist":9,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":4236,"infectionDiff":2727,"infectionDiffY":7.47123,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_072","label":"SNPs","pAvg":0.00279,"pSD":0.00102,"pScaled":0.00085,"pRank":35,"nSamples":50,"individualID.1":13,"individualID.2":72,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":2677,"infectionDiff":2646,"infectionDiffY":7.24932,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"013_073","label":"SNPs","pAvg":0.00182,"pSD":0.00058,"pScaled":0.00134,"pRank":40,"nSamples":50,"individualID.1":13,"individualID.2":73,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":3758,"infectionDiff":3397,"infectionDiffY":9.30685,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"013_074","label":"SNPs","pAvg":0.00152,"pSD":0.0005,"pScaled":0.00083,"pRank":32,"nSamples":50,"individualID.1":13,"individualID.2":74,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":3598,"infectionDiff":2777,"infectionDiffY":7.60822,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"013_075","label":"SNPs","pAvg":0.00015,"pSD":0.00048,"pScaled":0.00064,"pRank":89,"nSamples":500,"individualID.1":13,"individualID.2":75,"transmission":false,"snpDist":12,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":4264,"infectionDiff":4351,"infectionDiffY":11.92055,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"013_076","label":"SNPs","pAvg":0.01259,"pSD":0.00393,"pScaled":0.00309,"pRank":32,"nSamples":50,"individualID.1":13,"individualID.2":76,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":4499,"infectionDiff":4024,"infectionDiffY":11.02466,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"013_077","label":"SNPs","pAvg":0.00731,"pSD":0.00201,"pScaled":0.00162,"pRank":39,"nSamples":50,"individualID.1":13,"individualID.2":77,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":3652,"infectionDiff":3739,"infectionDiffY":10.24384,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"013_078","label":"SNPs","pAvg":0.00377,"pSD":0.00101,"pScaled":0.00083,"pRank":78,"nSamples":50,"individualID.1":13,"individualID.2":78,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":4343,"infectionDiff":4052,"infectionDiffY":11.10137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_079","label":"SNPs","pAvg":0.00169,"pSD":0.0005,"pScaled":0.00085,"pRank":44,"nSamples":50,"individualID.1":13,"individualID.2":79,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":3751,"infectionDiff":3336,"infectionDiffY":9.13973,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"013_080","label":"SNPs","pAvg":0.0024,"pSD":0.00069,"pScaled":0.01756,"pRank":8,"nSamples":500,"individualID.1":13,"individualID.2":80,"transmission":false,"snpDist":9,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":3760,"infectionDiff":3268,"infectionDiffY":8.95342,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"013_081","label":"SNPs","pAvg":0.00205,"pSD":0.00065,"pScaled":0.00051,"pRank":74,"nSamples":50,"individualID.1":13,"individualID.2":81,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":4476,"infectionDiff":4435,"infectionDiffY":12.15068,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"013_082","label":"SNPs","pAvg":0.00433,"pSD":0.00121,"pScaled":0.00094,"pRank":75,"nSamples":50,"individualID.1":13,"individualID.2":82,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":4480,"infectionDiff":4512,"infectionDiffY":12.36164,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_083","label":"SNPs","pAvg":0.00695,"pSD":0.00199,"pScaled":0.0027,"pRank":49,"nSamples":50,"individualID.1":13,"individualID.2":83,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":4256,"infectionDiff":3982,"infectionDiffY":10.90959,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"013_084","label":"SNPs","pAvg":0.00169,"pSD":0.00056,"pScaled":0.00085,"pRank":30,"nSamples":50,"individualID.1":13,"individualID.2":84,"transmission":false,"snpDist":9,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":4499,"infectionDiff":4030,"infectionDiffY":11.0411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"013_085","label":"SNPs","pAvg":0.00141,"pSD":0.00046,"pScaled":0.00048,"pRank":38,"nSamples":50,"individualID.1":13,"individualID.2":85,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":3611,"infectionDiff":3695,"infectionDiffY":10.12329,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"013_086","label":"SNPs","pAvg":0.00391,"pSD":0.00107,"pScaled":0.00125,"pRank":30,"nSamples":50,"individualID.1":13,"individualID.2":86,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":3449,"infectionDiff":3323,"infectionDiffY":9.10411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_087","label":"SNPs","pAvg":0.00656,"pSD":0.00169,"pScaled":0.00535,"pRank":9,"nSamples":50,"individualID.1":13,"individualID.2":87,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":3984,"infectionDiff":3862,"infectionDiffY":10.58082,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"013_088","label":"SNPs","pAvg":0.00379,"pSD":0.00115,"pScaled":0.00073,"pRank":75,"nSamples":50,"individualID.1":13,"individualID.2":88,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":4093,"infectionDiff":4197,"infectionDiffY":11.49863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_089","label":"SNPs","pAvg":0.00155,"pSD":0.00056,"pScaled":0.0005,"pRank":39,"nSamples":50,"individualID.1":13,"individualID.2":89,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":4385,"infectionDiff":4033,"infectionDiffY":11.04932,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"013_090","label":"SNPs","pAvg":0.00153,"pSD":0.0005,"pScaled":0.0004,"pRank":57,"nSamples":50,"individualID.1":13,"individualID.2":90,"transmission":false,"snpDist":9,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":4456,"infectionDiff":4260,"infectionDiffY":11.67123,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"013_091","label":"SNPs","pAvg":0.004,"pSD":0.00106,"pScaled":0.00201,"pRank":27,"nSamples":50,"individualID.1":13,"individualID.2":91,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":4477,"infectionDiff":3851,"infectionDiffY":10.55068,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_092","label":"SNPs","pAvg":0.00168,"pSD":0.00049,"pScaled":0.00068,"pRank":30,"nSamples":50,"individualID.1":13,"individualID.2":92,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":4524,"infectionDiff":4002,"infectionDiffY":10.96438,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"013_093","label":"SNPs","pAvg":0.00238,"pSD":0.00073,"pScaled":0.00065,"pRank":34,"nSamples":50,"individualID.1":13,"individualID.2":93,"transmission":false,"snpDist":9,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":4361,"infectionDiff":4228,"infectionDiffY":11.58356,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"013_094","label":"SNPs","pAvg":0.00425,"pSD":0.0012,"pScaled":0.0014,"pRank":39,"nSamples":50,"individualID.1":13,"individualID.2":94,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":4407,"infectionDiff":4499,"infectionDiffY":12.32603,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_095","label":"SNPs","pAvg":0.00655,"pSD":0.00185,"pScaled":0.00333,"pRank":10,"nSamples":50,"individualID.1":13,"individualID.2":95,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":3989,"infectionDiff":3931,"infectionDiffY":10.76986,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"013_096","label":"SNPs","pAvg":0.00428,"pSD":0.00132,"pScaled":0.0015,"pRank":30,"nSamples":50,"individualID.1":13,"individualID.2":96,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":4084,"infectionDiff":4163,"infectionDiffY":11.40548,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_097","label":"SNPs","pAvg":0.00406,"pSD":0.00112,"pScaled":0.00091,"pRank":57,"nSamples":50,"individualID.1":13,"individualID.2":97,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":4327,"infectionDiff":4319,"infectionDiffY":11.83288,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_098","label":"SNPs","pAvg":0.00144,"pSD":0.00051,"pScaled":0.00041,"pRank":46,"nSamples":50,"individualID.1":13,"individualID.2":98,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":4146,"infectionDiff":4092,"infectionDiffY":11.21096,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"013_099","label":"SNPs","pAvg":0.00449,"pSD":0.00117,"pScaled":0.00153,"pRank":33,"nSamples":50,"individualID.1":13,"individualID.2":99,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":4128,"infectionDiff":3956,"infectionDiffY":10.83836,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"013_100","label":"SNPs","pAvg":0.01515,"pSD":0.00416,"pScaled":0.00446,"pRank":29,"nSamples":50,"individualID.1":13,"individualID.2":100,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-23 16:58:33","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1987-07-30 23:29:57","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":4328,"infectionDiff":4334,"infectionDiffY":11.87397,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"014_009","label":"SNPs","pAvg":0.00205,"pSD":0.00633,"pScaled":0.00914,"pRank":29,"nSamples":500,"individualID.1":14,"individualID.2":9,"transmission":false,"snpDist":11,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":1969,"infectionDiff":422,"infectionDiffY":1.15616,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"014_018","label":"SNPs","pAvg":0.04453,"pSD":0.00951,"pScaled":0.05047,"pRank":5,"nSamples":500,"individualID.1":14,"individualID.2":18,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":-107,"infectionDiff":196,"infectionDiffY":0.53699,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"014_021","label":"SNPs","pAvg":0.09407,"pSD":0.01546,"pScaled":0.08979,"pRank":1,"nSamples":500,"individualID.1":14,"individualID.2":21,"transmission":true,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":1338,"infectionDiff":194,"infectionDiffY":0.53151,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"014_023","label":"SNPs","pAvg":0.01546,"pSD":0.00395,"pScaled":0.00688,"pRank":24,"nSamples":50,"individualID.1":14,"individualID.2":23,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":2126,"infectionDiff":1961,"infectionDiffY":5.3726,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"014_026","label":"SNPs","pAvg":0.74761,"pSD":0.42944,"pScaled":0.26261,"pRank":2,"nSamples":194,"individualID.1":14,"individualID.2":26,"transmission":false,"snpDist":2,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1730,"infectionDiff":1258,"infectionDiffY":3.44658,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"014_027","label":"SNPs","pAvg":0.01764,"pSD":0.00446,"pScaled":0.0063,"pRank":19,"nSamples":50,"individualID.1":14,"individualID.2":27,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1903,"infectionDiff":1848,"infectionDiffY":5.06301,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"014_028","label":"SNPs","pAvg":0.77958,"pSD":0.39775,"pScaled":0.21775,"pRank":2,"nSamples":212,"individualID.1":14,"individualID.2":28,"transmission":false,"snpDist":1,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":1120,"infectionDiff":672,"infectionDiffY":1.8411,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"1","snpClose":true} {"pairID":"014_033","label":"SNPs","pAvg":0.00373,"pSD":0.00169,"pScaled":0.0017,"pRank":50,"nSamples":50,"individualID.1":14,"individualID.2":33,"transmission":false,"snpDist":8,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":1347,"infectionDiff":1529,"infectionDiffY":4.18904,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"014_035","label":"SNPs","pAvg":0.04532,"pSD":0.00922,"pScaled":0.01178,"pRank":12,"nSamples":50,"individualID.1":14,"individualID.2":35,"transmission":false,"snpDist":5,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":1310,"infectionDiff":327,"infectionDiffY":0.89589,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"014_036","label":"SNPs","pAvg":0.03795,"pSD":0.00995,"pScaled":0.01026,"pRank":15,"nSamples":50,"individualID.1":14,"individualID.2":36,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":1109,"infectionDiff":1137,"infectionDiffY":3.11507,"timeCat":"4","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"014_037","label":"SNPs","pAvg":0.04242,"pSD":0.00977,"pScaled":0.04278,"pRank":8,"nSamples":500,"individualID.1":14,"individualID.2":37,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":1496,"infectionDiff":660,"infectionDiffY":1.80822,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"014_038","label":"SNPs","pAvg":0.05833,"pSD":0.0121,"pScaled":0.06926,"pRank":5,"nSamples":500,"individualID.1":14,"individualID.2":38,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":558,"infectionDiff":304,"infectionDiffY":0.83288,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"014_040","label":"SNPs","pAvg":0.03091,"pSD":0.00824,"pScaled":0.02765,"pRank":9,"nSamples":500,"individualID.1":14,"individualID.2":40,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":1131,"infectionDiff":1393,"infectionDiffY":3.81644,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"014_043","label":"SNPs","pAvg":0.04747,"pSD":0.01034,"pScaled":0.06407,"pRank":5,"nSamples":500,"individualID.1":14,"individualID.2":43,"transmission":false,"snpDist":9,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":2106,"infectionDiff":13,"infectionDiffY":0.03562,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"014_045","label":"SNPs","pAvg":0.01659,"pSD":0.00449,"pScaled":0.01004,"pRank":18,"nSamples":50,"individualID.1":14,"individualID.2":45,"transmission":false,"snpDist":9,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":1505,"infectionDiff":904,"infectionDiffY":2.47671,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"014_047","label":"SNPs","pAvg":0.04298,"pSD":0.00996,"pScaled":0.00927,"pRank":15,"nSamples":50,"individualID.1":14,"individualID.2":47,"transmission":false,"snpDist":7,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":356,"infectionDiff":590,"infectionDiffY":1.61644,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"014_048","label":"SNPs","pAvg":0.03273,"pSD":0.00785,"pScaled":0.01443,"pRank":9,"nSamples":50,"individualID.1":14,"individualID.2":48,"transmission":false,"snpDist":8,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":639,"infectionDiff":124,"infectionDiffY":0.33973,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"014_051","label":"SNPs","pAvg":0.03761,"pSD":0.0079,"pScaled":0.01781,"pRank":13,"nSamples":50,"individualID.1":14,"individualID.2":51,"transmission":false,"snpDist":6,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":143,"infectionDiff":382,"infectionDiffY":1.04658,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"014_052","label":"SNPs","pAvg":0.02174,"pSD":0.00591,"pScaled":0.00816,"pRank":16,"nSamples":50,"individualID.1":14,"individualID.2":52,"transmission":false,"snpDist":7,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1975,"infectionDiff":1409,"infectionDiffY":3.86027,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"014_053","label":"SNPs","pAvg":0.03118,"pSD":0.00928,"pScaled":0.02082,"pRank":9,"nSamples":50,"individualID.1":14,"individualID.2":53,"transmission":false,"snpDist":9,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":663,"infectionDiff":874,"infectionDiffY":2.39452,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"014_054","label":"SNPs","pAvg":0.00448,"pSD":0.00188,"pScaled":0.00117,"pRank":52,"nSamples":50,"individualID.1":14,"individualID.2":54,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1834,"infectionDiff":1798,"infectionDiffY":4.92603,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"014_055","label":"SNPs","pAvg":0.02657,"pSD":0.00846,"pScaled":0.00816,"pRank":9,"nSamples":50,"individualID.1":14,"individualID.2":55,"transmission":false,"snpDist":9,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":817,"infectionDiff":1066,"infectionDiffY":2.92055,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"014_056","label":"SNPs","pAvg":0.02198,"pSD":0.00654,"pScaled":0.00525,"pRank":14,"nSamples":50,"individualID.1":14,"individualID.2":56,"transmission":false,"snpDist":9,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":1241,"infectionDiff":1150,"infectionDiffY":3.15068,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"014_057","label":"SNPs","pAvg":0.01009,"pSD":0.00439,"pScaled":0.00202,"pRank":26,"nSamples":50,"individualID.1":14,"individualID.2":57,"transmission":false,"snpDist":10,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1804,"infectionDiff":1800,"infectionDiffY":4.93151,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"014_058","label":"SNPs","pAvg":0.00974,"pSD":0.00398,"pScaled":0.00961,"pRank":30,"nSamples":500,"individualID.1":14,"individualID.2":58,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":2089,"infectionDiff":1489,"infectionDiffY":4.07945,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"014_060","label":"SNPs","pAvg":0.01495,"pSD":0.00342,"pScaled":0.00724,"pRank":23,"nSamples":50,"individualID.1":14,"individualID.2":60,"transmission":false,"snpDist":9,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":2130,"infectionDiff":2131,"infectionDiffY":5.83836,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"014_061","label":"SNPs","pAvg":0.004,"pSD":0.00132,"pScaled":0.00759,"pRank":29,"nSamples":500,"individualID.1":14,"individualID.2":61,"transmission":false,"snpDist":8,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1923,"infectionDiff":1349,"infectionDiffY":3.69589,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"014_062","label":"SNPs","pAvg":0.05499,"pSD":0.01156,"pScaled":0.01456,"pRank":10,"nSamples":50,"individualID.1":14,"individualID.2":62,"transmission":false,"snpDist":7,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":658,"infectionDiff":253,"infectionDiffY":0.69315,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"014_063","label":"SNPs","pAvg":0.05856,"pSD":0.01336,"pScaled":0.02818,"pRank":3,"nSamples":50,"individualID.1":14,"individualID.2":63,"transmission":false,"snpDist":8,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":90,"infectionDiff":48,"infectionDiffY":0.13151,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"014_064","label":"SNPs","pAvg":0.01677,"pSD":0.00477,"pScaled":0.00637,"pRank":11,"nSamples":50,"individualID.1":14,"individualID.2":64,"transmission":false,"snpDist":10,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":873,"infectionDiff":1030,"infectionDiffY":2.82192,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"014_065","label":"SNPs","pAvg":0.01304,"pSD":0.00422,"pScaled":0.01006,"pRank":12,"nSamples":50,"individualID.1":14,"individualID.2":65,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":881,"infectionDiff":963,"infectionDiffY":2.63836,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"014_066","label":"SNPs","pAvg":0.03368,"pSD":0.0091,"pScaled":0.00889,"pRank":7,"nSamples":50,"individualID.1":14,"individualID.2":66,"transmission":false,"snpDist":10,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":1028,"infectionDiff":1109,"infectionDiffY":3.03836,"timeCat":"4","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"014_067","label":"SNPs","pAvg":0.01022,"pSD":0.00222,"pScaled":0.00258,"pRank":40,"nSamples":50,"individualID.1":14,"individualID.2":67,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":2150,"infectionDiff":2195,"infectionDiffY":6.0137,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"014_068","label":"SNPs","pAvg":0.00913,"pSD":0.00239,"pScaled":0.002,"pRank":42,"nSamples":50,"individualID.1":14,"individualID.2":68,"transmission":false,"snpDist":6,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":1756,"infectionDiff":1846,"infectionDiffY":5.05753,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"014_069","label":"SNPs","pAvg":0.00148,"pSD":0.00045,"pScaled":0.00047,"pRank":68,"nSamples":50,"individualID.1":14,"individualID.2":69,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1800,"infectionDiff":1873,"infectionDiffY":5.13151,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"014_070","label":"SNPs","pAvg":0.09311,"pSD":0.01301,"pScaled":0.02883,"pRank":4,"nSamples":50,"individualID.1":14,"individualID.2":70,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":337,"infectionDiff":291,"infectionDiffY":0.79726,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"014_071","label":"SNPs","pAvg":0.07507,"pSD":0.01844,"pScaled":0.07638,"pRank":3,"nSamples":500,"individualID.1":14,"individualID.2":71,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":1856,"infectionDiff":550,"infectionDiffY":1.50685,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"014_072","label":"SNPs","pAvg":0.02067,"pSD":0.00447,"pScaled":0.00629,"pRank":15,"nSamples":50,"individualID.1":14,"individualID.2":72,"transmission":false,"snpDist":8,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":297,"infectionDiff":469,"infectionDiffY":1.28493,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"014_073","label":"SNPs","pAvg":0.00765,"pSD":0.00284,"pScaled":0.00563,"pRank":16,"nSamples":50,"individualID.1":14,"individualID.2":73,"transmission":false,"snpDist":8,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":1378,"infectionDiff":1220,"infectionDiffY":3.34247,"timeCat":"4","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"014_074","label":"SNPs","pAvg":0.00814,"pSD":0.00215,"pScaled":0.00447,"pRank":9,"nSamples":50,"individualID.1":14,"individualID.2":74,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":1218,"infectionDiff":600,"infectionDiffY":1.64384,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"014_075","label":"SNPs","pAvg":0.00031,"pSD":0.00095,"pScaled":0.00133,"pRank":67,"nSamples":500,"individualID.1":14,"individualID.2":75,"transmission":false,"snpDist":13,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1884,"infectionDiff":2173,"infectionDiffY":5.95342,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"014_076","label":"SNPs","pAvg":0.00418,"pSD":0.00087,"pScaled":0.00102,"pRank":65,"nSamples":50,"individualID.1":14,"individualID.2":76,"transmission":false,"snpDist":6,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":2119,"infectionDiff":1846,"infectionDiffY":5.05753,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"014_077","label":"SNPs","pAvg":0.00513,"pSD":0.0021,"pScaled":0.00114,"pRank":50,"nSamples":50,"individualID.1":14,"individualID.2":77,"transmission":false,"snpDist":5,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":1272,"infectionDiff":1562,"infectionDiffY":4.27945,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"014_078","label":"SNPs","pAvg":0.01475,"pSD":0.0034,"pScaled":0.00327,"pRank":33,"nSamples":50,"individualID.1":14,"individualID.2":78,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1962,"infectionDiff":1875,"infectionDiffY":5.13699,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"014_079","label":"SNPs","pAvg":0.01054,"pSD":0.00381,"pScaled":0.0053,"pRank":13,"nSamples":50,"individualID.1":14,"individualID.2":79,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":1371,"infectionDiff":1158,"infectionDiffY":3.1726,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"014_080","label":"SNPs","pAvg":0.00673,"pSD":0.00205,"pScaled":0.04919,"pRank":3,"nSamples":500,"individualID.1":14,"individualID.2":80,"transmission":false,"snpDist":10,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":1380,"infectionDiff":1090,"infectionDiffY":2.9863,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"014_081","label":"SNPs","pAvg":0.00329,"pSD":0.00116,"pScaled":0.00082,"pRank":58,"nSamples":50,"individualID.1":14,"individualID.2":81,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":2096,"infectionDiff":2257,"infectionDiffY":6.18356,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"014_082","label":"SNPs","pAvg":0.00868,"pSD":0.00217,"pScaled":0.00189,"pRank":37,"nSamples":50,"individualID.1":14,"individualID.2":82,"transmission":false,"snpDist":7,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":2100,"infectionDiff":2334,"infectionDiffY":6.39452,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"014_083","label":"SNPs","pAvg":0.00938,"pSD":0.00473,"pScaled":0.00365,"pRank":35,"nSamples":50,"individualID.1":14,"individualID.2":83,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1875,"infectionDiff":1804,"infectionDiffY":4.94247,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"014_084","label":"SNPs","pAvg":0.00055,"pSD":0.00171,"pScaled":0.00028,"pRank":54,"nSamples":500,"individualID.1":14,"individualID.2":84,"transmission":false,"snpDist":12,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":2119,"infectionDiff":1852,"infectionDiffY":5.07397,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"014_085","label":"SNPs","pAvg":0.00402,"pSD":0.00172,"pScaled":0.00138,"pRank":21,"nSamples":50,"individualID.1":14,"individualID.2":85,"transmission":false,"snpDist":10,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":1231,"infectionDiff":1517,"infectionDiffY":4.15616,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"014_086","label":"SNPs","pAvg":0.00343,"pSD":0.00134,"pScaled":0.00109,"pRank":32,"nSamples":50,"individualID.1":14,"individualID.2":86,"transmission":false,"snpDist":7,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":1069,"infectionDiff":1145,"infectionDiffY":3.13699,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"014_087","label":"SNPs","pAvg":0.00021,"pSD":0.00069,"pScaled":0.00017,"pRank":64,"nSamples":500,"individualID.1":14,"individualID.2":87,"transmission":false,"snpDist":11,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":1603,"infectionDiff":1685,"infectionDiffY":4.61644,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"014_088","label":"SNPs","pAvg":0.00766,"pSD":0.00224,"pScaled":0.00148,"pRank":43,"nSamples":50,"individualID.1":14,"individualID.2":88,"transmission":false,"snpDist":6,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":1713,"infectionDiff":2020,"infectionDiffY":5.53425,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"014_089","label":"SNPs","pAvg":0.00047,"pSD":0.00145,"pScaled":0.00015,"pRank":67,"nSamples":500,"individualID.1":14,"individualID.2":89,"transmission":false,"snpDist":11,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":2005,"infectionDiff":1856,"infectionDiffY":5.08493,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"014_090","label":"SNPs","pAvg":0.00471,"pSD":0.00093,"pScaled":0.00122,"pRank":28,"nSamples":50,"individualID.1":14,"individualID.2":90,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":2075,"infectionDiff":2082,"infectionDiffY":5.70411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"014_091","label":"SNPs","pAvg":0.00077,"pSD":0.00258,"pScaled":0.00038,"pRank":59,"nSamples":500,"individualID.1":14,"individualID.2":91,"transmission":false,"snpDist":11,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":2096,"infectionDiff":1673,"infectionDiffY":4.58356,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"014_092","label":"SNPs","pAvg":0.00052,"pSD":0.00171,"pScaled":0.00021,"pRank":58,"nSamples":500,"individualID.1":14,"individualID.2":92,"transmission":false,"snpDist":11,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":2143,"infectionDiff":1825,"infectionDiffY":5,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"014_093","label":"SNPs","pAvg":0.00051,"pSD":0.00158,"pScaled":0.00014,"pRank":74,"nSamples":500,"individualID.1":14,"individualID.2":93,"transmission":false,"snpDist":12,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1980,"infectionDiff":2050,"infectionDiffY":5.61644,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"014_094","label":"SNPs","pAvg":0.00409,"pSD":0.00099,"pScaled":0.00135,"pRank":40,"nSamples":50,"individualID.1":14,"individualID.2":94,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":2026,"infectionDiff":2322,"infectionDiffY":6.36164,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"014_095","label":"SNPs","pAvg":0.00021,"pSD":0.00073,"pScaled":0.00011,"pRank":64,"nSamples":500,"individualID.1":14,"individualID.2":95,"transmission":false,"snpDist":11,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":1609,"infectionDiff":1754,"infectionDiffY":4.80548,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"014_096","label":"SNPs","pAvg":0.00198,"pSD":0.00056,"pScaled":0.00069,"pRank":43,"nSamples":50,"individualID.1":14,"individualID.2":96,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":1704,"infectionDiff":1986,"infectionDiffY":5.4411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"014_097","label":"SNPs","pAvg":0.00837,"pSD":0.00217,"pScaled":0.00188,"pRank":29,"nSamples":50,"individualID.1":14,"individualID.2":97,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1946,"infectionDiff":2142,"infectionDiffY":5.86849,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"014_098","label":"SNPs","pAvg":0.00091,"pSD":0.00277,"pScaled":0.00026,"pRank":60,"nSamples":500,"individualID.1":14,"individualID.2":98,"transmission":false,"snpDist":11,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":1765,"infectionDiff":1915,"infectionDiffY":5.24658,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"014_099","label":"SNPs","pAvg":0.00352,"pSD":0.00152,"pScaled":0.0012,"pRank":35,"nSamples":50,"individualID.1":14,"individualID.2":99,"transmission":false,"snpDist":8,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":1748,"infectionDiff":1779,"infectionDiffY":4.87397,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"014_100","label":"SNPs","pAvg":0.00547,"pSD":0.00121,"pScaled":0.00161,"pRank":58,"nSamples":50,"individualID.1":14,"individualID.2":100,"transmission":false,"infectionDate.1":"1993-03-09 06:48:20","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1994-02-04 09:31:30","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1947,"infectionDiff":2157,"infectionDiffY":5.90959,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"015_003","label":"SNPs","pAvg":0.036,"pSD":0.01073,"pScaled":0.11357,"pRank":3,"nSamples":500,"individualID.1":15,"individualID.2":3,"transmission":false,"snpDist":9,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1990-12-11 19:24:08","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1998-10-30 22:42:57","sampleDiff":2268,"infectionDiff":843,"infectionDiffY":2.30959,"timeCat":"3","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"015_006","label":"SNPs","pAvg":0.0188,"pSD":0.0054,"pScaled":0.01201,"pRank":12,"nSamples":50,"individualID.1":15,"individualID.2":6,"transmission":false,"snpDist":5,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":-16,"infectionDiff":1401,"infectionDiffY":3.83836,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"015_009","label":"SNPs","pAvg":0.00046,"pSD":0.00141,"pScaled":0.00203,"pRank":42,"nSamples":500,"individualID.1":15,"individualID.2":9,"transmission":false,"snpDist":11,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":2507,"infectionDiff":2084,"infectionDiffY":5.70959,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"015_010","label":"SNPs","pAvg":0.01783,"pSD":0.00479,"pScaled":0.01292,"pRank":13,"nSamples":50,"individualID.1":15,"individualID.2":10,"transmission":false,"snpDist":4,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":-42,"infectionDiff":1125,"infectionDiffY":3.08219,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"015_014","label":"SNPs","pAvg":0.01631,"pSD":0.00661,"pScaled":0.00896,"pRank":20,"nSamples":50,"individualID.1":15,"individualID.2":14,"transmission":false,"snpDist":4,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":538,"infectionDiff":1662,"infectionDiffY":4.55342,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"015_016","label":"SNPs","pAvg":0.02681,"pSD":0.00545,"pScaled":0.06682,"pRank":8,"nSamples":500,"individualID.1":15,"individualID.2":16,"transmission":false,"snpDist":6,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1989-04-18 04:17:39","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1995-12-16 04:24:53","sampleDiff":1218,"infectionDiff":241,"infectionDiffY":0.66027,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"015_017","label":"SNPs","pAvg":0.03773,"pSD":0.00953,"pScaled":0.0526,"pRank":9,"nSamples":500,"individualID.1":15,"individualID.2":17,"transmission":false,"snpDist":7,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":1676,"infectionDiff":1434,"infectionDiffY":3.92877,"timeCat":"4","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"015_018","label":"SNPs","pAvg":0.00769,"pSD":0.00215,"pScaled":0.00872,"pRank":30,"nSamples":500,"individualID.1":15,"individualID.2":18,"transmission":false,"snpDist":6,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":431,"infectionDiff":1858,"infectionDiffY":5.09041,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"015_021","label":"SNPs","pAvg":0.01699,"pSD":0.004,"pScaled":0.01621,"pRank":22,"nSamples":500,"individualID.1":15,"individualID.2":21,"transmission":false,"snpDist":5,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":1876,"infectionDiff":1856,"infectionDiffY":5.08493,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"015_022","label":"SNPs","pAvg":0.08824,"pSD":0.0183,"pScaled":0.17213,"pRank":1,"nSamples":500,"individualID.1":15,"individualID.2":22,"transmission":true,"snpDist":3,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1989-06-06 04:07:23","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1991-10-22 14:29:51","sampleDiff":-298,"infectionDiff":290,"infectionDiffY":0.79452,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"015_023","label":"SNPs","pAvg":0.01546,"pSD":0.00395,"pScaled":0.00688,"pRank":24,"nSamples":50,"individualID.1":15,"individualID.2":23,"transmission":false,"snpDist":7,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":2664,"infectionDiff":3623,"infectionDiffY":9.92603,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"015_024","label":"SNPs","pAvg":0.02999,"pSD":0.00902,"pScaled":0.02318,"pRank":7,"nSamples":50,"individualID.1":15,"individualID.2":24,"transmission":false,"snpDist":6,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1991-02-07 21:59:42","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1992-10-05 23:05:30","sampleDiff":52,"infectionDiff":902,"infectionDiffY":2.47123,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"015_025","label":"SNPs","pAvg":0.04693,"pSD":0.01125,"pScaled":0.01065,"pRank":11,"nSamples":50,"individualID.1":15,"individualID.2":25,"transmission":false,"snpDist":3,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1989-07-09 14:49:21","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1990-01-24 23:05:50","sampleDiff":-933,"infectionDiff":323,"infectionDiffY":0.88493,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"015_026","label":"SNPs","pAvg":0.00974,"pSD":0.00204,"pScaled":0.00342,"pRank":22,"nSamples":50,"individualID.1":15,"individualID.2":26,"transmission":false,"snpDist":6,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":2268,"infectionDiff":2920,"infectionDiffY":8,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"015_027","label":"SNPs","pAvg":0.01764,"pSD":0.00446,"pScaled":0.0063,"pRank":19,"nSamples":50,"individualID.1":15,"individualID.2":27,"transmission":false,"snpDist":5,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":2441,"infectionDiff":3510,"infectionDiffY":9.61644,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"015_028","label":"SNPs","pAvg":0.01545,"pSD":0.00405,"pScaled":0.00432,"pRank":31,"nSamples":50,"individualID.1":15,"individualID.2":28,"transmission":false,"snpDist":5,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":1658,"infectionDiff":2334,"infectionDiffY":6.39452,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"015_029","label":"SNPs","pAvg":0.04857,"pSD":0.01426,"pScaled":0.11988,"pRank":3,"nSamples":500,"individualID.1":15,"individualID.2":29,"transmission":false,"snpDist":3,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1990-12-27 23:28:20","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1992-03-01 23:20:54","sampleDiff":-166,"infectionDiff":860,"infectionDiffY":2.35616,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"015_030","label":"SNPs","pAvg":0.02045,"pSD":0.00581,"pScaled":0.0143,"pRank":10,"nSamples":50,"individualID.1":15,"individualID.2":30,"transmission":false,"snpDist":4,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":-91,"infectionDiff":1341,"infectionDiffY":3.67397,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"015_031","label":"SNPs","pAvg":0.05146,"pSD":0.01429,"pScaled":0.0849,"pRank":5,"nSamples":500,"individualID.1":15,"individualID.2":31,"transmission":false,"snpDist":3,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1991-01-03 16:49:07","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1991-07-17 03:37:35","sampleDiff":-395,"infectionDiff":866,"infectionDiffY":2.3726,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"015_032","label":"SNPs","pAvg":0.01975,"pSD":0.00509,"pScaled":0.01346,"pRank":12,"nSamples":50,"individualID.1":15,"individualID.2":32,"transmission":false,"snpDist":8,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":1339,"infectionDiff":1287,"infectionDiffY":3.52603,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"015_033","label":"SNPs","pAvg":0.0044,"pSD":0.0009,"pScaled":0.00201,"pRank":41,"nSamples":50,"individualID.1":15,"individualID.2":33,"transmission":false,"snpDist":8,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":1885,"infectionDiff":3191,"infectionDiffY":8.74247,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"015_034","label":"SNPs","pAvg":0.02929,"pSD":0.00841,"pScaled":0.09844,"pRank":5,"nSamples":500,"individualID.1":15,"individualID.2":34,"transmission":false,"snpDist":7,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":908,"infectionDiff":906,"infectionDiffY":2.48219,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"015_035","label":"SNPs","pAvg":0.00778,"pSD":0.00226,"pScaled":0.00202,"pRank":38,"nSamples":50,"individualID.1":15,"individualID.2":35,"transmission":false,"snpDist":3,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":1848,"infectionDiff":1989,"infectionDiffY":5.44932,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"015_036","label":"SNPs","pAvg":0.01733,"pSD":0.00387,"pScaled":0.00469,"pRank":34,"nSamples":50,"individualID.1":15,"individualID.2":36,"transmission":false,"snpDist":3,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":1647,"infectionDiff":2799,"infectionDiffY":7.66849,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"015_037","label":"SNPs","pAvg":0.00935,"pSD":0.0022,"pScaled":0.00943,"pRank":28,"nSamples":500,"individualID.1":15,"individualID.2":37,"transmission":false,"snpDist":7,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":2034,"infectionDiff":2321,"infectionDiffY":6.3589,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"015_038","label":"SNPs","pAvg":0.01012,"pSD":0.00244,"pScaled":0.01201,"pRank":20,"nSamples":500,"individualID.1":15,"individualID.2":38,"transmission":false,"snpDist":7,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":1096,"infectionDiff":1966,"infectionDiffY":5.3863,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"015_039","label":"SNPs","pAvg":0.02137,"pSD":0.00592,"pScaled":0.04611,"pRank":6,"nSamples":500,"individualID.1":15,"individualID.2":39,"transmission":false,"snpDist":9,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":1261,"infectionDiff":1412,"infectionDiffY":3.86849,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"015_040","label":"SNPs","pAvg":0.01472,"pSD":0.00346,"pScaled":0.01317,"pRank":23,"nSamples":500,"individualID.1":15,"individualID.2":40,"transmission":false,"snpDist":6,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":1669,"infectionDiff":3055,"infectionDiffY":8.36986,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"015_041","label":"SNPs","pAvg":0.0186,"pSD":0.0053,"pScaled":0.04827,"pRank":8,"nSamples":500,"individualID.1":15,"individualID.2":41,"transmission":false,"snpDist":7,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":2519,"infectionDiff":1256,"infectionDiffY":3.4411,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"015_042","label":"SNPs","pAvg":0.04872,"pSD":0.01475,"pScaled":0.01798,"pRank":7,"nSamples":50,"individualID.1":15,"individualID.2":42,"transmission":false,"snpDist":3,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":-78,"infectionDiff":908,"infectionDiffY":2.48767,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"015_043","label":"SNPs","pAvg":0.00791,"pSD":0.00369,"pScaled":0.01068,"pRank":23,"nSamples":500,"individualID.1":15,"individualID.2":43,"transmission":false,"snpDist":9,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":2644,"infectionDiff":1674,"infectionDiffY":4.5863,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"015_044","label":"SNPs","pAvg":0.0077,"pSD":0.00349,"pScaled":0.00207,"pRank":21,"nSamples":50,"individualID.1":15,"individualID.2":44,"transmission":false,"snpDist":6,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":265,"infectionDiff":1576,"infectionDiffY":4.31781,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"015_045","label":"SNPs","pAvg":0.00494,"pSD":0.00106,"pScaled":0.00299,"pRank":40,"nSamples":50,"individualID.1":15,"individualID.2":45,"transmission":false,"snpDist":9,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":2043,"infectionDiff":2566,"infectionDiffY":7.03014,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"015_046","label":"SNPs","pAvg":0.00917,"pSD":0.00396,"pScaled":0.0053,"pRank":22,"nSamples":50,"individualID.1":15,"individualID.2":46,"transmission":false,"snpDist":7,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":948,"infectionDiff":1521,"infectionDiffY":4.16712,"timeCat":"5","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"015_047","label":"SNPs","pAvg":0.00983,"pSD":0.00224,"pScaled":0.00212,"pRank":34,"nSamples":50,"individualID.1":15,"individualID.2":47,"transmission":false,"snpDist":7,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":894,"infectionDiff":2252,"infectionDiffY":6.16986,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"015_048","label":"SNPs","pAvg":0.00553,"pSD":0.00259,"pScaled":0.00244,"pRank":29,"nSamples":50,"individualID.1":15,"individualID.2":48,"transmission":false,"snpDist":8,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":1177,"infectionDiff":1786,"infectionDiffY":4.89315,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"015_049","label":"SNPs","pAvg":0.03113,"pSD":0.00729,"pScaled":0.02039,"pRank":9,"nSamples":50,"individualID.1":15,"individualID.2":49,"transmission":false,"snpDist":8,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":912,"infectionDiff":1404,"infectionDiffY":3.84658,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"015_050","label":"SNPs","pAvg":0.0177,"pSD":0.00575,"pScaled":0.07728,"pRank":5,"nSamples":500,"individualID.1":15,"individualID.2":50,"transmission":false,"snpDist":4,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":766,"infectionDiff":1076,"infectionDiffY":2.94795,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"015_051","label":"SNPs","pAvg":0.00827,"pSD":0.0019,"pScaled":0.00392,"pRank":39,"nSamples":50,"individualID.1":15,"individualID.2":51,"transmission":false,"snpDist":4,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":681,"infectionDiff":2044,"infectionDiffY":5.6,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"015_052","label":"SNPs","pAvg":0.01022,"pSD":0.00241,"pScaled":0.00383,"pRank":30,"nSamples":50,"individualID.1":15,"individualID.2":52,"transmission":false,"snpDist":5,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":2513,"infectionDiff":3071,"infectionDiffY":8.4137,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"015_053","label":"SNPs","pAvg":0.00927,"pSD":0.00173,"pScaled":0.00619,"pRank":21,"nSamples":50,"individualID.1":15,"individualID.2":53,"transmission":false,"snpDist":7,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":1201,"infectionDiff":2536,"infectionDiffY":6.94795,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"015_054","label":"SNPs","pAvg":0.00467,"pSD":0.00105,"pScaled":0.00122,"pRank":44,"nSamples":50,"individualID.1":15,"individualID.2":54,"transmission":false,"snpDist":7,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":2372,"infectionDiff":3460,"infectionDiffY":9.47945,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"015_055","label":"SNPs","pAvg":0.00812,"pSD":0.00235,"pScaled":0.00249,"pRank":25,"nSamples":50,"individualID.1":15,"individualID.2":55,"transmission":false,"snpDist":7,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":1355,"infectionDiff":2728,"infectionDiffY":7.47397,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"015_056","label":"SNPs","pAvg":0.01039,"pSD":0.00243,"pScaled":0.00248,"pRank":22,"nSamples":50,"individualID.1":15,"individualID.2":56,"transmission":false,"snpDist":7,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":1779,"infectionDiff":2812,"infectionDiffY":7.70411,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"015_057","label":"SNPs","pAvg":0.0106,"pSD":0.00252,"pScaled":0.00212,"pRank":25,"nSamples":50,"individualID.1":15,"individualID.2":57,"transmission":false,"snpDist":8,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":2342,"infectionDiff":3462,"infectionDiffY":9.48493,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"015_058","label":"SNPs","pAvg":0.01012,"pSD":0.00244,"pScaled":0.00999,"pRank":27,"nSamples":500,"individualID.1":15,"individualID.2":58,"transmission":false,"snpDist":8,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":2627,"infectionDiff":3151,"infectionDiffY":8.63288,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"015_059","label":"SNPs","pAvg":0.00909,"pSD":0.00409,"pScaled":0.01306,"pRank":20,"nSamples":500,"individualID.1":15,"individualID.2":59,"transmission":false,"snpDist":9,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":2007,"infectionDiff":1615,"infectionDiffY":4.42466,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"015_060","label":"SNPs","pAvg":0.01495,"pSD":0.00342,"pScaled":0.00724,"pRank":23,"nSamples":50,"individualID.1":15,"individualID.2":60,"transmission":false,"snpDist":7,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":2668,"infectionDiff":3793,"infectionDiffY":10.39178,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"015_061","label":"SNPs","pAvg":0.00187,"pSD":0.00052,"pScaled":0.00355,"pRank":37,"nSamples":500,"individualID.1":15,"individualID.2":61,"transmission":false,"snpDist":6,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":2461,"infectionDiff":3011,"infectionDiffY":8.24932,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"015_062","label":"SNPs","pAvg":0.00962,"pSD":0.00252,"pScaled":0.00255,"pRank":29,"nSamples":50,"individualID.1":15,"individualID.2":62,"transmission":false,"snpDist":7,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":1196,"infectionDiff":1915,"infectionDiffY":5.24658,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"015_063","label":"SNPs","pAvg":0.00995,"pSD":0.00406,"pScaled":0.00479,"pRank":16,"nSamples":50,"individualID.1":15,"individualID.2":63,"transmission":false,"snpDist":8,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":628,"infectionDiff":1710,"infectionDiffY":4.68493,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"015_064","label":"SNPs","pAvg":0.00505,"pSD":0.00113,"pScaled":0.00192,"pRank":27,"nSamples":50,"individualID.1":15,"individualID.2":64,"transmission":false,"snpDist":8,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":1411,"infectionDiff":2692,"infectionDiffY":7.37534,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"015_065","label":"SNPs","pAvg":0.00381,"pSD":0.00096,"pScaled":0.00294,"pRank":25,"nSamples":50,"individualID.1":15,"individualID.2":65,"transmission":false,"snpDist":7,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":1419,"infectionDiff":2625,"infectionDiffY":7.19178,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"015_066","label":"SNPs","pAvg":0.0162,"pSD":0.00421,"pScaled":0.00428,"pRank":18,"nSamples":50,"individualID.1":15,"individualID.2":66,"transmission":false,"snpDist":8,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":1566,"infectionDiff":2771,"infectionDiffY":7.59178,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"015_067","label":"SNPs","pAvg":0.01022,"pSD":0.00222,"pScaled":0.00258,"pRank":40,"nSamples":50,"individualID.1":15,"individualID.2":67,"transmission":false,"snpDist":9,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":2688,"infectionDiff":3857,"infectionDiffY":10.56712,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"015_068","label":"SNPs","pAvg":0.00913,"pSD":0.00239,"pScaled":0.002,"pRank":42,"nSamples":50,"individualID.1":15,"individualID.2":68,"transmission":false,"snpDist":4,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":2294,"infectionDiff":3508,"infectionDiffY":9.61096,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"015_069","label":"SNPs","pAvg":0.00148,"pSD":0.00045,"pScaled":0.00047,"pRank":68,"nSamples":50,"individualID.1":15,"individualID.2":69,"transmission":false,"snpDist":5,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":2339,"infectionDiff":3535,"infectionDiffY":9.68493,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"015_070","label":"SNPs","pAvg":0.01712,"pSD":0.00344,"pScaled":0.0053,"pRank":22,"nSamples":50,"individualID.1":15,"individualID.2":70,"transmission":false,"snpDist":8,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":875,"infectionDiff":1953,"infectionDiffY":5.35068,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"015_071","label":"SNPs","pAvg":0.00168,"pSD":0.00521,"pScaled":0.00171,"pRank":38,"nSamples":500,"individualID.1":15,"individualID.2":71,"transmission":false,"snpDist":12,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":2394,"infectionDiff":2211,"infectionDiffY":6.05753,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"015_072","label":"SNPs","pAvg":0.0045,"pSD":0.00095,"pScaled":0.00137,"pRank":29,"nSamples":50,"individualID.1":15,"individualID.2":72,"transmission":false,"snpDist":8,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":835,"infectionDiff":2130,"infectionDiffY":5.83562,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"015_073","label":"SNPs","pAvg":0.00345,"pSD":0.00107,"pScaled":0.00254,"pRank":31,"nSamples":50,"individualID.1":15,"individualID.2":73,"transmission":false,"snpDist":6,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":1916,"infectionDiff":2882,"infectionDiffY":7.89589,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"015_074","label":"SNPs","pAvg":0.00175,"pSD":0.00051,"pScaled":0.00096,"pRank":28,"nSamples":50,"individualID.1":15,"individualID.2":74,"transmission":false,"snpDist":5,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":1756,"infectionDiff":2262,"infectionDiffY":6.19726,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"015_075","label":"SNPs","pAvg":0.00032,"pSD":0.001,"pScaled":0.00139,"pRank":60,"nSamples":500,"individualID.1":15,"individualID.2":75,"transmission":false,"snpDist":11,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":2422,"infectionDiff":3835,"infectionDiffY":10.50685,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"015_076","label":"SNPs","pAvg":0.00418,"pSD":0.00087,"pScaled":0.00102,"pRank":65,"nSamples":50,"individualID.1":15,"individualID.2":76,"transmission":false,"snpDist":4,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":2657,"infectionDiff":3508,"infectionDiffY":9.61096,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"015_077","label":"SNPs","pAvg":0.00493,"pSD":0.00129,"pScaled":0.00109,"pRank":51,"nSamples":50,"individualID.1":15,"individualID.2":77,"transmission":false,"snpDist":3,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":1810,"infectionDiff":3224,"infectionDiffY":8.83288,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"015_078","label":"SNPs","pAvg":0.01475,"pSD":0.0034,"pScaled":0.00327,"pRank":33,"nSamples":50,"individualID.1":15,"individualID.2":78,"transmission":false,"snpDist":3,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":2500,"infectionDiff":3536,"infectionDiffY":9.68767,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"015_079","label":"SNPs","pAvg":0.00529,"pSD":0.00128,"pScaled":0.00266,"pRank":21,"nSamples":50,"individualID.1":15,"individualID.2":79,"transmission":false,"snpDist":10,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":1909,"infectionDiff":2820,"infectionDiffY":7.72603,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"015_080","label":"SNPs","pAvg":0.002,"pSD":0.00056,"pScaled":0.01458,"pRank":15,"nSamples":500,"individualID.1":15,"individualID.2":80,"transmission":false,"snpDist":8,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":1918,"infectionDiff":2752,"infectionDiffY":7.53973,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"015_081","label":"SNPs","pAvg":0.00329,"pSD":0.00116,"pScaled":0.00082,"pRank":58,"nSamples":50,"individualID.1":15,"individualID.2":81,"transmission":false,"snpDist":3,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":2634,"infectionDiff":3919,"infectionDiffY":10.73699,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"015_082","label":"SNPs","pAvg":0.00868,"pSD":0.00217,"pScaled":0.00189,"pRank":37,"nSamples":50,"individualID.1":15,"individualID.2":82,"transmission":false,"snpDist":5,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":2638,"infectionDiff":3996,"infectionDiffY":10.94795,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"015_083","label":"SNPs","pAvg":0.00924,"pSD":0.00239,"pScaled":0.0036,"pRank":39,"nSamples":50,"individualID.1":15,"individualID.2":83,"transmission":false,"snpDist":5,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":2414,"infectionDiff":3466,"infectionDiffY":9.49589,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"015_084","label":"SNPs","pAvg":0.00055,"pSD":0.00171,"pScaled":0.00028,"pRank":54,"nSamples":500,"individualID.1":15,"individualID.2":84,"transmission":false,"snpDist":12,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":2657,"infectionDiff":3514,"infectionDiffY":9.6274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"015_085","label":"SNPs","pAvg":0.00439,"pSD":0.00104,"pScaled":0.0015,"pRank":17,"nSamples":50,"individualID.1":15,"individualID.2":85,"transmission":false,"snpDist":10,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":1769,"infectionDiff":3179,"infectionDiffY":8.70959,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"015_086","label":"SNPs","pAvg":0.0015,"pSD":0.00046,"pScaled":0.00048,"pRank":45,"nSamples":50,"individualID.1":15,"individualID.2":86,"transmission":false,"snpDist":5,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":1607,"infectionDiff":2807,"infectionDiffY":7.69041,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"015_087","label":"SNPs","pAvg":0.00222,"pSD":0.00065,"pScaled":0.00181,"pRank":24,"nSamples":50,"individualID.1":15,"individualID.2":87,"transmission":false,"snpDist":9,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":2141,"infectionDiff":3347,"infectionDiffY":9.16986,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"015_088","label":"SNPs","pAvg":0.00766,"pSD":0.00224,"pScaled":0.00148,"pRank":43,"nSamples":50,"individualID.1":15,"individualID.2":88,"transmission":false,"snpDist":4,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":2251,"infectionDiff":3681,"infectionDiffY":10.08493,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"015_089","label":"SNPs","pAvg":0.00047,"pSD":0.00145,"pScaled":0.00015,"pRank":67,"nSamples":500,"individualID.1":15,"individualID.2":89,"transmission":false,"snpDist":11,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":2543,"infectionDiff":3518,"infectionDiffY":9.63836,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"015_090","label":"SNPs","pAvg":0.00047,"pSD":0.00144,"pScaled":0.00012,"pRank":80,"nSamples":500,"individualID.1":15,"individualID.2":90,"transmission":false,"snpDist":12,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":2613,"infectionDiff":3744,"infectionDiffY":10.25753,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"015_091","label":"SNPs","pAvg":0.00079,"pSD":0.00246,"pScaled":0.0004,"pRank":56,"nSamples":500,"individualID.1":15,"individualID.2":91,"transmission":false,"snpDist":11,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":2634,"infectionDiff":3335,"infectionDiffY":9.13699,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"015_092","label":"SNPs","pAvg":0.00054,"pSD":0.00167,"pScaled":0.00022,"pRank":56,"nSamples":500,"individualID.1":15,"individualID.2":92,"transmission":false,"snpDist":11,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":2681,"infectionDiff":3486,"infectionDiffY":9.55068,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"015_093","label":"SNPs","pAvg":0.00051,"pSD":0.00158,"pScaled":0.00014,"pRank":74,"nSamples":500,"individualID.1":15,"individualID.2":93,"transmission":false,"snpDist":12,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":2519,"infectionDiff":3712,"infectionDiffY":10.16986,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"015_094","label":"SNPs","pAvg":0.00409,"pSD":0.00099,"pScaled":0.00135,"pRank":40,"nSamples":50,"individualID.1":15,"individualID.2":94,"transmission":false,"snpDist":9,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":2564,"infectionDiff":3984,"infectionDiffY":10.91507,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"015_095","label":"SNPs","pAvg":0.00223,"pSD":0.00062,"pScaled":0.00113,"pRank":25,"nSamples":50,"individualID.1":15,"individualID.2":95,"transmission":false,"snpDist":9,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":2147,"infectionDiff":3416,"infectionDiffY":9.3589,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"015_096","label":"SNPs","pAvg":0.00198,"pSD":0.00056,"pScaled":0.00069,"pRank":43,"nSamples":50,"individualID.1":15,"individualID.2":96,"transmission":false,"snpDist":9,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":2242,"infectionDiff":3647,"infectionDiffY":9.99178,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"015_097","label":"SNPs","pAvg":0.00084,"pSD":0.0026,"pScaled":0.00019,"pRank":83,"nSamples":500,"individualID.1":15,"individualID.2":97,"transmission":false,"snpDist":11,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":2485,"infectionDiff":3804,"infectionDiffY":10.42192,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"015_098","label":"SNPs","pAvg":0.00091,"pSD":0.00277,"pScaled":0.00026,"pRank":60,"nSamples":500,"individualID.1":15,"individualID.2":98,"transmission":false,"snpDist":11,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":2303,"infectionDiff":3577,"infectionDiffY":9.8,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"015_099","label":"SNPs","pAvg":0.00351,"pSD":0.00095,"pScaled":0.0012,"pRank":37,"nSamples":50,"individualID.1":15,"individualID.2":99,"transmission":false,"snpDist":6,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":2286,"infectionDiff":3441,"infectionDiffY":9.4274,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"015_100","label":"SNPs","pAvg":0.00547,"pSD":0.00121,"pScaled":0.00161,"pRank":58,"nSamples":50,"individualID.1":15,"individualID.2":100,"transmission":false,"snpDist":6,"infectionDate.1":"1988-08-20 08:24:18","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1992-08-15 08:05:31","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":2485,"infectionDiff":3819,"infectionDiffY":10.46301,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"016_003","label":"SNPs","pAvg":0.00366,"pSD":0.01124,"pScaled":0.01156,"pRank":14,"nSamples":500,"individualID.1":16,"individualID.2":3,"transmission":false,"snpDist":11,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1990-12-11 19:24:08","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1998-10-30 22:42:57","sampleDiff":1050,"infectionDiff":603,"infectionDiffY":1.65205,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"016_006","label":"SNPs","pAvg":0.01917,"pSD":0.00556,"pScaled":0.01224,"pRank":11,"nSamples":50,"individualID.1":16,"individualID.2":6,"transmission":false,"snpDist":7,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":-1234,"infectionDiff":1161,"infectionDiffY":3.18082,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"016_009","label":"SNPs","pAvg":0.00173,"pSD":0.0053,"pScaled":0.00771,"pRank":33,"nSamples":500,"individualID.1":16,"individualID.2":9,"transmission":false,"snpDist":13,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":1289,"infectionDiff":1843,"infectionDiffY":5.04932,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"016_010","label":"SNPs","pAvg":0.02996,"pSD":0.00886,"pScaled":0.02171,"pRank":7,"nSamples":50,"individualID.1":16,"individualID.2":10,"transmission":false,"snpDist":6,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":-1259,"infectionDiff":884,"infectionDiffY":2.42192,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"016_014","label":"SNPs","pAvg":0.00965,"pSD":0.00303,"pScaled":0.0053,"pRank":23,"nSamples":50,"individualID.1":16,"individualID.2":14,"transmission":false,"snpDist":6,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":-680,"infectionDiff":1421,"infectionDiffY":3.89315,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"016_017","label":"SNPs","pAvg":0.01044,"pSD":0.00358,"pScaled":0.01455,"pRank":16,"nSamples":500,"individualID.1":16,"individualID.2":17,"transmission":false,"snpDist":9,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":458,"infectionDiff":1193,"infectionDiffY":3.26849,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"016_018","label":"SNPs","pAvg":0.00974,"pSD":0.00398,"pScaled":0.01104,"pRank":25,"nSamples":500,"individualID.1":16,"individualID.2":18,"transmission":false,"snpDist":8,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":-787,"infectionDiff":1618,"infectionDiffY":4.43288,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"016_021","label":"SNPs","pAvg":0.00434,"pSD":0.00185,"pScaled":0.00414,"pRank":36,"nSamples":500,"individualID.1":16,"individualID.2":21,"transmission":false,"snpDist":7,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":658,"infectionDiff":1615,"infectionDiffY":4.42466,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"016_022","label":"SNPs","pAvg":0.03308,"pSD":0.00772,"pScaled":0.06453,"pRank":8,"nSamples":500,"individualID.1":16,"individualID.2":22,"transmission":false,"snpDist":7,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1989-06-06 04:07:23","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1991-10-22 14:29:51","sampleDiff":-1516,"infectionDiff":49,"infectionDiffY":0.13425,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"016_023","label":"SNPs","pAvg":0.0057,"pSD":0.00141,"pScaled":0.00254,"pRank":58,"nSamples":50,"individualID.1":16,"individualID.2":23,"transmission":false,"snpDist":9,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1447,"infectionDiff":3383,"infectionDiffY":9.26849,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"016_024","label":"SNPs","pAvg":0.039,"pSD":0.00975,"pScaled":0.03014,"pRank":5,"nSamples":50,"individualID.1":16,"individualID.2":24,"transmission":false,"snpDist":8,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1991-02-07 21:59:42","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1992-10-05 23:05:30","sampleDiff":-1166,"infectionDiff":661,"infectionDiffY":1.81096,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"016_025","label":"SNPs","pAvg":0.06075,"pSD":0.01451,"pScaled":0.01379,"pRank":10,"nSamples":50,"individualID.1":16,"individualID.2":25,"transmission":false,"snpDist":5,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1989-07-09 14:49:21","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1990-01-24 23:05:50","sampleDiff":-2151,"infectionDiff":82,"infectionDiffY":0.22466,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"016_026","label":"SNPs","pAvg":0.00781,"pSD":0.00219,"pScaled":0.00274,"pRank":30,"nSamples":50,"individualID.1":16,"individualID.2":26,"transmission":false,"snpDist":8,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1051,"infectionDiff":2679,"infectionDiffY":7.33973,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"016_027","label":"SNPs","pAvg":0.0047,"pSD":0.00108,"pScaled":0.00168,"pRank":67,"nSamples":50,"individualID.1":16,"individualID.2":27,"transmission":false,"snpDist":7,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1223,"infectionDiff":3269,"infectionDiffY":8.95616,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"016_028","label":"SNPs","pAvg":0.00572,"pSD":0.00147,"pScaled":0.0016,"pRank":46,"nSamples":50,"individualID.1":16,"individualID.2":28,"transmission":false,"snpDist":7,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":440,"infectionDiff":2093,"infectionDiffY":5.73425,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"016_029","label":"SNPs","pAvg":0.02416,"pSD":0.00647,"pScaled":0.05963,"pRank":7,"nSamples":500,"individualID.1":16,"individualID.2":29,"transmission":false,"snpDist":7,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1990-12-27 23:28:20","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1992-03-01 23:20:54","sampleDiff":-1384,"infectionDiff":619,"infectionDiffY":1.69589,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"016_030","label":"SNPs","pAvg":0.01593,"pSD":0.00514,"pScaled":0.01114,"pRank":12,"nSamples":50,"individualID.1":16,"individualID.2":30,"transmission":false,"snpDist":8,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":-1309,"infectionDiff":1100,"infectionDiffY":3.0137,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"016_031","label":"SNPs","pAvg":0.02565,"pSD":0.00637,"pScaled":0.04232,"pRank":9,"nSamples":500,"individualID.1":16,"individualID.2":31,"transmission":false,"snpDist":7,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1991-01-03 16:49:07","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1991-07-17 03:37:35","sampleDiff":-1613,"infectionDiff":626,"infectionDiffY":1.71507,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"016_032","label":"SNPs","pAvg":0.02952,"pSD":0.0079,"pScaled":0.02012,"pRank":11,"nSamples":50,"individualID.1":16,"individualID.2":32,"transmission":false,"snpDist":10,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":121,"infectionDiff":1046,"infectionDiffY":2.86575,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"016_033","label":"SNPs","pAvg":0.00854,"pSD":0.00208,"pScaled":0.00389,"pRank":21,"nSamples":50,"individualID.1":16,"individualID.2":33,"transmission":false,"snpDist":10,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":668,"infectionDiff":2951,"infectionDiffY":8.08493,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"016_034","label":"SNPs","pAvg":0.00088,"pSD":0.00273,"pScaled":0.00296,"pRank":18,"nSamples":500,"individualID.1":16,"individualID.2":34,"transmission":false,"snpDist":11,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":-310,"infectionDiff":665,"infectionDiffY":1.82192,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"016_035","label":"SNPs","pAvg":0.00904,"pSD":0.00402,"pScaled":0.00235,"pRank":33,"nSamples":50,"individualID.1":16,"individualID.2":35,"transmission":false,"snpDist":7,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":630,"infectionDiff":1748,"infectionDiffY":4.78904,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"016_036","label":"SNPs","pAvg":0.0046,"pSD":0.00109,"pScaled":0.00124,"pRank":57,"nSamples":50,"individualID.1":16,"individualID.2":36,"transmission":false,"snpDist":7,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":429,"infectionDiff":2558,"infectionDiffY":7.00822,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"016_037","label":"SNPs","pAvg":0.00096,"pSD":0.00295,"pScaled":0.00096,"pRank":49,"nSamples":500,"individualID.1":16,"individualID.2":37,"transmission":false,"snpDist":11,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":816,"infectionDiff":2081,"infectionDiffY":5.70137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"016_038","label":"SNPs","pAvg":0.00074,"pSD":0.00247,"pScaled":0.00088,"pRank":40,"nSamples":500,"individualID.1":16,"individualID.2":38,"transmission":false,"snpDist":12,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":-122,"infectionDiff":1725,"infectionDiffY":4.72603,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"016_039","label":"SNPs","pAvg":0.00166,"pSD":0.00527,"pScaled":0.00359,"pRank":24,"nSamples":500,"individualID.1":16,"individualID.2":39,"transmission":false,"snpDist":13,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":43,"infectionDiff":1171,"infectionDiffY":3.20822,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"016_040","label":"SNPs","pAvg":0.00524,"pSD":0.00131,"pScaled":0.00468,"pRank":51,"nSamples":500,"individualID.1":16,"individualID.2":40,"transmission":false,"snpDist":10,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":451,"infectionDiff":2814,"infectionDiffY":7.70959,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"016_041","label":"SNPs","pAvg":0.0029,"pSD":0.00914,"pScaled":0.00752,"pRank":22,"nSamples":500,"individualID.1":16,"individualID.2":41,"transmission":false,"snpDist":11,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":1301,"infectionDiff":1015,"infectionDiffY":2.78082,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"016_042","label":"SNPs","pAvg":0.02411,"pSD":0.00681,"pScaled":0.0089,"pRank":11,"nSamples":50,"individualID.1":16,"individualID.2":42,"transmission":false,"snpDist":7,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":-1295,"infectionDiff":667,"infectionDiffY":1.8274,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"016_043","label":"SNPs","pAvg":0.00231,"pSD":0.00729,"pScaled":0.00312,"pRank":31,"nSamples":500,"individualID.1":16,"individualID.2":43,"transmission":false,"snpDist":11,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":1426,"infectionDiff":1434,"infectionDiffY":3.92877,"timeCat":"4","Z1":"1","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"016_044","label":"SNPs","pAvg":0.01168,"pSD":0.00416,"pScaled":0.00314,"pRank":16,"nSamples":50,"individualID.1":16,"individualID.2":44,"transmission":false,"snpDist":8,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":-953,"infectionDiff":1335,"infectionDiffY":3.65753,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"016_045","label":"SNPs","pAvg":0.00194,"pSD":0.00599,"pScaled":0.00118,"pRank":45,"nSamples":500,"individualID.1":16,"individualID.2":45,"transmission":false,"snpDist":11,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":825,"infectionDiff":2325,"infectionDiffY":6.36986,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"1","snpClose":false} {"pairID":"016_046","label":"SNPs","pAvg":0.01979,"pSD":0.00514,"pScaled":0.01145,"pRank":14,"nSamples":50,"individualID.1":16,"individualID.2":46,"transmission":false,"snpDist":9,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":-270,"infectionDiff":1280,"infectionDiffY":3.50685,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"016_047","label":"SNPs","pAvg":0.00959,"pSD":0.00202,"pScaled":0.00207,"pRank":36,"nSamples":50,"individualID.1":16,"individualID.2":47,"transmission":false,"snpDist":9,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":-324,"infectionDiff":2011,"infectionDiffY":5.50959,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"016_048","label":"SNPs","pAvg":0.01564,"pSD":0.00745,"pScaled":0.00689,"pRank":15,"nSamples":50,"individualID.1":16,"individualID.2":48,"transmission":false,"snpDist":10,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":-41,"infectionDiff":1545,"infectionDiffY":4.23288,"timeCat":"5","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"016_049","label":"SNPs","pAvg":0.01075,"pSD":0.00306,"pScaled":0.00704,"pRank":14,"nSamples":50,"individualID.1":16,"individualID.2":49,"transmission":false,"snpDist":10,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":-306,"infectionDiff":1163,"infectionDiffY":3.1863,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"016_050","label":"SNPs","pAvg":0.00554,"pSD":0.00192,"pScaled":0.02419,"pRank":12,"nSamples":500,"individualID.1":16,"individualID.2":50,"transmission":false,"snpDist":8,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":-451,"infectionDiff":836,"infectionDiffY":2.29041,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"016_051","label":"SNPs","pAvg":0.0104,"pSD":0.00527,"pScaled":0.00492,"pRank":34,"nSamples":50,"individualID.1":16,"individualID.2":51,"transmission":false,"snpDist":8,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-537,"infectionDiff":1803,"infectionDiffY":4.93973,"timeCat":"5","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"016_052","label":"SNPs","pAvg":0.00797,"pSD":0.00247,"pScaled":0.00299,"pRank":40,"nSamples":50,"individualID.1":16,"individualID.2":52,"transmission":false,"snpDist":9,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1295,"infectionDiff":2830,"infectionDiffY":7.75342,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"016_053","label":"SNPs","pAvg":0.0009,"pSD":0.00282,"pScaled":0.0006,"pRank":49,"nSamples":500,"individualID.1":16,"individualID.2":53,"transmission":false,"snpDist":11,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":-17,"infectionDiff":2295,"infectionDiffY":6.28767,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"016_054","label":"SNPs","pAvg":0.00091,"pSD":0.00282,"pScaled":0.00024,"pRank":64,"nSamples":500,"individualID.1":16,"individualID.2":54,"transmission":false,"snpDist":11,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1154,"infectionDiff":3219,"infectionDiffY":8.81918,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"016_055","label":"SNPs","pAvg":0.00102,"pSD":0.00317,"pScaled":0.00031,"pRank":51,"nSamples":500,"individualID.1":16,"individualID.2":55,"transmission":false,"snpDist":11,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":137,"infectionDiff":2487,"infectionDiffY":6.8137,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"016_056","label":"SNPs","pAvg":0.00078,"pSD":0.00246,"pScaled":0.00019,"pRank":57,"nSamples":500,"individualID.1":16,"individualID.2":56,"transmission":false,"snpDist":11,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":561,"infectionDiff":2571,"infectionDiffY":7.04384,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"016_057","label":"SNPs","pAvg":0.00793,"pSD":0.0022,"pScaled":0.00159,"pRank":32,"nSamples":50,"individualID.1":16,"individualID.2":57,"transmission":false,"snpDist":10,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1124,"infectionDiff":3221,"infectionDiffY":8.82466,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"016_058","label":"SNPs","pAvg":0.00077,"pSD":0.0024,"pScaled":0.00076,"pRank":61,"nSamples":500,"individualID.1":16,"individualID.2":58,"transmission":false,"snpDist":13,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1409,"infectionDiff":2910,"infectionDiffY":7.9726,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"016_059","label":"SNPs","pAvg":0.00205,"pSD":0.00658,"pScaled":0.00295,"pRank":30,"nSamples":500,"individualID.1":16,"individualID.2":59,"transmission":false,"snpDist":13,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":789,"infectionDiff":1374,"infectionDiffY":3.76438,"timeCat":"4","Z1":"0","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"016_060","label":"SNPs","pAvg":0.00053,"pSD":0.00165,"pScaled":0.00026,"pRank":87,"nSamples":500,"individualID.1":16,"individualID.2":60,"transmission":false,"snpDist":11,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1451,"infectionDiff":3552,"infectionDiffY":9.73151,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"016_061","label":"SNPs","pAvg":0.00451,"pSD":0.00102,"pScaled":0.00857,"pRank":23,"nSamples":500,"individualID.1":16,"individualID.2":61,"transmission":false,"snpDist":9,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1244,"infectionDiff":2770,"infectionDiffY":7.58904,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"016_062","label":"SNPs","pAvg":0.00903,"pSD":0.0042,"pScaled":0.00239,"pRank":31,"nSamples":50,"individualID.1":16,"individualID.2":62,"transmission":false,"snpDist":9,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":-22,"infectionDiff":1674,"infectionDiffY":4.5863,"timeCat":"5","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"016_063","label":"SNPs","pAvg":0.00152,"pSD":0.00068,"pScaled":0.00073,"pRank":32,"nSamples":50,"individualID.1":16,"individualID.2":63,"transmission":false,"snpDist":10,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":-590,"infectionDiff":1469,"infectionDiffY":4.02466,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"016_064","label":"SNPs","pAvg":0.00097,"pSD":0.00301,"pScaled":0.00037,"pRank":49,"nSamples":500,"individualID.1":16,"individualID.2":64,"transmission":false,"snpDist":12,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":193,"infectionDiff":2451,"infectionDiffY":6.71507,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"016_065","label":"SNPs","pAvg":0.00044,"pSD":0.00136,"pScaled":0.00034,"pRank":52,"nSamples":500,"individualID.1":16,"individualID.2":65,"transmission":false,"snpDist":11,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":201,"infectionDiff":2384,"infectionDiffY":6.53151,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"016_066","label":"SNPs","pAvg":0.00055,"pSD":0.00172,"pScaled":0.00015,"pRank":57,"nSamples":500,"individualID.1":16,"individualID.2":66,"transmission":false,"snpDist":12,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":348,"infectionDiff":2530,"infectionDiffY":6.93151,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"016_067","label":"SNPs","pAvg":0.00077,"pSD":0.00242,"pScaled":0.0002,"pRank":85,"nSamples":500,"individualID.1":16,"individualID.2":67,"transmission":false,"snpDist":11,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1470,"infectionDiff":3616,"infectionDiffY":9.90685,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"016_068","label":"SNPs","pAvg":0.00453,"pSD":0.00108,"pScaled":0.00099,"pRank":70,"nSamples":50,"individualID.1":16,"individualID.2":68,"transmission":false,"snpDist":7,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":1076,"infectionDiff":3268,"infectionDiffY":8.95342,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"016_069","label":"SNPs","pAvg":0.00514,"pSD":0.0013,"pScaled":0.00165,"pRank":29,"nSamples":50,"individualID.1":16,"individualID.2":69,"transmission":false,"snpDist":8,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1121,"infectionDiff":3294,"infectionDiffY":9.02466,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"016_070","label":"SNPs","pAvg":0.00436,"pSD":0.002,"pScaled":0.00135,"pRank":37,"nSamples":50,"individualID.1":16,"individualID.2":70,"transmission":false,"snpDist":10,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":-343,"infectionDiff":1712,"infectionDiffY":4.69041,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"016_071","label":"SNPs","pAvg":0.00044,"pSD":0.00137,"pScaled":0.00045,"pRank":45,"nSamples":500,"individualID.1":16,"individualID.2":71,"transmission":false,"snpDist":14,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":1176,"infectionDiff":1971,"infectionDiffY":5.4,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"016_072","label":"SNPs","pAvg":0.00364,"pSD":0.00117,"pScaled":0.00111,"pRank":31,"nSamples":50,"individualID.1":16,"individualID.2":72,"transmission":false,"snpDist":10,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":-383,"infectionDiff":1890,"infectionDiffY":5.17808,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"016_073","label":"SNPs","pAvg":0.00194,"pSD":0.00057,"pScaled":0.00143,"pRank":36,"nSamples":50,"individualID.1":16,"individualID.2":73,"transmission":false,"snpDist":10,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":698,"infectionDiff":2641,"infectionDiffY":7.23562,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"016_074","label":"SNPs","pAvg":0.00149,"pSD":0.00046,"pScaled":0.00082,"pRank":34,"nSamples":50,"individualID.1":16,"individualID.2":74,"transmission":false,"snpDist":9,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":538,"infectionDiff":2021,"infectionDiffY":5.53699,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"016_075","label":"SNPs","pAvg":0.00019,"pSD":0.00058,"pScaled":0.00081,"pRank":75,"nSamples":500,"individualID.1":16,"individualID.2":75,"transmission":false,"snpDist":15,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1204,"infectionDiff":3594,"infectionDiffY":9.84658,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"016_076","label":"SNPs","pAvg":0.01692,"pSD":0.00412,"pScaled":0.00415,"pRank":24,"nSamples":50,"individualID.1":16,"individualID.2":76,"transmission":false,"snpDist":8,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1439,"infectionDiff":3268,"infectionDiffY":8.95342,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"016_077","label":"SNPs","pAvg":0.00702,"pSD":0.00202,"pScaled":0.00155,"pRank":42,"nSamples":50,"individualID.1":16,"individualID.2":77,"transmission":false,"snpDist":7,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":592,"infectionDiff":2983,"infectionDiffY":8.1726,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"016_078","label":"SNPs","pAvg":0.00502,"pSD":0.0012,"pScaled":0.00111,"pRank":73,"nSamples":50,"individualID.1":16,"individualID.2":78,"transmission":false,"snpDist":7,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1283,"infectionDiff":3296,"infectionDiffY":9.03014,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"016_079","label":"SNPs","pAvg":0.00016,"pSD":0.00051,"pScaled":0.00008,"pRank":59,"nSamples":500,"individualID.1":16,"individualID.2":79,"transmission":false,"snpDist":12,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":691,"infectionDiff":2579,"infectionDiffY":7.06575,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"016_080","label":"SNPs","pAvg":0.00017,"pSD":0.00053,"pScaled":0.00123,"pRank":55,"nSamples":500,"individualID.1":16,"individualID.2":80,"transmission":false,"snpDist":12,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":700,"infectionDiff":2511,"infectionDiffY":6.87945,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"016_081","label":"SNPs","pAvg":0.00188,"pSD":0.00059,"pScaled":0.00047,"pRank":80,"nSamples":50,"individualID.1":16,"individualID.2":81,"transmission":false,"snpDist":7,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1416,"infectionDiff":3678,"infectionDiffY":10.07671,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"016_082","label":"SNPs","pAvg":0.00448,"pSD":0.00115,"pScaled":0.00098,"pRank":69,"nSamples":50,"individualID.1":16,"individualID.2":82,"transmission":false,"snpDist":9,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1420,"infectionDiff":3756,"infectionDiffY":10.29041,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"016_083","label":"SNPs","pAvg":0.00468,"pSD":0.00103,"pScaled":0.00182,"pRank":63,"nSamples":50,"individualID.1":16,"individualID.2":83,"transmission":false,"snpDist":9,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1196,"infectionDiff":3225,"infectionDiffY":8.83562,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"016_084","label":"SNPs","pAvg":0.00017,"pSD":0.00053,"pScaled":0.00009,"pRank":76,"nSamples":500,"individualID.1":16,"individualID.2":84,"transmission":false,"snpDist":14,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1439,"infectionDiff":3273,"infectionDiffY":8.96712,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"016_085","label":"SNPs","pAvg":0.00019,"pSD":0.00059,"pScaled":0.00006,"pRank":62,"nSamples":500,"individualID.1":16,"individualID.2":85,"transmission":false,"snpDist":12,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":551,"infectionDiff":2938,"infectionDiffY":8.04932,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"016_086","label":"SNPs","pAvg":0.00527,"pSD":0.00124,"pScaled":0.00168,"pRank":20,"nSamples":50,"individualID.1":16,"individualID.2":86,"transmission":false,"snpDist":9,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":389,"infectionDiff":2566,"infectionDiffY":7.03014,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"016_087","label":"SNPs","pAvg":0.00054,"pSD":0.00166,"pScaled":0.00044,"pRank":51,"nSamples":500,"individualID.1":16,"individualID.2":87,"transmission":false,"snpDist":13,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":924,"infectionDiff":3106,"infectionDiffY":8.50959,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"016_088","label":"SNPs","pAvg":0.00516,"pSD":0.00127,"pScaled":0.001,"pRank":60,"nSamples":50,"individualID.1":16,"individualID.2":88,"transmission":false,"snpDist":8,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":1033,"infectionDiff":3441,"infectionDiffY":9.4274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"016_089","label":"SNPs","pAvg":0.0002,"pSD":0.00064,"pScaled":0.00007,"pRank":76,"nSamples":500,"individualID.1":16,"individualID.2":89,"transmission":false,"snpDist":13,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1325,"infectionDiff":3277,"infectionDiffY":8.97808,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"016_090","label":"SNPs","pAvg":0.00019,"pSD":0.0006,"pScaled":0.00005,"pRank":85,"nSamples":500,"individualID.1":16,"individualID.2":90,"transmission":false,"snpDist":14,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1395,"infectionDiff":3503,"infectionDiffY":9.59726,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"016_091","label":"SNPs","pAvg":0.00053,"pSD":0.00162,"pScaled":0.00026,"pRank":64,"nSamples":500,"individualID.1":16,"individualID.2":91,"transmission":false,"snpDist":13,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1417,"infectionDiff":3095,"infectionDiffY":8.47945,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"016_092","label":"SNPs","pAvg":0.00016,"pSD":0.00052,"pScaled":0.00007,"pRank":75,"nSamples":500,"individualID.1":16,"individualID.2":92,"transmission":false,"snpDist":13,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1464,"infectionDiff":3246,"infectionDiffY":8.89315,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"016_093","label":"SNPs","pAvg":0.00021,"pSD":0.00067,"pScaled":0.00006,"pRank":83,"nSamples":500,"individualID.1":16,"individualID.2":93,"transmission":false,"snpDist":14,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1301,"infectionDiff":3471,"infectionDiffY":9.50959,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"016_094","label":"SNPs","pAvg":0.00048,"pSD":0.00147,"pScaled":0.00016,"pRank":83,"nSamples":500,"individualID.1":16,"individualID.2":94,"transmission":false,"snpDist":12,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1347,"infectionDiff":3743,"infectionDiffY":10.25479,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"016_095","label":"SNPs","pAvg":0.00054,"pSD":0.00167,"pScaled":0.00027,"pRank":51,"nSamples":500,"individualID.1":16,"individualID.2":95,"transmission":false,"snpDist":13,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":929,"infectionDiff":3175,"infectionDiffY":8.69863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"016_096","label":"SNPs","pAvg":0.00048,"pSD":0.00147,"pScaled":0.00017,"pRank":72,"nSamples":500,"individualID.1":16,"individualID.2":96,"transmission":false,"snpDist":13,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":1024,"infectionDiff":3407,"infectionDiffY":9.33425,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"016_097","label":"SNPs","pAvg":0.00054,"pSD":0.00169,"pScaled":0.00012,"pRank":88,"nSamples":500,"individualID.1":16,"individualID.2":97,"transmission":false,"snpDist":13,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1267,"infectionDiff":3563,"infectionDiffY":9.76164,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"016_098","label":"SNPs","pAvg":0.00019,"pSD":0.0006,"pScaled":0.00005,"pRank":84,"nSamples":500,"individualID.1":16,"individualID.2":98,"transmission":false,"snpDist":13,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":1085,"infectionDiff":3336,"infectionDiffY":9.13973,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"016_099","label":"SNPs","pAvg":0.00453,"pSD":0.00105,"pScaled":0.00155,"pRank":32,"nSamples":50,"individualID.1":16,"individualID.2":99,"transmission":false,"snpDist":10,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":1068,"infectionDiff":3200,"infectionDiffY":8.76712,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"016_100","label":"SNPs","pAvg":0.0156,"pSD":0.00379,"pScaled":0.0046,"pRank":28,"nSamples":50,"individualID.1":16,"individualID.2":100,"transmission":false,"snpDist":10,"infectionDate.1":"1989-04-18 04:17:39","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1995-12-16 04:24:53","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1268,"infectionDiff":3578,"infectionDiffY":9.80274,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"017_009","label":"SNPs","pAvg":0.00178,"pSD":0.00553,"pScaled":0.00792,"pRank":32,"nSamples":500,"individualID.1":17,"individualID.2":9,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":831,"infectionDiff":650,"infectionDiffY":1.78082,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"017_014","label":"SNPs","pAvg":0.08559,"pSD":0.02128,"pScaled":0.04702,"pRank":2,"nSamples":50,"individualID.1":17,"individualID.2":14,"transmission":false,"snpDist":7,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":-1138,"infectionDiff":228,"infectionDiffY":0.62466,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"017_018","label":"SNPs","pAvg":0.02961,"pSD":0.00726,"pScaled":0.03356,"pRank":10,"nSamples":500,"individualID.1":17,"individualID.2":18,"transmission":false,"snpDist":9,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":-1245,"infectionDiff":425,"infectionDiffY":1.16438,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"017_021","label":"SNPs","pAvg":0.06455,"pSD":0.01768,"pScaled":0.06161,"pRank":3,"nSamples":500,"individualID.1":17,"individualID.2":21,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":200,"infectionDiff":422,"infectionDiffY":1.15616,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"017_023","label":"SNPs","pAvg":0.9017,"pSD":0.2952,"pScaled":0.40136,"pRank":1,"nSamples":500,"individualID.1":17,"individualID.2":23,"transmission":true,"snpDist":2,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":988,"infectionDiff":2190,"infectionDiffY":6,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"1","snpClose":true} {"pairID":"017_026","label":"SNPs","pAvg":0.00769,"pSD":0.00378,"pScaled":0.0027,"pRank":32,"nSamples":50,"individualID.1":17,"individualID.2":26,"transmission":false,"snpDist":9,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":592,"infectionDiff":1486,"infectionDiffY":4.07123,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"017_027","label":"SNPs","pAvg":0.01499,"pSD":0.00429,"pScaled":0.00535,"pRank":29,"nSamples":50,"individualID.1":17,"individualID.2":27,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":765,"infectionDiff":2076,"infectionDiffY":5.68767,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"017_028","label":"SNPs","pAvg":0.065,"pSD":0.0204,"pScaled":0.01816,"pRank":7,"nSamples":50,"individualID.1":17,"individualID.2":28,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":-18,"infectionDiff":900,"infectionDiffY":2.46575,"timeCat":"3","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"017_033","label":"SNPs","pAvg":0.00032,"pSD":0.00107,"pScaled":0.00014,"pRank":67,"nSamples":500,"individualID.1":17,"individualID.2":33,"transmission":false,"snpDist":11,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":209,"infectionDiff":1758,"infectionDiffY":4.81644,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"017_035","label":"SNPs","pAvg":0.02994,"pSD":0.00718,"pScaled":0.00778,"pRank":17,"nSamples":50,"individualID.1":17,"individualID.2":35,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":172,"infectionDiff":555,"infectionDiffY":1.52055,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"017_036","label":"SNPs","pAvg":0.04755,"pSD":0.01206,"pScaled":0.01286,"pRank":12,"nSamples":50,"individualID.1":17,"individualID.2":36,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":-29,"infectionDiff":1365,"infectionDiffY":3.73973,"timeCat":"4","Z1":"1","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"017_037","label":"SNPs","pAvg":0.00381,"pSD":0.01191,"pScaled":0.00384,"pRank":39,"nSamples":500,"individualID.1":17,"individualID.2":37,"transmission":false,"snpDist":12,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":358,"infectionDiff":888,"infectionDiffY":2.43288,"timeCat":"3","Z1":"0","Z2":"1","Z3":"2","Z4":"2","snpClose":false} {"pairID":"017_038","label":"SNPs","pAvg":0.00397,"pSD":0.01251,"pScaled":0.00471,"pRank":32,"nSamples":500,"individualID.1":17,"individualID.2":38,"transmission":false,"snpDist":13,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":-580,"infectionDiff":532,"infectionDiffY":1.45753,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"017_040","label":"SNPs","pAvg":0.00123,"pSD":0.00414,"pScaled":0.0011,"pRank":64,"nSamples":500,"individualID.1":17,"individualID.2":40,"transmission":false,"snpDist":11,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":-7,"infectionDiff":1621,"infectionDiffY":4.4411,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"017_043","label":"SNPs","pAvg":0.00564,"pSD":0.01756,"pScaled":0.00761,"pRank":26,"nSamples":500,"individualID.1":17,"individualID.2":43,"transmission":false,"snpDist":12,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":968,"infectionDiff":241,"infectionDiffY":0.66027,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"017_044","label":"SNPs","pAvg":0.0547,"pSD":0.0135,"pScaled":0.01472,"pRank":6,"nSamples":50,"individualID.1":17,"individualID.2":44,"transmission":false,"snpDist":9,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":-1412,"infectionDiff":142,"infectionDiffY":0.38904,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"017_045","label":"SNPs","pAvg":0.0012,"pSD":0.00386,"pScaled":0.00072,"pRank":48,"nSamples":500,"individualID.1":17,"individualID.2":45,"transmission":false,"snpDist":12,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":367,"infectionDiff":1132,"infectionDiffY":3.10137,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"017_046","label":"SNPs","pAvg":0.06732,"pSD":0.01229,"pScaled":0.03895,"pRank":5,"nSamples":50,"individualID.1":17,"individualID.2":46,"transmission":false,"snpDist":10,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":-728,"infectionDiff":87,"infectionDiffY":0.23836,"timeCat":"1","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"017_047","label":"SNPs","pAvg":0.03653,"pSD":0.01106,"pScaled":0.00788,"pRank":18,"nSamples":50,"individualID.1":17,"individualID.2":47,"transmission":false,"snpDist":10,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":-782,"infectionDiff":818,"infectionDiffY":2.2411,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"017_048","label":"SNPs","pAvg":0.00392,"pSD":0.01204,"pScaled":0.00173,"pRank":33,"nSamples":500,"individualID.1":17,"individualID.2":48,"transmission":false,"snpDist":11,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":-499,"infectionDiff":352,"infectionDiffY":0.96438,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"017_051","label":"SNPs","pAvg":0.04716,"pSD":0.01329,"pScaled":0.02234,"pRank":9,"nSamples":50,"individualID.1":17,"individualID.2":51,"transmission":false,"snpDist":9,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-995,"infectionDiff":610,"infectionDiffY":1.67123,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"017_052","label":"SNPs","pAvg":0.00834,"pSD":0.00397,"pScaled":0.00313,"pRank":39,"nSamples":50,"individualID.1":17,"individualID.2":52,"transmission":false,"snpDist":10,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":837,"infectionDiff":1637,"infectionDiffY":4.48493,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"017_053","label":"SNPs","pAvg":0.00159,"pSD":0.00508,"pScaled":0.00106,"pRank":43,"nSamples":500,"individualID.1":17,"individualID.2":53,"transmission":false,"snpDist":12,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":-475,"infectionDiff":1102,"infectionDiffY":3.01918,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"017_054","label":"SNPs","pAvg":0.0004,"pSD":0.00127,"pScaled":0.00011,"pRank":73,"nSamples":500,"individualID.1":17,"individualID.2":54,"transmission":false,"snpDist":12,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":696,"infectionDiff":2026,"infectionDiffY":5.55068,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"017_055","label":"SNPs","pAvg":0.00152,"pSD":0.00492,"pScaled":0.00047,"pRank":50,"nSamples":500,"individualID.1":17,"individualID.2":55,"transmission":false,"snpDist":12,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":-321,"infectionDiff":1294,"infectionDiffY":3.54521,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"017_056","label":"SNPs","pAvg":0.00191,"pSD":0.006,"pScaled":0.00046,"pRank":46,"nSamples":500,"individualID.1":17,"individualID.2":56,"transmission":false,"snpDist":12,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":103,"infectionDiff":1378,"infectionDiffY":3.77534,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"017_057","label":"SNPs","pAvg":0.00089,"pSD":0.00278,"pScaled":0.00018,"pRank":64,"nSamples":500,"individualID.1":17,"individualID.2":57,"transmission":false,"snpDist":13,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":666,"infectionDiff":2028,"infectionDiffY":5.55616,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"017_058","label":"SNPs","pAvg":0.00081,"pSD":0.00272,"pScaled":0.0008,"pRank":59,"nSamples":500,"individualID.1":17,"individualID.2":58,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":951,"infectionDiff":1717,"infectionDiffY":4.70411,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"017_059","label":"SNPs","pAvg":0.00648,"pSD":0.01987,"pScaled":0.00932,"pRank":23,"nSamples":500,"individualID.1":17,"individualID.2":59,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":331,"infectionDiff":181,"infectionDiffY":0.49589,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"017_060","label":"SNPs","pAvg":0.00133,"pSD":0.00421,"pScaled":0.00064,"pRank":72,"nSamples":500,"individualID.1":17,"individualID.2":60,"transmission":false,"snpDist":12,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":992,"infectionDiff":2359,"infectionDiffY":6.46301,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"017_061","label":"SNPs","pAvg":0.00016,"pSD":0.00054,"pScaled":0.00029,"pRank":62,"nSamples":500,"individualID.1":17,"individualID.2":61,"transmission":false,"snpDist":11,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":785,"infectionDiff":1577,"infectionDiffY":4.32055,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"017_062","label":"SNPs","pAvg":0.05126,"pSD":0.01342,"pScaled":0.01357,"pRank":12,"nSamples":50,"individualID.1":17,"individualID.2":62,"transmission":false,"snpDist":10,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":-480,"infectionDiff":481,"infectionDiffY":1.31781,"timeCat":"2","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"017_063","label":"SNPs","pAvg":0.005,"pSD":0.01571,"pScaled":0.00241,"pRank":20,"nSamples":500,"individualID.1":17,"individualID.2":63,"transmission":false,"snpDist":11,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":-1048,"infectionDiff":276,"infectionDiffY":0.75616,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"017_064","label":"SNPs","pAvg":0.00129,"pSD":0.00415,"pScaled":0.00049,"pRank":44,"nSamples":500,"individualID.1":17,"individualID.2":64,"transmission":false,"snpDist":13,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":-265,"infectionDiff":1258,"infectionDiffY":3.44658,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"017_065","label":"SNPs","pAvg":0.00068,"pSD":0.00219,"pScaled":0.00053,"pRank":48,"nSamples":500,"individualID.1":17,"individualID.2":65,"transmission":false,"snpDist":12,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":-257,"infectionDiff":1191,"infectionDiffY":3.26301,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"017_066","label":"SNPs","pAvg":0.00417,"pSD":0.01318,"pScaled":0.0011,"pRank":37,"nSamples":500,"individualID.1":17,"individualID.2":66,"transmission":false,"snpDist":13,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":-110,"infectionDiff":1337,"infectionDiffY":3.66301,"timeCat":"4","Z1":"0","Z2":"1","Z3":"2","Z4":"1","snpClose":false} {"pairID":"017_067","label":"SNPs","pAvg":0.00093,"pSD":0.00291,"pScaled":0.00024,"pRank":78,"nSamples":500,"individualID.1":17,"individualID.2":67,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1012,"infectionDiff":2423,"infectionDiffY":6.63836,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"017_068","label":"SNPs","pAvg":0.01127,"pSD":0.00293,"pScaled":0.00246,"pRank":30,"nSamples":50,"individualID.1":17,"individualID.2":68,"transmission":false,"snpDist":9,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":618,"infectionDiff":2075,"infectionDiffY":5.68493,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"017_069","label":"SNPs","pAvg":0.00129,"pSD":0.00046,"pScaled":0.00041,"pRank":76,"nSamples":50,"individualID.1":17,"individualID.2":69,"transmission":false,"snpDist":10,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":663,"infectionDiff":2101,"infectionDiffY":5.75616,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"017_070","label":"SNPs","pAvg":0.00645,"pSD":0.02015,"pScaled":0.002,"pRank":32,"nSamples":500,"individualID.1":17,"individualID.2":70,"transmission":false,"snpDist":11,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":-801,"infectionDiff":519,"infectionDiffY":1.42192,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"017_071","label":"SNPs","pAvg":0.00463,"pSD":0.01449,"pScaled":0.00471,"pRank":29,"nSamples":500,"individualID.1":17,"individualID.2":71,"transmission":false,"snpDist":15,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":718,"infectionDiff":778,"infectionDiffY":2.13151,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"017_072","label":"SNPs","pAvg":0.00179,"pSD":0.00555,"pScaled":0.00054,"pRank":38,"nSamples":500,"individualID.1":17,"individualID.2":72,"transmission":false,"snpDist":11,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":-841,"infectionDiff":697,"infectionDiffY":1.90959,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"017_073","label":"SNPs","pAvg":0.00081,"pSD":0.00261,"pScaled":0.0006,"pRank":51,"nSamples":500,"individualID.1":17,"individualID.2":73,"transmission":false,"snpDist":11,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":240,"infectionDiff":1448,"infectionDiffY":3.96712,"timeCat":"4","Z1":"0","Z2":"1","Z3":"2","Z4":"3","snpClose":false} {"pairID":"017_074","label":"SNPs","pAvg":0.00515,"pSD":0.00152,"pScaled":0.00282,"pRank":18,"nSamples":50,"individualID.1":17,"individualID.2":74,"transmission":false,"snpDist":10,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":80,"infectionDiff":828,"infectionDiffY":2.26849,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"017_075","label":"SNPs","pAvg":0.00027,"pSD":0.00088,"pScaled":0.00119,"pRank":71,"nSamples":500,"individualID.1":17,"individualID.2":75,"transmission":false,"snpDist":16,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":746,"infectionDiff":2401,"infectionDiffY":6.57808,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"017_076","label":"SNPs","pAvg":0.0036,"pSD":0.00103,"pScaled":0.00088,"pRank":68,"nSamples":50,"individualID.1":17,"individualID.2":76,"transmission":false,"snpDist":9,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":981,"infectionDiff":2075,"infectionDiffY":5.68493,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"017_077","label":"SNPs","pAvg":0.00452,"pSD":0.00206,"pScaled":0.001,"pRank":54,"nSamples":50,"individualID.1":17,"individualID.2":77,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":134,"infectionDiff":1790,"infectionDiffY":4.90411,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"017_078","label":"SNPs","pAvg":0.01301,"pSD":0.00394,"pScaled":0.00288,"pRank":38,"nSamples":50,"individualID.1":17,"individualID.2":78,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":824,"infectionDiff":2103,"infectionDiffY":5.76164,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"017_079","label":"SNPs","pAvg":0.00094,"pSD":0.00304,"pScaled":0.00047,"pRank":54,"nSamples":500,"individualID.1":17,"individualID.2":79,"transmission":false,"snpDist":13,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":233,"infectionDiff":1386,"infectionDiffY":3.79726,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"017_080","label":"SNPs","pAvg":0.00053,"pSD":0.00171,"pScaled":0.00387,"pRank":43,"nSamples":500,"individualID.1":17,"individualID.2":80,"transmission":false,"snpDist":13,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":242,"infectionDiff":1318,"infectionDiffY":3.61096,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"017_081","label":"SNPs","pAvg":0.00408,"pSD":0.00115,"pScaled":0.00102,"pRank":45,"nSamples":50,"individualID.1":17,"individualID.2":81,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":958,"infectionDiff":2485,"infectionDiffY":6.80822,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"017_082","label":"SNPs","pAvg":0.00724,"pSD":0.00205,"pScaled":0.00158,"pRank":51,"nSamples":50,"individualID.1":17,"individualID.2":82,"transmission":false,"snpDist":10,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":962,"infectionDiff":2563,"infectionDiffY":7.02192,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"017_083","label":"SNPs","pAvg":0.0118,"pSD":0.00334,"pScaled":0.00459,"pRank":26,"nSamples":50,"individualID.1":17,"individualID.2":83,"transmission":false,"snpDist":10,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":738,"infectionDiff":2032,"infectionDiffY":5.56712,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"017_084","label":"SNPs","pAvg":0.00047,"pSD":0.00148,"pScaled":0.00024,"pRank":62,"nSamples":500,"individualID.1":17,"individualID.2":84,"transmission":false,"snpDist":15,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":981,"infectionDiff":2080,"infectionDiffY":5.69863,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"017_085","label":"SNPs","pAvg":0.00036,"pSD":0.00122,"pScaled":0.00012,"pRank":59,"nSamples":500,"individualID.1":17,"individualID.2":85,"transmission":false,"snpDist":13,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":93,"infectionDiff":1745,"infectionDiffY":4.78082,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"017_086","label":"SNPs","pAvg":0.00295,"pSD":0.00132,"pScaled":0.00094,"pRank":33,"nSamples":50,"individualID.1":17,"individualID.2":86,"transmission":false,"snpDist":10,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":-69,"infectionDiff":1373,"infectionDiffY":3.76164,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"017_087","label":"SNPs","pAvg":0.00024,"pSD":0.00077,"pScaled":0.0002,"pRank":60,"nSamples":500,"individualID.1":17,"individualID.2":87,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":465,"infectionDiff":1913,"infectionDiffY":5.2411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"017_088","label":"SNPs","pAvg":0.00648,"pSD":0.00228,"pScaled":0.00125,"pRank":53,"nSamples":50,"individualID.1":17,"individualID.2":88,"transmission":false,"snpDist":9,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":575,"infectionDiff":2248,"infectionDiffY":6.1589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"017_089","label":"SNPs","pAvg":0.00041,"pSD":0.0013,"pScaled":0.00013,"pRank":73,"nSamples":500,"individualID.1":17,"individualID.2":89,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":867,"infectionDiff":2084,"infectionDiffY":5.70959,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"017_090","label":"SNPs","pAvg":0.00042,"pSD":0.0013,"pScaled":0.00011,"pRank":83,"nSamples":500,"individualID.1":17,"individualID.2":90,"transmission":false,"snpDist":15,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":937,"infectionDiff":2310,"infectionDiffY":6.32877,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"017_091","label":"SNPs","pAvg":0.0007,"pSD":0.00221,"pScaled":0.00035,"pRank":62,"nSamples":500,"individualID.1":17,"individualID.2":91,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":958,"infectionDiff":1902,"infectionDiffY":5.21096,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"017_092","label":"SNPs","pAvg":0.00048,"pSD":0.00148,"pScaled":0.00019,"pRank":60,"nSamples":500,"individualID.1":17,"individualID.2":92,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1005,"infectionDiff":2053,"infectionDiffY":5.62466,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"017_093","label":"SNPs","pAvg":0.00066,"pSD":0.00205,"pScaled":0.00018,"pRank":62,"nSamples":500,"individualID.1":17,"individualID.2":93,"transmission":false,"snpDist":15,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":842,"infectionDiff":2278,"infectionDiffY":6.2411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"017_094","label":"SNPs","pAvg":0.00033,"pSD":0.00103,"pScaled":0.00011,"pRank":92,"nSamples":500,"individualID.1":17,"individualID.2":94,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":888,"infectionDiff":2550,"infectionDiffY":6.9863,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"017_095","label":"SNPs","pAvg":0.00024,"pSD":0.00077,"pScaled":0.00012,"pRank":59,"nSamples":500,"individualID.1":17,"individualID.2":95,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":471,"infectionDiff":1982,"infectionDiffY":5.43014,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"017_096","label":"SNPs","pAvg":0.00016,"pSD":0.00051,"pScaled":0.00006,"pRank":86,"nSamples":500,"individualID.1":17,"individualID.2":96,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":566,"infectionDiff":2214,"infectionDiffY":6.06575,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"017_097","label":"SNPs","pAvg":0.00071,"pSD":0.00223,"pScaled":0.00016,"pRank":86,"nSamples":500,"individualID.1":17,"individualID.2":97,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":808,"infectionDiff":2370,"infectionDiffY":6.49315,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"017_098","label":"SNPs","pAvg":0.0008,"pSD":0.00251,"pScaled":0.00023,"pRank":65,"nSamples":500,"individualID.1":17,"individualID.2":98,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":627,"infectionDiff":2143,"infectionDiffY":5.87123,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"017_099","label":"SNPs","pAvg":0.0003,"pSD":0.00095,"pScaled":0.0001,"pRank":68,"nSamples":500,"individualID.1":17,"individualID.2":99,"transmission":false,"snpDist":11,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":610,"infectionDiff":2007,"infectionDiffY":5.49863,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"017_100","label":"SNPs","pAvg":0.00045,"pSD":0.00141,"pScaled":0.00013,"pRank":92,"nSamples":500,"individualID.1":17,"individualID.2":100,"transmission":false,"snpDist":11,"infectionDate.1":"1992-07-24 04:08:37","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1997-03-18 08:56:40","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":809,"infectionDiff":2385,"infectionDiffY":6.53425,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"018_009","label":"SNPs","pAvg":0.00585,"pSD":0.01798,"pScaled":0.02608,"pRank":13,"nSamples":500,"individualID.1":18,"individualID.2":9,"transmission":false,"snpDist":13,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":2076,"infectionDiff":226,"infectionDiffY":0.61918,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"018_023","label":"SNPs","pAvg":0.00947,"pSD":0.00419,"pScaled":0.00421,"pRank":42,"nSamples":50,"individualID.1":18,"individualID.2":23,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":2234,"infectionDiff":1765,"infectionDiffY":4.83562,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"018_026","label":"SNPs","pAvg":0.01501,"pSD":0.00451,"pScaled":0.00527,"pRank":13,"nSamples":50,"individualID.1":18,"individualID.2":26,"transmission":false,"snpDist":8,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1838,"infectionDiff":1062,"infectionDiffY":2.90959,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"018_027","label":"SNPs","pAvg":0.00778,"pSD":0.00382,"pScaled":0.00278,"pRank":54,"nSamples":50,"individualID.1":18,"individualID.2":27,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":2010,"infectionDiff":1651,"infectionDiffY":4.52329,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"018_028","label":"SNPs","pAvg":0.04116,"pSD":0.0086,"pScaled":0.0115,"pRank":15,"nSamples":50,"individualID.1":18,"individualID.2":28,"transmission":false,"snpDist":7,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":1227,"infectionDiff":476,"infectionDiffY":1.30411,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"018_033","label":"SNPs","pAvg":0.01145,"pSD":0.00347,"pScaled":0.00522,"pRank":14,"nSamples":50,"individualID.1":18,"individualID.2":33,"transmission":false,"snpDist":8,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":1455,"infectionDiff":1333,"infectionDiffY":3.65205,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"018_035","label":"SNPs","pAvg":0.09626,"pSD":0.01517,"pScaled":0.02503,"pRank":5,"nSamples":50,"individualID.1":18,"individualID.2":35,"transmission":false,"snpDist":7,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":1417,"infectionDiff":130,"infectionDiffY":0.35616,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"018_036","label":"SNPs","pAvg":0.02542,"pSD":0.00706,"pScaled":0.00687,"pRank":21,"nSamples":50,"individualID.1":18,"individualID.2":36,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":1216,"infectionDiff":941,"infectionDiffY":2.57808,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"018_037","label":"SNPs","pAvg":0.02565,"pSD":0.00637,"pScaled":0.02587,"pRank":15,"nSamples":500,"individualID.1":18,"individualID.2":37,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":1603,"infectionDiff":463,"infectionDiffY":1.26849,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"018_038","label":"SNPs","pAvg":0.02681,"pSD":0.00545,"pScaled":0.03183,"pRank":11,"nSamples":500,"individualID.1":18,"individualID.2":38,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":665,"infectionDiff":108,"infectionDiffY":0.29589,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"018_040","label":"SNPs","pAvg":0.01862,"pSD":0.00533,"pScaled":0.01666,"pRank":18,"nSamples":500,"individualID.1":18,"individualID.2":40,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":1239,"infectionDiff":1197,"infectionDiffY":3.27945,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"018_045","label":"SNPs","pAvg":0.05077,"pSD":0.01434,"pScaled":0.03073,"pRank":3,"nSamples":50,"individualID.1":18,"individualID.2":45,"transmission":false,"snpDist":9,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":1612,"infectionDiff":708,"infectionDiffY":1.93973,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"018_047","label":"SNPs","pAvg":0.07051,"pSD":0.01728,"pScaled":0.01521,"pRank":10,"nSamples":50,"individualID.1":18,"individualID.2":47,"transmission":false,"snpDist":7,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":463,"infectionDiff":393,"infectionDiffY":1.07671,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"018_051","label":"SNPs","pAvg":0.09413,"pSD":0.02014,"pScaled":0.04459,"pRank":3,"nSamples":50,"individualID.1":18,"individualID.2":51,"transmission":false,"snpDist":8,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":250,"infectionDiff":185,"infectionDiffY":0.50685,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"018_052","label":"SNPs","pAvg":0.00993,"pSD":0.00361,"pScaled":0.00373,"pRank":31,"nSamples":50,"individualID.1":18,"individualID.2":52,"transmission":false,"snpDist":9,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":2083,"infectionDiff":1213,"infectionDiffY":3.32329,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"018_053","label":"SNPs","pAvg":0.00254,"pSD":0.00786,"pScaled":0.0017,"pRank":37,"nSamples":500,"individualID.1":18,"individualID.2":53,"transmission":false,"snpDist":11,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":770,"infectionDiff":677,"infectionDiffY":1.85479,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"018_054","label":"SNPs","pAvg":0.00515,"pSD":0.00209,"pScaled":0.00134,"pRank":42,"nSamples":50,"individualID.1":18,"individualID.2":54,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1941,"infectionDiff":1602,"infectionDiffY":4.38904,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"018_055","label":"SNPs","pAvg":0.00567,"pSD":0.01772,"pScaled":0.00174,"pRank":31,"nSamples":500,"individualID.1":18,"individualID.2":55,"transmission":false,"snpDist":11,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":924,"infectionDiff":869,"infectionDiffY":2.38082,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"018_056","label":"SNPs","pAvg":0.00146,"pSD":0.00456,"pScaled":0.00035,"pRank":52,"nSamples":500,"individualID.1":18,"individualID.2":56,"transmission":false,"snpDist":11,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":1348,"infectionDiff":954,"infectionDiffY":2.6137,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"018_057","label":"SNPs","pAvg":0.00044,"pSD":0.00145,"pScaled":0.00009,"pRank":70,"nSamples":500,"individualID.1":18,"individualID.2":57,"transmission":false,"snpDist":12,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1911,"infectionDiff":1604,"infectionDiffY":4.39452,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"018_058","label":"SNPs","pAvg":0.00975,"pSD":0.00324,"pScaled":0.00962,"pRank":28,"nSamples":500,"individualID.1":18,"individualID.2":58,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":2196,"infectionDiff":1292,"infectionDiffY":3.53973,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"018_060","label":"SNPs","pAvg":0.00087,"pSD":0.0027,"pScaled":0.00042,"pRank":78,"nSamples":500,"individualID.1":18,"individualID.2":60,"transmission":false,"snpDist":11,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":2238,"infectionDiff":1934,"infectionDiffY":5.29863,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"018_061","label":"SNPs","pAvg":0.00351,"pSD":0.00128,"pScaled":0.00666,"pRank":34,"nSamples":500,"individualID.1":18,"individualID.2":61,"transmission":false,"snpDist":10,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":2031,"infectionDiff":1152,"infectionDiffY":3.15616,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"018_062","label":"SNPs","pAvg":0.0875,"pSD":0.01653,"pScaled":0.02316,"pRank":7,"nSamples":50,"individualID.1":18,"individualID.2":62,"transmission":false,"snpDist":7,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":766,"infectionDiff":57,"infectionDiffY":0.15616,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"018_064","label":"SNPs","pAvg":0.00192,"pSD":0.00603,"pScaled":0.00073,"pRank":41,"nSamples":500,"individualID.1":18,"individualID.2":64,"transmission":false,"snpDist":12,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":980,"infectionDiff":833,"infectionDiffY":2.28219,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"018_065","label":"SNPs","pAvg":0.00566,"pSD":0.00204,"pScaled":0.00436,"pRank":22,"nSamples":50,"individualID.1":18,"individualID.2":65,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":988,"infectionDiff":766,"infectionDiffY":2.09863,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"018_066","label":"SNPs","pAvg":0.0032,"pSD":0.00995,"pScaled":0.00084,"pRank":41,"nSamples":500,"individualID.1":18,"individualID.2":66,"transmission":false,"snpDist":12,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":1135,"infectionDiff":913,"infectionDiffY":2.50137,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"018_067","label":"SNPs","pAvg":0.00459,"pSD":0.00106,"pScaled":0.00116,"pRank":58,"nSamples":50,"individualID.1":18,"individualID.2":67,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":2257,"infectionDiff":1998,"infectionDiffY":5.47397,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"018_068","label":"SNPs","pAvg":0.008,"pSD":0.00376,"pScaled":0.00175,"pRank":47,"nSamples":50,"individualID.1":18,"individualID.2":68,"transmission":false,"snpDist":8,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":1863,"infectionDiff":1650,"infectionDiffY":4.52055,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"018_069","label":"SNPs","pAvg":0.00176,"pSD":0.00076,"pScaled":0.00057,"pRank":54,"nSamples":50,"individualID.1":18,"individualID.2":69,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1908,"infectionDiff":1677,"infectionDiffY":4.59452,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"018_070","label":"SNPs","pAvg":0.04482,"pSD":0.00998,"pScaled":0.01388,"pRank":10,"nSamples":50,"individualID.1":18,"individualID.2":70,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":444,"infectionDiff":94,"infectionDiffY":0.25753,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"018_071","label":"SNPs","pAvg":0.04453,"pSD":0.00951,"pScaled":0.04531,"pRank":7,"nSamples":500,"individualID.1":18,"individualID.2":71,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":1963,"infectionDiff":353,"infectionDiffY":0.96712,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"018_072","label":"SNPs","pAvg":0.0576,"pSD":0.01179,"pScaled":0.01753,"pRank":5,"nSamples":50,"individualID.1":18,"individualID.2":72,"transmission":false,"snpDist":8,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":404,"infectionDiff":272,"infectionDiffY":0.74521,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"018_073","label":"SNPs","pAvg":0.00602,"pSD":0.00216,"pScaled":0.00443,"pRank":17,"nSamples":50,"individualID.1":18,"individualID.2":73,"transmission":false,"snpDist":10,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":1485,"infectionDiff":1023,"infectionDiffY":2.80274,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"018_074","label":"SNPs","pAvg":0.00691,"pSD":0.00181,"pScaled":0.00379,"pRank":13,"nSamples":50,"individualID.1":18,"individualID.2":74,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":1325,"infectionDiff":403,"infectionDiffY":1.10411,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"018_075","label":"SNPs","pAvg":0.00018,"pSD":0.00058,"pScaled":0.0008,"pRank":76,"nSamples":500,"individualID.1":18,"individualID.2":75,"transmission":false,"snpDist":15,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1991,"infectionDiff":1977,"infectionDiffY":5.41644,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"018_076","label":"SNPs","pAvg":0.0103,"pSD":0.00417,"pScaled":0.00252,"pRank":33,"nSamples":50,"individualID.1":18,"individualID.2":76,"transmission":false,"snpDist":8,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":2226,"infectionDiff":1650,"infectionDiffY":4.52055,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"018_077","label":"SNPs","pAvg":0.00939,"pSD":0.00296,"pScaled":0.00208,"pRank":30,"nSamples":50,"individualID.1":18,"individualID.2":77,"transmission":false,"snpDist":7,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":1379,"infectionDiff":1365,"infectionDiffY":3.73973,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"018_078","label":"SNPs","pAvg":0.00764,"pSD":0.00309,"pScaled":0.00169,"pRank":61,"nSamples":50,"individualID.1":18,"individualID.2":78,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":2070,"infectionDiff":1678,"infectionDiffY":4.59726,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"018_079","label":"SNPs","pAvg":0.01553,"pSD":0.00491,"pScaled":0.00781,"pRank":11,"nSamples":50,"individualID.1":18,"individualID.2":79,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":1478,"infectionDiff":962,"infectionDiffY":2.63562,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"018_080","label":"SNPs","pAvg":0.00058,"pSD":0.00183,"pScaled":0.00424,"pRank":42,"nSamples":500,"individualID.1":18,"individualID.2":80,"transmission":false,"snpDist":12,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":1487,"infectionDiff":894,"infectionDiffY":2.44932,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"018_081","label":"SNPs","pAvg":0.00188,"pSD":0.00059,"pScaled":0.00047,"pRank":80,"nSamples":50,"individualID.1":18,"individualID.2":81,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":2203,"infectionDiff":2061,"infectionDiffY":5.64658,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"018_082","label":"SNPs","pAvg":0.00754,"pSD":0.00214,"pScaled":0.00164,"pRank":43,"nSamples":50,"individualID.1":18,"individualID.2":82,"transmission":false,"snpDist":9,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":2207,"infectionDiff":2138,"infectionDiffY":5.85753,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"018_083","label":"SNPs","pAvg":0.00824,"pSD":0.00432,"pScaled":0.00321,"pRank":42,"nSamples":50,"individualID.1":18,"individualID.2":83,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1983,"infectionDiff":1608,"infectionDiffY":4.40548,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"018_084","label":"SNPs","pAvg":0.00043,"pSD":0.0014,"pScaled":0.00022,"pRank":64,"nSamples":500,"individualID.1":18,"individualID.2":84,"transmission":false,"snpDist":12,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":2226,"infectionDiff":1656,"infectionDiffY":4.53699,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"018_085","label":"SNPs","pAvg":0.01103,"pSD":0.00324,"pScaled":0.00378,"pRank":7,"nSamples":50,"individualID.1":18,"individualID.2":85,"transmission":false,"snpDist":10,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":1338,"infectionDiff":1321,"infectionDiffY":3.61918,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"018_086","label":"SNPs","pAvg":0.0056,"pSD":0.00179,"pScaled":0.00178,"pRank":19,"nSamples":50,"individualID.1":18,"individualID.2":86,"transmission":false,"snpDist":9,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":1176,"infectionDiff":949,"infectionDiffY":2.6,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"018_087","label":"SNPs","pAvg":0.00019,"pSD":0.00062,"pScaled":0.00015,"pRank":72,"nSamples":500,"individualID.1":18,"individualID.2":87,"transmission":false,"snpDist":13,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":1711,"infectionDiff":1488,"infectionDiffY":4.07671,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"018_088","label":"SNPs","pAvg":0.00886,"pSD":0.00389,"pScaled":0.00171,"pRank":32,"nSamples":50,"individualID.1":18,"individualID.2":88,"transmission":false,"snpDist":8,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":1820,"infectionDiff":1823,"infectionDiffY":4.99452,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"018_089","label":"SNPs","pAvg":0.00052,"pSD":0.00173,"pScaled":0.00017,"pRank":63,"nSamples":500,"individualID.1":18,"individualID.2":89,"transmission":false,"snpDist":11,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":2112,"infectionDiff":1659,"infectionDiffY":4.54521,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"018_090","label":"SNPs","pAvg":0.00535,"pSD":0.00124,"pScaled":0.00139,"pRank":23,"nSamples":50,"individualID.1":18,"individualID.2":90,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":2183,"infectionDiff":1886,"infectionDiffY":5.16712,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"018_091","label":"SNPs","pAvg":0.00089,"pSD":0.00294,"pScaled":0.00045,"pRank":52,"nSamples":500,"individualID.1":18,"individualID.2":91,"transmission":false,"snpDist":11,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":2204,"infectionDiff":1477,"infectionDiffY":4.04658,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"018_092","label":"SNPs","pAvg":0.00044,"pSD":0.00144,"pScaled":0.00018,"pRank":65,"nSamples":500,"individualID.1":18,"individualID.2":92,"transmission":false,"snpDist":11,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":2251,"infectionDiff":1628,"infectionDiffY":4.46027,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"018_093","label":"SNPs","pAvg":0.00059,"pSD":0.00183,"pScaled":0.00016,"pRank":68,"nSamples":500,"individualID.1":18,"individualID.2":93,"transmission":false,"snpDist":12,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":2088,"infectionDiff":1854,"infectionDiffY":5.07945,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"018_094","label":"SNPs","pAvg":0.00179,"pSD":0.0005,"pScaled":0.00059,"pRank":60,"nSamples":50,"individualID.1":18,"individualID.2":94,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":2134,"infectionDiff":2125,"infectionDiffY":5.82192,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"018_095","label":"SNPs","pAvg":0.00019,"pSD":0.00066,"pScaled":0.0001,"pRank":73,"nSamples":500,"individualID.1":18,"individualID.2":95,"transmission":false,"snpDist":13,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":1716,"infectionDiff":1557,"infectionDiffY":4.26575,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"018_096","label":"SNPs","pAvg":0.00178,"pSD":0.00083,"pScaled":0.00062,"pRank":56,"nSamples":50,"individualID.1":18,"individualID.2":96,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":1811,"infectionDiff":1789,"infectionDiffY":4.90137,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"018_097","label":"SNPs","pAvg":0.00953,"pSD":0.00252,"pScaled":0.00214,"pRank":23,"nSamples":50,"individualID.1":18,"individualID.2":97,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":2054,"infectionDiff":1945,"infectionDiffY":5.32877,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"018_098","label":"SNPs","pAvg":0.0005,"pSD":0.00163,"pScaled":0.00014,"pRank":71,"nSamples":500,"individualID.1":18,"individualID.2":98,"transmission":false,"snpDist":11,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":1873,"infectionDiff":1718,"infectionDiffY":4.70685,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"018_099","label":"SNPs","pAvg":0.00152,"pSD":0.00071,"pScaled":0.00052,"pRank":52,"nSamples":50,"individualID.1":18,"individualID.2":99,"transmission":false,"snpDist":10,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":1855,"infectionDiff":1582,"infectionDiffY":4.33425,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"018_100","label":"SNPs","pAvg":0.00898,"pSD":0.00161,"pScaled":0.00265,"pRank":42,"nSamples":50,"individualID.1":18,"individualID.2":100,"transmission":false,"infectionDate.1":"1993-09-21 18:45:42","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1993-10-20 00:50:43","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":2055,"infectionDiff":1960,"infectionDiffY":5.36986,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"019_003","label":"SNPs","pAvg":0.01621,"pSD":0.0044,"pScaled":0.05115,"pRank":9,"nSamples":500,"individualID.1":19,"individualID.2":3,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1990-12-11 19:24:08","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1998-10-30 22:42:57","sampleDiff":2592,"infectionDiff":1095,"infectionDiffY":3,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"019_006","label":"SNPs","pAvg":0.00515,"pSD":0.00204,"pScaled":0.00329,"pRank":23,"nSamples":50,"individualID.1":19,"individualID.2":6,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":308,"infectionDiff":1653,"infectionDiffY":4.52877,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_009","label":"SNPs","pAvg":0.00053,"pSD":0.00164,"pScaled":0.00235,"pRank":40,"nSamples":500,"individualID.1":19,"individualID.2":9,"transmission":false,"snpDist":12,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":2831,"infectionDiff":2336,"infectionDiffY":6.4,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"019_010","label":"SNPs","pAvg":0.01655,"pSD":0.00533,"pScaled":0.01199,"pRank":14,"nSamples":50,"individualID.1":19,"individualID.2":10,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":283,"infectionDiff":1377,"infectionDiffY":3.7726,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_011","label":"SNPs","pAvg":0.04971,"pSD":0.01008,"pScaled":0.01987,"pRank":4,"nSamples":50,"individualID.1":19,"individualID.2":11,"transmission":false,"snpDist":5,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1988-04-18 02:31:21","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1991-10-25 12:28:14","sampleDiff":29,"infectionDiff":128,"infectionDiffY":0.35068,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_012","label":"SNPs","pAvg":0.05135,"pSD":0.01015,"pScaled":0.01287,"pRank":8,"nSamples":50,"individualID.1":19,"individualID.2":12,"transmission":false,"snpDist":4,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1988-04-12 22:57:51","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1988-09-04 19:08:48","sampleDiff":-1116,"infectionDiff":123,"infectionDiffY":0.33699,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_014","label":"SNPs","pAvg":0.00713,"pSD":0.00218,"pScaled":0.00392,"pRank":27,"nSamples":50,"individualID.1":19,"individualID.2":14,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":862,"infectionDiff":1914,"infectionDiffY":5.24384,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_015","label":"SNPs","pAvg":0.0431,"pSD":0.00927,"pScaled":0.0169,"pRank":5,"nSamples":50,"individualID.1":19,"individualID.2":15,"transmission":false,"snpDist":5,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1988-08-20 08:24:18","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1992-08-15 08:05:31","sampleDiff":324,"infectionDiff":252,"infectionDiffY":0.69041,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_016","label":"SNPs","pAvg":0.02416,"pSD":0.00647,"pScaled":0.06021,"pRank":10,"nSamples":500,"individualID.1":19,"individualID.2":16,"transmission":false,"snpDist":7,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1989-04-18 04:17:39","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1995-12-16 04:24:53","sampleDiff":1542,"infectionDiff":493,"infectionDiffY":1.35068,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_017","label":"SNPs","pAvg":0.00791,"pSD":0.00369,"pScaled":0.01103,"pRank":20,"nSamples":500,"individualID.1":19,"individualID.2":17,"transmission":false,"snpDist":8,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":2000,"infectionDiff":1686,"infectionDiffY":4.61918,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"019_018","label":"SNPs","pAvg":0.00885,"pSD":0.00232,"pScaled":0.01003,"pRank":26,"nSamples":500,"individualID.1":19,"individualID.2":18,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":755,"infectionDiff":2110,"infectionDiffY":5.78082,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_021","label":"SNPs","pAvg":0.00769,"pSD":0.00215,"pScaled":0.00734,"pRank":28,"nSamples":500,"individualID.1":19,"individualID.2":21,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":2200,"infectionDiff":2108,"infectionDiffY":5.77534,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_022","label":"SNPs","pAvg":0.0423,"pSD":0.00906,"pScaled":0.08253,"pRank":4,"nSamples":500,"individualID.1":19,"individualID.2":22,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1989-06-06 04:07:23","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1991-10-22 14:29:51","sampleDiff":26,"infectionDiff":542,"infectionDiffY":1.48493,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"019_023","label":"SNPs","pAvg":0.00954,"pSD":0.00236,"pScaled":0.00425,"pRank":39,"nSamples":50,"individualID.1":19,"individualID.2":23,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":2989,"infectionDiff":3875,"infectionDiffY":10.61644,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"019_024","label":"SNPs","pAvg":0.90088,"pSD":0.29765,"pScaled":0.69631,"pRank":1,"nSamples":500,"individualID.1":19,"individualID.2":24,"transmission":true,"snpDist":1,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1991-02-07 21:59:42","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1992-10-05 23:05:30","sampleDiff":376,"infectionDiff":1154,"infectionDiffY":3.16164,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"019_025","label":"SNPs","pAvg":0.04121,"pSD":0.008,"pScaled":0.00935,"pRank":12,"nSamples":50,"individualID.1":19,"individualID.2":25,"transmission":false,"snpDist":4,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1989-07-09 14:49:21","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1990-01-24 23:05:50","sampleDiff":-609,"infectionDiff":575,"infectionDiffY":1.57534,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"019_026","label":"SNPs","pAvg":0.00444,"pSD":0.00094,"pScaled":0.00156,"pRank":46,"nSamples":50,"individualID.1":19,"individualID.2":26,"transmission":false,"snpDist":7,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":2593,"infectionDiff":3172,"infectionDiffY":8.69041,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_027","label":"SNPs","pAvg":0.00808,"pSD":0.00221,"pScaled":0.00288,"pRank":49,"nSamples":50,"individualID.1":19,"individualID.2":27,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":2765,"infectionDiff":3761,"infectionDiffY":10.30411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_028","label":"SNPs","pAvg":0.00948,"pSD":0.00228,"pScaled":0.00265,"pRank":38,"nSamples":50,"individualID.1":19,"individualID.2":28,"transmission":false,"snpDist":6,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":1982,"infectionDiff":2586,"infectionDiffY":7.08493,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"019_029","label":"SNPs","pAvg":0.01862,"pSD":0.00533,"pScaled":0.04597,"pRank":8,"nSamples":500,"individualID.1":19,"individualID.2":29,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1990-12-27 23:28:20","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1992-03-01 23:20:54","sampleDiff":158,"infectionDiff":1112,"infectionDiffY":3.04658,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_030","label":"SNPs","pAvg":0.0042,"pSD":0.00188,"pScaled":0.00294,"pRank":24,"nSamples":50,"individualID.1":19,"individualID.2":30,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":233,"infectionDiff":1593,"infectionDiffY":4.36438,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_031","label":"SNPs","pAvg":0.01985,"pSD":0.00552,"pScaled":0.03275,"pRank":10,"nSamples":500,"individualID.1":19,"individualID.2":31,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1991-01-03 16:49:07","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1991-07-17 03:37:35","sampleDiff":-71,"infectionDiff":1118,"infectionDiffY":3.06301,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"019_032","label":"SNPs","pAvg":0.00741,"pSD":0.00342,"pScaled":0.00505,"pRank":19,"nSamples":50,"individualID.1":19,"individualID.2":32,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":1663,"infectionDiff":1539,"infectionDiffY":4.21644,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"019_033","label":"SNPs","pAvg":0.00507,"pSD":0.00129,"pScaled":0.00231,"pRank":34,"nSamples":50,"individualID.1":19,"individualID.2":33,"transmission":false,"snpDist":3,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":2210,"infectionDiff":3443,"infectionDiffY":9.43288,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_034","label":"SNPs","pAvg":0.01118,"pSD":0.00347,"pScaled":0.03757,"pRank":8,"nSamples":500,"individualID.1":19,"individualID.2":34,"transmission":false,"snpDist":10,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":1232,"infectionDiff":1158,"infectionDiffY":3.1726,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_035","label":"SNPs","pAvg":0.00868,"pSD":0.0023,"pScaled":0.00226,"pRank":35,"nSamples":50,"individualID.1":19,"individualID.2":35,"transmission":false,"snpDist":6,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":2172,"infectionDiff":2241,"infectionDiffY":6.13973,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_036","label":"SNPs","pAvg":0.00755,"pSD":0.0019,"pScaled":0.00204,"pRank":50,"nSamples":50,"individualID.1":19,"individualID.2":36,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":1971,"infectionDiff":3051,"infectionDiffY":8.3589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"019_037","label":"SNPs","pAvg":0.00559,"pSD":0.00138,"pScaled":0.00564,"pRank":32,"nSamples":500,"individualID.1":19,"individualID.2":37,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":2358,"infectionDiff":2573,"infectionDiffY":7.04932,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"019_038","label":"SNPs","pAvg":0.00451,"pSD":0.00102,"pScaled":0.00536,"pRank":28,"nSamples":500,"individualID.1":19,"individualID.2":38,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":1420,"infectionDiff":2218,"infectionDiffY":6.07671,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_039","label":"SNPs","pAvg":0.00042,"pSD":0.00138,"pScaled":0.00091,"pRank":28,"nSamples":500,"individualID.1":19,"individualID.2":39,"transmission":false,"snpDist":12,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":1585,"infectionDiff":1664,"infectionDiffY":4.5589,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"019_040","label":"SNPs","pAvg":0.00885,"pSD":0.00232,"pScaled":0.00792,"pRank":34,"nSamples":500,"individualID.1":19,"individualID.2":40,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":1993,"infectionDiff":3307,"infectionDiffY":9.06027,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_041","label":"SNPs","pAvg":0.00501,"pSD":0.0021,"pScaled":0.01302,"pRank":19,"nSamples":500,"individualID.1":19,"individualID.2":41,"transmission":false,"snpDist":10,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":2843,"infectionDiff":1508,"infectionDiffY":4.13151,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_042","label":"SNPs","pAvg":0.01835,"pSD":0.00575,"pScaled":0.00677,"pRank":12,"nSamples":50,"individualID.1":19,"individualID.2":42,"transmission":false,"snpDist":6,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":247,"infectionDiff":1159,"infectionDiffY":3.17534,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_043","label":"SNPs","pAvg":0.00942,"pSD":0.00232,"pScaled":0.01271,"pRank":20,"nSamples":500,"individualID.1":19,"individualID.2":43,"transmission":false,"snpDist":4,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":2968,"infectionDiff":1926,"infectionDiffY":5.27671,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"019_044","label":"SNPs","pAvg":0.59399,"pSD":0.48922,"pScaled":0.15981,"pRank":5,"nSamples":122,"individualID.1":19,"individualID.2":44,"transmission":false,"snpDist":1,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":589,"infectionDiff":1828,"infectionDiffY":5.00822,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":true} {"pairID":"019_045","label":"SNPs","pAvg":0.00598,"pSD":0.00142,"pScaled":0.00362,"pRank":34,"nSamples":50,"individualID.1":19,"individualID.2":45,"transmission":false,"snpDist":4,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":2367,"infectionDiff":2818,"infectionDiffY":7.72055,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"019_046","label":"SNPs","pAvg":0.00543,"pSD":0.0023,"pScaled":0.00314,"pRank":27,"nSamples":50,"individualID.1":19,"individualID.2":46,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":1272,"infectionDiff":1773,"infectionDiffY":4.85753,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"019_047","label":"SNPs","pAvg":0.47813,"pSD":0.49772,"pScaled":0.10313,"pRank":6,"nSamples":95,"individualID.1":19,"individualID.2":47,"transmission":false,"snpDist":2,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":1218,"infectionDiff":2504,"infectionDiffY":6.86027,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1","snpClose":true} {"pairID":"019_048","label":"SNPs","pAvg":0.00463,"pSD":0.00106,"pScaled":0.00204,"pRank":30,"nSamples":50,"individualID.1":19,"individualID.2":48,"transmission":false,"snpDist":3,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":1501,"infectionDiff":2038,"infectionDiffY":5.58356,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"019_049","label":"SNPs","pAvg":0.00877,"pSD":0.00422,"pScaled":0.00574,"pRank":16,"nSamples":50,"individualID.1":19,"individualID.2":49,"transmission":false,"snpDist":3,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":1236,"infectionDiff":1656,"infectionDiffY":4.53699,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_050","label":"SNPs","pAvg":0.00975,"pSD":0.00324,"pScaled":0.04256,"pRank":8,"nSamples":500,"individualID.1":19,"individualID.2":50,"transmission":false,"snpDist":7,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":1091,"infectionDiff":1328,"infectionDiffY":3.63836,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_051","label":"SNPs","pAvg":0.00929,"pSD":0.00207,"pScaled":0.0044,"pRank":37,"nSamples":50,"individualID.1":19,"individualID.2":51,"transmission":false,"snpDist":7,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":1005,"infectionDiff":2296,"infectionDiffY":6.29041,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"019_052","label":"SNPs","pAvg":0.00454,"pSD":0.0011,"pScaled":0.0017,"pRank":48,"nSamples":50,"individualID.1":19,"individualID.2":52,"transmission":false,"snpDist":8,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":2837,"infectionDiff":3323,"infectionDiffY":9.10411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_053","label":"SNPs","pAvg":0.00547,"pSD":0.0013,"pScaled":0.00365,"pRank":26,"nSamples":50,"individualID.1":19,"individualID.2":53,"transmission":false,"snpDist":10,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":1525,"infectionDiff":2788,"infectionDiffY":7.63836,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_054","label":"SNPs","pAvg":0.00543,"pSD":0.00143,"pScaled":0.00141,"pRank":36,"nSamples":50,"individualID.1":19,"individualID.2":54,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":2696,"infectionDiff":3712,"infectionDiffY":10.16986,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_055","label":"SNPs","pAvg":0.00909,"pSD":0.00254,"pScaled":0.00279,"pRank":20,"nSamples":50,"individualID.1":19,"individualID.2":55,"transmission":false,"snpDist":10,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":1679,"infectionDiff":2980,"infectionDiffY":8.16438,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_056","label":"SNPs","pAvg":0.00445,"pSD":0.00098,"pScaled":0.00106,"pRank":35,"nSamples":50,"individualID.1":19,"individualID.2":56,"transmission":false,"snpDist":10,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":2103,"infectionDiff":3064,"infectionDiffY":8.39452,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_057","label":"SNPs","pAvg":0.00047,"pSD":0.00143,"pScaled":0.00009,"pRank":68,"nSamples":500,"individualID.1":19,"individualID.2":57,"transmission":false,"snpDist":11,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":2666,"infectionDiff":3714,"infectionDiffY":10.17534,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"019_058","label":"SNPs","pAvg":0.00451,"pSD":0.00102,"pScaled":0.00445,"pRank":42,"nSamples":500,"individualID.1":19,"individualID.2":58,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":2951,"infectionDiff":3403,"infectionDiffY":9.32329,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_059","label":"SNPs","pAvg":0.00818,"pSD":0.00214,"pScaled":0.01176,"pRank":21,"nSamples":500,"individualID.1":19,"individualID.2":59,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":2331,"infectionDiff":1867,"infectionDiffY":5.11507,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"019_060","label":"SNPs","pAvg":0.00872,"pSD":0.00203,"pScaled":0.00423,"pRank":39,"nSamples":50,"individualID.1":19,"individualID.2":60,"transmission":false,"snpDist":10,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":2993,"infectionDiff":4045,"infectionDiffY":11.08219,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_061","label":"SNPs","pAvg":0.00162,"pSD":0.00047,"pScaled":0.00308,"pRank":41,"nSamples":500,"individualID.1":19,"individualID.2":61,"transmission":false,"snpDist":9,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":2786,"infectionDiff":3263,"infectionDiffY":8.93973,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"019_062","label":"SNPs","pAvg":0.68608,"pSD":0.46283,"pScaled":0.18159,"pRank":4,"nSamples":158,"individualID.1":19,"individualID.2":62,"transmission":false,"snpDist":2,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":1520,"infectionDiff":2167,"infectionDiffY":5.93699,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1","snpClose":true} {"pairID":"019_063","label":"SNPs","pAvg":0.00455,"pSD":0.00087,"pScaled":0.00219,"pRank":22,"nSamples":50,"individualID.1":19,"individualID.2":63,"transmission":false,"snpDist":3,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":952,"infectionDiff":1962,"infectionDiffY":5.37534,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_064","label":"SNPs","pAvg":0.00058,"pSD":0.0018,"pScaled":0.00022,"pRank":53,"nSamples":500,"individualID.1":19,"individualID.2":64,"transmission":false,"snpDist":11,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":1735,"infectionDiff":2944,"infectionDiffY":8.06575,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"019_065","label":"SNPs","pAvg":0.00166,"pSD":0.00053,"pScaled":0.00128,"pRank":38,"nSamples":50,"individualID.1":19,"individualID.2":65,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":1743,"infectionDiff":2877,"infectionDiffY":7.88219,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"019_066","label":"SNPs","pAvg":0.00095,"pSD":0.00296,"pScaled":0.00025,"pRank":55,"nSamples":500,"individualID.1":19,"individualID.2":66,"transmission":false,"snpDist":11,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":1890,"infectionDiff":3023,"infectionDiffY":8.28219,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"019_067","label":"SNPs","pAvg":0.00459,"pSD":0.00106,"pScaled":0.00116,"pRank":58,"nSamples":50,"individualID.1":19,"individualID.2":67,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":3012,"infectionDiff":4109,"infectionDiffY":11.25753,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_068","label":"SNPs","pAvg":0.00788,"pSD":0.00209,"pScaled":0.00172,"pRank":49,"nSamples":50,"individualID.1":19,"individualID.2":68,"transmission":false,"snpDist":7,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":2618,"infectionDiff":3760,"infectionDiffY":10.30137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"019_069","label":"SNPs","pAvg":0.0017,"pSD":0.00046,"pScaled":0.00055,"pRank":58,"nSamples":50,"individualID.1":19,"individualID.2":69,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":2663,"infectionDiff":3787,"infectionDiffY":10.37534,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"019_070","label":"SNPs","pAvg":0.00787,"pSD":0.00205,"pScaled":0.00244,"pRank":28,"nSamples":50,"individualID.1":19,"individualID.2":70,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":1199,"infectionDiff":2205,"infectionDiffY":6.0411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_071","label":"SNPs","pAvg":0.00769,"pSD":0.00215,"pScaled":0.00782,"pRank":26,"nSamples":500,"individualID.1":19,"individualID.2":71,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":2718,"infectionDiff":2463,"infectionDiffY":6.74795,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_072","label":"SNPs","pAvg":0.00519,"pSD":0.00134,"pScaled":0.00158,"pRank":27,"nSamples":50,"individualID.1":19,"individualID.2":72,"transmission":false,"snpDist":3,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":1159,"infectionDiff":2382,"infectionDiffY":6.52603,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_073","label":"SNPs","pAvg":0.00194,"pSD":0.00057,"pScaled":0.00143,"pRank":36,"nSamples":50,"individualID.1":19,"individualID.2":73,"transmission":false,"snpDist":9,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":2240,"infectionDiff":3134,"infectionDiffY":8.5863,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"019_074","label":"SNPs","pAvg":0.00149,"pSD":0.00046,"pScaled":0.00082,"pRank":34,"nSamples":50,"individualID.1":19,"individualID.2":74,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":2080,"infectionDiff":2514,"infectionDiffY":6.88767,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"019_075","label":"SNPs","pAvg":0.0002,"pSD":0.00061,"pScaled":0.00085,"pRank":73,"nSamples":500,"individualID.1":19,"individualID.2":75,"transmission":false,"snpDist":14,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":2746,"infectionDiff":4087,"infectionDiffY":11.19726,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"019_076","label":"SNPs","pAvg":0.0049,"pSD":0.00125,"pScaled":0.0012,"pRank":56,"nSamples":50,"individualID.1":19,"individualID.2":76,"transmission":false,"snpDist":7,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":2981,"infectionDiff":3760,"infectionDiffY":10.30137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_077","label":"SNPs","pAvg":0.00781,"pSD":0.00162,"pScaled":0.00173,"pRank":36,"nSamples":50,"individualID.1":19,"individualID.2":77,"transmission":false,"snpDist":6,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":2134,"infectionDiff":3476,"infectionDiffY":9.52329,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"019_078","label":"SNPs","pAvg":0.00852,"pSD":0.00217,"pScaled":0.00189,"pRank":55,"nSamples":50,"individualID.1":19,"individualID.2":78,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":2825,"infectionDiff":3788,"infectionDiffY":10.37808,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_079","label":"SNPs","pAvg":0.00455,"pSD":0.00101,"pScaled":0.00229,"pRank":25,"nSamples":50,"individualID.1":19,"individualID.2":79,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":2233,"infectionDiff":3072,"infectionDiffY":8.41644,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_080","label":"SNPs","pAvg":0.00018,"pSD":0.00055,"pScaled":0.00129,"pRank":52,"nSamples":500,"individualID.1":19,"individualID.2":80,"transmission":false,"snpDist":11,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":2242,"infectionDiff":3004,"infectionDiffY":8.23014,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"019_081","label":"SNPs","pAvg":0.00188,"pSD":0.00059,"pScaled":0.00047,"pRank":80,"nSamples":50,"individualID.1":19,"individualID.2":81,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":2958,"infectionDiff":4171,"infectionDiffY":11.4274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"019_082","label":"SNPs","pAvg":0.00754,"pSD":0.00214,"pScaled":0.00164,"pRank":43,"nSamples":50,"individualID.1":19,"individualID.2":82,"transmission":false,"snpDist":8,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":2962,"infectionDiff":4248,"infectionDiffY":11.63836,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_083","label":"SNPs","pAvg":0.01522,"pSD":0.00362,"pScaled":0.00592,"pRank":20,"nSamples":50,"individualID.1":19,"individualID.2":83,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":2738,"infectionDiff":3718,"infectionDiffY":10.1863,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"019_084","label":"SNPs","pAvg":0.00473,"pSD":0.00099,"pScaled":0.00239,"pRank":15,"nSamples":50,"individualID.1":19,"individualID.2":84,"transmission":false,"snpDist":7,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":2981,"infectionDiff":3766,"infectionDiffY":10.31781,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_085","label":"SNPs","pAvg":0.00526,"pSD":0.00126,"pScaled":0.0018,"pRank":11,"nSamples":50,"individualID.1":19,"individualID.2":85,"transmission":false,"snpDist":5,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":2093,"infectionDiff":3431,"infectionDiffY":9.4,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_086","label":"SNPs","pAvg":0.0017,"pSD":0.00047,"pScaled":0.00054,"pRank":38,"nSamples":50,"individualID.1":19,"individualID.2":86,"transmission":false,"snpDist":8,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":1931,"infectionDiff":3059,"infectionDiffY":8.38082,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"019_087","label":"SNPs","pAvg":0.0002,"pSD":0.00063,"pScaled":0.00016,"pRank":68,"nSamples":500,"individualID.1":19,"individualID.2":87,"transmission":false,"snpDist":12,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":2466,"infectionDiff":3599,"infectionDiffY":9.86027,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"019_088","label":"SNPs","pAvg":0.01659,"pSD":0.00386,"pScaled":0.00321,"pRank":21,"nSamples":50,"individualID.1":19,"individualID.2":88,"transmission":false,"snpDist":7,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":2575,"infectionDiff":3933,"infectionDiffY":10.77534,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"019_089","label":"SNPs","pAvg":0.00551,"pSD":0.00139,"pScaled":0.00177,"pRank":13,"nSamples":50,"individualID.1":19,"individualID.2":89,"transmission":false,"snpDist":6,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":2867,"infectionDiff":3770,"infectionDiffY":10.32877,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_090","label":"SNPs","pAvg":0.00535,"pSD":0.00124,"pScaled":0.00139,"pRank":23,"nSamples":50,"individualID.1":19,"individualID.2":90,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":2937,"infectionDiff":3996,"infectionDiffY":10.94795,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_091","label":"SNPs","pAvg":0.00921,"pSD":0.00242,"pScaled":0.00462,"pRank":11,"nSamples":50,"individualID.1":19,"individualID.2":91,"transmission":false,"snpDist":6,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":2959,"infectionDiff":3587,"infectionDiffY":9.8274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_092","label":"SNPs","pAvg":0.00455,"pSD":0.0011,"pScaled":0.00185,"pRank":15,"nSamples":50,"individualID.1":19,"individualID.2":92,"transmission":false,"snpDist":6,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":3006,"infectionDiff":3738,"infectionDiffY":10.2411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_093","label":"SNPs","pAvg":0.00587,"pSD":0.00163,"pScaled":0.00159,"pRank":18,"nSamples":50,"individualID.1":19,"individualID.2":93,"transmission":false,"snpDist":7,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":2843,"infectionDiff":3964,"infectionDiffY":10.86027,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"019_094","label":"SNPs","pAvg":0.00179,"pSD":0.0005,"pScaled":0.00059,"pRank":60,"nSamples":50,"individualID.1":19,"individualID.2":94,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":2889,"infectionDiff":4236,"infectionDiffY":11.60548,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"019_095","label":"SNPs","pAvg":0.0002,"pSD":0.00062,"pScaled":0.0001,"pRank":69,"nSamples":500,"individualID.1":19,"individualID.2":95,"transmission":false,"snpDist":12,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":2471,"infectionDiff":3668,"infectionDiffY":10.04932,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"019_096","label":"SNPs","pAvg":0.00178,"pSD":0.00045,"pScaled":0.00063,"pRank":51,"nSamples":50,"individualID.1":19,"individualID.2":96,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":2566,"infectionDiff":3899,"infectionDiffY":10.68219,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"019_097","label":"SNPs","pAvg":0.00953,"pSD":0.00252,"pScaled":0.00214,"pRank":23,"nSamples":50,"individualID.1":19,"individualID.2":97,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":2809,"infectionDiff":4056,"infectionDiffY":11.11233,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"019_098","label":"SNPs","pAvg":0.00526,"pSD":0.0014,"pScaled":0.00149,"pRank":16,"nSamples":50,"individualID.1":19,"individualID.2":98,"transmission":false,"snpDist":6,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":2627,"infectionDiff":3829,"infectionDiffY":10.49041,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"019_099","label":"SNPs","pAvg":0.00154,"pSD":0.0005,"pScaled":0.00052,"pRank":49,"nSamples":50,"individualID.1":19,"individualID.2":99,"transmission":false,"snpDist":9,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":2610,"infectionDiff":3693,"infectionDiffY":10.11781,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"019_100","label":"SNPs","pAvg":0.00467,"pSD":0.00098,"pScaled":0.00138,"pRank":63,"nSamples":50,"individualID.1":19,"individualID.2":100,"transmission":false,"infectionDate.1":"1987-12-12 09:17:01","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1991-09-26 03:18:54","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":2810,"infectionDiff":4070,"infectionDiffY":11.15068,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"020_003","label":"SNPs","pAvg":0.03974,"pSD":0.01212,"pScaled":0.12539,"pRank":2,"nSamples":500,"individualID.1":20,"individualID.2":3,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1990-12-11 19:24:08","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1998-10-30 22:42:57","sampleDiff":1538,"infectionDiff":1352,"infectionDiffY":3.70411,"timeCat":"4","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"020_006","label":"SNPs","pAvg":0.01231,"pSD":0.00371,"pScaled":0.00786,"pRank":17,"nSamples":50,"individualID.1":20,"individualID.2":6,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":-746,"infectionDiff":1910,"infectionDiffY":5.23288,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"020_007","label":"SNPs","pAvg":0.69057,"pSD":0.45622,"pScaled":0.23248,"pRank":3,"nSamples":158,"individualID.1":20,"individualID.2":7,"transmission":false,"snpDist":1,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1987-07-15 05:58:16","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1988-02-23 12:34:50","sampleDiff":-2365,"infectionDiff":107,"infectionDiffY":0.29315,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":true} {"pairID":"020_009","label":"SNPs","pAvg":0.00751,"pSD":0.00211,"pScaled":0.03346,"pRank":10,"nSamples":500,"individualID.1":20,"individualID.2":9,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":1777,"infectionDiff":2593,"infectionDiffY":7.10411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"020_010","label":"SNPs","pAvg":0.00382,"pSD":0.00187,"pScaled":0.00276,"pRank":22,"nSamples":50,"individualID.1":20,"individualID.2":10,"transmission":false,"snpDist":3,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":-772,"infectionDiff":1634,"infectionDiffY":4.47671,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"020_011","label":"SNPs","pAvg":0.03975,"pSD":0.01304,"pScaled":0.01588,"pRank":6,"nSamples":50,"individualID.1":20,"individualID.2":11,"transmission":false,"snpDist":3,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1988-04-18 02:31:21","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1991-10-25 12:28:14","sampleDiff":-1025,"infectionDiff":384,"infectionDiffY":1.05205,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"020_012","label":"SNPs","pAvg":0.48401,"pSD":0.49213,"pScaled":0.12132,"pRank":5,"nSamples":95,"individualID.1":20,"individualID.2":12,"transmission":false,"snpDist":2,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1988-04-12 22:57:51","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1988-09-04 19:08:48","sampleDiff":-2171,"infectionDiff":379,"infectionDiffY":1.03836,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":true} {"pairID":"020_014","label":"SNPs","pAvg":0.00686,"pSD":0.0021,"pScaled":0.00377,"pRank":29,"nSamples":50,"individualID.1":20,"individualID.2":14,"transmission":false,"snpDist":3,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":-192,"infectionDiff":2171,"infectionDiffY":5.94795,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"020_015","label":"SNPs","pAvg":0.03465,"pSD":0.01084,"pScaled":0.01358,"pRank":8,"nSamples":50,"individualID.1":20,"individualID.2":15,"transmission":false,"snpDist":3,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1988-08-20 08:24:18","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1992-08-15 08:05:31","sampleDiff":-730,"infectionDiff":509,"infectionDiffY":1.39452,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"020_016","label":"SNPs","pAvg":0.02462,"pSD":0.00606,"pScaled":0.06136,"pRank":9,"nSamples":500,"individualID.1":20,"individualID.2":16,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1989-04-18 04:17:39","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1995-12-16 04:24:53","sampleDiff":488,"infectionDiff":749,"infectionDiffY":2.05205,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"020_017","label":"SNPs","pAvg":0.01121,"pSD":0.00247,"pScaled":0.01562,"pRank":14,"nSamples":500,"individualID.1":20,"individualID.2":17,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":946,"infectionDiff":1942,"infectionDiffY":5.32055,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"020_018","label":"SNPs","pAvg":0.00445,"pSD":0.00123,"pScaled":0.00504,"pRank":34,"nSamples":500,"individualID.1":20,"individualID.2":18,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":-299,"infectionDiff":2367,"infectionDiffY":6.48493,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"020_019","label":"SNPs","pAvg":0.02433,"pSD":0.00644,"pScaled":0.0221,"pRank":4,"nSamples":50,"individualID.1":20,"individualID.2":19,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1987-12-12 09:17:01","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1991-09-26 03:18:54","sampleDiff":-1054,"infectionDiff":257,"infectionDiffY":0.70411,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"020_021","label":"SNPs","pAvg":0.00751,"pSD":0.0022,"pScaled":0.00717,"pRank":31,"nSamples":500,"individualID.1":20,"individualID.2":21,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":1146,"infectionDiff":2364,"infectionDiffY":6.47671,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"020_022","label":"SNPs","pAvg":0.0431,"pSD":0.01329,"pScaled":0.08409,"pRank":3,"nSamples":500,"individualID.1":20,"individualID.2":22,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1989-06-06 04:07:23","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1991-10-22 14:29:51","sampleDiff":-1028,"infectionDiff":798,"infectionDiffY":2.1863,"timeCat":"3","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"020_023","label":"SNPs","pAvg":0.01195,"pSD":0.00278,"pScaled":0.00532,"pRank":30,"nSamples":50,"individualID.1":20,"individualID.2":23,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1934,"infectionDiff":4132,"infectionDiffY":11.32055,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"020_024","label":"SNPs","pAvg":0.02665,"pSD":0.00795,"pScaled":0.0206,"pRank":8,"nSamples":50,"individualID.1":20,"individualID.2":24,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1991-02-07 21:59:42","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1992-10-05 23:05:30","sampleDiff":-678,"infectionDiff":1410,"infectionDiffY":3.86301,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"020_025","label":"SNPs","pAvg":0.48501,"pSD":0.49119,"pScaled":0.11005,"pRank":5,"nSamples":95,"individualID.1":20,"individualID.2":25,"transmission":true,"snpDist":2,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1989-07-09 14:49:21","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1990-01-24 23:05:50","sampleDiff":-1663,"infectionDiff":832,"infectionDiffY":2.27945,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":true} {"pairID":"020_026","label":"SNPs","pAvg":0.01312,"pSD":0.00432,"pScaled":0.00461,"pRank":19,"nSamples":50,"individualID.1":20,"individualID.2":26,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1538,"infectionDiff":3429,"infectionDiffY":9.39452,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"020_027","label":"SNPs","pAvg":0.00765,"pSD":0.00234,"pScaled":0.00273,"pRank":56,"nSamples":50,"individualID.1":20,"individualID.2":27,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1711,"infectionDiff":4018,"infectionDiffY":11.00822,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"020_028","label":"SNPs","pAvg":0.01398,"pSD":0.0034,"pScaled":0.00391,"pRank":32,"nSamples":50,"individualID.1":20,"individualID.2":28,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":928,"infectionDiff":2843,"infectionDiffY":7.78904,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"020_029","label":"SNPs","pAvg":0.0184,"pSD":0.00603,"pScaled":0.04542,"pRank":10,"nSamples":500,"individualID.1":20,"individualID.2":29,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1990-12-27 23:28:20","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1992-03-01 23:20:54","sampleDiff":-896,"infectionDiff":1368,"infectionDiffY":3.74795,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"020_030","label":"SNPs","pAvg":0.01311,"pSD":0.00416,"pScaled":0.00917,"pRank":16,"nSamples":50,"individualID.1":20,"individualID.2":30,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":-821,"infectionDiff":1849,"infectionDiffY":5.06575,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"020_031","label":"SNPs","pAvg":0.02734,"pSD":0.00768,"pScaled":0.0451,"pRank":8,"nSamples":500,"individualID.1":20,"individualID.2":31,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1991-01-03 16:49:07","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1991-07-17 03:37:35","sampleDiff":-1125,"infectionDiff":1375,"infectionDiffY":3.76712,"timeCat":"4","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"020_032","label":"SNPs","pAvg":0.00532,"pSD":0.00239,"pScaled":0.00363,"pRank":22,"nSamples":50,"individualID.1":20,"individualID.2":32,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":609,"infectionDiff":1795,"infectionDiffY":4.91781,"timeCat":"5","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"020_033","label":"SNPs","pAvg":0.00729,"pSD":0.00222,"pScaled":0.00332,"pRank":25,"nSamples":50,"individualID.1":20,"individualID.2":33,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":1155,"infectionDiff":3700,"infectionDiffY":10.13699,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"020_034","label":"SNPs","pAvg":0.00664,"pSD":0.00235,"pScaled":0.02231,"pRank":10,"nSamples":500,"individualID.1":20,"individualID.2":34,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":178,"infectionDiff":1414,"infectionDiffY":3.87397,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"020_035","label":"SNPs","pAvg":0.00432,"pSD":0.00102,"pScaled":0.00112,"pRank":41,"nSamples":50,"individualID.1":20,"individualID.2":35,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":1118,"infectionDiff":2497,"infectionDiffY":6.8411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"020_036","label":"SNPs","pAvg":0.01132,"pSD":0.00234,"pScaled":0.00306,"pRank":40,"nSamples":50,"individualID.1":20,"individualID.2":36,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":917,"infectionDiff":3308,"infectionDiffY":9.06301,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"020_037","label":"SNPs","pAvg":0.0218,"pSD":0.00547,"pScaled":0.02198,"pRank":17,"nSamples":500,"individualID.1":20,"individualID.2":37,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":1304,"infectionDiff":2830,"infectionDiffY":7.75342,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"020_038","label":"SNPs","pAvg":0.01268,"pSD":0.00389,"pScaled":0.01506,"pRank":19,"nSamples":500,"individualID.1":20,"individualID.2":38,"transmission":false,"snpDist":9,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":366,"infectionDiff":2475,"infectionDiffY":6.78082,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"020_039","label":"SNPs","pAvg":0.01268,"pSD":0.00389,"pScaled":0.02736,"pRank":11,"nSamples":500,"individualID.1":20,"individualID.2":39,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":531,"infectionDiff":1921,"infectionDiffY":5.26301,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"020_040","label":"SNPs","pAvg":0.00867,"pSD":0.00249,"pScaled":0.00776,"pRank":38,"nSamples":500,"individualID.1":20,"individualID.2":40,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":939,"infectionDiff":3564,"infectionDiffY":9.76438,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"020_041","label":"SNPs","pAvg":0.01407,"pSD":0.00655,"pScaled":0.03652,"pRank":11,"nSamples":500,"individualID.1":20,"individualID.2":41,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":1789,"infectionDiff":1764,"infectionDiffY":4.83288,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"020_042","label":"SNPs","pAvg":0.01765,"pSD":0.0064,"pScaled":0.00651,"pRank":13,"nSamples":50,"individualID.1":20,"individualID.2":42,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":-808,"infectionDiff":1416,"infectionDiffY":3.87945,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"020_043","label":"SNPs","pAvg":0.00673,"pSD":0.00171,"pScaled":0.00908,"pRank":24,"nSamples":500,"individualID.1":20,"individualID.2":43,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":1914,"infectionDiff":2183,"infectionDiffY":5.98082,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"020_044","label":"SNPs","pAvg":0.0067,"pSD":0.00176,"pScaled":0.0018,"pRank":22,"nSamples":50,"individualID.1":20,"individualID.2":44,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":-466,"infectionDiff":2084,"infectionDiffY":5.70959,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"020_045","label":"SNPs","pAvg":0.01171,"pSD":0.00382,"pScaled":0.00708,"pRank":22,"nSamples":50,"individualID.1":20,"individualID.2":45,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":1313,"infectionDiff":3075,"infectionDiffY":8.42466,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"020_046","label":"SNPs","pAvg":0.02206,"pSD":0.00485,"pScaled":0.01276,"pRank":12,"nSamples":50,"individualID.1":20,"individualID.2":46,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":218,"infectionDiff":2029,"infectionDiffY":5.5589,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"020_047","label":"SNPs","pAvg":0.00563,"pSD":0.00145,"pScaled":0.00121,"pRank":41,"nSamples":50,"individualID.1":20,"individualID.2":47,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":164,"infectionDiff":2761,"infectionDiffY":7.56438,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"020_048","label":"SNPs","pAvg":0.0097,"pSD":0.00312,"pScaled":0.00428,"pRank":22,"nSamples":50,"individualID.1":20,"individualID.2":48,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":447,"infectionDiff":2295,"infectionDiffY":6.28767,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"020_049","label":"SNPs","pAvg":0.00842,"pSD":0.00251,"pScaled":0.00551,"pRank":18,"nSamples":50,"individualID.1":20,"individualID.2":49,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":182,"infectionDiff":1913,"infectionDiffY":5.2411,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"020_050","label":"SNPs","pAvg":0.00135,"pSD":0.0007,"pScaled":0.00589,"pRank":19,"nSamples":500,"individualID.1":20,"individualID.2":50,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":36,"infectionDiff":1585,"infectionDiffY":4.34247,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"020_051","label":"SNPs","pAvg":0.00702,"pSD":0.00197,"pScaled":0.00333,"pRank":40,"nSamples":50,"individualID.1":20,"individualID.2":51,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-49,"infectionDiff":2552,"infectionDiffY":6.99178,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"020_052","label":"SNPs","pAvg":0.01307,"pSD":0.0042,"pScaled":0.0049,"pRank":27,"nSamples":50,"individualID.1":20,"individualID.2":52,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1783,"infectionDiff":3580,"infectionDiffY":9.80822,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"020_053","label":"SNPs","pAvg":0.01398,"pSD":0.00454,"pScaled":0.00933,"pRank":13,"nSamples":50,"individualID.1":20,"individualID.2":53,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":471,"infectionDiff":3044,"infectionDiffY":8.33973,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"020_054","label":"SNPs","pAvg":0.00773,"pSD":0.0021,"pScaled":0.00201,"pRank":27,"nSamples":50,"individualID.1":20,"individualID.2":54,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1642,"infectionDiff":3969,"infectionDiffY":10.87397,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"020_055","label":"SNPs","pAvg":0.00432,"pSD":0.00121,"pScaled":0.00133,"pRank":41,"nSamples":50,"individualID.1":20,"individualID.2":55,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":625,"infectionDiff":3236,"infectionDiffY":8.86575,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"020_056","label":"SNPs","pAvg":0.01335,"pSD":0.00429,"pScaled":0.00319,"pRank":20,"nSamples":50,"individualID.1":20,"individualID.2":56,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":1049,"infectionDiff":3321,"infectionDiffY":9.09863,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"020_057","label":"SNPs","pAvg":0.01293,"pSD":0.00382,"pScaled":0.00258,"pRank":23,"nSamples":50,"individualID.1":20,"individualID.2":57,"transmission":false,"snpDist":9,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1612,"infectionDiff":3971,"infectionDiffY":10.87945,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"020_058","label":"SNPs","pAvg":0.01268,"pSD":0.00389,"pScaled":0.01252,"pRank":24,"nSamples":500,"individualID.1":20,"individualID.2":58,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1897,"infectionDiff":3659,"infectionDiffY":10.02466,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"020_059","label":"SNPs","pAvg":0.00583,"pSD":0.00148,"pScaled":0.00838,"pRank":24,"nSamples":500,"individualID.1":20,"individualID.2":59,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":1277,"infectionDiff":2123,"infectionDiffY":5.81644,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"020_060","label":"SNPs","pAvg":0.00899,"pSD":0.00229,"pScaled":0.00436,"pRank":38,"nSamples":50,"individualID.1":20,"individualID.2":60,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1938,"infectionDiff":4301,"infectionDiffY":11.78356,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"020_061","label":"SNPs","pAvg":0.00386,"pSD":0.00113,"pScaled":0.00734,"pRank":31,"nSamples":500,"individualID.1":20,"individualID.2":61,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1731,"infectionDiff":3519,"infectionDiffY":9.6411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"020_062","label":"SNPs","pAvg":0.00546,"pSD":0.00137,"pScaled":0.00145,"pRank":35,"nSamples":50,"individualID.1":20,"individualID.2":62,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":466,"infectionDiff":2424,"infectionDiffY":6.6411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"020_063","label":"SNPs","pAvg":0.00263,"pSD":0.00087,"pScaled":0.00127,"pRank":27,"nSamples":50,"individualID.1":20,"individualID.2":63,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":-102,"infectionDiff":2218,"infectionDiffY":6.07671,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"020_064","label":"SNPs","pAvg":0.01151,"pSD":0.00323,"pScaled":0.00437,"pRank":13,"nSamples":50,"individualID.1":20,"individualID.2":64,"transmission":false,"snpDist":9,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":681,"infectionDiff":3200,"infectionDiffY":8.76712,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"020_065","label":"SNPs","pAvg":0.00744,"pSD":0.00218,"pScaled":0.00574,"pRank":19,"nSamples":50,"individualID.1":20,"individualID.2":65,"transmission":false,"snpDist":8,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":689,"infectionDiff":3133,"infectionDiffY":8.58356,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"020_066","label":"SNPs","pAvg":0.01313,"pSD":0.00312,"pScaled":0.00347,"pRank":19,"nSamples":50,"individualID.1":20,"individualID.2":66,"transmission":false,"snpDist":9,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":836,"infectionDiff":3280,"infectionDiffY":8.9863,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"020_067","label":"SNPs","pAvg":0.01352,"pSD":0.00401,"pScaled":0.00341,"pRank":37,"nSamples":50,"individualID.1":20,"individualID.2":67,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1958,"infectionDiff":4365,"infectionDiffY":11.9589,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"020_068","label":"SNPs","pAvg":0.0056,"pSD":0.00131,"pScaled":0.00122,"pRank":60,"nSamples":50,"individualID.1":20,"individualID.2":68,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":1564,"infectionDiff":4017,"infectionDiffY":11.00548,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"020_069","label":"SNPs","pAvg":0.00444,"pSD":0.00129,"pScaled":0.00142,"pRank":35,"nSamples":50,"individualID.1":20,"individualID.2":69,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1608,"infectionDiff":4044,"infectionDiffY":11.07945,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"020_070","label":"SNPs","pAvg":0.00755,"pSD":0.00247,"pScaled":0.00234,"pRank":31,"nSamples":50,"individualID.1":20,"individualID.2":70,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":145,"infectionDiff":2461,"infectionDiffY":6.74247,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"020_071","label":"SNPs","pAvg":0.00076,"pSD":0.00238,"pScaled":0.00077,"pRank":43,"nSamples":500,"individualID.1":20,"individualID.2":71,"transmission":false,"snpDist":11,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":1664,"infectionDiff":2720,"infectionDiffY":7.45205,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"020_072","label":"SNPs","pAvg":0.0016,"pSD":0.00051,"pScaled":0.00049,"pRank":40,"nSamples":50,"individualID.1":20,"individualID.2":72,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":105,"infectionDiff":2639,"infectionDiffY":7.23014,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"020_073","label":"SNPs","pAvg":0.00418,"pSD":0.00124,"pScaled":0.00308,"pRank":20,"nSamples":50,"individualID.1":20,"individualID.2":73,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":1186,"infectionDiff":3390,"infectionDiffY":9.28767,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"020_074","label":"SNPs","pAvg":0.0013,"pSD":0.0005,"pScaled":0.00071,"pRank":39,"nSamples":50,"individualID.1":20,"individualID.2":74,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":1026,"infectionDiff":2770,"infectionDiffY":7.58904,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"020_075","label":"SNPs","pAvg":0.00031,"pSD":0.00099,"pScaled":0.00137,"pRank":62,"nSamples":500,"individualID.1":20,"individualID.2":75,"transmission":false,"snpDist":12,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1692,"infectionDiff":4344,"infectionDiffY":11.90137,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"020_076","label":"SNPs","pAvg":0.0072,"pSD":0.00204,"pScaled":0.00176,"pRank":53,"nSamples":50,"individualID.1":20,"individualID.2":76,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1927,"infectionDiff":4017,"infectionDiffY":11.00548,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"020_077","label":"SNPs","pAvg":0.00617,"pSD":0.00198,"pScaled":0.00136,"pRank":47,"nSamples":50,"individualID.1":20,"individualID.2":77,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":1080,"infectionDiff":3732,"infectionDiffY":10.22466,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"020_078","label":"SNPs","pAvg":0.00886,"pSD":0.00243,"pScaled":0.00196,"pRank":46,"nSamples":50,"individualID.1":20,"individualID.2":78,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1770,"infectionDiff":4045,"infectionDiffY":11.08219,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"020_079","label":"SNPs","pAvg":0.00147,"pSD":0.00048,"pScaled":0.00074,"pRank":50,"nSamples":50,"individualID.1":20,"individualID.2":79,"transmission":false,"snpDist":9,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":1179,"infectionDiff":3329,"infectionDiffY":9.12055,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"020_080","label":"SNPs","pAvg":0.0021,"pSD":0.00066,"pScaled":0.01534,"pRank":11,"nSamples":500,"individualID.1":20,"individualID.2":80,"transmission":false,"snpDist":9,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":1188,"infectionDiff":3261,"infectionDiffY":8.93425,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"020_081","label":"SNPs","pAvg":0.00474,"pSD":0.00141,"pScaled":0.00118,"pRank":38,"nSamples":50,"individualID.1":20,"individualID.2":81,"transmission":false,"snpDist":4,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1904,"infectionDiff":4428,"infectionDiffY":12.13151,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"020_082","label":"SNPs","pAvg":0.00374,"pSD":0.00112,"pScaled":0.00082,"pRank":80,"nSamples":50,"individualID.1":20,"individualID.2":82,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1908,"infectionDiff":4505,"infectionDiffY":12.34247,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"020_083","label":"SNPs","pAvg":0.00598,"pSD":0.0014,"pScaled":0.00233,"pRank":53,"nSamples":50,"individualID.1":20,"individualID.2":83,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1684,"infectionDiff":3975,"infectionDiffY":10.89041,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"020_084","label":"SNPs","pAvg":0.00015,"pSD":0.00047,"pScaled":0.00007,"pRank":81,"nSamples":500,"individualID.1":20,"individualID.2":84,"transmission":false,"snpDist":11,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1927,"infectionDiff":4023,"infectionDiffY":11.02192,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"020_085","label":"SNPs","pAvg":0.00166,"pSD":0.00047,"pScaled":0.00057,"pRank":31,"nSamples":50,"individualID.1":20,"individualID.2":85,"transmission":false,"snpDist":9,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":1039,"infectionDiff":3688,"infectionDiffY":10.10411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"020_086","label":"SNPs","pAvg":0.00446,"pSD":0.00119,"pScaled":0.00142,"pRank":27,"nSamples":50,"individualID.1":20,"individualID.2":86,"transmission":false,"snpDist":6,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":877,"infectionDiff":3316,"infectionDiffY":9.08493,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"020_087","label":"SNPs","pAvg":0.00589,"pSD":0.00147,"pScaled":0.00481,"pRank":14,"nSamples":50,"individualID.1":20,"individualID.2":87,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":1411,"infectionDiff":3855,"infectionDiffY":10.56164,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"020_088","label":"SNPs","pAvg":0.00436,"pSD":0.00134,"pScaled":0.00084,"pRank":72,"nSamples":50,"individualID.1":20,"individualID.2":88,"transmission":false,"snpDist":5,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":1521,"infectionDiff":4190,"infectionDiffY":11.47945,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"020_089","label":"SNPs","pAvg":0.00178,"pSD":0.00055,"pScaled":0.00057,"pRank":31,"nSamples":50,"individualID.1":20,"individualID.2":89,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1813,"infectionDiff":4026,"infectionDiffY":11.03014,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"020_090","label":"SNPs","pAvg":0.00017,"pSD":0.00053,"pScaled":0.00004,"pRank":89,"nSamples":500,"individualID.1":20,"individualID.2":90,"transmission":false,"snpDist":11,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1883,"infectionDiff":4253,"infectionDiffY":11.65205,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"020_091","label":"SNPs","pAvg":0.00466,"pSD":0.00117,"pScaled":0.00234,"pRank":21,"nSamples":50,"individualID.1":20,"individualID.2":91,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1904,"infectionDiff":3844,"infectionDiffY":10.53151,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"020_092","label":"SNPs","pAvg":0.00146,"pSD":0.00051,"pScaled":0.00059,"pRank":37,"nSamples":50,"individualID.1":20,"individualID.2":92,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1951,"infectionDiff":3995,"infectionDiffY":10.94521,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"020_093","label":"SNPs","pAvg":0.00027,"pSD":0.00086,"pScaled":0.00007,"pRank":79,"nSamples":500,"individualID.1":20,"individualID.2":93,"transmission":false,"snpDist":11,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1788,"infectionDiff":4221,"infectionDiffY":11.56438,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"020_094","label":"SNPs","pAvg":0.00775,"pSD":0.00221,"pScaled":0.00255,"pRank":31,"nSamples":50,"individualID.1":20,"individualID.2":94,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1834,"infectionDiff":4492,"infectionDiffY":12.30685,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"020_095","label":"SNPs","pAvg":0.00586,"pSD":0.00169,"pScaled":0.00298,"pRank":15,"nSamples":50,"individualID.1":20,"individualID.2":95,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":1417,"infectionDiff":3924,"infectionDiffY":10.75068,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"020_096","label":"SNPs","pAvg":0.00386,"pSD":0.00113,"pScaled":0.00135,"pRank":35,"nSamples":50,"individualID.1":20,"individualID.2":96,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":1512,"infectionDiff":4156,"infectionDiffY":11.3863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"020_097","label":"SNPs","pAvg":0.0046,"pSD":0.00119,"pScaled":0.00103,"pRank":54,"nSamples":50,"individualID.1":20,"individualID.2":97,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1754,"infectionDiff":4312,"infectionDiffY":11.8137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"020_098","label":"SNPs","pAvg":0.0034,"pSD":0.00101,"pScaled":0.00097,"pRank":28,"nSamples":50,"individualID.1":20,"individualID.2":98,"transmission":false,"snpDist":10,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":1573,"infectionDiff":4085,"infectionDiffY":11.19178,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"020_099","label":"SNPs","pAvg":0.00763,"pSD":0.00212,"pScaled":0.00261,"pRank":27,"nSamples":50,"individualID.1":20,"individualID.2":99,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":1556,"infectionDiff":3949,"infectionDiffY":10.81918,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"020_100","label":"SNPs","pAvg":0.00682,"pSD":0.00218,"pScaled":0.00201,"pRank":54,"nSamples":50,"individualID.1":20,"individualID.2":100,"transmission":false,"snpDist":7,"infectionDate.1":"1987-03-30 17:23:41","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1994-08-15 09:04:39","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1755,"infectionDiff":4327,"infectionDiffY":11.85479,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"021_009","label":"SNPs","pAvg":0.00263,"pSD":0.00804,"pScaled":0.01171,"pRank":26,"nSamples":500,"individualID.1":21,"individualID.2":9,"transmission":false,"snpDist":12,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":632,"infectionDiff":229,"infectionDiffY":0.6274,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"021_018","label":"SNPs","pAvg":0.04453,"pSD":0.00951,"pScaled":0.05047,"pRank":5,"nSamples":500,"individualID.1":21,"individualID.2":18,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":-1445,"infectionDiff":3,"infectionDiffY":0.00822,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"021_023","label":"SNPs","pAvg":0.01543,"pSD":0.00692,"pScaled":0.00687,"pRank":26,"nSamples":50,"individualID.1":21,"individualID.2":23,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":789,"infectionDiff":1768,"infectionDiffY":4.84384,"timeCat":"5","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"021_026","label":"SNPs","pAvg":0.7897,"pSD":0.39992,"pScaled":0.2774,"pRank":1,"nSamples":230,"individualID.1":21,"individualID.2":26,"transmission":true,"snpDist":1,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":393,"infectionDiff":1065,"infectionDiffY":2.91781,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"021_027","label":"SNPs","pAvg":0.01687,"pSD":0.00745,"pScaled":0.00602,"pRank":21,"nSamples":50,"individualID.1":21,"individualID.2":27,"transmission":true,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":565,"infectionDiff":1654,"infectionDiffY":4.53151,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"021_028","label":"SNPs","pAvg":0.78855,"pSD":0.39197,"pScaled":0.22026,"pRank":1,"nSamples":221,"individualID.1":21,"individualID.2":28,"transmission":true,"snpDist":2,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":-218,"infectionDiff":478,"infectionDiffY":1.30959,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"1","snpClose":true} {"pairID":"021_033","label":"SNPs","pAvg":0.01009,"pSD":0.00325,"pScaled":0.0046,"pRank":17,"nSamples":50,"individualID.1":21,"individualID.2":33,"transmission":false,"snpDist":9,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":10,"infectionDiff":1336,"infectionDiffY":3.66027,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"021_035","label":"SNPs","pAvg":0.04532,"pSD":0.00922,"pScaled":0.01178,"pRank":12,"nSamples":50,"individualID.1":21,"individualID.2":35,"transmission":false,"snpDist":6,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":-28,"infectionDiff":133,"infectionDiffY":0.36438,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"021_036","label":"SNPs","pAvg":0.05718,"pSD":0.01502,"pScaled":0.01547,"pRank":7,"nSamples":50,"individualID.1":21,"individualID.2":36,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":-229,"infectionDiff":944,"infectionDiffY":2.5863,"timeCat":"3","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"021_037","label":"SNPs","pAvg":0.04242,"pSD":0.00977,"pScaled":0.04278,"pRank":8,"nSamples":500,"individualID.1":21,"individualID.2":37,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":158,"infectionDiff":466,"infectionDiffY":1.27671,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"021_038","label":"SNPs","pAvg":0.05833,"pSD":0.0121,"pScaled":0.06926,"pRank":5,"nSamples":500,"individualID.1":21,"individualID.2":38,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":-780,"infectionDiff":111,"infectionDiffY":0.30411,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"021_040","label":"SNPs","pAvg":0.03091,"pSD":0.00824,"pScaled":0.02765,"pRank":9,"nSamples":500,"individualID.1":21,"individualID.2":40,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":-206,"infectionDiff":1200,"infectionDiffY":3.28767,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"021_045","label":"SNPs","pAvg":0.02246,"pSD":0.00503,"pScaled":0.01359,"pRank":11,"nSamples":50,"individualID.1":21,"individualID.2":45,"transmission":false,"snpDist":10,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":167,"infectionDiff":710,"infectionDiffY":1.94521,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"021_047","label":"SNPs","pAvg":0.04298,"pSD":0.00996,"pScaled":0.00927,"pRank":15,"nSamples":50,"individualID.1":21,"individualID.2":47,"transmission":false,"snpDist":8,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":-982,"infectionDiff":396,"infectionDiffY":1.08493,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"021_051","label":"SNPs","pAvg":0.04632,"pSD":0.01024,"pScaled":0.02194,"pRank":10,"nSamples":50,"individualID.1":21,"individualID.2":51,"transmission":false,"snpDist":7,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-1195,"infectionDiff":188,"infectionDiffY":0.51507,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"021_052","label":"SNPs","pAvg":0.02174,"pSD":0.00591,"pScaled":0.00816,"pRank":16,"nSamples":50,"individualID.1":21,"individualID.2":52,"transmission":false,"snpDist":8,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":638,"infectionDiff":1216,"infectionDiffY":3.33151,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"021_053","label":"SNPs","pAvg":0.04268,"pSD":0.00859,"pScaled":0.0285,"pRank":4,"nSamples":50,"individualID.1":21,"individualID.2":53,"transmission":false,"snpDist":10,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":-675,"infectionDiff":680,"infectionDiffY":1.86301,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"021_054","label":"SNPs","pAvg":0.00448,"pSD":0.00188,"pScaled":0.00117,"pRank":52,"nSamples":50,"individualID.1":21,"individualID.2":54,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":496,"infectionDiff":1604,"infectionDiffY":4.39452,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"021_055","label":"SNPs","pAvg":0.02657,"pSD":0.00846,"pScaled":0.00816,"pRank":9,"nSamples":50,"individualID.1":21,"individualID.2":55,"transmission":false,"snpDist":10,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":-521,"infectionDiff":872,"infectionDiffY":2.38904,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"021_056","label":"SNPs","pAvg":0.03395,"pSD":0.01133,"pScaled":0.00811,"pRank":10,"nSamples":50,"individualID.1":21,"individualID.2":56,"transmission":false,"snpDist":10,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":-97,"infectionDiff":956,"infectionDiffY":2.61918,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"021_057","label":"SNPs","pAvg":0.00101,"pSD":0.00333,"pScaled":0.0002,"pRank":58,"nSamples":500,"individualID.1":21,"individualID.2":57,"transmission":false,"snpDist":11,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":466,"infectionDiff":1606,"infectionDiffY":4.4,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"021_058","label":"SNPs","pAvg":0.02137,"pSD":0.00592,"pScaled":0.02109,"pRank":14,"nSamples":500,"individualID.1":21,"individualID.2":58,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":751,"infectionDiff":1295,"infectionDiffY":3.54795,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"021_060","label":"SNPs","pAvg":0.01495,"pSD":0.00342,"pScaled":0.00724,"pRank":23,"nSamples":50,"individualID.1":21,"individualID.2":60,"transmission":false,"snpDist":10,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":793,"infectionDiff":1937,"infectionDiffY":5.30685,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"021_061","label":"SNPs","pAvg":0.004,"pSD":0.00132,"pScaled":0.00759,"pRank":29,"nSamples":500,"individualID.1":21,"individualID.2":61,"transmission":false,"snpDist":9,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":586,"infectionDiff":1155,"infectionDiffY":3.16438,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"021_062","label":"SNPs","pAvg":0.05499,"pSD":0.01156,"pScaled":0.01456,"pRank":10,"nSamples":50,"individualID.1":21,"individualID.2":62,"transmission":false,"snpDist":8,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":-679,"infectionDiff":59,"infectionDiffY":0.16164,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"021_064","label":"SNPs","pAvg":0.00168,"pSD":0.00525,"pScaled":0.00064,"pRank":42,"nSamples":500,"individualID.1":21,"individualID.2":64,"transmission":false,"snpDist":11,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":-465,"infectionDiff":836,"infectionDiffY":2.29041,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"021_065","label":"SNPs","pAvg":0.01304,"pSD":0.00422,"pScaled":0.01006,"pRank":12,"nSamples":50,"individualID.1":21,"individualID.2":65,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":-457,"infectionDiff":769,"infectionDiffY":2.10685,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"021_066","label":"SNPs","pAvg":0.00536,"pSD":0.01667,"pScaled":0.00142,"pRank":32,"nSamples":500,"individualID.1":21,"individualID.2":66,"transmission":false,"snpDist":11,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":-310,"infectionDiff":916,"infectionDiffY":2.50959,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"1","snpClose":false} {"pairID":"021_067","label":"SNPs","pAvg":0.01022,"pSD":0.00222,"pScaled":0.00258,"pRank":40,"nSamples":50,"individualID.1":21,"individualID.2":67,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":812,"infectionDiff":2001,"infectionDiffY":5.48219,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"021_068","label":"SNPs","pAvg":0.00918,"pSD":0.00397,"pScaled":0.002,"pRank":40,"nSamples":50,"individualID.1":21,"individualID.2":68,"transmission":false,"snpDist":7,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":418,"infectionDiff":1653,"infectionDiffY":4.52877,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"021_069","label":"SNPs","pAvg":0.00153,"pSD":0.00071,"pScaled":0.00049,"pRank":65,"nSamples":50,"individualID.1":21,"individualID.2":69,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":463,"infectionDiff":1680,"infectionDiffY":4.60274,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"021_070","label":"SNPs","pAvg":0.09311,"pSD":0.01301,"pScaled":0.02883,"pRank":4,"nSamples":50,"individualID.1":21,"individualID.2":70,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":-1001,"infectionDiff":97,"infectionDiffY":0.26575,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"021_071","label":"SNPs","pAvg":0.09407,"pSD":0.01546,"pScaled":0.09571,"pRank":1,"nSamples":500,"individualID.1":21,"individualID.2":71,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":518,"infectionDiff":356,"infectionDiffY":0.97534,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"021_072","label":"SNPs","pAvg":0.02671,"pSD":0.00563,"pScaled":0.00813,"pRank":11,"nSamples":50,"individualID.1":21,"individualID.2":72,"transmission":false,"snpDist":9,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":-1041,"infectionDiff":275,"infectionDiffY":0.75342,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"021_073","label":"SNPs","pAvg":0.01069,"pSD":0.00402,"pScaled":0.00787,"pRank":14,"nSamples":50,"individualID.1":21,"individualID.2":73,"transmission":false,"snpDist":9,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":40,"infectionDiff":1026,"infectionDiffY":2.81096,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"021_074","label":"SNPs","pAvg":0.00814,"pSD":0.00215,"pScaled":0.00447,"pRank":9,"nSamples":50,"individualID.1":21,"individualID.2":74,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":-120,"infectionDiff":406,"infectionDiffY":1.11233,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"021_075","label":"SNPs","pAvg":0.00031,"pSD":0.00096,"pScaled":0.00134,"pRank":64,"nSamples":500,"individualID.1":21,"individualID.2":75,"transmission":false,"snpDist":13,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":546,"infectionDiff":1979,"infectionDiffY":5.42192,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"021_076","label":"SNPs","pAvg":0.00433,"pSD":0.00164,"pScaled":0.00106,"pRank":62,"nSamples":50,"individualID.1":21,"individualID.2":76,"transmission":false,"snpDist":7,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":781,"infectionDiff":1653,"infectionDiffY":4.52877,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"021_077","label":"SNPs","pAvg":0.01118,"pSD":0.00337,"pScaled":0.00247,"pRank":27,"nSamples":50,"individualID.1":21,"individualID.2":77,"transmission":false,"snpDist":6,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":-66,"infectionDiff":1368,"infectionDiffY":3.74795,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"021_078","label":"SNPs","pAvg":0.01333,"pSD":0.00541,"pScaled":0.00295,"pRank":36,"nSamples":50,"individualID.1":21,"individualID.2":78,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":625,"infectionDiff":1681,"infectionDiffY":4.60548,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"021_079","label":"SNPs","pAvg":0.01797,"pSD":0.00572,"pScaled":0.00903,"pRank":6,"nSamples":50,"individualID.1":21,"individualID.2":79,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":33,"infectionDiff":964,"infectionDiffY":2.6411,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"021_080","label":"SNPs","pAvg":0.0007,"pSD":0.00221,"pScaled":0.0051,"pRank":38,"nSamples":500,"individualID.1":21,"individualID.2":80,"transmission":false,"snpDist":11,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":42,"infectionDiff":897,"infectionDiffY":2.45753,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"021_081","label":"SNPs","pAvg":0.00329,"pSD":0.00116,"pScaled":0.00082,"pRank":58,"nSamples":50,"individualID.1":21,"individualID.2":81,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":758,"infectionDiff":2063,"infectionDiffY":5.65205,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"021_082","label":"SNPs","pAvg":0.00868,"pSD":0.00217,"pScaled":0.00189,"pRank":37,"nSamples":50,"individualID.1":21,"individualID.2":82,"transmission":false,"snpDist":8,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":762,"infectionDiff":2141,"infectionDiffY":5.86575,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"021_083","label":"SNPs","pAvg":0.00938,"pSD":0.00473,"pScaled":0.00365,"pRank":35,"nSamples":50,"individualID.1":21,"individualID.2":83,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":538,"infectionDiff":1610,"infectionDiffY":4.41096,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"021_084","label":"SNPs","pAvg":0.00051,"pSD":0.00165,"pScaled":0.00026,"pRank":57,"nSamples":500,"individualID.1":21,"individualID.2":84,"transmission":false,"snpDist":13,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":781,"infectionDiff":1658,"infectionDiffY":4.54247,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"021_085","label":"SNPs","pAvg":0.00092,"pSD":0.0029,"pScaled":0.00032,"pRank":48,"nSamples":500,"individualID.1":21,"individualID.2":85,"transmission":false,"snpDist":11,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":-107,"infectionDiff":1324,"infectionDiffY":3.6274,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"021_086","label":"SNPs","pAvg":0.00499,"pSD":0.00185,"pScaled":0.00159,"pRank":23,"nSamples":50,"individualID.1":21,"individualID.2":86,"transmission":false,"snpDist":8,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":-269,"infectionDiff":952,"infectionDiffY":2.60822,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"021_087","label":"SNPs","pAvg":0.00021,"pSD":0.00069,"pScaled":0.00017,"pRank":64,"nSamples":500,"individualID.1":21,"individualID.2":87,"transmission":false,"snpDist":12,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":266,"infectionDiff":1491,"infectionDiffY":4.08493,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"021_088","label":"SNPs","pAvg":0.00766,"pSD":0.00224,"pScaled":0.00148,"pRank":43,"nSamples":50,"individualID.1":21,"individualID.2":88,"transmission":false,"snpDist":7,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":375,"infectionDiff":1826,"infectionDiffY":5.00274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"021_089","label":"SNPs","pAvg":0.00045,"pSD":0.00148,"pScaled":0.00014,"pRank":71,"nSamples":500,"individualID.1":21,"individualID.2":89,"transmission":false,"snpDist":12,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":667,"infectionDiff":1662,"infectionDiffY":4.55342,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"021_090","label":"SNPs","pAvg":0.00471,"pSD":0.00093,"pScaled":0.00122,"pRank":28,"nSamples":50,"individualID.1":21,"individualID.2":90,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":738,"infectionDiff":1889,"infectionDiffY":5.17534,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"021_091","label":"SNPs","pAvg":0.00077,"pSD":0.00258,"pScaled":0.00038,"pRank":59,"nSamples":500,"individualID.1":21,"individualID.2":91,"transmission":false,"snpDist":12,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":759,"infectionDiff":1480,"infectionDiffY":4.05479,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"021_092","label":"SNPs","pAvg":0.00052,"pSD":0.00171,"pScaled":0.00021,"pRank":58,"nSamples":500,"individualID.1":21,"individualID.2":92,"transmission":false,"snpDist":12,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":806,"infectionDiff":1631,"infectionDiffY":4.46849,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"021_093","label":"SNPs","pAvg":0.00051,"pSD":0.00158,"pScaled":0.00014,"pRank":74,"nSamples":500,"individualID.1":21,"individualID.2":93,"transmission":false,"snpDist":13,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":643,"infectionDiff":1856,"infectionDiffY":5.08493,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"021_094","label":"SNPs","pAvg":0.00409,"pSD":0.00099,"pScaled":0.00135,"pRank":40,"nSamples":50,"individualID.1":21,"individualID.2":94,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":689,"infectionDiff":2128,"infectionDiffY":5.83014,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"021_095","label":"SNPs","pAvg":0.00021,"pSD":0.00073,"pScaled":0.00011,"pRank":64,"nSamples":500,"individualID.1":21,"individualID.2":95,"transmission":false,"snpDist":12,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":271,"infectionDiff":1560,"infectionDiffY":4.27397,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"021_096","label":"SNPs","pAvg":0.00195,"pSD":0.00086,"pScaled":0.00068,"pRank":49,"nSamples":50,"individualID.1":21,"individualID.2":96,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":366,"infectionDiff":1792,"infectionDiffY":4.90959,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"021_097","label":"SNPs","pAvg":0.00837,"pSD":0.00217,"pScaled":0.00188,"pRank":29,"nSamples":50,"individualID.1":21,"individualID.2":97,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":609,"infectionDiff":1948,"infectionDiffY":5.33699,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"021_098","label":"SNPs","pAvg":0.00087,"pSD":0.0028,"pScaled":0.00025,"pRank":62,"nSamples":500,"individualID.1":21,"individualID.2":98,"transmission":false,"snpDist":12,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":428,"infectionDiff":1721,"infectionDiffY":4.71507,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"021_099","label":"SNPs","pAvg":0.00352,"pSD":0.00152,"pScaled":0.0012,"pRank":35,"nSamples":50,"individualID.1":21,"individualID.2":99,"transmission":false,"snpDist":9,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":410,"infectionDiff":1585,"infectionDiffY":4.34247,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"021_100","label":"SNPs","pAvg":0.00547,"pSD":0.00121,"pScaled":0.00161,"pRank":58,"nSamples":50,"individualID.1":21,"individualID.2":100,"transmission":false,"infectionDate.1":"1993-09-19 00:23:37","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1997-10-03 23:38:50","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":610,"infectionDiff":1963,"infectionDiffY":5.37808,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"022_003","label":"SNPs","pAvg":0.05096,"pSD":0.01296,"pScaled":0.16079,"pRank":1,"nSamples":500,"individualID.1":22,"individualID.2":3,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1990-12-11 19:24:08","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1998-10-30 22:42:57","sampleDiff":2565,"infectionDiff":554,"infectionDiffY":1.51781,"timeCat":"2","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"022_006","label":"SNPs","pAvg":0.01805,"pSD":0.0062,"pScaled":0.01153,"pRank":13,"nSamples":50,"individualID.1":22,"individualID.2":6,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":281,"infectionDiff":1112,"infectionDiffY":3.04658,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"022_009","label":"SNPs","pAvg":0.00044,"pSD":0.00149,"pScaled":0.00198,"pRank":43,"nSamples":500,"individualID.1":22,"individualID.2":9,"transmission":false,"snpDist":12,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":2805,"infectionDiff":1794,"infectionDiffY":4.91507,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"022_010","label":"SNPs","pAvg":0.02195,"pSD":0.00571,"pScaled":0.0159,"pRank":12,"nSamples":50,"individualID.1":22,"individualID.2":10,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":256,"infectionDiff":835,"infectionDiffY":2.28767,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"022_014","label":"SNPs","pAvg":0.02825,"pSD":0.00908,"pScaled":0.01552,"pRank":16,"nSamples":50,"individualID.1":22,"individualID.2":14,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":836,"infectionDiff":1372,"infectionDiffY":3.7589,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"022_017","label":"SNPs","pAvg":0.03974,"pSD":0.01212,"pScaled":0.0554,"pRank":8,"nSamples":500,"individualID.1":22,"individualID.2":17,"transmission":false,"snpDist":8,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":1974,"infectionDiff":1144,"infectionDiffY":3.13425,"timeCat":"4","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"022_018","label":"SNPs","pAvg":0.00721,"pSD":0.00329,"pScaled":0.00818,"pRank":32,"nSamples":500,"individualID.1":22,"individualID.2":18,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":728,"infectionDiff":1569,"infectionDiffY":4.29863,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"022_021","label":"SNPs","pAvg":0.01229,"pSD":0.00597,"pScaled":0.01174,"pRank":24,"nSamples":500,"individualID.1":22,"individualID.2":21,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":2173,"infectionDiff":1566,"infectionDiffY":4.29041,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"022_023","label":"SNPs","pAvg":0.02005,"pSD":0.00515,"pScaled":0.00892,"pRank":18,"nSamples":50,"individualID.1":22,"individualID.2":23,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":2962,"infectionDiff":3334,"infectionDiffY":9.13425,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"022_024","label":"SNPs","pAvg":0.04063,"pSD":0.01347,"pScaled":0.0314,"pRank":4,"nSamples":50,"individualID.1":22,"individualID.2":24,"transmission":false,"snpDist":7,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1991-02-07 21:59:42","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1992-10-05 23:05:30","sampleDiff":349,"infectionDiff":612,"infectionDiffY":1.67671,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"022_025","label":"SNPs","pAvg":0.06565,"pSD":0.01472,"pScaled":0.0149,"pRank":9,"nSamples":50,"individualID.1":22,"individualID.2":25,"transmission":false,"snpDist":4,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1989-07-09 14:49:21","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1990-01-24 23:05:50","sampleDiff":-636,"infectionDiff":33,"infectionDiffY":0.09041,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"022_026","label":"SNPs","pAvg":0.00755,"pSD":0.00239,"pScaled":0.00265,"pRank":34,"nSamples":50,"individualID.1":22,"individualID.2":26,"transmission":false,"snpDist":7,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":2566,"infectionDiff":2630,"infectionDiffY":7.20548,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"022_027","label":"SNPs","pAvg":0.01299,"pSD":0.00393,"pScaled":0.00464,"pRank":31,"nSamples":50,"individualID.1":22,"individualID.2":27,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":2739,"infectionDiff":3220,"infectionDiffY":8.82192,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"022_028","label":"SNPs","pAvg":0.02316,"pSD":0.00568,"pScaled":0.00647,"pRank":27,"nSamples":50,"individualID.1":22,"individualID.2":28,"transmission":false,"snpDist":6,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":1955,"infectionDiff":2044,"infectionDiffY":5.6,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"022_029","label":"SNPs","pAvg":0.06455,"pSD":0.01768,"pScaled":0.15932,"pRank":1,"nSamples":500,"individualID.1":22,"individualID.2":29,"transmission":true,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1990-12-27 23:28:20","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1992-03-01 23:20:54","sampleDiff":131,"infectionDiff":570,"infectionDiffY":1.56164,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"022_030","label":"SNPs","pAvg":0.02516,"pSD":0.00714,"pScaled":0.01759,"pRank":9,"nSamples":50,"individualID.1":22,"individualID.2":30,"transmission":true,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":206,"infectionDiff":1051,"infectionDiffY":2.87945,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"022_031","label":"SNPs","pAvg":0.09496,"pSD":0.02511,"pScaled":0.15665,"pRank":2,"nSamples":500,"individualID.1":22,"individualID.2":31,"transmission":true,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1991-01-03 16:49:07","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1991-07-17 03:37:35","sampleDiff":-97,"infectionDiff":577,"infectionDiffY":1.58082,"timeCat":"2","Z1":"1","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"022_032","label":"SNPs","pAvg":0.03339,"pSD":0.01288,"pScaled":0.02277,"pRank":7,"nSamples":50,"individualID.1":22,"individualID.2":32,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":1636,"infectionDiff":997,"infectionDiffY":2.73151,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"022_033","label":"SNPs","pAvg":0.00432,"pSD":0.00125,"pScaled":0.00197,"pRank":44,"nSamples":50,"individualID.1":22,"individualID.2":33,"transmission":false,"snpDist":9,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":2183,"infectionDiff":2902,"infectionDiffY":7.95068,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"022_034","label":"SNPs","pAvg":0.03958,"pSD":0.01194,"pScaled":0.13301,"pRank":3,"nSamples":500,"individualID.1":22,"individualID.2":34,"transmission":false,"snpDist":6,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":1205,"infectionDiff":616,"infectionDiffY":1.68767,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"022_035","label":"SNPs","pAvg":0.70246,"pSD":0.45652,"pScaled":0.18264,"pRank":3,"nSamples":167,"individualID.1":22,"individualID.2":35,"transmission":false,"snpDist":2,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":2145,"infectionDiff":1699,"infectionDiffY":4.65479,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":true} {"pairID":"022_036","label":"SNPs","pAvg":0.01854,"pSD":0.00456,"pScaled":0.00501,"pRank":32,"nSamples":50,"individualID.1":22,"individualID.2":36,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":1945,"infectionDiff":2509,"infectionDiffY":6.87397,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"022_037","label":"SNPs","pAvg":0.01297,"pSD":0.00317,"pScaled":0.01308,"pRank":22,"nSamples":500,"individualID.1":22,"individualID.2":37,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":2332,"infectionDiff":2032,"infectionDiffY":5.56712,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"022_038","label":"SNPs","pAvg":0.00731,"pSD":0.00356,"pScaled":0.00868,"pRank":24,"nSamples":500,"individualID.1":22,"individualID.2":38,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":1394,"infectionDiff":1676,"infectionDiffY":4.59178,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"022_039","label":"SNPs","pAvg":0.01612,"pSD":0.00576,"pScaled":0.03477,"pRank":8,"nSamples":500,"individualID.1":22,"individualID.2":39,"transmission":false,"snpDist":6,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":1559,"infectionDiff":1122,"infectionDiffY":3.07397,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"022_040","label":"SNPs","pAvg":0.01454,"pSD":0.00414,"pScaled":0.01301,"pRank":24,"nSamples":500,"individualID.1":22,"individualID.2":40,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":1967,"infectionDiff":2765,"infectionDiffY":7.57534,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"022_041","label":"SNPs","pAvg":0.02861,"pSD":0.0082,"pScaled":0.07426,"pRank":4,"nSamples":500,"individualID.1":22,"individualID.2":41,"transmission":false,"snpDist":4,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":2817,"infectionDiff":966,"infectionDiffY":2.64658,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"022_042","label":"SNPs","pAvg":0.82341,"pSD":0.36781,"pScaled":0.30394,"pRank":1,"nSamples":266,"individualID.1":22,"individualID.2":42,"transmission":false,"snpDist":0,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":220,"infectionDiff":618,"infectionDiffY":1.69315,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":true} {"pairID":"022_043","label":"SNPs","pAvg":0.02398,"pSD":0.00766,"pScaled":0.03236,"pRank":12,"nSamples":500,"individualID.1":22,"individualID.2":43,"transmission":false,"snpDist":10,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":2942,"infectionDiff":1385,"infectionDiffY":3.79452,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"022_044","label":"SNPs","pAvg":0.02295,"pSD":0.00768,"pScaled":0.00617,"pRank":14,"nSamples":50,"individualID.1":22,"individualID.2":44,"transmission":false,"snpDist":7,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":562,"infectionDiff":1286,"infectionDiffY":3.52329,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"022_045","label":"SNPs","pAvg":0.00671,"pSD":0.00186,"pScaled":0.00406,"pRank":30,"nSamples":50,"individualID.1":22,"individualID.2":45,"transmission":false,"snpDist":10,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":2341,"infectionDiff":2276,"infectionDiffY":6.23562,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"022_046","label":"SNPs","pAvg":0.02876,"pSD":0.00834,"pScaled":0.01664,"pRank":11,"nSamples":50,"individualID.1":22,"individualID.2":46,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":1245,"infectionDiff":1231,"infectionDiffY":3.3726,"timeCat":"4","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"022_047","label":"SNPs","pAvg":0.0098,"pSD":0.0032,"pScaled":0.00211,"pRank":35,"nSamples":50,"individualID.1":22,"individualID.2":47,"transmission":false,"snpDist":8,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":1192,"infectionDiff":1962,"infectionDiffY":5.37534,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"022_048","label":"SNPs","pAvg":0.00562,"pSD":0.00246,"pScaled":0.00248,"pRank":28,"nSamples":50,"individualID.1":22,"individualID.2":48,"transmission":false,"snpDist":9,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":1474,"infectionDiff":1496,"infectionDiffY":4.09863,"timeCat":"5","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"022_049","label":"SNPs","pAvg":0.03078,"pSD":0.00805,"pScaled":0.02016,"pRank":10,"nSamples":50,"individualID.1":22,"individualID.2":49,"transmission":false,"snpDist":9,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":1210,"infectionDiff":1114,"infectionDiffY":3.05205,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"022_050","label":"SNPs","pAvg":0.01289,"pSD":0.00369,"pScaled":0.05629,"pRank":6,"nSamples":500,"individualID.1":22,"individualID.2":50,"transmission":false,"snpDist":3,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":1064,"infectionDiff":787,"infectionDiffY":2.15616,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"022_051","label":"SNPs","pAvg":0.01108,"pSD":0.00537,"pScaled":0.00525,"pRank":33,"nSamples":50,"individualID.1":22,"individualID.2":51,"transmission":false,"snpDist":3,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":978,"infectionDiff":1754,"infectionDiffY":4.80548,"timeCat":"5","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"022_052","label":"SNPs","pAvg":0.00751,"pSD":0.00216,"pScaled":0.00282,"pRank":42,"nSamples":50,"individualID.1":22,"individualID.2":52,"transmission":false,"snpDist":4,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":2811,"infectionDiff":2781,"infectionDiffY":7.61918,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"022_053","label":"SNPs","pAvg":0.00854,"pSD":0.0027,"pScaled":0.0057,"pRank":22,"nSamples":50,"individualID.1":22,"individualID.2":53,"transmission":false,"snpDist":4,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":1499,"infectionDiff":2246,"infectionDiffY":6.15342,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"022_054","label":"SNPs","pAvg":0.00465,"pSD":0.00134,"pScaled":0.00121,"pRank":47,"nSamples":50,"individualID.1":22,"individualID.2":54,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":2670,"infectionDiff":3170,"infectionDiffY":8.68493,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"022_055","label":"SNPs","pAvg":0.0076,"pSD":0.00217,"pScaled":0.00233,"pRank":27,"nSamples":50,"individualID.1":22,"individualID.2":55,"transmission":false,"snpDist":4,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":1653,"infectionDiff":2438,"infectionDiffY":6.67945,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"022_056","label":"SNPs","pAvg":0.00769,"pSD":0.0024,"pScaled":0.00184,"pRank":30,"nSamples":50,"individualID.1":22,"individualID.2":56,"transmission":false,"snpDist":4,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":2077,"infectionDiff":2522,"infectionDiffY":6.90959,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"022_057","label":"SNPs","pAvg":0.00765,"pSD":0.00221,"pScaled":0.00153,"pRank":34,"nSamples":50,"individualID.1":22,"individualID.2":57,"transmission":false,"snpDist":5,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":2640,"infectionDiff":3172,"infectionDiffY":8.69041,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"022_058","label":"SNPs","pAvg":0.00751,"pSD":0.0022,"pScaled":0.00741,"pRank":36,"nSamples":500,"individualID.1":22,"individualID.2":58,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":2925,"infectionDiff":2861,"infectionDiffY":7.83836,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"022_059","label":"SNPs","pAvg":0.02118,"pSD":0.00797,"pScaled":0.03045,"pRank":14,"nSamples":500,"individualID.1":22,"individualID.2":59,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":2304,"infectionDiff":1325,"infectionDiffY":3.63014,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"022_060","label":"SNPs","pAvg":0.01478,"pSD":0.00398,"pScaled":0.00716,"pRank":26,"nSamples":50,"individualID.1":22,"individualID.2":60,"transmission":false,"snpDist":4,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":2966,"infectionDiff":3503,"infectionDiffY":9.59726,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"022_061","label":"SNPs","pAvg":0.00139,"pSD":0.00047,"pScaled":0.00264,"pRank":49,"nSamples":500,"individualID.1":22,"individualID.2":61,"transmission":false,"snpDist":3,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":2759,"infectionDiff":2721,"infectionDiffY":7.45479,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"022_062","label":"SNPs","pAvg":0.00924,"pSD":0.00488,"pScaled":0.00245,"pRank":30,"nSamples":50,"individualID.1":22,"individualID.2":62,"transmission":false,"snpDist":8,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":1494,"infectionDiff":1625,"infectionDiffY":4.45205,"timeCat":"5","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"022_063","label":"SNPs","pAvg":0.01626,"pSD":0.00589,"pScaled":0.00782,"pRank":14,"nSamples":50,"individualID.1":22,"individualID.2":63,"transmission":false,"snpDist":9,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":926,"infectionDiff":1420,"infectionDiffY":3.89041,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"022_064","label":"SNPs","pAvg":0.00682,"pSD":0.00153,"pScaled":0.00259,"pRank":18,"nSamples":50,"individualID.1":22,"individualID.2":64,"transmission":false,"snpDist":5,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":1709,"infectionDiff":2402,"infectionDiffY":6.58082,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"022_065","label":"SNPs","pAvg":0.0028,"pSD":0.00098,"pScaled":0.00216,"pRank":31,"nSamples":50,"individualID.1":22,"individualID.2":65,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":1717,"infectionDiff":2335,"infectionDiffY":6.39726,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"022_066","label":"SNPs","pAvg":0.02256,"pSD":0.00553,"pScaled":0.00596,"pRank":10,"nSamples":50,"individualID.1":22,"individualID.2":66,"transmission":false,"snpDist":5,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":1864,"infectionDiff":2481,"infectionDiffY":6.79726,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"022_067","label":"SNPs","pAvg":0.00811,"pSD":0.00233,"pScaled":0.00205,"pRank":49,"nSamples":50,"individualID.1":22,"individualID.2":67,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":2985,"infectionDiff":3567,"infectionDiffY":9.7726,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"022_068","label":"SNPs","pAvg":0.42432,"pSD":0.49135,"pScaled":0.0927,"pRank":6,"nSamples":86,"individualID.1":22,"individualID.2":68,"transmission":false,"snpDist":1,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":2592,"infectionDiff":3219,"infectionDiffY":8.81918,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":true} {"pairID":"022_069","label":"SNPs","pAvg":0.00147,"pSD":0.00047,"pScaled":0.00047,"pRank":72,"nSamples":50,"individualID.1":22,"individualID.2":69,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":2636,"infectionDiff":3245,"infectionDiffY":8.89041,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"022_070","label":"SNPs","pAvg":0.01204,"pSD":0.00585,"pScaled":0.00373,"pRank":24,"nSamples":50,"individualID.1":22,"individualID.2":70,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":1173,"infectionDiff":1663,"infectionDiffY":4.55616,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"022_071","label":"SNPs","pAvg":0.01268,"pSD":0.00389,"pScaled":0.0129,"pRank":23,"nSamples":500,"individualID.1":22,"individualID.2":71,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":2691,"infectionDiff":1922,"infectionDiffY":5.26575,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"022_072","label":"SNPs","pAvg":0.00446,"pSD":0.0012,"pScaled":0.00136,"pRank":30,"nSamples":50,"individualID.1":22,"individualID.2":72,"transmission":false,"snpDist":9,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":1132,"infectionDiff":1841,"infectionDiffY":5.04384,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"022_073","label":"SNPs","pAvg":0.00418,"pSD":0.00124,"pScaled":0.00308,"pRank":20,"nSamples":50,"individualID.1":22,"individualID.2":73,"transmission":false,"snpDist":5,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":2213,"infectionDiff":2592,"infectionDiffY":7.10137,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"022_074","label":"SNPs","pAvg":0.0013,"pSD":0.0005,"pScaled":0.00071,"pRank":39,"nSamples":50,"individualID.1":22,"individualID.2":74,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":2053,"infectionDiff":1972,"infectionDiffY":5.40274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"022_075","label":"SNPs","pAvg":0.00311,"pSD":0.00099,"pScaled":0.01349,"pRank":22,"nSamples":500,"individualID.1":22,"individualID.2":75,"transmission":false,"snpDist":8,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":2720,"infectionDiff":3545,"infectionDiffY":9.71233,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"022_076","label":"SNPs","pAvg":0.59188,"pSD":0.49176,"pScaled":0.14507,"pRank":4,"nSamples":122,"individualID.1":22,"individualID.2":76,"transmission":false,"snpDist":1,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":2954,"infectionDiff":3219,"infectionDiffY":8.81918,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":true} {"pairID":"022_077","label":"SNPs","pAvg":0.42069,"pSD":0.49444,"pScaled":0.09308,"pRank":6,"nSamples":86,"individualID.1":22,"individualID.2":77,"transmission":false,"snpDist":0,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":2107,"infectionDiff":2934,"infectionDiffY":8.03836,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":true} {"pairID":"022_078","label":"SNPs","pAvg":0.01493,"pSD":0.0041,"pScaled":0.00331,"pRank":29,"nSamples":50,"individualID.1":22,"individualID.2":78,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":2798,"infectionDiff":3247,"infectionDiffY":8.89589,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"022_079","label":"SNPs","pAvg":0.00408,"pSD":0.00118,"pScaled":0.00205,"pRank":30,"nSamples":50,"individualID.1":22,"individualID.2":79,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":2207,"infectionDiff":2530,"infectionDiffY":6.93151,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"022_080","label":"SNPs","pAvg":0.0021,"pSD":0.00066,"pScaled":0.01534,"pRank":11,"nSamples":500,"individualID.1":22,"individualID.2":80,"transmission":false,"snpDist":7,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":2215,"infectionDiff":2462,"infectionDiffY":6.74521,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"022_081","label":"SNPs","pAvg":0.00474,"pSD":0.00141,"pScaled":0.00118,"pRank":38,"nSamples":50,"individualID.1":22,"individualID.2":81,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":2931,"infectionDiff":3629,"infectionDiffY":9.94247,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"022_082","label":"SNPs","pAvg":0.52227,"pSD":0.49888,"pScaled":0.1137,"pRank":6,"nSamples":104,"individualID.1":22,"individualID.2":82,"transmission":false,"snpDist":2,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":2935,"infectionDiff":3707,"infectionDiffY":10.15616,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":true} {"pairID":"022_083","label":"SNPs","pAvg":0.01023,"pSD":0.00277,"pScaled":0.00398,"pRank":31,"nSamples":50,"individualID.1":22,"individualID.2":83,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":2711,"infectionDiff":3176,"infectionDiffY":8.70137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"022_084","label":"SNPs","pAvg":0.00041,"pSD":0.00129,"pScaled":0.00021,"pRank":66,"nSamples":500,"individualID.1":22,"individualID.2":84,"transmission":false,"snpDist":13,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":2954,"infectionDiff":3224,"infectionDiffY":8.83288,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"022_085","label":"SNPs","pAvg":0.00046,"pSD":0.00143,"pScaled":0.00016,"pRank":57,"nSamples":500,"individualID.1":22,"individualID.2":85,"transmission":false,"snpDist":11,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":2066,"infectionDiff":2889,"infectionDiffY":7.91507,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"022_086","label":"SNPs","pAvg":0.00144,"pSD":0.00041,"pScaled":0.00046,"pRank":48,"nSamples":50,"individualID.1":22,"individualID.2":86,"transmission":false,"snpDist":4,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":1904,"infectionDiff":2518,"infectionDiffY":6.89863,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"022_087","label":"SNPs","pAvg":0.00222,"pSD":0.00074,"pScaled":0.00181,"pRank":26,"nSamples":50,"individualID.1":22,"individualID.2":87,"transmission":false,"snpDist":8,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":2439,"infectionDiff":3057,"infectionDiffY":8.37534,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"022_088","label":"SNPs","pAvg":0.35544,"pSD":0.47676,"pScaled":0.06878,"pRank":7,"nSamples":77,"individualID.1":22,"individualID.2":88,"transmission":false,"snpDist":1,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":2549,"infectionDiff":3392,"infectionDiffY":9.29315,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":true} {"pairID":"022_089","label":"SNPs","pAvg":0.00048,"pSD":0.00149,"pScaled":0.00015,"pRank":65,"nSamples":500,"individualID.1":22,"individualID.2":89,"transmission":false,"snpDist":12,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":2840,"infectionDiff":3228,"infectionDiffY":8.84384,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"022_090","label":"SNPs","pAvg":0.0047,"pSD":0.00117,"pScaled":0.00122,"pRank":32,"nSamples":50,"individualID.1":22,"individualID.2":90,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":2911,"infectionDiff":3454,"infectionDiffY":9.46301,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"022_091","label":"SNPs","pAvg":0.00082,"pSD":0.00257,"pScaled":0.00041,"pRank":54,"nSamples":500,"individualID.1":22,"individualID.2":91,"transmission":false,"snpDist":12,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":2932,"infectionDiff":3046,"infectionDiffY":8.34521,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"022_092","label":"SNPs","pAvg":0.00041,"pSD":0.00127,"pScaled":0.00016,"pRank":67,"nSamples":500,"individualID.1":22,"individualID.2":92,"transmission":false,"snpDist":12,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":2979,"infectionDiff":3197,"infectionDiffY":8.7589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"022_093","label":"SNPs","pAvg":0.00075,"pSD":0.00236,"pScaled":0.00021,"pRank":57,"nSamples":500,"individualID.1":22,"individualID.2":93,"transmission":false,"snpDist":13,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":2816,"infectionDiff":3422,"infectionDiffY":9.37534,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"022_094","label":"SNPs","pAvg":0.00292,"pSD":0.00096,"pScaled":0.00096,"pRank":50,"nSamples":50,"individualID.1":22,"individualID.2":94,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":2862,"infectionDiff":3694,"infectionDiffY":10.12055,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"022_095","label":"SNPs","pAvg":0.00218,"pSD":0.00078,"pScaled":0.00111,"pRank":27,"nSamples":50,"individualID.1":22,"individualID.2":95,"transmission":false,"snpDist":8,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":2444,"infectionDiff":3126,"infectionDiffY":8.56438,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"022_096","label":"SNPs","pAvg":0.00145,"pSD":0.0005,"pScaled":0.00051,"pRank":62,"nSamples":50,"individualID.1":22,"individualID.2":96,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":2539,"infectionDiff":3358,"infectionDiffY":9.2,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"022_097","label":"SNPs","pAvg":0.00805,"pSD":0.00217,"pScaled":0.0018,"pRank":34,"nSamples":50,"individualID.1":22,"individualID.2":97,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":2782,"infectionDiff":3514,"infectionDiffY":9.6274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"022_098","label":"SNPs","pAvg":0.00093,"pSD":0.00291,"pScaled":0.00026,"pRank":58,"nSamples":500,"individualID.1":22,"individualID.2":98,"transmission":false,"snpDist":12,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":2601,"infectionDiff":3287,"infectionDiffY":9.00548,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"022_099","label":"SNPs","pAvg":0.00257,"pSD":0.00084,"pScaled":0.00088,"pRank":44,"nSamples":50,"individualID.1":22,"individualID.2":99,"transmission":false,"snpDist":5,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":2584,"infectionDiff":3151,"infectionDiffY":8.63288,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"022_100","label":"SNPs","pAvg":0.00391,"pSD":0.0011,"pScaled":0.00115,"pRank":69,"nSamples":50,"individualID.1":22,"individualID.2":100,"transmission":false,"infectionDate.1":"1989-06-06 04:07:23","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1991-10-22 14:29:51","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":2783,"infectionDiff":3529,"infectionDiffY":9.66849,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"023_060","label":"SNPs","pAvg":0.00837,"pSD":0.0258,"pScaled":0.00406,"pRank":43,"nSamples":500,"individualID.1":23,"individualID.2":60,"transmission":false,"snpDist":12,"infectionDate.1":"1998-07-22 16:40:51","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-12-01 16:41:38","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":4,"infectionDiff":169,"infectionDiffY":0.46301,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"023_067","label":"SNPs","pAvg":0.04785,"pSD":0.01361,"pScaled":0.01207,"pRank":11,"nSamples":50,"individualID.1":23,"individualID.2":67,"transmission":false,"infectionDate.1":"1998-07-22 16:40:51","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-12-01 16:41:38","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":23,"infectionDiff":233,"infectionDiffY":0.63836,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"023_075","label":"SNPs","pAvg":0.0019,"pSD":0.00597,"pScaled":0.00823,"pRank":27,"nSamples":500,"individualID.1":23,"individualID.2":75,"transmission":false,"snpDist":16,"infectionDate.1":"1998-07-22 16:40:51","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-12-01 16:41:38","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-242,"infectionDiff":212,"infectionDiffY":0.58082,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"023_081","label":"SNPs","pAvg":0.02782,"pSD":0.00608,"pScaled":0.00693,"pRank":7,"nSamples":50,"individualID.1":23,"individualID.2":81,"transmission":false,"infectionDate.1":"1998-07-22 16:40:51","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-12-01 16:41:38","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":-31,"infectionDiff":296,"infectionDiffY":0.81096,"timeCat":"1","Z1":"1","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"023_082","label":"SNPs","pAvg":0.03013,"pSD":0.00743,"pScaled":0.00656,"pRank":15,"nSamples":50,"individualID.1":23,"individualID.2":82,"transmission":false,"snpDist":10,"infectionDate.1":"1998-07-22 16:40:51","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-12-01 16:41:38","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":-27,"infectionDiff":373,"infectionDiffY":1.02192,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"023_088","label":"SNPs","pAvg":0.04421,"pSD":0.01037,"pScaled":0.00856,"pRank":11,"nSamples":50,"individualID.1":23,"individualID.2":88,"transmission":false,"snpDist":9,"infectionDate.1":"1998-07-22 16:40:51","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-12-01 16:41:38","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-413,"infectionDiff":58,"infectionDiffY":0.1589,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"023_090","label":"SNPs","pAvg":0.02719,"pSD":0.00716,"pScaled":0.00705,"pRank":10,"nSamples":50,"individualID.1":23,"individualID.2":90,"transmission":false,"infectionDate.1":"1998-07-22 16:40:51","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-12-01 16:41:38","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":-51,"infectionDiff":121,"infectionDiffY":0.33151,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"023_093","label":"SNPs","pAvg":0.00428,"pSD":0.01313,"pScaled":0.00116,"pRank":24,"nSamples":500,"individualID.1":23,"individualID.2":93,"transmission":false,"snpDist":15,"infectionDate.1":"1998-07-22 16:40:51","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-12-01 16:41:38","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":-146,"infectionDiff":89,"infectionDiffY":0.24384,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"023_094","label":"SNPs","pAvg":0.01712,"pSD":0.0054,"pScaled":0.00564,"pRank":16,"nSamples":50,"individualID.1":23,"individualID.2":94,"transmission":false,"infectionDate.1":"1998-07-22 16:40:51","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-12-01 16:41:38","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":-100,"infectionDiff":360,"infectionDiffY":0.9863,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"023_096","label":"SNPs","pAvg":0.00858,"pSD":0.00288,"pScaled":0.00301,"pRank":19,"nSamples":50,"individualID.1":23,"individualID.2":96,"transmission":false,"infectionDate.1":"1998-07-22 16:40:51","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-12-01 16:41:38","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-423,"infectionDiff":24,"infectionDiffY":0.06575,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"023_097","label":"SNPs","pAvg":0.04523,"pSD":0.01077,"pScaled":0.01013,"pRank":12,"nSamples":50,"individualID.1":23,"individualID.2":97,"transmission":false,"infectionDate.1":"1998-07-22 16:40:51","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-12-01 16:41:38","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":-180,"infectionDiff":180,"infectionDiffY":0.49315,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"023_100","label":"SNPs","pAvg":0.02325,"pSD":0.00677,"pScaled":0.00685,"pRank":22,"nSamples":50,"individualID.1":23,"individualID.2":100,"transmission":false,"infectionDate.1":"1998-07-22 16:40:51","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-12-01 16:41:38","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":-179,"infectionDiff":195,"infectionDiffY":0.53425,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"024_006","label":"SNPs","pAvg":0.07626,"pSD":0.01931,"pScaled":0.04871,"pRank":4,"nSamples":50,"individualID.1":24,"individualID.2":6,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":-68,"infectionDiff":500,"infectionDiffY":1.36986,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"024_009","label":"SNPs","pAvg":0.00192,"pSD":0.00598,"pScaled":0.00856,"pRank":31,"nSamples":500,"individualID.1":24,"individualID.2":9,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":2456,"infectionDiff":1183,"infectionDiffY":3.2411,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"024_010","label":"SNPs","pAvg":0.0267,"pSD":0.00581,"pScaled":0.01934,"pRank":9,"nSamples":50,"individualID.1":24,"individualID.2":10,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":-93,"infectionDiff":224,"infectionDiffY":0.6137,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"024_014","label":"SNPs","pAvg":0.02822,"pSD":0.00834,"pScaled":0.0155,"pRank":17,"nSamples":50,"individualID.1":24,"individualID.2":14,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":486,"infectionDiff":760,"infectionDiffY":2.08219,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"024_017","label":"SNPs","pAvg":0.04242,"pSD":0.00977,"pScaled":0.05914,"pRank":7,"nSamples":500,"individualID.1":24,"individualID.2":17,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":1624,"infectionDiff":532,"infectionDiffY":1.45753,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"024_018","label":"SNPs","pAvg":0.0177,"pSD":0.00575,"pScaled":0.02006,"pRank":18,"nSamples":500,"individualID.1":24,"individualID.2":18,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":379,"infectionDiff":957,"infectionDiffY":2.62192,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"024_021","label":"SNPs","pAvg":0.02929,"pSD":0.00841,"pScaled":0.02796,"pRank":17,"nSamples":500,"individualID.1":24,"individualID.2":21,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":1824,"infectionDiff":954,"infectionDiffY":2.6137,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"024_023","label":"SNPs","pAvg":0.01097,"pSD":0.00261,"pScaled":0.00488,"pRank":32,"nSamples":50,"individualID.1":24,"individualID.2":23,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":2613,"infectionDiff":2722,"infectionDiffY":7.45753,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"024_026","label":"SNPs","pAvg":0.01476,"pSD":0.00341,"pScaled":0.00519,"pRank":17,"nSamples":50,"individualID.1":24,"individualID.2":26,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":2217,"infectionDiff":2019,"infectionDiffY":5.53151,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"024_027","label":"SNPs","pAvg":0.00891,"pSD":0.00193,"pScaled":0.00318,"pRank":42,"nSamples":50,"individualID.1":24,"individualID.2":27,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":2389,"infectionDiff":2608,"infectionDiffY":7.14521,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"024_028","label":"SNPs","pAvg":0.02357,"pSD":0.0069,"pScaled":0.00658,"pRank":25,"nSamples":50,"individualID.1":24,"individualID.2":28,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":1606,"infectionDiff":1433,"infectionDiffY":3.92603,"timeCat":"4","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"024_030","label":"SNPs","pAvg":0.06034,"pSD":0.01394,"pScaled":0.04219,"pRank":4,"nSamples":50,"individualID.1":24,"individualID.2":30,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":-143,"infectionDiff":439,"infectionDiffY":1.20274,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"024_032","label":"SNPs","pAvg":0.90195,"pSD":0.29446,"pScaled":0.61493,"pRank":1,"nSamples":500,"individualID.1":24,"individualID.2":32,"transmission":true,"snpDist":2,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":1287,"infectionDiff":385,"infectionDiffY":1.05479,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":true} {"pairID":"024_033","label":"SNPs","pAvg":0.82545,"pSD":0.37828,"pScaled":0.37639,"pRank":1,"nSamples":284,"individualID.1":24,"individualID.2":33,"transmission":true,"snpDist":2,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":1834,"infectionDiff":2290,"infectionDiffY":6.27397,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"024_034","label":"SNPs","pAvg":0.00217,"pSD":0.00665,"pScaled":0.00728,"pRank":15,"nSamples":500,"individualID.1":24,"individualID.2":34,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":856,"infectionDiff":4,"infectionDiffY":0.01096,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"024_035","label":"SNPs","pAvg":0.01689,"pSD":0.00561,"pScaled":0.00439,"pRank":26,"nSamples":50,"individualID.1":24,"individualID.2":35,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":1796,"infectionDiff":1087,"infectionDiffY":2.97808,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"024_036","label":"SNPs","pAvg":0.00894,"pSD":0.00195,"pScaled":0.00242,"pRank":46,"nSamples":50,"individualID.1":24,"individualID.2":36,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":1595,"infectionDiff":1898,"infectionDiffY":5.2,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"024_037","label":"SNPs","pAvg":0.00386,"pSD":0.01197,"pScaled":0.00389,"pRank":38,"nSamples":500,"individualID.1":24,"individualID.2":37,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":1982,"infectionDiff":1420,"infectionDiffY":3.89041,"timeCat":"4","Z1":"1","Z2":"1","Z3":"3","Z4":"1","snpClose":false} {"pairID":"024_038","label":"SNPs","pAvg":0.00491,"pSD":0.0155,"pScaled":0.00583,"pRank":27,"nSamples":500,"individualID.1":24,"individualID.2":38,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":1044,"infectionDiff":1065,"infectionDiffY":2.91781,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"024_039","label":"SNPs","pAvg":0.00664,"pSD":0.02046,"pScaled":0.01433,"pRank":16,"nSamples":500,"individualID.1":24,"individualID.2":39,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":1209,"infectionDiff":510,"infectionDiffY":1.39726,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"024_040","label":"SNPs","pAvg":0.01012,"pSD":0.00244,"pScaled":0.00905,"pRank":29,"nSamples":500,"individualID.1":24,"individualID.2":40,"transmission":false,"snpDist":10,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":1618,"infectionDiff":2154,"infectionDiffY":5.90137,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"024_041","label":"SNPs","pAvg":0.00944,"pSD":0.02878,"pScaled":0.02451,"pRank":15,"nSamples":500,"individualID.1":24,"individualID.2":41,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":2467,"infectionDiff":354,"infectionDiffY":0.96986,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"024_042","label":"SNPs","pAvg":0.05759,"pSD":0.01197,"pScaled":0.02126,"pRank":4,"nSamples":50,"individualID.1":24,"individualID.2":42,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":-129,"infectionDiff":6,"infectionDiffY":0.01644,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"024_043","label":"SNPs","pAvg":0.01872,"pSD":0.00539,"pScaled":0.02527,"pRank":13,"nSamples":500,"individualID.1":24,"individualID.2":43,"transmission":false,"snpDist":3,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":2593,"infectionDiff":773,"infectionDiffY":2.11781,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"024_044","label":"SNPs","pAvg":0.62801,"pSD":0.4753,"pScaled":0.16896,"pRank":3,"nSamples":131,"individualID.1":24,"individualID.2":44,"transmission":false,"snpDist":0,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":213,"infectionDiff":674,"infectionDiffY":1.84658,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":true} {"pairID":"024_045","label":"SNPs","pAvg":0.00989,"pSD":0.00479,"pScaled":0.00599,"pRank":25,"nSamples":50,"individualID.1":24,"individualID.2":45,"transmission":false,"snpDist":3,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":1991,"infectionDiff":1665,"infectionDiffY":4.56164,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"024_046","label":"SNPs","pAvg":0.90734,"pSD":0.27832,"pScaled":0.5249,"pRank":1,"nSamples":500,"individualID.1":24,"individualID.2":46,"transmission":false,"snpDist":1,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":896,"infectionDiff":619,"infectionDiffY":1.69589,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"1","snpClose":true} {"pairID":"024_047","label":"SNPs","pAvg":0.4792,"pSD":0.49671,"pScaled":0.10336,"pRank":5,"nSamples":95,"individualID.1":24,"individualID.2":47,"transmission":false,"snpDist":1,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":842,"infectionDiff":1350,"infectionDiffY":3.69863,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":true} {"pairID":"024_048","label":"SNPs","pAvg":0.84334,"pSD":0.3585,"pScaled":0.37179,"pRank":1,"nSamples":311,"individualID.1":24,"individualID.2":48,"transmission":false,"snpDist":2,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":1125,"infectionDiff":884,"infectionDiffY":2.42192,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"1","snpClose":true} {"pairID":"024_049","label":"SNPs","pAvg":0.90419,"pSD":0.28775,"pScaled":0.59219,"pRank":1,"nSamples":500,"individualID.1":24,"individualID.2":49,"transmission":false,"snpDist":2,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":860,"infectionDiff":503,"infectionDiffY":1.37808,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"024_050","label":"SNPs","pAvg":0.00971,"pSD":0.00227,"pScaled":0.0424,"pRank":11,"nSamples":500,"individualID.1":24,"individualID.2":50,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":715,"infectionDiff":175,"infectionDiffY":0.47945,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"024_051","label":"SNPs","pAvg":0.01201,"pSD":0.00358,"pScaled":0.00569,"pRank":30,"nSamples":50,"individualID.1":24,"individualID.2":51,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":629,"infectionDiff":1142,"infectionDiffY":3.12877,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"024_052","label":"SNPs","pAvg":0.01546,"pSD":0.00423,"pScaled":0.0058,"pRank":22,"nSamples":50,"individualID.1":24,"individualID.2":52,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":2462,"infectionDiff":2170,"infectionDiffY":5.94521,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"024_053","label":"SNPs","pAvg":0.00164,"pSD":0.00548,"pScaled":0.0011,"pRank":42,"nSamples":500,"individualID.1":24,"individualID.2":53,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":1149,"infectionDiff":1634,"infectionDiffY":4.47671,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"024_054","label":"SNPs","pAvg":0.00091,"pSD":0.00282,"pScaled":0.00024,"pRank":64,"nSamples":500,"individualID.1":24,"individualID.2":54,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":2320,"infectionDiff":2558,"infectionDiffY":7.00822,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"024_055","label":"SNPs","pAvg":0.00052,"pSD":0.00162,"pScaled":0.00016,"pRank":54,"nSamples":500,"individualID.1":24,"individualID.2":55,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":1304,"infectionDiff":1826,"infectionDiffY":5.00274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"024_056","label":"SNPs","pAvg":0.0015,"pSD":0.00462,"pScaled":0.00036,"pRank":50,"nSamples":500,"individualID.1":24,"individualID.2":56,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":1727,"infectionDiff":1911,"infectionDiffY":5.23562,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"024_057","label":"SNPs","pAvg":0.00154,"pSD":0.00474,"pScaled":0.00031,"pRank":54,"nSamples":500,"individualID.1":24,"individualID.2":57,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":2290,"infectionDiff":2561,"infectionDiffY":7.01644,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"024_058","label":"SNPs","pAvg":0.00145,"pSD":0.00448,"pScaled":0.00143,"pRank":55,"nSamples":500,"individualID.1":24,"individualID.2":58,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":2575,"infectionDiff":2249,"infectionDiffY":6.16164,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"024_059","label":"SNPs","pAvg":0.00219,"pSD":0.0067,"pScaled":0.00315,"pRank":28,"nSamples":500,"individualID.1":24,"individualID.2":59,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":1955,"infectionDiff":713,"infectionDiffY":1.95342,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"024_060","label":"SNPs","pAvg":0.00102,"pSD":0.00313,"pScaled":0.00049,"pRank":73,"nSamples":500,"individualID.1":24,"individualID.2":60,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":2617,"infectionDiff":2891,"infectionDiffY":7.92055,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"024_061","label":"SNPs","pAvg":0.00451,"pSD":0.00102,"pScaled":0.00857,"pRank":23,"nSamples":500,"individualID.1":24,"individualID.2":61,"transmission":false,"snpDist":10,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":2410,"infectionDiff":2109,"infectionDiffY":5.77808,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"024_062","label":"SNPs","pAvg":0.7052,"pSD":0.45231,"pScaled":0.18665,"pRank":2,"nSamples":167,"individualID.1":24,"individualID.2":62,"transmission":false,"snpDist":1,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":1145,"infectionDiff":1013,"infectionDiffY":2.77534,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":true} {"pairID":"024_063","label":"SNPs","pAvg":0.79291,"pSD":0.40349,"pScaled":0.38153,"pRank":2,"nSamples":239,"individualID.1":24,"individualID.2":63,"transmission":false,"snpDist":2,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":576,"infectionDiff":808,"infectionDiffY":2.2137,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":true} {"pairID":"024_064","label":"SNPs","pAvg":0.00091,"pSD":0.003,"pScaled":0.00034,"pRank":51,"nSamples":500,"individualID.1":24,"individualID.2":64,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":1359,"infectionDiff":1790,"infectionDiffY":4.90411,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"024_065","label":"SNPs","pAvg":0.00082,"pSD":0.00269,"pScaled":0.00064,"pRank":44,"nSamples":500,"individualID.1":24,"individualID.2":65,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":1367,"infectionDiff":1723,"infectionDiffY":4.72055,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"024_066","label":"SNPs","pAvg":0.00107,"pSD":0.00335,"pScaled":0.00028,"pRank":52,"nSamples":500,"individualID.1":24,"individualID.2":66,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":1514,"infectionDiff":1870,"infectionDiffY":5.12329,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"024_067","label":"SNPs","pAvg":0.00147,"pSD":0.00452,"pScaled":0.00037,"pRank":73,"nSamples":500,"individualID.1":24,"individualID.2":67,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":2636,"infectionDiff":2955,"infectionDiffY":8.09589,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"024_068","label":"SNPs","pAvg":0.00453,"pSD":0.00108,"pScaled":0.00099,"pRank":70,"nSamples":50,"individualID.1":24,"individualID.2":68,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":2242,"infectionDiff":2607,"infectionDiffY":7.14247,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"024_069","label":"SNPs","pAvg":0.00514,"pSD":0.0013,"pScaled":0.00165,"pRank":29,"nSamples":50,"individualID.1":24,"individualID.2":69,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":2287,"infectionDiff":2634,"infectionDiffY":7.21644,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"024_070","label":"SNPs","pAvg":0.76082,"pSD":0.41945,"pScaled":0.23557,"pRank":2,"nSamples":203,"individualID.1":24,"individualID.2":70,"transmission":false,"snpDist":2,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":824,"infectionDiff":1051,"infectionDiffY":2.87945,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"024_071","label":"SNPs","pAvg":0.0186,"pSD":0.0053,"pScaled":0.01892,"pRank":21,"nSamples":500,"individualID.1":24,"individualID.2":71,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":2342,"infectionDiff":1310,"infectionDiffY":3.58904,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"024_072","label":"SNPs","pAvg":0.6198,"pSD":0.48577,"pScaled":0.18861,"pRank":4,"nSamples":131,"individualID.1":24,"individualID.2":72,"transmission":false,"snpDist":2,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":783,"infectionDiff":1229,"infectionDiffY":3.36712,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":true} {"pairID":"024_073","label":"SNPs","pAvg":0.00393,"pSD":0.00119,"pScaled":0.00289,"pRank":25,"nSamples":50,"individualID.1":24,"individualID.2":73,"transmission":false,"snpDist":10,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":1864,"infectionDiff":1980,"infectionDiffY":5.42466,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"024_074","label":"SNPs","pAvg":0.00333,"pSD":0.00124,"pScaled":0.00183,"pRank":23,"nSamples":50,"individualID.1":24,"individualID.2":74,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":1704,"infectionDiff":1360,"infectionDiffY":3.72603,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"024_075","label":"SNPs","pAvg":0.00037,"pSD":0.00115,"pScaled":0.00159,"pRank":53,"nSamples":500,"individualID.1":24,"individualID.2":75,"transmission":false,"snpDist":15,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":2370,"infectionDiff":2933,"infectionDiffY":8.03562,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"024_076","label":"SNPs","pAvg":0.00846,"pSD":0.00221,"pScaled":0.00207,"pRank":40,"nSamples":50,"individualID.1":24,"individualID.2":76,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":2605,"infectionDiff":2607,"infectionDiffY":7.14247,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"024_077","label":"SNPs","pAvg":0.00702,"pSD":0.00202,"pScaled":0.00155,"pRank":42,"nSamples":50,"individualID.1":24,"individualID.2":77,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":1758,"infectionDiff":2322,"infectionDiffY":6.36164,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"024_078","label":"SNPs","pAvg":0.01009,"pSD":0.0022,"pScaled":0.00223,"pRank":42,"nSamples":50,"individualID.1":24,"individualID.2":78,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":2449,"infectionDiff":2635,"infectionDiffY":7.21918,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"024_079","label":"SNPs","pAvg":0.00163,"pSD":0.00044,"pScaled":0.00082,"pRank":48,"nSamples":50,"individualID.1":24,"individualID.2":79,"transmission":false,"snpDist":4,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":1857,"infectionDiff":1919,"infectionDiffY":5.25753,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"024_080","label":"SNPs","pAvg":0.00018,"pSD":0.00056,"pScaled":0.00129,"pRank":53,"nSamples":500,"individualID.1":24,"individualID.2":80,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":1866,"infectionDiff":1851,"infectionDiffY":5.07123,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"024_081","label":"SNPs","pAvg":0.00381,"pSD":0.00134,"pScaled":0.00095,"pRank":50,"nSamples":50,"individualID.1":24,"individualID.2":81,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":2582,"infectionDiff":3018,"infectionDiffY":8.26849,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"024_082","label":"SNPs","pAvg":0.00448,"pSD":0.00115,"pScaled":0.00098,"pRank":69,"nSamples":50,"individualID.1":24,"individualID.2":82,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":2586,"infectionDiff":3095,"infectionDiffY":8.47945,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"024_083","label":"SNPs","pAvg":0.00468,"pSD":0.00103,"pScaled":0.00182,"pRank":63,"nSamples":50,"individualID.1":24,"individualID.2":83,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":2362,"infectionDiff":2565,"infectionDiffY":7.0274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"024_084","label":"SNPs","pAvg":0.00169,"pSD":0.00049,"pScaled":0.00085,"pRank":29,"nSamples":50,"individualID.1":24,"individualID.2":84,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":2605,"infectionDiff":2613,"infectionDiffY":7.1589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"024_085","label":"SNPs","pAvg":0.00188,"pSD":0.0005,"pScaled":0.00064,"pRank":27,"nSamples":50,"individualID.1":24,"individualID.2":85,"transmission":false,"snpDist":4,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":1717,"infectionDiff":2278,"infectionDiffY":6.2411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"024_086","label":"SNPs","pAvg":0.00527,"pSD":0.00124,"pScaled":0.00168,"pRank":20,"nSamples":50,"individualID.1":24,"individualID.2":86,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":1555,"infectionDiff":1906,"infectionDiffY":5.22192,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"024_087","label":"SNPs","pAvg":0.00054,"pSD":0.00166,"pScaled":0.00044,"pRank":51,"nSamples":500,"individualID.1":24,"individualID.2":87,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":2090,"infectionDiff":2445,"infectionDiffY":6.69863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"024_088","label":"SNPs","pAvg":0.00516,"pSD":0.00127,"pScaled":0.001,"pRank":60,"nSamples":50,"individualID.1":24,"individualID.2":88,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":2199,"infectionDiff":2780,"infectionDiffY":7.61644,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"024_089","label":"SNPs","pAvg":0.00204,"pSD":0.00057,"pScaled":0.00065,"pRank":28,"nSamples":50,"individualID.1":24,"individualID.2":89,"transmission":false,"snpDist":5,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":2491,"infectionDiff":2616,"infectionDiffY":7.16712,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"024_090","label":"SNPs","pAvg":0.00194,"pSD":0.00048,"pScaled":0.0005,"pRank":47,"nSamples":50,"individualID.1":24,"individualID.2":90,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":2562,"infectionDiff":2843,"infectionDiffY":7.78904,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"024_091","label":"SNPs","pAvg":0.00525,"pSD":0.00122,"pScaled":0.00263,"pRank":19,"nSamples":50,"individualID.1":24,"individualID.2":91,"transmission":false,"snpDist":5,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":2583,"infectionDiff":2434,"infectionDiffY":6.66849,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"024_092","label":"SNPs","pAvg":0.00164,"pSD":0.00053,"pScaled":0.00066,"pRank":33,"nSamples":50,"individualID.1":24,"individualID.2":92,"transmission":false,"snpDist":5,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":2630,"infectionDiff":2585,"infectionDiffY":7.08219,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"024_093","label":"SNPs","pAvg":0.00213,"pSD":0.00063,"pScaled":0.00058,"pRank":39,"nSamples":50,"individualID.1":24,"individualID.2":93,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":2467,"infectionDiff":2811,"infectionDiffY":7.70137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"024_094","label":"SNPs","pAvg":0.00097,"pSD":0.00296,"pScaled":0.00032,"pRank":72,"nSamples":500,"individualID.1":24,"individualID.2":94,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":2513,"infectionDiff":3082,"infectionDiffY":8.44384,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"024_095","label":"SNPs","pAvg":0.00054,"pSD":0.00167,"pScaled":0.00027,"pRank":51,"nSamples":500,"individualID.1":24,"individualID.2":95,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":2095,"infectionDiff":2514,"infectionDiffY":6.88767,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"024_096","label":"SNPs","pAvg":0.00048,"pSD":0.00147,"pScaled":0.00017,"pRank":72,"nSamples":500,"individualID.1":24,"individualID.2":96,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":2190,"infectionDiff":2746,"infectionDiffY":7.52329,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"024_097","label":"SNPs","pAvg":0.00544,"pSD":0.00134,"pScaled":0.00122,"pRank":44,"nSamples":50,"individualID.1":24,"individualID.2":97,"transmission":false,"snpDist":5,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":2433,"infectionDiff":2902,"infectionDiffY":7.95068,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"024_098","label":"SNPs","pAvg":0.00391,"pSD":0.00108,"pScaled":0.00111,"pRank":26,"nSamples":50,"individualID.1":24,"individualID.2":98,"transmission":false,"snpDist":5,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":2252,"infectionDiff":2675,"infectionDiffY":7.32877,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"024_099","label":"SNPs","pAvg":0.0089,"pSD":0.00177,"pScaled":0.00304,"pRank":24,"nSamples":50,"individualID.1":24,"individualID.2":99,"transmission":false,"snpDist":10,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":2234,"infectionDiff":2539,"infectionDiffY":6.95616,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"024_100","label":"SNPs","pAvg":0.00816,"pSD":0.00231,"pScaled":0.00241,"pRank":48,"nSamples":50,"individualID.1":24,"individualID.2":100,"transmission":false,"snpDist":10,"infectionDate.1":"1991-02-07 21:59:42","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1992-10-05 23:05:30","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":2434,"infectionDiff":2917,"infectionDiffY":7.99178,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"025_003","label":"SNPs","pAvg":0.02685,"pSD":0.00698,"pScaled":0.08471,"pRank":5,"nSamples":500,"individualID.1":25,"individualID.2":3,"transmission":false,"snpDist":6,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1990-12-11 19:24:08","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1998-10-30 22:42:57","sampleDiff":3201,"infectionDiff":520,"infectionDiffY":1.42466,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"025_006","label":"SNPs","pAvg":0.01497,"pSD":0.00442,"pScaled":0.00956,"pRank":15,"nSamples":50,"individualID.1":25,"individualID.2":6,"transmission":false,"snpDist":4,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":917,"infectionDiff":1078,"infectionDiffY":2.95342,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_009","label":"SNPs","pAvg":0.00843,"pSD":0.00404,"pScaled":0.03755,"pRank":8,"nSamples":500,"individualID.1":25,"individualID.2":9,"transmission":false,"snpDist":10,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":3441,"infectionDiff":1761,"infectionDiffY":4.82466,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"025_010","label":"SNPs","pAvg":0.0432,"pSD":0.01238,"pScaled":0.0313,"pRank":4,"nSamples":50,"individualID.1":25,"individualID.2":10,"transmission":false,"snpDist":3,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":892,"infectionDiff":802,"infectionDiffY":2.19726,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"025_014","label":"SNPs","pAvg":0.01501,"pSD":0.00532,"pScaled":0.00825,"pRank":21,"nSamples":50,"individualID.1":25,"individualID.2":14,"transmission":false,"snpDist":3,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":1471,"infectionDiff":1339,"infectionDiffY":3.66849,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"025_017","label":"SNPs","pAvg":0.02118,"pSD":0.00797,"pScaled":0.02953,"pRank":11,"nSamples":500,"individualID.1":25,"individualID.2":17,"transmission":false,"snpDist":6,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":2609,"infectionDiff":1111,"infectionDiffY":3.04384,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"025_018","label":"SNPs","pAvg":0.01407,"pSD":0.00655,"pScaled":0.01595,"pRank":23,"nSamples":500,"individualID.1":25,"individualID.2":18,"transmission":false,"snpDist":5,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":1364,"infectionDiff":1535,"infectionDiffY":4.20548,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"025_021","label":"SNPs","pAvg":0.00631,"pSD":0.00303,"pScaled":0.00603,"pRank":32,"nSamples":500,"individualID.1":25,"individualID.2":21,"transmission":false,"snpDist":4,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":2809,"infectionDiff":1532,"infectionDiffY":4.19726,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"025_023","label":"SNPs","pAvg":0.01053,"pSD":0.00305,"pScaled":0.00468,"pRank":34,"nSamples":50,"individualID.1":25,"individualID.2":23,"transmission":false,"snpDist":6,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":3598,"infectionDiff":3300,"infectionDiffY":9.0411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"025_024","label":"SNPs","pAvg":0.02007,"pSD":0.00586,"pScaled":0.01551,"pRank":9,"nSamples":50,"individualID.1":25,"individualID.2":24,"transmission":false,"snpDist":5,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1991-02-07 21:59:42","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1992-10-05 23:05:30","sampleDiff":985,"infectionDiff":578,"infectionDiffY":1.58356,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_026","label":"SNPs","pAvg":0.00392,"pSD":0.00122,"pScaled":0.00138,"pRank":52,"nSamples":50,"individualID.1":25,"individualID.2":26,"transmission":false,"snpDist":5,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":3202,"infectionDiff":2597,"infectionDiffY":7.11507,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_027","label":"SNPs","pAvg":0.00685,"pSD":0.00214,"pScaled":0.00245,"pRank":60,"nSamples":50,"individualID.1":25,"individualID.2":27,"transmission":false,"snpDist":4,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":3374,"infectionDiff":3186,"infectionDiffY":8.72877,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"025_028","label":"SNPs","pAvg":0.01199,"pSD":0.00313,"pScaled":0.00335,"pRank":33,"nSamples":50,"individualID.1":25,"individualID.2":28,"transmission":false,"snpDist":4,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":2591,"infectionDiff":2011,"infectionDiffY":5.50959,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"025_029","label":"SNPs","pAvg":0.03394,"pSD":0.00809,"pScaled":0.08377,"pRank":5,"nSamples":500,"individualID.1":25,"individualID.2":29,"transmission":false,"snpDist":4,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1990-12-27 23:28:20","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1992-03-01 23:20:54","sampleDiff":767,"infectionDiff":536,"infectionDiffY":1.46849,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"025_030","label":"SNPs","pAvg":0.01325,"pSD":0.00362,"pScaled":0.00927,"pRank":14,"nSamples":50,"individualID.1":25,"individualID.2":30,"transmission":false,"snpDist":5,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":842,"infectionDiff":1017,"infectionDiffY":2.7863,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_031","label":"SNPs","pAvg":0.05123,"pSD":0.01389,"pScaled":0.08451,"pRank":6,"nSamples":500,"individualID.1":25,"individualID.2":31,"transmission":false,"snpDist":4,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1991-01-03 16:49:07","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1991-07-17 03:37:35","sampleDiff":538,"infectionDiff":543,"infectionDiffY":1.48767,"timeCat":"2","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"025_032","label":"SNPs","pAvg":0.06418,"pSD":0.0228,"pScaled":0.04376,"pRank":3,"nSamples":50,"individualID.1":25,"individualID.2":32,"transmission":false,"snpDist":7,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":2272,"infectionDiff":964,"infectionDiffY":2.6411,"timeCat":"3","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"025_033","label":"SNPs","pAvg":0.00432,"pSD":0.00125,"pScaled":0.00197,"pRank":44,"nSamples":50,"individualID.1":25,"individualID.2":33,"transmission":false,"snpDist":7,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":2819,"infectionDiff":2868,"infectionDiffY":7.85753,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_034","label":"SNPs","pAvg":0.02049,"pSD":0.0054,"pScaled":0.06886,"pRank":6,"nSamples":500,"individualID.1":25,"individualID.2":34,"transmission":false,"snpDist":8,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":1841,"infectionDiff":583,"infectionDiffY":1.59726,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_035","label":"SNPs","pAvg":0.01265,"pSD":0.00585,"pScaled":0.00329,"pRank":31,"nSamples":50,"individualID.1":25,"individualID.2":35,"transmission":false,"snpDist":4,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":2781,"infectionDiff":1666,"infectionDiffY":4.56438,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"025_036","label":"SNPs","pAvg":0.00966,"pSD":0.00285,"pScaled":0.00261,"pRank":43,"nSamples":50,"individualID.1":25,"individualID.2":36,"transmission":false,"snpDist":4,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":2580,"infectionDiff":2476,"infectionDiffY":6.78356,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"025_037","label":"SNPs","pAvg":0.00673,"pSD":0.00171,"pScaled":0.00679,"pRank":31,"nSamples":500,"individualID.1":25,"individualID.2":37,"transmission":false,"snpDist":8,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":2967,"infectionDiff":1998,"infectionDiffY":5.47397,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"025_038","label":"SNPs","pAvg":0.00373,"pSD":0.00178,"pScaled":0.00443,"pRank":34,"nSamples":500,"individualID.1":25,"individualID.2":38,"transmission":false,"snpDist":9,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":2029,"infectionDiff":1643,"infectionDiffY":4.50137,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_039","label":"SNPs","pAvg":0.01289,"pSD":0.00369,"pScaled":0.02781,"pRank":10,"nSamples":500,"individualID.1":25,"individualID.2":39,"transmission":false,"snpDist":10,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":2194,"infectionDiff":1089,"infectionDiffY":2.98356,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_040","label":"SNPs","pAvg":0.00751,"pSD":0.00211,"pScaled":0.00672,"pRank":47,"nSamples":500,"individualID.1":25,"individualID.2":40,"transmission":false,"snpDist":7,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":2603,"infectionDiff":2732,"infectionDiffY":7.48493,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"025_041","label":"SNPs","pAvg":0.01479,"pSD":0.00394,"pScaled":0.03838,"pRank":9,"nSamples":500,"individualID.1":25,"individualID.2":41,"transmission":false,"snpDist":8,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":3452,"infectionDiff":933,"infectionDiffY":2.55616,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_042","label":"SNPs","pAvg":0.03227,"pSD":0.00832,"pScaled":0.01191,"pRank":9,"nSamples":50,"individualID.1":25,"individualID.2":42,"transmission":false,"snpDist":4,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":856,"infectionDiff":584,"infectionDiffY":1.6,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"025_043","label":"SNPs","pAvg":0.04506,"pSD":0.01167,"pScaled":0.06081,"pRank":6,"nSamples":500,"individualID.1":25,"individualID.2":43,"transmission":false,"snpDist":8,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":3578,"infectionDiff":1351,"infectionDiffY":3.70137,"timeCat":"4","Z1":"1","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"025_044","label":"SNPs","pAvg":0.02295,"pSD":0.00768,"pScaled":0.00617,"pRank":14,"nSamples":50,"individualID.1":25,"individualID.2":44,"transmission":false,"snpDist":5,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":1198,"infectionDiff":1252,"infectionDiffY":3.43014,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"025_045","label":"SNPs","pAvg":0.01264,"pSD":0.00336,"pScaled":0.00765,"pRank":21,"nSamples":50,"individualID.1":25,"individualID.2":45,"transmission":false,"snpDist":8,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":2976,"infectionDiff":2243,"infectionDiffY":6.14521,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"025_046","label":"SNPs","pAvg":0.0156,"pSD":0.00551,"pScaled":0.00902,"pRank":16,"nSamples":50,"individualID.1":25,"individualID.2":46,"transmission":false,"snpDist":6,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":1881,"infectionDiff":1197,"infectionDiffY":3.27945,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"025_047","label":"SNPs","pAvg":0.01889,"pSD":0.00503,"pScaled":0.00407,"pRank":23,"nSamples":50,"individualID.1":25,"individualID.2":47,"transmission":false,"snpDist":6,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":1827,"infectionDiff":1929,"infectionDiffY":5.28493,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"025_048","label":"SNPs","pAvg":0.01111,"pSD":0.00453,"pScaled":0.0049,"pRank":20,"nSamples":50,"individualID.1":25,"individualID.2":48,"transmission":false,"snpDist":7,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":2110,"infectionDiff":1463,"infectionDiffY":4.00822,"timeCat":"5","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"025_049","label":"SNPs","pAvg":0.02574,"pSD":0.00614,"pScaled":0.01685,"pRank":12,"nSamples":50,"individualID.1":25,"individualID.2":49,"transmission":false,"snpDist":7,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":1845,"infectionDiff":1081,"infectionDiffY":2.96164,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"025_050","label":"SNPs","pAvg":0.01289,"pSD":0.00369,"pScaled":0.05629,"pRank":6,"nSamples":500,"individualID.1":25,"individualID.2":50,"transmission":false,"snpDist":5,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":1700,"infectionDiff":753,"infectionDiffY":2.06301,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_051","label":"SNPs","pAvg":0.02096,"pSD":0.00982,"pScaled":0.00993,"pRank":21,"nSamples":50,"individualID.1":25,"individualID.2":51,"transmission":false,"snpDist":5,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":1614,"infectionDiff":1720,"infectionDiffY":4.71233,"timeCat":"5","Z1":"1","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"025_052","label":"SNPs","pAvg":0.00381,"pSD":0.00106,"pScaled":0.00143,"pRank":51,"nSamples":50,"individualID.1":25,"individualID.2":52,"transmission":false,"snpDist":6,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":3447,"infectionDiff":2748,"infectionDiffY":7.52877,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_053","label":"SNPs","pAvg":0.00437,"pSD":0.00128,"pScaled":0.00292,"pRank":32,"nSamples":50,"individualID.1":25,"individualID.2":53,"transmission":false,"snpDist":8,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":2134,"infectionDiff":2213,"infectionDiffY":6.06301,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_054","label":"SNPs","pAvg":0.00465,"pSD":0.00134,"pScaled":0.00121,"pRank":47,"nSamples":50,"individualID.1":25,"individualID.2":54,"transmission":false,"snpDist":8,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":3305,"infectionDiff":3137,"infectionDiffY":8.59452,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_055","label":"SNPs","pAvg":0.01492,"pSD":0.00406,"pScaled":0.00458,"pRank":16,"nSamples":50,"individualID.1":25,"individualID.2":55,"transmission":false,"snpDist":8,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":2289,"infectionDiff":2404,"infectionDiffY":6.5863,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"025_056","label":"SNPs","pAvg":0.00394,"pSD":0.00135,"pScaled":0.00094,"pRank":38,"nSamples":50,"individualID.1":25,"individualID.2":56,"transmission":false,"snpDist":8,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":2712,"infectionDiff":2489,"infectionDiffY":6.81918,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_057","label":"SNPs","pAvg":0.00385,"pSD":0.00105,"pScaled":0.00077,"pRank":45,"nSamples":50,"individualID.1":25,"individualID.2":57,"transmission":false,"snpDist":9,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":3275,"infectionDiff":3139,"infectionDiffY":8.6,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_058","label":"SNPs","pAvg":0.00386,"pSD":0.00113,"pScaled":0.00381,"pRank":47,"nSamples":500,"individualID.1":25,"individualID.2":58,"transmission":false,"snpDist":10,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":3560,"infectionDiff":2827,"infectionDiffY":7.74521,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_059","label":"SNPs","pAvg":0.03974,"pSD":0.01212,"pScaled":0.05713,"pRank":3,"nSamples":500,"individualID.1":25,"individualID.2":59,"transmission":false,"snpDist":10,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":2940,"infectionDiff":1291,"infectionDiffY":3.53699,"timeCat":"4","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"025_060","label":"SNPs","pAvg":0.00763,"pSD":0.00205,"pScaled":0.0037,"pRank":48,"nSamples":50,"individualID.1":25,"individualID.2":60,"transmission":false,"snpDist":8,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":3602,"infectionDiff":3469,"infectionDiffY":9.50411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"025_061","label":"SNPs","pAvg":0.00139,"pSD":0.00047,"pScaled":0.00264,"pRank":49,"nSamples":500,"individualID.1":25,"individualID.2":61,"transmission":false,"snpDist":7,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":3395,"infectionDiff":2687,"infectionDiffY":7.36164,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"025_062","label":"SNPs","pAvg":0.01807,"pSD":0.00877,"pScaled":0.00478,"pRank":22,"nSamples":50,"individualID.1":25,"individualID.2":62,"transmission":false,"snpDist":6,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":2130,"infectionDiff":1592,"infectionDiffY":4.36164,"timeCat":"5","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"025_063","label":"SNPs","pAvg":0.00853,"pSD":0.00347,"pScaled":0.0041,"pRank":18,"nSamples":50,"individualID.1":25,"individualID.2":63,"transmission":false,"snpDist":7,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":1561,"infectionDiff":1386,"infectionDiffY":3.79726,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_064","label":"SNPs","pAvg":0.00682,"pSD":0.00153,"pScaled":0.00259,"pRank":18,"nSamples":50,"individualID.1":25,"individualID.2":64,"transmission":false,"snpDist":9,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":2344,"infectionDiff":2368,"infectionDiffY":6.48767,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"025_065","label":"SNPs","pAvg":0.00144,"pSD":0.0005,"pScaled":0.00111,"pRank":42,"nSamples":50,"individualID.1":25,"individualID.2":65,"transmission":false,"snpDist":8,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":2352,"infectionDiff":2302,"infectionDiffY":6.30685,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"025_066","label":"SNPs","pAvg":0.01178,"pSD":0.00318,"pScaled":0.00311,"pRank":20,"nSamples":50,"individualID.1":25,"individualID.2":66,"transmission":false,"snpDist":9,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":2499,"infectionDiff":2448,"infectionDiffY":6.70685,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"025_067","label":"SNPs","pAvg":0.00422,"pSD":0.00136,"pScaled":0.00106,"pRank":64,"nSamples":50,"individualID.1":25,"individualID.2":67,"transmission":false,"snpDist":8,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":3621,"infectionDiff":3533,"infectionDiffY":9.67945,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_068","label":"SNPs","pAvg":0.00983,"pSD":0.00301,"pScaled":0.00215,"pRank":37,"nSamples":50,"individualID.1":25,"individualID.2":68,"transmission":false,"snpDist":5,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":3227,"infectionDiff":3185,"infectionDiffY":8.72603,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"025_069","label":"SNPs","pAvg":0.00147,"pSD":0.00047,"pScaled":0.00047,"pRank":72,"nSamples":50,"individualID.1":25,"individualID.2":69,"transmission":false,"snpDist":6,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":3272,"infectionDiff":3212,"infectionDiffY":8.8,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"025_070","label":"SNPs","pAvg":0.0062,"pSD":0.00284,"pScaled":0.00192,"pRank":33,"nSamples":50,"individualID.1":25,"individualID.2":70,"transmission":false,"snpDist":7,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":1809,"infectionDiff":1630,"infectionDiffY":4.46575,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"025_071","label":"SNPs","pAvg":0.00068,"pSD":0.00219,"pScaled":0.00069,"pRank":44,"nSamples":500,"individualID.1":25,"individualID.2":71,"transmission":false,"snpDist":11,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":3327,"infectionDiff":1888,"infectionDiffY":5.1726,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"025_072","label":"SNPs","pAvg":0.0086,"pSD":0.00431,"pScaled":0.00262,"pRank":23,"nSamples":50,"individualID.1":25,"individualID.2":72,"transmission":false,"snpDist":7,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":1768,"infectionDiff":1807,"infectionDiffY":4.95068,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"025_073","label":"SNPs","pAvg":0.00207,"pSD":0.00063,"pScaled":0.00152,"pRank":34,"nSamples":50,"individualID.1":25,"individualID.2":73,"transmission":false,"snpDist":7,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":2849,"infectionDiff":2558,"infectionDiffY":7.00822,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"025_074","label":"SNPs","pAvg":0.0013,"pSD":0.0005,"pScaled":0.00071,"pRank":39,"nSamples":50,"individualID.1":25,"individualID.2":74,"transmission":false,"snpDist":6,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":2689,"infectionDiff":1939,"infectionDiffY":5.31233,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"025_075","label":"SNPs","pAvg":0.00016,"pSD":0.0005,"pScaled":0.00068,"pRank":87,"nSamples":500,"individualID.1":25,"individualID.2":75,"transmission":false,"snpDist":12,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":3355,"infectionDiff":3512,"infectionDiffY":9.62192,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"025_076","label":"SNPs","pAvg":0.0085,"pSD":0.00252,"pScaled":0.00208,"pRank":39,"nSamples":50,"individualID.1":25,"individualID.2":76,"transmission":false,"snpDist":5,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":3590,"infectionDiff":3185,"infectionDiffY":8.72603,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"025_077","label":"SNPs","pAvg":0.00359,"pSD":0.001,"pScaled":0.00079,"pRank":63,"nSamples":50,"individualID.1":25,"individualID.2":77,"transmission":false,"snpDist":4,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":2743,"infectionDiff":2900,"infectionDiffY":7.94521,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_078","label":"SNPs","pAvg":0.00739,"pSD":0.00198,"pScaled":0.00164,"pRank":65,"nSamples":50,"individualID.1":25,"individualID.2":78,"transmission":false,"snpDist":4,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":3434,"infectionDiff":3213,"infectionDiffY":8.80274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"025_079","label":"SNPs","pAvg":0.00408,"pSD":0.00118,"pScaled":0.00205,"pRank":30,"nSamples":50,"individualID.1":25,"individualID.2":79,"transmission":false,"snpDist":9,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":2842,"infectionDiff":2497,"infectionDiffY":6.8411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_080","label":"SNPs","pAvg":0.0021,"pSD":0.00066,"pScaled":0.01534,"pRank":11,"nSamples":500,"individualID.1":25,"individualID.2":80,"transmission":false,"snpDist":9,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":2851,"infectionDiff":2429,"infectionDiffY":6.65479,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"025_081","label":"SNPs","pAvg":0.00236,"pSD":0.0007,"pScaled":0.00059,"pRank":68,"nSamples":50,"individualID.1":25,"individualID.2":81,"transmission":false,"snpDist":4,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":3567,"infectionDiff":3596,"infectionDiffY":9.85205,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"025_082","label":"SNPs","pAvg":0.00631,"pSD":0.00204,"pScaled":0.00137,"pRank":58,"nSamples":50,"individualID.1":25,"individualID.2":82,"transmission":false,"snpDist":6,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":3571,"infectionDiff":3673,"infectionDiffY":10.06301,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"025_083","label":"SNPs","pAvg":0.01023,"pSD":0.00277,"pScaled":0.00398,"pRank":31,"nSamples":50,"individualID.1":25,"individualID.2":83,"transmission":false,"snpDist":6,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":3347,"infectionDiff":3143,"infectionDiffY":8.61096,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"025_084","label":"SNPs","pAvg":0.00041,"pSD":0.00129,"pScaled":0.00021,"pRank":66,"nSamples":500,"individualID.1":25,"individualID.2":84,"transmission":false,"snpDist":11,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":3590,"infectionDiff":3191,"infectionDiffY":8.74247,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"025_085","label":"SNPs","pAvg":0.00462,"pSD":0.00113,"pScaled":0.00158,"pRank":16,"nSamples":50,"individualID.1":25,"individualID.2":85,"transmission":false,"snpDist":9,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":2702,"infectionDiff":2856,"infectionDiffY":7.82466,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_086","label":"SNPs","pAvg":0.00144,"pSD":0.00041,"pScaled":0.00046,"pRank":48,"nSamples":50,"individualID.1":25,"individualID.2":86,"transmission":false,"snpDist":6,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":2540,"infectionDiff":2484,"infectionDiffY":6.80548,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"025_087","label":"SNPs","pAvg":0.00222,"pSD":0.00074,"pScaled":0.00181,"pRank":26,"nSamples":50,"individualID.1":25,"individualID.2":87,"transmission":false,"snpDist":10,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":3075,"infectionDiff":3023,"infectionDiffY":8.28219,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"025_088","label":"SNPs","pAvg":0.00737,"pSD":0.00238,"pScaled":0.00143,"pRank":49,"nSamples":50,"individualID.1":25,"individualID.2":88,"transmission":false,"snpDist":5,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":3184,"infectionDiff":3358,"infectionDiffY":9.2,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"025_089","label":"SNPs","pAvg":0.00478,"pSD":0.00124,"pScaled":0.00153,"pRank":17,"nSamples":50,"individualID.1":25,"individualID.2":89,"transmission":false,"snpDist":10,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":3476,"infectionDiff":3195,"infectionDiffY":8.75342,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_090","label":"SNPs","pAvg":0.00047,"pSD":0.00146,"pScaled":0.00012,"pRank":81,"nSamples":500,"individualID.1":25,"individualID.2":90,"transmission":false,"snpDist":11,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":3547,"infectionDiff":3421,"infectionDiffY":9.3726,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"025_091","label":"SNPs","pAvg":0.00818,"pSD":0.00235,"pScaled":0.0041,"pRank":15,"nSamples":50,"individualID.1":25,"individualID.2":91,"transmission":false,"snpDist":10,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":3568,"infectionDiff":3012,"infectionDiffY":8.25205,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"025_092","label":"SNPs","pAvg":0.00405,"pSD":0.00114,"pScaled":0.00164,"pRank":19,"nSamples":50,"individualID.1":25,"individualID.2":92,"transmission":false,"snpDist":10,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":3615,"infectionDiff":3163,"infectionDiffY":8.66575,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_093","label":"SNPs","pAvg":0.00075,"pSD":0.00236,"pScaled":0.00021,"pRank":57,"nSamples":500,"individualID.1":25,"individualID.2":93,"transmission":false,"snpDist":11,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":3452,"infectionDiff":3389,"infectionDiffY":9.28493,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"025_094","label":"SNPs","pAvg":0.00142,"pSD":0.00044,"pScaled":0.00047,"pRank":69,"nSamples":50,"individualID.1":25,"individualID.2":94,"transmission":false,"snpDist":10,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":3498,"infectionDiff":3661,"infectionDiffY":10.03014,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"025_095","label":"SNPs","pAvg":0.00218,"pSD":0.00078,"pScaled":0.00111,"pRank":27,"nSamples":50,"individualID.1":25,"individualID.2":95,"transmission":false,"snpDist":10,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":3080,"infectionDiff":3092,"infectionDiffY":8.47123,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"025_096","label":"SNPs","pAvg":0.00145,"pSD":0.0005,"pScaled":0.00051,"pRank":62,"nSamples":50,"individualID.1":25,"individualID.2":96,"transmission":false,"snpDist":10,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":3175,"infectionDiff":3324,"infectionDiffY":9.10685,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"025_097","label":"SNPs","pAvg":0.00805,"pSD":0.00217,"pScaled":0.0018,"pRank":34,"nSamples":50,"individualID.1":25,"individualID.2":97,"transmission":false,"snpDist":10,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":3418,"infectionDiff":3481,"infectionDiffY":9.53699,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"025_098","label":"SNPs","pAvg":0.00455,"pSD":0.00134,"pScaled":0.00129,"pRank":21,"nSamples":50,"individualID.1":25,"individualID.2":98,"transmission":false,"snpDist":10,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":3237,"infectionDiff":3253,"infectionDiffY":8.91233,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"025_099","label":"SNPs","pAvg":0.00129,"pSD":0.0004,"pScaled":0.00044,"pRank":54,"nSamples":50,"individualID.1":25,"individualID.2":99,"transmission":false,"snpDist":7,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":3219,"infectionDiff":3117,"infectionDiffY":8.53973,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"025_100","label":"SNPs","pAvg":0.00755,"pSD":0.0021,"pScaled":0.00222,"pRank":53,"nSamples":50,"individualID.1":25,"individualID.2":100,"transmission":false,"snpDist":7,"infectionDate.1":"1989-07-09 14:49:21","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1990-01-24 23:05:50","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":3419,"infectionDiff":3495,"infectionDiffY":9.57534,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"026_023","label":"SNPs","pAvg":0.04486,"pSD":0.00975,"pScaled":0.01997,"pRank":8,"nSamples":50,"individualID.1":26,"individualID.2":23,"transmission":false,"snpDist":9,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":396,"infectionDiff":703,"infectionDiffY":1.92603,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"026_027","label":"SNPs","pAvg":0.85077,"pSD":0.34736,"pScaled":0.30374,"pRank":1,"nSamples":320,"individualID.1":26,"individualID.2":27,"transmission":false,"snpDist":1,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":173,"infectionDiff":589,"infectionDiffY":1.6137,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"026_033","label":"SNPs","pAvg":0.04568,"pSD":0.00924,"pScaled":0.02083,"pRank":3,"nSamples":50,"individualID.1":26,"individualID.2":33,"transmission":false,"snpDist":10,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":-383,"infectionDiff":271,"infectionDiffY":0.74247,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"026_040","label":"SNPs","pAvg":0.0507,"pSD":0.00955,"pScaled":0.04535,"pRank":5,"nSamples":500,"individualID.1":26,"individualID.2":40,"transmission":false,"snpDist":10,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":-599,"infectionDiff":135,"infectionDiffY":0.36986,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"026_052","label":"SNPs","pAvg":0.09615,"pSD":0.0163,"pScaled":0.03607,"pRank":3,"nSamples":50,"individualID.1":26,"individualID.2":52,"transmission":false,"snpDist":9,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":245,"infectionDiff":151,"infectionDiffY":0.4137,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"026_054","label":"SNPs","pAvg":0.00344,"pSD":0.01064,"pScaled":0.0009,"pRank":57,"nSamples":500,"individualID.1":26,"individualID.2":54,"transmission":false,"snpDist":11,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":103,"infectionDiff":540,"infectionDiffY":1.47945,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"026_057","label":"SNPs","pAvg":0.00781,"pSD":0.02412,"pScaled":0.00156,"pRank":33,"nSamples":500,"individualID.1":26,"individualID.2":57,"transmission":false,"snpDist":12,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":74,"infectionDiff":542,"infectionDiffY":1.48493,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"026_058","label":"SNPs","pAvg":0.00935,"pSD":0.02838,"pScaled":0.00923,"pRank":31,"nSamples":500,"individualID.1":26,"individualID.2":58,"transmission":false,"snpDist":13,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":359,"infectionDiff":231,"infectionDiffY":0.63288,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"026_060","label":"SNPs","pAvg":0.00281,"pSD":0.00888,"pScaled":0.00136,"pRank":63,"nSamples":500,"individualID.1":26,"individualID.2":60,"transmission":false,"snpDist":11,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":400,"infectionDiff":872,"infectionDiffY":2.38904,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"026_061","label":"SNPs","pAvg":0.03088,"pSD":0.00639,"pScaled":0.05863,"pRank":5,"nSamples":500,"individualID.1":26,"individualID.2":61,"transmission":false,"snpDist":10,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":193,"infectionDiff":90,"infectionDiffY":0.24658,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"026_067","label":"SNPs","pAvg":0.00552,"pSD":0.01735,"pScaled":0.00139,"pRank":53,"nSamples":500,"individualID.1":26,"individualID.2":67,"transmission":false,"snpDist":13,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":419,"infectionDiff":936,"infectionDiffY":2.56438,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"026_068","label":"SNPs","pAvg":0.0257,"pSD":0.00632,"pScaled":0.00561,"pRank":19,"nSamples":50,"individualID.1":26,"individualID.2":68,"transmission":false,"snpDist":8,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":25,"infectionDiff":588,"infectionDiffY":1.61096,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"026_069","label":"SNPs","pAvg":0.02116,"pSD":0.00423,"pScaled":0.00679,"pRank":16,"nSamples":50,"individualID.1":26,"individualID.2":69,"transmission":false,"snpDist":9,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":70,"infectionDiff":615,"infectionDiffY":1.68493,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"026_075","label":"SNPs","pAvg":0.00104,"pSD":0.00332,"pScaled":0.00453,"pRank":36,"nSamples":500,"individualID.1":26,"individualID.2":75,"transmission":false,"snpDist":14,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":154,"infectionDiff":915,"infectionDiffY":2.50685,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"026_076","label":"SNPs","pAvg":0.03589,"pSD":0.00916,"pScaled":0.0088,"pRank":10,"nSamples":50,"individualID.1":26,"individualID.2":76,"transmission":false,"snpDist":8,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":388,"infectionDiff":588,"infectionDiffY":1.61096,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"026_077","label":"SNPs","pAvg":0.05254,"pSD":0.00922,"pScaled":0.01162,"pRank":8,"nSamples":50,"individualID.1":26,"individualID.2":77,"transmission":false,"snpDist":7,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":-459,"infectionDiff":303,"infectionDiffY":0.83014,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"026_078","label":"SNPs","pAvg":0.04126,"pSD":0.0085,"pScaled":0.00914,"pRank":11,"nSamples":50,"individualID.1":26,"individualID.2":78,"transmission":false,"snpDist":7,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":232,"infectionDiff":616,"infectionDiffY":1.68767,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"026_081","label":"SNPs","pAvg":0.01139,"pSD":0.00409,"pScaled":0.00284,"pRank":17,"nSamples":50,"individualID.1":26,"individualID.2":81,"transmission":false,"snpDist":7,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":365,"infectionDiff":999,"infectionDiffY":2.73699,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"026_082","label":"SNPs","pAvg":0.01804,"pSD":0.00622,"pScaled":0.00393,"pRank":20,"nSamples":50,"individualID.1":26,"individualID.2":82,"transmission":false,"snpDist":9,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":369,"infectionDiff":1076,"infectionDiffY":2.94795,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"026_083","label":"SNPs","pAvg":0.02642,"pSD":0.00613,"pScaled":0.01028,"pRank":10,"nSamples":50,"individualID.1":26,"individualID.2":83,"transmission":false,"snpDist":9,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":145,"infectionDiff":546,"infectionDiffY":1.49589,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"026_084","label":"SNPs","pAvg":0.00089,"pSD":0.00275,"pScaled":0.00045,"pRank":46,"nSamples":500,"individualID.1":26,"individualID.2":84,"transmission":false,"snpDist":14,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":388,"infectionDiff":594,"infectionDiffY":1.6274,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"026_085","label":"SNPs","pAvg":0.00094,"pSD":0.00292,"pScaled":0.00032,"pRank":45,"nSamples":500,"individualID.1":26,"individualID.2":85,"transmission":false,"snpDist":12,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":-500,"infectionDiff":259,"infectionDiffY":0.70959,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"026_087","label":"SNPs","pAvg":0.00258,"pSD":0.00803,"pScaled":0.0021,"pRank":22,"nSamples":500,"individualID.1":26,"individualID.2":87,"transmission":false,"snpDist":13,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":-127,"infectionDiff":426,"infectionDiffY":1.16712,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"026_088","label":"SNPs","pAvg":0.01585,"pSD":0.00491,"pScaled":0.00307,"pRank":22,"nSamples":50,"individualID.1":26,"individualID.2":88,"transmission":false,"snpDist":8,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-18,"infectionDiff":761,"infectionDiffY":2.08493,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"026_089","label":"SNPs","pAvg":0.00078,"pSD":0.00243,"pScaled":0.00025,"pRank":53,"nSamples":500,"individualID.1":26,"individualID.2":89,"transmission":false,"snpDist":13,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":274,"infectionDiff":598,"infectionDiffY":1.63836,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"026_090","label":"SNPs","pAvg":0.00058,"pSD":0.00183,"pScaled":0.00015,"pRank":73,"nSamples":500,"individualID.1":26,"individualID.2":90,"transmission":false,"snpDist":14,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":345,"infectionDiff":824,"infectionDiffY":2.25753,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"026_091","label":"SNPs","pAvg":0.00201,"pSD":0.00617,"pScaled":0.00101,"pRank":37,"nSamples":500,"individualID.1":26,"individualID.2":91,"transmission":false,"snpDist":13,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":366,"infectionDiff":415,"infectionDiffY":1.13699,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"026_092","label":"SNPs","pAvg":0.00086,"pSD":0.00269,"pScaled":0.00035,"pRank":48,"nSamples":500,"individualID.1":26,"individualID.2":92,"transmission":false,"snpDist":13,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":413,"infectionDiff":566,"infectionDiffY":1.55068,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"026_093","label":"SNPs","pAvg":0.00062,"pSD":0.00196,"pScaled":0.00017,"pRank":64,"nSamples":500,"individualID.1":26,"individualID.2":93,"transmission":false,"snpDist":14,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":250,"infectionDiff":792,"infectionDiffY":2.16986,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"026_094","label":"SNPs","pAvg":0.00359,"pSD":0.0113,"pScaled":0.00118,"pRank":48,"nSamples":500,"individualID.1":26,"individualID.2":94,"transmission":false,"snpDist":13,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":296,"infectionDiff":1064,"infectionDiffY":2.91507,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"026_095","label":"SNPs","pAvg":0.00271,"pSD":0.00844,"pScaled":0.00138,"pRank":23,"nSamples":500,"individualID.1":26,"individualID.2":95,"transmission":false,"snpDist":13,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":-122,"infectionDiff":495,"infectionDiffY":1.35616,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"026_096","label":"SNPs","pAvg":0.00244,"pSD":0.00757,"pScaled":0.00085,"pRank":39,"nSamples":500,"individualID.1":26,"individualID.2":96,"transmission":false,"snpDist":13,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-27,"infectionDiff":727,"infectionDiffY":1.99178,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"026_097","label":"SNPs","pAvg":0.00159,"pSD":0.00502,"pScaled":0.00036,"pRank":69,"nSamples":500,"individualID.1":26,"individualID.2":97,"transmission":false,"snpDist":13,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":216,"infectionDiff":884,"infectionDiffY":2.42192,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"026_098","label":"SNPs","pAvg":0.00153,"pSD":0.00482,"pScaled":0.00043,"pRank":43,"nSamples":500,"individualID.1":26,"individualID.2":98,"transmission":false,"snpDist":13,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":35,"infectionDiff":656,"infectionDiffY":1.79726,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"026_099","label":"SNPs","pAvg":0.04751,"pSD":0.01303,"pScaled":0.01623,"pRank":5,"nSamples":50,"individualID.1":26,"individualID.2":99,"transmission":false,"snpDist":10,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":18,"infectionDiff":520,"infectionDiffY":1.42466,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"026_100","label":"SNPs","pAvg":0.02989,"pSD":0.009,"pScaled":0.00881,"pRank":11,"nSamples":50,"individualID.1":26,"individualID.2":100,"transmission":false,"snpDist":10,"infectionDate.1":"1996-08-18 14:02:06","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1998-10-31 19:53:19","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":217,"infectionDiff":898,"infectionDiffY":2.46027,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"027_023","label":"SNPs","pAvg":0.09414,"pSD":0.0169,"pScaled":0.0419,"pRank":3,"nSamples":50,"individualID.1":27,"individualID.2":23,"transmission":false,"infectionDate.1":"1998-03-30 20:42:40","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1999-04-22 10:20:52","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":223,"infectionDiff":114,"infectionDiffY":0.31233,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"027_060","label":"SNPs","pAvg":0.08473,"pSD":0.01518,"pScaled":0.04105,"pRank":3,"nSamples":50,"individualID.1":27,"individualID.2":60,"transmission":false,"snpDist":10,"infectionDate.1":"1998-03-30 20:42:40","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-04-22 10:20:52","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":227,"infectionDiff":283,"infectionDiffY":0.77534,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"027_067","label":"SNPs","pAvg":0.05967,"pSD":0.01203,"pScaled":0.01506,"pRank":6,"nSamples":50,"individualID.1":27,"individualID.2":67,"transmission":false,"infectionDate.1":"1998-03-30 20:42:40","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-04-22 10:20:52","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":247,"infectionDiff":347,"infectionDiffY":0.95068,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"027_069","label":"SNPs","pAvg":0.00905,"pSD":0.00199,"pScaled":0.0029,"pRank":23,"nSamples":50,"individualID.1":27,"individualID.2":69,"transmission":false,"infectionDate.1":"1998-03-30 20:42:40","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1999-04-22 10:20:52","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":-103,"infectionDiff":26,"infectionDiffY":0.07123,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"027_075","label":"SNPs","pAvg":0.00183,"pSD":0.00561,"pScaled":0.00794,"pRank":29,"nSamples":500,"individualID.1":27,"individualID.2":75,"transmission":false,"snpDist":13,"infectionDate.1":"1998-03-30 20:42:40","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-04-22 10:20:52","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-19,"infectionDiff":326,"infectionDiffY":0.89315,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"027_078","label":"SNPs","pAvg":0.08579,"pSD":0.01532,"pScaled":0.019,"pRank":6,"nSamples":50,"individualID.1":27,"individualID.2":78,"transmission":false,"infectionDate.1":"1998-03-30 20:42:40","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1999-04-22 10:20:52","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":59,"infectionDiff":27,"infectionDiffY":0.07397,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"027_081","label":"SNPs","pAvg":0.0152,"pSD":0.00439,"pScaled":0.00378,"pRank":13,"nSamples":50,"individualID.1":27,"individualID.2":81,"transmission":false,"infectionDate.1":"1998-03-30 20:42:40","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-04-22 10:20:52","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":193,"infectionDiff":410,"infectionDiffY":1.12329,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"027_082","label":"SNPs","pAvg":0.04177,"pSD":0.01046,"pScaled":0.00909,"pRank":10,"nSamples":50,"individualID.1":27,"individualID.2":82,"transmission":false,"snpDist":8,"infectionDate.1":"1998-03-30 20:42:40","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-04-22 10:20:52","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":197,"infectionDiff":487,"infectionDiffY":1.33425,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"027_084","label":"SNPs","pAvg":0.00324,"pSD":0.00994,"pScaled":0.00163,"pRank":21,"nSamples":500,"individualID.1":27,"individualID.2":84,"transmission":false,"snpDist":13,"infectionDate.1":"1998-03-30 20:42:40","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1999-04-22 10:20:52","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":216,"infectionDiff":5,"infectionDiffY":0.0137,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"027_088","label":"SNPs","pAvg":0.04604,"pSD":0.00983,"pScaled":0.00891,"pRank":10,"nSamples":50,"individualID.1":27,"individualID.2":88,"transmission":false,"snpDist":7,"infectionDate.1":"1998-03-30 20:42:40","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-04-22 10:20:52","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-190,"infectionDiff":172,"infectionDiffY":0.47123,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"027_089","label":"SNPs","pAvg":0.00269,"pSD":0.00827,"pScaled":0.00086,"pRank":24,"nSamples":500,"individualID.1":27,"individualID.2":89,"transmission":false,"snpDist":12,"infectionDate.1":"1998-03-30 20:42:40","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1999-04-22 10:20:52","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":102,"infectionDiff":8,"infectionDiffY":0.02192,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"027_090","label":"SNPs","pAvg":0.0271,"pSD":0.00499,"pScaled":0.00703,"pRank":11,"nSamples":50,"individualID.1":27,"individualID.2":90,"transmission":false,"infectionDate.1":"1998-03-30 20:42:40","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-04-22 10:20:52","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":172,"infectionDiff":235,"infectionDiffY":0.64384,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"027_093","label":"SNPs","pAvg":0.00294,"pSD":0.00906,"pScaled":0.0008,"pRank":28,"nSamples":500,"individualID.1":27,"individualID.2":93,"transmission":false,"snpDist":13,"infectionDate.1":"1998-03-30 20:42:40","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-04-22 10:20:52","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":77,"infectionDiff":203,"infectionDiffY":0.55616,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"027_094","label":"SNPs","pAvg":0.01806,"pSD":0.00469,"pScaled":0.00595,"pRank":14,"nSamples":50,"individualID.1":27,"individualID.2":94,"transmission":false,"infectionDate.1":"1998-03-30 20:42:40","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-04-22 10:20:52","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":123,"infectionDiff":474,"infectionDiffY":1.29863,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"027_096","label":"SNPs","pAvg":0.01148,"pSD":0.00245,"pScaled":0.00402,"pRank":16,"nSamples":50,"individualID.1":27,"individualID.2":96,"transmission":false,"infectionDate.1":"1998-03-30 20:42:40","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-04-22 10:20:52","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-200,"infectionDiff":138,"infectionDiffY":0.37808,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"027_097","label":"SNPs","pAvg":0.04667,"pSD":0.00948,"pScaled":0.01046,"pRank":11,"nSamples":50,"individualID.1":27,"individualID.2":97,"transmission":false,"infectionDate.1":"1998-03-30 20:42:40","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-04-22 10:20:52","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":43,"infectionDiff":294,"infectionDiffY":0.80548,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"027_098","label":"SNPs","pAvg":0.00521,"pSD":0.0159,"pScaled":0.00148,"pRank":19,"nSamples":500,"individualID.1":27,"individualID.2":98,"transmission":false,"snpDist":12,"infectionDate.1":"1998-03-30 20:42:40","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1999-04-22 10:20:52","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":-138,"infectionDiff":67,"infectionDiffY":0.18356,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"027_100","label":"SNPs","pAvg":0.03218,"pSD":0.00666,"pScaled":0.00948,"pRank":9,"nSamples":50,"individualID.1":27,"individualID.2":100,"transmission":false,"infectionDate.1":"1998-03-30 20:42:40","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-04-22 10:20:52","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":44,"infectionDiff":309,"infectionDiffY":0.84658,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"028_023","label":"SNPs","pAvg":0.04441,"pSD":0.01292,"pScaled":0.01977,"pRank":11,"nSamples":50,"individualID.1":28,"individualID.2":23,"transmission":false,"snpDist":8,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1007,"infectionDiff":1289,"infectionDiffY":3.53151,"timeCat":"4","Z1":"1","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"028_026","label":"SNPs","pAvg":0.03496,"pSD":0.0099,"pScaled":0.01228,"pRank":5,"nSamples":50,"individualID.1":28,"individualID.2":26,"transmission":false,"snpDist":3,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":611,"infectionDiff":586,"infectionDiffY":1.60548,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"028_027","label":"SNPs","pAvg":0.78815,"pSD":0.40285,"pScaled":0.28139,"pRank":2,"nSamples":230,"individualID.1":28,"individualID.2":27,"transmission":false,"snpDist":2,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":783,"infectionDiff":1175,"infectionDiffY":3.21918,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":true} {"pairID":"028_033","label":"SNPs","pAvg":0.01507,"pSD":0.00413,"pScaled":0.00687,"pRank":10,"nSamples":50,"individualID.1":28,"individualID.2":33,"transmission":false,"snpDist":9,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":228,"infectionDiff":857,"infectionDiffY":2.34795,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"028_036","label":"SNPs","pAvg":0.08595,"pSD":0.02297,"pScaled":0.02325,"pRank":5,"nSamples":50,"individualID.1":28,"individualID.2":36,"transmission":false,"snpDist":6,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":-11,"infectionDiff":465,"infectionDiffY":1.27397,"timeCat":"2","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"028_040","label":"SNPs","pAvg":0.06455,"pSD":0.01768,"pScaled":0.05774,"pRank":3,"nSamples":500,"individualID.1":28,"individualID.2":40,"transmission":false,"snpDist":9,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":12,"infectionDiff":721,"infectionDiffY":1.97534,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"028_045","label":"SNPs","pAvg":0.03754,"pSD":0.0083,"pScaled":0.02272,"pRank":8,"nSamples":50,"individualID.1":28,"individualID.2":45,"transmission":false,"snpDist":10,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":385,"infectionDiff":232,"infectionDiffY":0.63562,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"028_052","label":"SNPs","pAvg":0.02364,"pSD":0.00782,"pScaled":0.00887,"pRank":15,"nSamples":50,"individualID.1":28,"individualID.2":52,"transmission":false,"snpDist":8,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":856,"infectionDiff":737,"infectionDiffY":2.01918,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"028_053","label":"SNPs","pAvg":0.04784,"pSD":0.01502,"pScaled":0.03195,"pRank":3,"nSamples":50,"individualID.1":28,"individualID.2":53,"transmission":false,"snpDist":10,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":-457,"infectionDiff":202,"infectionDiffY":0.55342,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"028_054","label":"SNPs","pAvg":0.01,"pSD":0.00351,"pScaled":0.0026,"pRank":18,"nSamples":50,"individualID.1":28,"individualID.2":54,"transmission":false,"snpDist":10,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":714,"infectionDiff":1126,"infectionDiffY":3.08493,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"028_055","label":"SNPs","pAvg":0.03356,"pSD":0.00814,"pScaled":0.01031,"pRank":7,"nSamples":50,"individualID.1":28,"individualID.2":55,"transmission":false,"snpDist":10,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":-303,"infectionDiff":394,"infectionDiffY":1.07945,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"028_056","label":"SNPs","pAvg":0.03328,"pSD":0.00878,"pScaled":0.00795,"pRank":11,"nSamples":50,"individualID.1":28,"individualID.2":56,"transmission":false,"snpDist":10,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":121,"infectionDiff":478,"infectionDiffY":1.30959,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"028_057","label":"SNPs","pAvg":0.00159,"pSD":0.00508,"pScaled":0.00032,"pRank":53,"nSamples":500,"individualID.1":28,"individualID.2":57,"transmission":false,"snpDist":11,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":684,"infectionDiff":1128,"infectionDiffY":3.09041,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"028_058","label":"SNPs","pAvg":0.00254,"pSD":0.00806,"pScaled":0.0025,"pRank":49,"nSamples":500,"individualID.1":28,"individualID.2":58,"transmission":false,"snpDist":12,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":969,"infectionDiff":817,"infectionDiffY":2.23836,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"028_060","label":"SNPs","pAvg":0.03082,"pSD":0.0091,"pScaled":0.01493,"pRank":14,"nSamples":50,"individualID.1":28,"individualID.2":60,"transmission":false,"snpDist":10,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1011,"infectionDiff":1459,"infectionDiffY":3.99726,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"028_061","label":"SNPs","pAvg":0.0064,"pSD":0.00183,"pScaled":0.01215,"pRank":15,"nSamples":500,"individualID.1":28,"individualID.2":61,"transmission":false,"snpDist":9,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":804,"infectionDiff":676,"infectionDiffY":1.85205,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"028_064","label":"SNPs","pAvg":0.00386,"pSD":0.01189,"pScaled":0.00147,"pRank":31,"nSamples":500,"individualID.1":28,"individualID.2":64,"transmission":false,"snpDist":11,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":-247,"infectionDiff":357,"infectionDiffY":0.97808,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"028_065","label":"SNPs","pAvg":0.01594,"pSD":0.00492,"pScaled":0.0123,"pRank":10,"nSamples":50,"individualID.1":28,"individualID.2":65,"transmission":false,"snpDist":10,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":-239,"infectionDiff":291,"infectionDiffY":0.79726,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"028_066","label":"SNPs","pAvg":0.00967,"pSD":0.03023,"pScaled":0.00255,"pRank":23,"nSamples":500,"individualID.1":28,"individualID.2":66,"transmission":false,"snpDist":11,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":-92,"infectionDiff":437,"infectionDiffY":1.19726,"timeCat":"2","Z1":"1","Z2":"1","Z3":"2","Z4":"1","snpClose":false} {"pairID":"028_067","label":"SNPs","pAvg":0.00079,"pSD":0.00269,"pScaled":0.0002,"pRank":84,"nSamples":500,"individualID.1":28,"individualID.2":67,"transmission":false,"snpDist":12,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1030,"infectionDiff":1523,"infectionDiffY":4.1726,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"028_068","label":"SNPs","pAvg":0.02233,"pSD":0.00791,"pScaled":0.00488,"pRank":23,"nSamples":50,"individualID.1":28,"individualID.2":68,"transmission":false,"snpDist":7,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":636,"infectionDiff":1174,"infectionDiffY":3.21644,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"028_069","label":"SNPs","pAvg":0.00326,"pSD":0.00135,"pScaled":0.00105,"pRank":47,"nSamples":50,"individualID.1":28,"individualID.2":69,"transmission":false,"snpDist":8,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":681,"infectionDiff":1201,"infectionDiffY":3.29041,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"028_073","label":"SNPs","pAvg":0.0192,"pSD":0.00591,"pScaled":0.01414,"pRank":10,"nSamples":50,"individualID.1":28,"individualID.2":73,"transmission":false,"snpDist":9,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":258,"infectionDiff":548,"infectionDiffY":1.50137,"timeCat":"2","Z1":"1","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"028_075","label":"SNPs","pAvg":0.00029,"pSD":0.00099,"pScaled":0.00128,"pRank":69,"nSamples":500,"individualID.1":28,"individualID.2":75,"transmission":false,"snpDist":14,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":764,"infectionDiff":1501,"infectionDiffY":4.11233,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"028_076","label":"SNPs","pAvg":0.00944,"pSD":0.0037,"pScaled":0.00231,"pRank":37,"nSamples":50,"individualID.1":28,"individualID.2":76,"transmission":false,"snpDist":7,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":999,"infectionDiff":1174,"infectionDiffY":3.21644,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"028_077","label":"SNPs","pAvg":0.01303,"pSD":0.00377,"pScaled":0.00288,"pRank":26,"nSamples":50,"individualID.1":28,"individualID.2":77,"transmission":false,"snpDist":6,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":152,"infectionDiff":889,"infectionDiffY":2.43562,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"028_078","label":"SNPs","pAvg":0.03195,"pSD":0.00902,"pScaled":0.00707,"pRank":17,"nSamples":50,"individualID.1":28,"individualID.2":78,"transmission":false,"snpDist":6,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":843,"infectionDiff":1202,"infectionDiffY":3.29315,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"028_079","label":"SNPs","pAvg":0.00181,"pSD":0.0056,"pScaled":0.00091,"pRank":42,"nSamples":500,"individualID.1":28,"individualID.2":79,"transmission":false,"snpDist":11,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":251,"infectionDiff":486,"infectionDiffY":1.33151,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"028_080","label":"SNPs","pAvg":0.001,"pSD":0.00316,"pScaled":0.00734,"pRank":30,"nSamples":500,"individualID.1":28,"individualID.2":80,"transmission":false,"snpDist":11,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":260,"infectionDiff":418,"infectionDiffY":1.14521,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"028_081","label":"SNPs","pAvg":0.00462,"pSD":0.00205,"pScaled":0.00115,"pRank":42,"nSamples":50,"individualID.1":28,"individualID.2":81,"transmission":false,"snpDist":6,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":976,"infectionDiff":1585,"infectionDiffY":4.34247,"timeCat":"5","Z1":"1","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"028_082","label":"SNPs","pAvg":0.0065,"pSD":0.00292,"pScaled":0.00141,"pRank":57,"nSamples":50,"individualID.1":28,"individualID.2":82,"transmission":false,"snpDist":8,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":980,"infectionDiff":1662,"infectionDiffY":4.55342,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"028_083","label":"SNPs","pAvg":0.02298,"pSD":0.00733,"pScaled":0.00894,"pRank":15,"nSamples":50,"individualID.1":28,"individualID.2":83,"transmission":false,"snpDist":8,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":756,"infectionDiff":1132,"infectionDiffY":3.10137,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"028_084","label":"SNPs","pAvg":0.00089,"pSD":0.00291,"pScaled":0.00045,"pRank":45,"nSamples":500,"individualID.1":28,"individualID.2":84,"transmission":false,"snpDist":13,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":999,"infectionDiff":1180,"infectionDiffY":3.23288,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"028_085","label":"SNPs","pAvg":0.00154,"pSD":0.00477,"pScaled":0.00053,"pRank":36,"nSamples":500,"individualID.1":28,"individualID.2":85,"transmission":false,"snpDist":11,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":111,"infectionDiff":845,"infectionDiffY":2.31507,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"028_086","label":"SNPs","pAvg":0.00658,"pSD":0.00167,"pScaled":0.0021,"pRank":16,"nSamples":50,"individualID.1":28,"individualID.2":86,"transmission":false,"snpDist":8,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":-51,"infectionDiff":473,"infectionDiffY":1.29589,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"028_087","label":"SNPs","pAvg":0.00075,"pSD":0.00244,"pScaled":0.00061,"pRank":45,"nSamples":500,"individualID.1":28,"individualID.2":87,"transmission":false,"snpDist":12,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":484,"infectionDiff":1013,"infectionDiffY":2.77534,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"028_088","label":"SNPs","pAvg":0.01579,"pSD":0.00485,"pScaled":0.00306,"pRank":24,"nSamples":50,"individualID.1":28,"individualID.2":88,"transmission":false,"snpDist":7,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":593,"infectionDiff":1347,"infectionDiffY":3.69041,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"028_089","label":"SNPs","pAvg":0.00101,"pSD":0.00322,"pScaled":0.00032,"pRank":46,"nSamples":500,"individualID.1":28,"individualID.2":89,"transmission":false,"snpDist":12,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":885,"infectionDiff":1184,"infectionDiffY":3.24384,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"028_090","label":"SNPs","pAvg":0.001,"pSD":0.00321,"pScaled":0.00026,"pRank":68,"nSamples":500,"individualID.1":28,"individualID.2":90,"transmission":false,"snpDist":13,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":956,"infectionDiff":1410,"infectionDiffY":3.86301,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"028_091","label":"SNPs","pAvg":0.00265,"pSD":0.00819,"pScaled":0.00133,"pRank":33,"nSamples":500,"individualID.1":28,"individualID.2":91,"transmission":false,"snpDist":12,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":977,"infectionDiff":1001,"infectionDiffY":2.74247,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"028_092","label":"SNPs","pAvg":0.00089,"pSD":0.00284,"pScaled":0.00036,"pRank":46,"nSamples":500,"individualID.1":28,"individualID.2":92,"transmission":false,"snpDist":12,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1024,"infectionDiff":1152,"infectionDiffY":3.15616,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"028_093","label":"SNPs","pAvg":0.0016,"pSD":0.00505,"pScaled":0.00043,"pRank":44,"nSamples":500,"individualID.1":28,"individualID.2":93,"transmission":false,"snpDist":13,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":861,"infectionDiff":1378,"infectionDiffY":3.77534,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"028_094","label":"SNPs","pAvg":0.00028,"pSD":0.00097,"pScaled":0.00009,"pRank":93,"nSamples":500,"individualID.1":28,"individualID.2":94,"transmission":false,"snpDist":12,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":907,"infectionDiff":1650,"infectionDiffY":4.52055,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"028_095","label":"SNPs","pAvg":0.00073,"pSD":0.00242,"pScaled":0.00037,"pRank":45,"nSamples":500,"individualID.1":28,"individualID.2":95,"transmission":false,"snpDist":12,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":489,"infectionDiff":1082,"infectionDiffY":2.96438,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"028_096","label":"SNPs","pAvg":0.00032,"pSD":0.00105,"pScaled":0.00011,"pRank":79,"nSamples":500,"individualID.1":28,"individualID.2":96,"transmission":false,"snpDist":12,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":584,"infectionDiff":1313,"infectionDiffY":3.59726,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"028_097","label":"SNPs","pAvg":0.00076,"pSD":0.00254,"pScaled":0.00017,"pRank":84,"nSamples":500,"individualID.1":28,"individualID.2":97,"transmission":false,"snpDist":12,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":827,"infectionDiff":1470,"infectionDiffY":4.0274,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"028_098","label":"SNPs","pAvg":0.00193,"pSD":0.00611,"pScaled":0.00055,"pRank":38,"nSamples":500,"individualID.1":28,"individualID.2":98,"transmission":false,"snpDist":12,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":646,"infectionDiff":1243,"infectionDiffY":3.40548,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"028_099","label":"SNPs","pAvg":0.00498,"pSD":0.00186,"pScaled":0.0017,"pRank":31,"nSamples":50,"individualID.1":28,"individualID.2":99,"transmission":false,"snpDist":9,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":628,"infectionDiff":1107,"infectionDiffY":3.03288,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"028_100","label":"SNPs","pAvg":0.00325,"pSD":0.00168,"pScaled":0.00096,"pRank":73,"nSamples":50,"individualID.1":28,"individualID.2":100,"transmission":false,"snpDist":9,"infectionDate.1":"1995-01-10 10:44:18","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1997-02-28 00:00:05","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":828,"infectionDiff":1484,"infectionDiffY":4.06575,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"029_006","label":"SNPs","pAvg":0.04813,"pSD":0.01348,"pScaled":0.03074,"pRank":6,"nSamples":50,"individualID.1":29,"individualID.2":6,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":150,"infectionDiff":542,"infectionDiffY":1.48493,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"029_009","label":"SNPs","pAvg":0.00114,"pSD":0.00353,"pScaled":0.00507,"pRank":35,"nSamples":500,"individualID.1":29,"individualID.2":9,"transmission":false,"snpDist":12,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":2674,"infectionDiff":1225,"infectionDiffY":3.35616,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"029_010","label":"SNPs","pAvg":0.0449,"pSD":0.00985,"pScaled":0.03253,"pRank":2,"nSamples":50,"individualID.1":29,"individualID.2":10,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":125,"infectionDiff":266,"infectionDiffY":0.72877,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"029_014","label":"SNPs","pAvg":0.04831,"pSD":0.01393,"pScaled":0.02654,"pRank":6,"nSamples":50,"individualID.1":29,"individualID.2":14,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":704,"infectionDiff":802,"infectionDiffY":2.19726,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"029_017","label":"SNPs","pAvg":0.06943,"pSD":0.01542,"pScaled":0.09678,"pRank":2,"nSamples":500,"individualID.1":29,"individualID.2":17,"transmission":false,"snpDist":8,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":1842,"infectionDiff":574,"infectionDiffY":1.5726,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"029_018","label":"SNPs","pAvg":0.02944,"pSD":0.009,"pScaled":0.03337,"pRank":11,"nSamples":500,"individualID.1":29,"individualID.2":18,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":597,"infectionDiff":999,"infectionDiffY":2.73699,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"029_021","label":"SNPs","pAvg":0.04857,"pSD":0.01426,"pScaled":0.04636,"pRank":5,"nSamples":500,"individualID.1":29,"individualID.2":21,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":2042,"infectionDiff":996,"infectionDiffY":2.72877,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"029_023","label":"SNPs","pAvg":0.01825,"pSD":0.00414,"pScaled":0.00812,"pRank":20,"nSamples":50,"individualID.1":29,"individualID.2":23,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":2831,"infectionDiff":2764,"infectionDiffY":7.5726,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"029_024","label":"SNPs","pAvg":0.05767,"pSD":0.01325,"pScaled":0.04457,"pRank":2,"nSamples":50,"individualID.1":29,"individualID.2":24,"transmission":false,"snpDist":7,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1991-02-07 21:59:42","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1992-10-05 23:05:30","sampleDiff":218,"infectionDiff":42,"infectionDiffY":0.11507,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"029_026","label":"SNPs","pAvg":0.00846,"pSD":0.00155,"pScaled":0.00297,"pRank":26,"nSamples":50,"individualID.1":29,"individualID.2":26,"transmission":false,"snpDist":7,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":2435,"infectionDiff":2061,"infectionDiffY":5.64658,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"029_027","label":"SNPs","pAvg":0.01519,"pSD":0.00354,"pScaled":0.00542,"pRank":24,"nSamples":50,"individualID.1":29,"individualID.2":27,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":2607,"infectionDiff":2650,"infectionDiffY":7.26027,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"029_028","label":"SNPs","pAvg":0.01779,"pSD":0.00738,"pScaled":0.00497,"pRank":30,"nSamples":50,"individualID.1":29,"individualID.2":28,"transmission":false,"snpDist":6,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":1824,"infectionDiff":1474,"infectionDiffY":4.03836,"timeCat":"5","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"029_030","label":"SNPs","pAvg":0.03572,"pSD":0.00839,"pScaled":0.02497,"pRank":5,"nSamples":50,"individualID.1":29,"individualID.2":30,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":75,"infectionDiff":481,"infectionDiffY":1.31781,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"029_031","label":"SNPs","pAvg":0.10037,"pSD":0.02012,"pScaled":0.16559,"pRank":1,"nSamples":500,"individualID.1":29,"individualID.2":31,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1991-01-03 16:49:07","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1991-07-17 03:37:35","sampleDiff":-229,"infectionDiff":7,"infectionDiffY":0.01918,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"029_032","label":"SNPs","pAvg":0.0335,"pSD":0.00689,"pScaled":0.02284,"pRank":5,"nSamples":50,"individualID.1":29,"individualID.2":32,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":1505,"infectionDiff":427,"infectionDiffY":1.16986,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"029_033","label":"SNPs","pAvg":0.00507,"pSD":0.00129,"pScaled":0.00231,"pRank":34,"nSamples":50,"individualID.1":29,"individualID.2":33,"transmission":false,"snpDist":9,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":2052,"infectionDiff":2332,"infectionDiffY":6.38904,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"029_034","label":"SNPs","pAvg":0.05833,"pSD":0.0121,"pScaled":0.19602,"pRank":1,"nSamples":500,"individualID.1":29,"individualID.2":34,"transmission":true,"snpDist":6,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":1074,"infectionDiff":46,"infectionDiffY":0.12603,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"029_035","label":"SNPs","pAvg":0.67001,"pSD":0.46592,"pScaled":0.1742,"pRank":4,"nSamples":149,"individualID.1":29,"individualID.2":35,"transmission":true,"snpDist":2,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":2014,"infectionDiff":1129,"infectionDiffY":3.09315,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"029_036","label":"SNPs","pAvg":0.01464,"pSD":0.0036,"pScaled":0.00396,"pRank":36,"nSamples":50,"individualID.1":29,"individualID.2":36,"transmission":true,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":1813,"infectionDiff":1940,"infectionDiffY":5.31507,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"029_037","label":"SNPs","pAvg":0.01056,"pSD":0.00474,"pScaled":0.01065,"pRank":24,"nSamples":500,"individualID.1":29,"individualID.2":37,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":2200,"infectionDiff":1462,"infectionDiffY":4.00548,"timeCat":"5","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"029_038","label":"SNPs","pAvg":0.0186,"pSD":0.0053,"pScaled":0.02208,"pRank":14,"nSamples":500,"individualID.1":29,"individualID.2":38,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":1262,"infectionDiff":1107,"infectionDiffY":3.03288,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"029_039","label":"SNPs","pAvg":0.03975,"pSD":0.00869,"pScaled":0.08575,"pRank":3,"nSamples":500,"individualID.1":29,"individualID.2":39,"transmission":false,"snpDist":8,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":1427,"infectionDiff":552,"infectionDiffY":1.51233,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"029_040","label":"SNPs","pAvg":0.01699,"pSD":0.004,"pScaled":0.01519,"pRank":20,"nSamples":500,"individualID.1":29,"individualID.2":40,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":1836,"infectionDiff":2196,"infectionDiffY":6.01644,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"029_041","label":"SNPs","pAvg":0.04616,"pSD":0.01291,"pScaled":0.11983,"pRank":2,"nSamples":500,"individualID.1":29,"individualID.2":41,"transmission":false,"snpDist":6,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":2685,"infectionDiff":396,"infectionDiffY":1.08493,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"029_042","label":"SNPs","pAvg":0.69508,"pSD":0.43058,"pScaled":0.25657,"pRank":3,"nSamples":149,"individualID.1":29,"individualID.2":42,"transmission":false,"snpDist":2,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":89,"infectionDiff":48,"infectionDiffY":0.13151,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"029_043","label":"SNPs","pAvg":0.03104,"pSD":0.00806,"pScaled":0.04189,"pRank":10,"nSamples":500,"individualID.1":29,"individualID.2":43,"transmission":false,"snpDist":10,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":2810,"infectionDiff":815,"infectionDiffY":2.23288,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"029_044","label":"SNPs","pAvg":0.04121,"pSD":0.0079,"pScaled":0.01109,"pRank":9,"nSamples":50,"individualID.1":29,"individualID.2":44,"transmission":false,"snpDist":7,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":431,"infectionDiff":716,"infectionDiffY":1.96164,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"029_045","label":"SNPs","pAvg":0.00575,"pSD":0.00275,"pScaled":0.00348,"pRank":36,"nSamples":50,"individualID.1":29,"individualID.2":45,"transmission":false,"snpDist":10,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":2209,"infectionDiff":1707,"infectionDiffY":4.67671,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"029_046","label":"SNPs","pAvg":0.04579,"pSD":0.01291,"pScaled":0.02649,"pRank":8,"nSamples":50,"individualID.1":29,"individualID.2":46,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":1114,"infectionDiff":661,"infectionDiffY":1.81096,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"029_047","label":"SNPs","pAvg":0.01769,"pSD":0.00545,"pScaled":0.00382,"pRank":25,"nSamples":50,"individualID.1":29,"individualID.2":47,"transmission":false,"snpDist":8,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":1060,"infectionDiff":1392,"infectionDiffY":3.8137,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"029_048","label":"SNPs","pAvg":0.01525,"pSD":0.00408,"pScaled":0.00672,"pRank":16,"nSamples":50,"individualID.1":29,"individualID.2":48,"transmission":false,"snpDist":9,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":1343,"infectionDiff":926,"infectionDiffY":2.53699,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"029_049","label":"SNPs","pAvg":0.07133,"pSD":0.01916,"pScaled":0.04672,"pRank":2,"nSamples":50,"individualID.1":29,"individualID.2":49,"transmission":false,"snpDist":9,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":1078,"infectionDiff":544,"infectionDiffY":1.49041,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"029_050","label":"SNPs","pAvg":0.02681,"pSD":0.00545,"pScaled":0.11706,"pRank":2,"nSamples":500,"individualID.1":29,"individualID.2":50,"transmission":false,"snpDist":3,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":933,"infectionDiff":217,"infectionDiffY":0.59452,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"029_051","label":"SNPs","pAvg":0.01964,"pSD":0.00501,"pScaled":0.0093,"pRank":22,"nSamples":50,"individualID.1":29,"individualID.2":51,"transmission":false,"snpDist":3,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":847,"infectionDiff":1184,"infectionDiffY":3.24384,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"029_052","label":"SNPs","pAvg":0.00887,"pSD":0.002,"pScaled":0.00333,"pRank":36,"nSamples":50,"individualID.1":29,"individualID.2":52,"transmission":false,"snpDist":4,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":2680,"infectionDiff":2212,"infectionDiffY":6.06027,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"029_053","label":"SNPs","pAvg":0.01001,"pSD":0.00447,"pScaled":0.00668,"pRank":18,"nSamples":50,"individualID.1":29,"individualID.2":53,"transmission":false,"snpDist":6,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":1367,"infectionDiff":1676,"infectionDiffY":4.59178,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"029_054","label":"SNPs","pAvg":0.00543,"pSD":0.00143,"pScaled":0.00141,"pRank":36,"nSamples":50,"individualID.1":29,"individualID.2":54,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":2538,"infectionDiff":2600,"infectionDiffY":7.12329,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"029_055","label":"SNPs","pAvg":0.00909,"pSD":0.00254,"pScaled":0.00279,"pRank":20,"nSamples":50,"individualID.1":29,"individualID.2":55,"transmission":false,"snpDist":6,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":1522,"infectionDiff":1868,"infectionDiffY":5.11781,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"029_056","label":"SNPs","pAvg":0.00865,"pSD":0.00152,"pScaled":0.00207,"pRank":25,"nSamples":50,"individualID.1":29,"individualID.2":56,"transmission":false,"snpDist":6,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":1945,"infectionDiff":1952,"infectionDiffY":5.34795,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"029_057","label":"SNPs","pAvg":0.00911,"pSD":0.00171,"pScaled":0.00182,"pRank":28,"nSamples":50,"individualID.1":29,"individualID.2":57,"transmission":false,"snpDist":7,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":2508,"infectionDiff":2603,"infectionDiffY":7.13151,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"029_058","label":"SNPs","pAvg":0.0087,"pSD":0.00172,"pScaled":0.00858,"pRank":33,"nSamples":500,"individualID.1":29,"individualID.2":58,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":2793,"infectionDiff":2291,"infectionDiffY":6.27671,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"029_059","label":"SNPs","pAvg":0.02712,"pSD":0.00759,"pScaled":0.03898,"pRank":11,"nSamples":500,"individualID.1":29,"individualID.2":59,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":2173,"infectionDiff":755,"infectionDiffY":2.06849,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"029_060","label":"SNPs","pAvg":0.01671,"pSD":0.00334,"pScaled":0.0081,"pRank":20,"nSamples":50,"individualID.1":29,"individualID.2":60,"transmission":false,"snpDist":6,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":2835,"infectionDiff":2933,"infectionDiffY":8.03562,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"029_061","label":"SNPs","pAvg":0.00162,"pSD":0.00047,"pScaled":0.00308,"pRank":41,"nSamples":500,"individualID.1":29,"individualID.2":61,"transmission":false,"snpDist":5,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":2628,"infectionDiff":2151,"infectionDiffY":5.89315,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"029_062","label":"SNPs","pAvg":0.02613,"pSD":0.00712,"pScaled":0.00692,"pRank":16,"nSamples":50,"individualID.1":29,"individualID.2":62,"transmission":false,"snpDist":8,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":1363,"infectionDiff":1055,"infectionDiffY":2.89041,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"029_063","label":"SNPs","pAvg":0.02839,"pSD":0.00829,"pScaled":0.01366,"pRank":6,"nSamples":50,"individualID.1":29,"individualID.2":63,"transmission":false,"snpDist":9,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":794,"infectionDiff":850,"infectionDiffY":2.32877,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"029_064","label":"SNPs","pAvg":0.00582,"pSD":0.00136,"pScaled":0.00221,"pRank":22,"nSamples":50,"individualID.1":29,"individualID.2":64,"transmission":false,"snpDist":7,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":1577,"infectionDiff":1832,"infectionDiffY":5.01918,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"029_065","label":"SNPs","pAvg":0.00312,"pSD":0.00156,"pScaled":0.0024,"pRank":28,"nSamples":50,"individualID.1":29,"individualID.2":65,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":1585,"infectionDiff":1765,"infectionDiffY":4.83562,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"029_066","label":"SNPs","pAvg":0.0184,"pSD":0.00482,"pScaled":0.00486,"pRank":15,"nSamples":50,"individualID.1":29,"individualID.2":66,"transmission":false,"snpDist":7,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":1732,"infectionDiff":1912,"infectionDiffY":5.23836,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"029_067","label":"SNPs","pAvg":0.0088,"pSD":0.00155,"pScaled":0.00222,"pRank":47,"nSamples":50,"individualID.1":29,"individualID.2":67,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":2854,"infectionDiff":2997,"infectionDiffY":8.21096,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"029_068","label":"SNPs","pAvg":0.00788,"pSD":0.00209,"pScaled":0.00172,"pRank":49,"nSamples":50,"individualID.1":29,"individualID.2":68,"transmission":false,"snpDist":3,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":2460,"infectionDiff":2649,"infectionDiffY":7.25753,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"029_069","label":"SNPs","pAvg":0.0017,"pSD":0.00046,"pScaled":0.00055,"pRank":58,"nSamples":50,"individualID.1":29,"individualID.2":69,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":2505,"infectionDiff":2676,"infectionDiffY":7.33151,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"029_070","label":"SNPs","pAvg":0.04813,"pSD":0.01349,"pScaled":0.0149,"pRank":7,"nSamples":50,"individualID.1":29,"individualID.2":70,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":1041,"infectionDiff":1093,"infectionDiffY":2.99452,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"029_071","label":"SNPs","pAvg":0.03091,"pSD":0.00824,"pScaled":0.03145,"pRank":12,"nSamples":500,"individualID.1":29,"individualID.2":71,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":2560,"infectionDiff":1352,"infectionDiffY":3.70411,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"029_072","label":"SNPs","pAvg":0.01099,"pSD":0.00394,"pScaled":0.00334,"pRank":17,"nSamples":50,"individualID.1":29,"individualID.2":72,"transmission":false,"snpDist":9,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":1001,"infectionDiff":1271,"infectionDiffY":3.48219,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"029_073","label":"SNPs","pAvg":0.00393,"pSD":0.00119,"pScaled":0.00289,"pRank":25,"nSamples":50,"individualID.1":29,"individualID.2":73,"transmission":false,"snpDist":5,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":2082,"infectionDiff":2022,"infectionDiffY":5.53973,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"029_074","label":"SNPs","pAvg":0.00333,"pSD":0.00124,"pScaled":0.00183,"pRank":23,"nSamples":50,"individualID.1":29,"individualID.2":74,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":1922,"infectionDiff":1402,"infectionDiffY":3.8411,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"029_075","label":"SNPs","pAvg":0.00362,"pSD":0.00098,"pScaled":0.01571,"pRank":17,"nSamples":500,"individualID.1":29,"individualID.2":75,"transmission":false,"snpDist":10,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":2588,"infectionDiff":2975,"infectionDiffY":8.15068,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"029_076","label":"SNPs","pAvg":0.0049,"pSD":0.00125,"pScaled":0.0012,"pRank":56,"nSamples":50,"individualID.1":29,"individualID.2":76,"transmission":false,"snpDist":3,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":2823,"infectionDiff":2649,"infectionDiffY":7.25753,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"029_077","label":"SNPs","pAvg":0.73083,"pSD":0.44349,"pScaled":0.1617,"pRank":1,"nSamples":185,"individualID.1":29,"individualID.2":77,"transmission":false,"snpDist":2,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":1976,"infectionDiff":2364,"infectionDiffY":6.47671,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"029_078","label":"SNPs","pAvg":0.01701,"pSD":0.00363,"pScaled":0.00377,"pRank":25,"nSamples":50,"individualID.1":29,"individualID.2":78,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":2667,"infectionDiff":2677,"infectionDiffY":7.33425,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"029_079","label":"SNPs","pAvg":0.00455,"pSD":0.00101,"pScaled":0.00229,"pRank":25,"nSamples":50,"individualID.1":29,"individualID.2":79,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":2075,"infectionDiff":1960,"infectionDiffY":5.36986,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"029_080","label":"SNPs","pAvg":0.00173,"pSD":0.00051,"pScaled":0.01267,"pRank":20,"nSamples":500,"individualID.1":29,"individualID.2":80,"transmission":false,"snpDist":7,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":2084,"infectionDiff":1893,"infectionDiffY":5.1863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"029_081","label":"SNPs","pAvg":0.00381,"pSD":0.00134,"pScaled":0.00095,"pRank":50,"nSamples":50,"individualID.1":29,"individualID.2":81,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":2800,"infectionDiff":3059,"infectionDiffY":8.38082,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"029_082","label":"SNPs","pAvg":0.00754,"pSD":0.00214,"pScaled":0.00164,"pRank":43,"nSamples":50,"individualID.1":29,"individualID.2":82,"transmission":false,"snpDist":4,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":2804,"infectionDiff":3137,"infectionDiffY":8.59452,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"029_083","label":"SNPs","pAvg":0.00802,"pSD":0.00206,"pScaled":0.00312,"pRank":45,"nSamples":50,"individualID.1":29,"individualID.2":83,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":2580,"infectionDiff":2606,"infectionDiffY":7.13973,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"029_084","label":"SNPs","pAvg":0.00047,"pSD":0.00146,"pScaled":0.00024,"pRank":58,"nSamples":500,"individualID.1":29,"individualID.2":84,"transmission":false,"snpDist":13,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":2823,"infectionDiff":2654,"infectionDiffY":7.27123,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"029_085","label":"SNPs","pAvg":0.00053,"pSD":0.00163,"pScaled":0.00018,"pRank":55,"nSamples":500,"individualID.1":29,"individualID.2":85,"transmission":false,"snpDist":11,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":1935,"infectionDiff":2320,"infectionDiffY":6.35616,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"029_086","label":"SNPs","pAvg":0.0017,"pSD":0.00047,"pScaled":0.00054,"pRank":38,"nSamples":50,"individualID.1":29,"individualID.2":86,"transmission":false,"snpDist":4,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":1773,"infectionDiff":1948,"infectionDiffY":5.33699,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"029_087","label":"SNPs","pAvg":0.002,"pSD":0.0006,"pScaled":0.00163,"pRank":31,"nSamples":50,"individualID.1":29,"individualID.2":87,"transmission":false,"snpDist":8,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":2308,"infectionDiff":2487,"infectionDiffY":6.8137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"029_088","label":"SNPs","pAvg":0.00877,"pSD":0.00244,"pScaled":0.0017,"pRank":34,"nSamples":50,"individualID.1":29,"individualID.2":88,"transmission":false,"snpDist":3,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":2417,"infectionDiff":2822,"infectionDiffY":7.73151,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"029_089","label":"SNPs","pAvg":0.00055,"pSD":0.00171,"pScaled":0.00018,"pRank":60,"nSamples":500,"individualID.1":29,"individualID.2":89,"transmission":false,"snpDist":12,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":2709,"infectionDiff":2658,"infectionDiffY":7.28219,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"029_090","label":"SNPs","pAvg":0.00535,"pSD":0.00124,"pScaled":0.00139,"pRank":23,"nSamples":50,"individualID.1":29,"individualID.2":90,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":2780,"infectionDiff":2885,"infectionDiffY":7.90411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"029_091","label":"SNPs","pAvg":0.00092,"pSD":0.00287,"pScaled":0.00046,"pRank":49,"nSamples":500,"individualID.1":29,"individualID.2":91,"transmission":false,"snpDist":12,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":2801,"infectionDiff":2476,"infectionDiffY":6.78356,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"029_092","label":"SNPs","pAvg":0.00046,"pSD":0.00141,"pScaled":0.00018,"pRank":62,"nSamples":500,"individualID.1":29,"individualID.2":92,"transmission":false,"snpDist":12,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":2848,"infectionDiff":2627,"infectionDiffY":7.19726,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"029_093","label":"SNPs","pAvg":0.00059,"pSD":0.00183,"pScaled":0.00016,"pRank":68,"nSamples":500,"individualID.1":29,"individualID.2":93,"transmission":false,"snpDist":13,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":2685,"infectionDiff":2852,"infectionDiffY":7.8137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"029_094","label":"SNPs","pAvg":0.00365,"pSD":0.00093,"pScaled":0.0012,"pRank":46,"nSamples":50,"individualID.1":29,"individualID.2":94,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":2731,"infectionDiff":3124,"infectionDiffY":8.5589,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"029_095","label":"SNPs","pAvg":0.00199,"pSD":0.00055,"pScaled":0.00101,"pRank":32,"nSamples":50,"individualID.1":29,"individualID.2":95,"transmission":false,"snpDist":8,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":2313,"infectionDiff":2556,"infectionDiffY":7.00274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"029_096","label":"SNPs","pAvg":0.00178,"pSD":0.00045,"pScaled":0.00063,"pRank":51,"nSamples":50,"individualID.1":29,"individualID.2":96,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":2408,"infectionDiff":2788,"infectionDiffY":7.63836,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"029_097","label":"SNPs","pAvg":0.00953,"pSD":0.00252,"pScaled":0.00214,"pRank":23,"nSamples":50,"individualID.1":29,"individualID.2":97,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":2651,"infectionDiff":2944,"infectionDiffY":8.06575,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"029_098","label":"SNPs","pAvg":0.00107,"pSD":0.00333,"pScaled":0.0003,"pRank":54,"nSamples":500,"individualID.1":29,"individualID.2":98,"transmission":false,"snpDist":12,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":2470,"infectionDiff":2717,"infectionDiffY":7.44384,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"029_099","label":"SNPs","pAvg":0.00302,"pSD":0.00084,"pScaled":0.00103,"pRank":38,"nSamples":50,"individualID.1":29,"individualID.2":99,"transmission":false,"snpDist":5,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":2452,"infectionDiff":2581,"infectionDiffY":7.07123,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"029_100","label":"SNPs","pAvg":0.00467,"pSD":0.00098,"pScaled":0.00138,"pRank":63,"nSamples":50,"individualID.1":29,"individualID.2":100,"transmission":false,"infectionDate.1":"1990-12-27 23:28:20","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1992-03-01 23:20:54","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":2652,"infectionDiff":2959,"infectionDiffY":8.10685,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"030_006","label":"SNPs","pAvg":0.08206,"pSD":0.01556,"pScaled":0.05241,"pRank":3,"nSamples":50,"individualID.1":30,"individualID.2":6,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":75,"infectionDiff":61,"infectionDiffY":0.16712,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"030_009","label":"SNPs","pAvg":0.00264,"pSD":0.00836,"pScaled":0.01176,"pRank":25,"nSamples":500,"individualID.1":30,"individualID.2":9,"transmission":false,"snpDist":13,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":2599,"infectionDiff":744,"infectionDiffY":2.03836,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"030_014","label":"SNPs","pAvg":0.05713,"pSD":0.01313,"pScaled":0.03138,"pRank":4,"nSamples":50,"individualID.1":30,"individualID.2":14,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":629,"infectionDiff":321,"infectionDiffY":0.87945,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"030_017","label":"SNPs","pAvg":0.06261,"pSD":0.01527,"pScaled":0.08728,"pRank":4,"nSamples":500,"individualID.1":30,"individualID.2":17,"transmission":false,"snpDist":9,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":1767,"infectionDiff":93,"infectionDiffY":0.25479,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"030_018","label":"SNPs","pAvg":0.02078,"pSD":0.00446,"pScaled":0.02355,"pRank":17,"nSamples":500,"individualID.1":30,"individualID.2":18,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":522,"infectionDiff":518,"infectionDiffY":1.41918,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"030_021","label":"SNPs","pAvg":0.04616,"pSD":0.01291,"pScaled":0.04406,"pRank":7,"nSamples":500,"individualID.1":30,"individualID.2":21,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":1967,"infectionDiff":515,"infectionDiffY":1.41096,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"030_023","label":"SNPs","pAvg":0.00921,"pSD":0.00211,"pScaled":0.0041,"pRank":45,"nSamples":50,"individualID.1":30,"individualID.2":23,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":2756,"infectionDiff":2283,"infectionDiffY":6.25479,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"030_026","label":"SNPs","pAvg":0.01489,"pSD":0.00599,"pScaled":0.00523,"pRank":16,"nSamples":50,"individualID.1":30,"individualID.2":26,"transmission":false,"snpDist":8,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":2360,"infectionDiff":1580,"infectionDiffY":4.32877,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"030_027","label":"SNPs","pAvg":0.01038,"pSD":0.00259,"pScaled":0.00371,"pRank":35,"nSamples":50,"individualID.1":30,"individualID.2":27,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":2533,"infectionDiff":2169,"infectionDiffY":5.94247,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"030_028","label":"SNPs","pAvg":0.03188,"pSD":0.00937,"pScaled":0.0089,"pRank":23,"nSamples":50,"individualID.1":30,"individualID.2":28,"transmission":false,"snpDist":7,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":1749,"infectionDiff":993,"infectionDiffY":2.72055,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"030_033","label":"SNPs","pAvg":0.00746,"pSD":0.00174,"pScaled":0.0034,"pRank":22,"nSamples":50,"individualID.1":30,"individualID.2":33,"transmission":false,"snpDist":10,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":1977,"infectionDiff":1851,"infectionDiffY":5.07123,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"030_035","label":"SNPs","pAvg":0.02168,"pSD":0.00496,"pScaled":0.00564,"pRank":21,"nSamples":50,"individualID.1":30,"individualID.2":35,"transmission":false,"snpDist":3,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":1939,"infectionDiff":648,"infectionDiffY":1.77534,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"030_036","label":"SNPs","pAvg":0.02369,"pSD":0.00673,"pScaled":0.00641,"pRank":25,"nSamples":50,"individualID.1":30,"individualID.2":36,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":1738,"infectionDiff":1459,"infectionDiffY":3.99726,"timeCat":"4","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"030_037","label":"SNPs","pAvg":0.05146,"pSD":0.01429,"pScaled":0.05189,"pRank":6,"nSamples":500,"individualID.1":30,"individualID.2":37,"transmission":true,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":2125,"infectionDiff":981,"infectionDiffY":2.68767,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"030_038","label":"SNPs","pAvg":0.07507,"pSD":0.01844,"pScaled":0.08912,"pRank":1,"nSamples":500,"individualID.1":30,"individualID.2":38,"transmission":true,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":1187,"infectionDiff":626,"infectionDiffY":1.71507,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"030_039","label":"SNPs","pAvg":0.09407,"pSD":0.01546,"pScaled":0.20294,"pRank":1,"nSamples":500,"individualID.1":30,"individualID.2":39,"transmission":true,"snpDist":5,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":1353,"infectionDiff":71,"infectionDiffY":0.19452,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"030_040","label":"SNPs","pAvg":0.00841,"pSD":0.00346,"pScaled":0.00752,"pRank":40,"nSamples":500,"individualID.1":30,"individualID.2":40,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":1761,"infectionDiff":1715,"infectionDiffY":4.69863,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"030_043","label":"SNPs","pAvg":0.00283,"pSD":0.00877,"pScaled":0.00382,"pRank":29,"nSamples":500,"individualID.1":30,"individualID.2":43,"transmission":false,"snpDist":11,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":2736,"infectionDiff":334,"infectionDiffY":0.91507,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"030_044","label":"SNPs","pAvg":0.02816,"pSD":0.00677,"pScaled":0.00758,"pRank":13,"nSamples":50,"individualID.1":30,"individualID.2":44,"transmission":false,"snpDist":8,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":356,"infectionDiff":235,"infectionDiffY":0.64384,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"030_045","label":"SNPs","pAvg":0.00183,"pSD":0.0058,"pScaled":0.00111,"pRank":46,"nSamples":500,"individualID.1":30,"individualID.2":45,"transmission":false,"snpDist":11,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":2134,"infectionDiff":1225,"infectionDiffY":3.35616,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"030_046","label":"SNPs","pAvg":0.0866,"pSD":0.01845,"pScaled":0.0501,"pRank":3,"nSamples":50,"individualID.1":30,"individualID.2":46,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":1039,"infectionDiff":180,"infectionDiffY":0.49315,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"030_047","label":"SNPs","pAvg":0.01873,"pSD":0.005,"pScaled":0.00404,"pRank":24,"nSamples":50,"individualID.1":30,"individualID.2":47,"transmission":false,"snpDist":9,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":985,"infectionDiff":911,"infectionDiffY":2.49589,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"030_048","label":"SNPs","pAvg":0.04278,"pSD":0.00936,"pScaled":0.01886,"pRank":7,"nSamples":50,"individualID.1":30,"individualID.2":48,"transmission":false,"snpDist":10,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":1268,"infectionDiff":445,"infectionDiffY":1.21918,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"030_049","label":"SNPs","pAvg":0.0491,"pSD":0.00952,"pScaled":0.03216,"pRank":6,"nSamples":50,"individualID.1":30,"individualID.2":49,"transmission":false,"snpDist":10,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":1003,"infectionDiff":63,"infectionDiffY":0.1726,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"030_051","label":"SNPs","pAvg":0.0229,"pSD":0.0051,"pScaled":0.01085,"pRank":19,"nSamples":50,"individualID.1":30,"individualID.2":51,"transmission":false,"snpDist":4,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":772,"infectionDiff":703,"infectionDiffY":1.92603,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"030_052","label":"SNPs","pAvg":0.01697,"pSD":0.0073,"pScaled":0.00637,"pRank":19,"nSamples":50,"individualID.1":30,"individualID.2":52,"transmission":false,"snpDist":5,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":2605,"infectionDiff":1731,"infectionDiffY":4.74247,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"030_053","label":"SNPs","pAvg":0.03179,"pSD":0.00846,"pScaled":0.02123,"pRank":7,"nSamples":50,"individualID.1":30,"individualID.2":53,"transmission":false,"snpDist":3,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":1292,"infectionDiff":1195,"infectionDiffY":3.27397,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"030_054","label":"SNPs","pAvg":0.00787,"pSD":0.00214,"pScaled":0.00205,"pRank":23,"nSamples":50,"individualID.1":30,"individualID.2":54,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":2463,"infectionDiff":2119,"infectionDiffY":5.80548,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"030_055","label":"SNPs","pAvg":0.01026,"pSD":0.00375,"pScaled":0.00315,"pRank":18,"nSamples":50,"individualID.1":30,"individualID.2":55,"transmission":false,"snpDist":3,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":1447,"infectionDiff":1387,"infectionDiffY":3.8,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"030_056","label":"SNPs","pAvg":0.01693,"pSD":0.00683,"pScaled":0.00405,"pRank":16,"nSamples":50,"individualID.1":30,"individualID.2":56,"transmission":false,"snpDist":3,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":1870,"infectionDiff":1471,"infectionDiffY":4.03014,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"030_057","label":"SNPs","pAvg":0.01777,"pSD":0.00378,"pScaled":0.00355,"pRank":17,"nSamples":50,"individualID.1":30,"individualID.2":57,"transmission":false,"snpDist":4,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":2434,"infectionDiff":2121,"infectionDiffY":5.81096,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"030_058","label":"SNPs","pAvg":0.01634,"pSD":0.00682,"pScaled":0.01613,"pRank":18,"nSamples":500,"individualID.1":30,"individualID.2":58,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":2718,"infectionDiff":1810,"infectionDiffY":4.9589,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"030_059","label":"SNPs","pAvg":0.03308,"pSD":0.00772,"pScaled":0.04755,"pRank":7,"nSamples":500,"individualID.1":30,"individualID.2":59,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":2098,"infectionDiff":274,"infectionDiffY":0.75068,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"030_060","label":"SNPs","pAvg":0.00905,"pSD":0.00177,"pScaled":0.00439,"pRank":34,"nSamples":50,"individualID.1":30,"individualID.2":60,"transmission":false,"snpDist":5,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":2760,"infectionDiff":2452,"infectionDiffY":6.71781,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"030_061","label":"SNPs","pAvg":0.00501,"pSD":0.0021,"pScaled":0.00952,"pRank":20,"nSamples":500,"individualID.1":30,"individualID.2":61,"transmission":false,"snpDist":4,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":2553,"infectionDiff":1670,"infectionDiffY":4.57534,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"030_062","label":"SNPs","pAvg":0.02606,"pSD":0.00659,"pScaled":0.0069,"pRank":18,"nSamples":50,"individualID.1":30,"individualID.2":62,"transmission":false,"snpDist":9,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":1288,"infectionDiff":574,"infectionDiffY":1.5726,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"030_063","label":"SNPs","pAvg":0.01674,"pSD":0.00447,"pScaled":0.00806,"pRank":13,"nSamples":50,"individualID.1":30,"individualID.2":63,"transmission":false,"snpDist":10,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":720,"infectionDiff":369,"infectionDiffY":1.01096,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"030_064","label":"SNPs","pAvg":0.01807,"pSD":0.0055,"pScaled":0.00686,"pRank":9,"nSamples":50,"individualID.1":30,"individualID.2":64,"transmission":false,"snpDist":4,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":1502,"infectionDiff":1351,"infectionDiffY":3.70137,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"030_065","label":"SNPs","pAvg":0.02106,"pSD":0.00629,"pScaled":0.01625,"pRank":4,"nSamples":50,"individualID.1":30,"individualID.2":65,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":1510,"infectionDiff":1284,"infectionDiffY":3.51781,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"030_066","label":"SNPs","pAvg":0.01995,"pSD":0.00636,"pScaled":0.00527,"pRank":13,"nSamples":50,"individualID.1":30,"individualID.2":66,"transmission":false,"snpDist":4,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":1657,"infectionDiff":1431,"infectionDiffY":3.92055,"timeCat":"4","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"030_067","label":"SNPs","pAvg":0.01699,"pSD":0.00347,"pScaled":0.00429,"pRank":27,"nSamples":50,"individualID.1":30,"individualID.2":67,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":2779,"infectionDiff":2516,"infectionDiffY":6.89315,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"030_068","label":"SNPs","pAvg":0.64475,"pSD":0.47833,"pScaled":0.14085,"pRank":3,"nSamples":140,"individualID.1":30,"individualID.2":68,"transmission":false,"snpDist":2,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":2385,"infectionDiff":2168,"infectionDiffY":5.93973,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":true} {"pairID":"030_069","label":"SNPs","pAvg":0.00443,"pSD":0.00108,"pScaled":0.00142,"pRank":39,"nSamples":50,"individualID.1":30,"individualID.2":69,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":2430,"infectionDiff":2195,"infectionDiffY":6.0137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"030_070","label":"SNPs","pAvg":0.04652,"pSD":0.01216,"pScaled":0.0144,"pRank":9,"nSamples":50,"individualID.1":30,"individualID.2":70,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":967,"infectionDiff":612,"infectionDiffY":1.67671,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"030_071","label":"SNPs","pAvg":0.03387,"pSD":0.01072,"pScaled":0.03446,"pRank":11,"nSamples":500,"individualID.1":30,"individualID.2":71,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":2485,"infectionDiff":871,"infectionDiffY":2.3863,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"030_072","label":"SNPs","pAvg":0.00555,"pSD":0.00184,"pScaled":0.00169,"pRank":26,"nSamples":50,"individualID.1":30,"individualID.2":72,"transmission":false,"snpDist":10,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":926,"infectionDiff":790,"infectionDiffY":2.16438,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"030_073","label":"SNPs","pAvg":0.00343,"pSD":0.00159,"pScaled":0.00252,"pRank":33,"nSamples":50,"individualID.1":30,"individualID.2":73,"transmission":false,"snpDist":6,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":2007,"infectionDiff":1541,"infectionDiffY":4.22192,"timeCat":"5","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"030_074","label":"SNPs","pAvg":0.00612,"pSD":0.00224,"pScaled":0.00336,"pRank":14,"nSamples":50,"individualID.1":30,"individualID.2":74,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":1847,"infectionDiff":921,"infectionDiffY":2.52329,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"030_075","label":"SNPs","pAvg":0.00313,"pSD":0.00084,"pScaled":0.01361,"pRank":20,"nSamples":500,"individualID.1":30,"individualID.2":75,"transmission":false,"snpDist":7,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":2513,"infectionDiff":2494,"infectionDiffY":6.83288,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"030_076","label":"SNPs","pAvg":0.42284,"pSD":0.49261,"pScaled":0.10364,"pRank":5,"nSamples":86,"individualID.1":30,"individualID.2":76,"transmission":false,"snpDist":2,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":2748,"infectionDiff":2168,"infectionDiffY":5.93973,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"030_077","label":"SNPs","pAvg":0.52327,"pSD":0.49783,"pScaled":0.11578,"pRank":5,"nSamples":104,"individualID.1":30,"individualID.2":77,"transmission":false,"snpDist":1,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":1901,"infectionDiff":1883,"infectionDiffY":5.1589,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"030_078","label":"SNPs","pAvg":0.00867,"pSD":0.00167,"pScaled":0.00192,"pRank":48,"nSamples":50,"individualID.1":30,"individualID.2":78,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":2592,"infectionDiff":2196,"infectionDiffY":6.01644,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"030_079","label":"SNPs","pAvg":0.00185,"pSD":0.00084,"pScaled":0.00093,"pRank":41,"nSamples":50,"individualID.1":30,"individualID.2":79,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":2000,"infectionDiff":1479,"infectionDiffY":4.05205,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"030_080","label":"SNPs","pAvg":0.00429,"pSD":0.00147,"pScaled":0.03131,"pRank":5,"nSamples":500,"individualID.1":30,"individualID.2":80,"transmission":false,"snpDist":8,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":2009,"infectionDiff":1412,"infectionDiffY":3.86849,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"030_081","label":"SNPs","pAvg":0.00329,"pSD":0.00116,"pScaled":0.00082,"pRank":58,"nSamples":50,"individualID.1":30,"individualID.2":81,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":2725,"infectionDiff":2578,"infectionDiffY":7.06301,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"030_082","label":"SNPs","pAvg":0.0052,"pSD":0.00131,"pScaled":0.00113,"pRank":60,"nSamples":50,"individualID.1":30,"individualID.2":82,"transmission":false,"snpDist":3,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":2729,"infectionDiff":2656,"infectionDiffY":7.27671,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"030_083","label":"SNPs","pAvg":0.00543,"pSD":0.00131,"pScaled":0.00211,"pRank":57,"nSamples":50,"individualID.1":30,"individualID.2":83,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":2505,"infectionDiff":2125,"infectionDiffY":5.82192,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"030_084","label":"SNPs","pAvg":0.0002,"pSD":0.00061,"pScaled":0.0001,"pRank":72,"nSamples":500,"individualID.1":30,"individualID.2":84,"transmission":false,"snpDist":14,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":2748,"infectionDiff":2173,"infectionDiffY":5.95342,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"030_085","label":"SNPs","pAvg":0.00016,"pSD":0.0005,"pScaled":0.00005,"pRank":66,"nSamples":500,"individualID.1":30,"individualID.2":85,"transmission":false,"snpDist":12,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":1860,"infectionDiff":1839,"infectionDiffY":5.03836,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"030_086","label":"SNPs","pAvg":0.00447,"pSD":0.00203,"pScaled":0.00142,"pRank":26,"nSamples":50,"individualID.1":30,"individualID.2":86,"transmission":false,"snpDist":5,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":1698,"infectionDiff":1467,"infectionDiffY":4.01918,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"030_087","label":"SNPs","pAvg":0.00599,"pSD":0.00152,"pScaled":0.00488,"pRank":11,"nSamples":50,"individualID.1":30,"individualID.2":87,"transmission":false,"snpDist":9,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":2233,"infectionDiff":2006,"infectionDiffY":5.49589,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"030_088","label":"SNPs","pAvg":0.64445,"pSD":0.47874,"pScaled":0.12471,"pRank":2,"nSamples":140,"individualID.1":30,"individualID.2":88,"transmission":false,"snpDist":2,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":2342,"infectionDiff":2341,"infectionDiffY":6.4137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"030_089","label":"SNPs","pAvg":0.00017,"pSD":0.00055,"pScaled":0.00006,"pRank":80,"nSamples":500,"individualID.1":30,"individualID.2":89,"transmission":false,"snpDist":13,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":2634,"infectionDiff":2177,"infectionDiffY":5.96438,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"030_090","label":"SNPs","pAvg":0.00172,"pSD":0.00045,"pScaled":0.00045,"pRank":50,"nSamples":50,"individualID.1":30,"individualID.2":90,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":2705,"infectionDiff":2404,"infectionDiffY":6.5863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"030_091","label":"SNPs","pAvg":0.00045,"pSD":0.00138,"pScaled":0.00023,"pRank":69,"nSamples":500,"individualID.1":30,"individualID.2":91,"transmission":false,"snpDist":13,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":2726,"infectionDiff":1995,"infectionDiffY":5.46575,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"030_092","label":"SNPs","pAvg":0.00019,"pSD":0.0006,"pScaled":0.00008,"pRank":71,"nSamples":500,"individualID.1":30,"individualID.2":92,"transmission":false,"snpDist":13,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":2773,"infectionDiff":2146,"infectionDiffY":5.87945,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"030_093","label":"SNPs","pAvg":0.00018,"pSD":0.00058,"pScaled":0.00005,"pRank":87,"nSamples":500,"individualID.1":30,"individualID.2":93,"transmission":false,"snpDist":14,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":2610,"infectionDiff":2371,"infectionDiffY":6.49589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"030_094","label":"SNPs","pAvg":0.01095,"pSD":0.00252,"pScaled":0.00361,"pRank":22,"nSamples":50,"individualID.1":30,"individualID.2":94,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":2656,"infectionDiff":2643,"infectionDiffY":7.2411,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"030_095","label":"SNPs","pAvg":0.00609,"pSD":0.00155,"pScaled":0.0031,"pRank":12,"nSamples":50,"individualID.1":30,"individualID.2":95,"transmission":false,"snpDist":9,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":2238,"infectionDiff":2075,"infectionDiffY":5.68493,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"030_096","label":"SNPs","pAvg":0.00531,"pSD":0.00136,"pScaled":0.00186,"pRank":24,"nSamples":50,"individualID.1":30,"individualID.2":96,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":2333,"infectionDiff":2307,"infectionDiffY":6.32055,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"030_097","label":"SNPs","pAvg":0.00476,"pSD":0.00107,"pScaled":0.00107,"pRank":49,"nSamples":50,"individualID.1":30,"individualID.2":97,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":2576,"infectionDiff":2463,"infectionDiffY":6.74795,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"030_098","label":"SNPs","pAvg":0.00033,"pSD":0.00103,"pScaled":0.00009,"pRank":80,"nSamples":500,"individualID.1":30,"individualID.2":98,"transmission":false,"snpDist":13,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":2395,"infectionDiff":2236,"infectionDiffY":6.12603,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"030_099","label":"SNPs","pAvg":0.01048,"pSD":0.00266,"pScaled":0.00358,"pRank":20,"nSamples":50,"individualID.1":30,"individualID.2":99,"transmission":false,"snpDist":6,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":2378,"infectionDiff":2100,"infectionDiffY":5.75342,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"030_100","label":"SNPs","pAvg":0.00948,"pSD":0.00239,"pScaled":0.00279,"pRank":39,"nSamples":50,"individualID.1":30,"individualID.2":100,"transmission":false,"infectionDate.1":"1992-04-22 00:17:11","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1992-05-15 21:31:39","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":2577,"infectionDiff":2478,"infectionDiffY":6.78904,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"031_006","label":"SNPs","pAvg":0.03915,"pSD":0.01164,"pScaled":0.025,"pRank":8,"nSamples":50,"individualID.1":31,"individualID.2":6,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":379,"infectionDiff":535,"infectionDiffY":1.46575,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"031_009","label":"SNPs","pAvg":0.00093,"pSD":0.00299,"pScaled":0.00416,"pRank":37,"nSamples":500,"individualID.1":31,"individualID.2":9,"transmission":false,"snpDist":12,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":2902,"infectionDiff":1218,"infectionDiffY":3.33699,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"031_010","label":"SNPs","pAvg":0.03899,"pSD":0.00955,"pScaled":0.02825,"pRank":5,"nSamples":50,"individualID.1":31,"individualID.2":10,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":354,"infectionDiff":259,"infectionDiffY":0.70959,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"031_014","label":"SNPs","pAvg":0.04271,"pSD":0.01247,"pScaled":0.02346,"pRank":10,"nSamples":50,"individualID.1":31,"individualID.2":14,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":933,"infectionDiff":796,"infectionDiffY":2.18082,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"031_017","label":"SNPs","pAvg":0.08329,"pSD":0.02191,"pScaled":0.11611,"pRank":1,"nSamples":500,"individualID.1":31,"individualID.2":17,"transmission":false,"snpDist":8,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":2071,"infectionDiff":567,"infectionDiffY":1.55342,"timeCat":"2","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"031_018","label":"SNPs","pAvg":0.02462,"pSD":0.00606,"pScaled":0.0279,"pRank":15,"nSamples":500,"individualID.1":31,"individualID.2":18,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":826,"infectionDiff":992,"infectionDiffY":2.71781,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"031_021","label":"SNPs","pAvg":0.04136,"pSD":0.01258,"pScaled":0.03948,"pRank":10,"nSamples":500,"individualID.1":31,"individualID.2":21,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":2271,"infectionDiff":989,"infectionDiffY":2.70959,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"031_023","label":"SNPs","pAvg":0.02005,"pSD":0.00515,"pScaled":0.00892,"pRank":18,"nSamples":50,"individualID.1":31,"individualID.2":23,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":3060,"infectionDiff":2757,"infectionDiffY":7.55342,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"031_024","label":"SNPs","pAvg":0.05135,"pSD":0.01508,"pScaled":0.03969,"pRank":3,"nSamples":50,"individualID.1":31,"individualID.2":24,"transmission":false,"snpDist":7,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1991-02-07 21:59:42","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1992-10-05 23:05:30","sampleDiff":447,"infectionDiff":35,"infectionDiffY":0.09589,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"031_026","label":"SNPs","pAvg":0.00755,"pSD":0.00239,"pScaled":0.00265,"pRank":34,"nSamples":50,"individualID.1":31,"individualID.2":26,"transmission":false,"snpDist":7,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":2664,"infectionDiff":2054,"infectionDiffY":5.6274,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"031_027","label":"SNPs","pAvg":0.01299,"pSD":0.00393,"pScaled":0.00464,"pRank":31,"nSamples":50,"individualID.1":31,"individualID.2":27,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":2836,"infectionDiff":2643,"infectionDiffY":7.2411,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"031_028","label":"SNPs","pAvg":0.02197,"pSD":0.00839,"pScaled":0.00614,"pRank":28,"nSamples":50,"individualID.1":31,"individualID.2":28,"transmission":false,"snpDist":6,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":2053,"infectionDiff":1468,"infectionDiffY":4.02192,"timeCat":"5","Z1":"1","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"031_030","label":"SNPs","pAvg":0.03221,"pSD":0.00931,"pScaled":0.02253,"pRank":6,"nSamples":50,"individualID.1":31,"individualID.2":30,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":304,"infectionDiff":474,"infectionDiffY":1.29863,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"031_032","label":"SNPs","pAvg":0.0428,"pSD":0.01241,"pScaled":0.02918,"pRank":4,"nSamples":50,"individualID.1":31,"individualID.2":32,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":1734,"infectionDiff":420,"infectionDiffY":1.15068,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"031_033","label":"SNPs","pAvg":0.00432,"pSD":0.00125,"pScaled":0.00197,"pRank":44,"nSamples":50,"individualID.1":31,"individualID.2":33,"transmission":false,"snpDist":9,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":2281,"infectionDiff":2325,"infectionDiffY":6.36986,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"031_034","label":"SNPs","pAvg":0.05059,"pSD":0.01402,"pScaled":0.17,"pRank":2,"nSamples":500,"individualID.1":31,"individualID.2":34,"transmission":false,"snpDist":6,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1991-02-12 02:53:34","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1995-02-08 22:32:57","sampleDiff":1303,"infectionDiff":39,"infectionDiffY":0.10685,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"031_035","label":"SNPs","pAvg":0.70478,"pSD":0.45297,"pScaled":0.18324,"pRank":2,"nSamples":167,"individualID.1":31,"individualID.2":35,"transmission":false,"snpDist":2,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":2243,"infectionDiff":1122,"infectionDiffY":3.07397,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":true} {"pairID":"031_036","label":"SNPs","pAvg":0.01854,"pSD":0.00456,"pScaled":0.00501,"pRank":32,"nSamples":50,"individualID.1":31,"individualID.2":36,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":2042,"infectionDiff":1933,"infectionDiffY":5.29589,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"031_037","label":"SNPs","pAvg":0.02734,"pSD":0.00768,"pScaled":0.02757,"pRank":13,"nSamples":500,"individualID.1":31,"individualID.2":37,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":2429,"infectionDiff":1455,"infectionDiffY":3.9863,"timeCat":"4","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"031_038","label":"SNPs","pAvg":0.01612,"pSD":0.00576,"pScaled":0.01913,"pRank":17,"nSamples":500,"individualID.1":31,"individualID.2":38,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":1491,"infectionDiff":1100,"infectionDiffY":3.0137,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"031_039","label":"SNPs","pAvg":0.03429,"pSD":0.00975,"pScaled":0.07399,"pRank":5,"nSamples":500,"individualID.1":31,"individualID.2":39,"transmission":false,"snpDist":6,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":1656,"infectionDiff":546,"infectionDiffY":1.49589,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"031_040","label":"SNPs","pAvg":0.01454,"pSD":0.00414,"pScaled":0.01301,"pRank":24,"nSamples":500,"individualID.1":31,"individualID.2":40,"transmission":true,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":2064,"infectionDiff":2189,"infectionDiffY":5.99726,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"031_041","label":"SNPs","pAvg":0.03958,"pSD":0.01194,"pScaled":0.10275,"pRank":3,"nSamples":500,"individualID.1":31,"individualID.2":41,"transmission":true,"snpDist":4,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":2914,"infectionDiff":390,"infectionDiffY":1.06849,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"031_042","label":"SNPs","pAvg":0.75062,"pSD":0.41102,"pScaled":0.27707,"pRank":2,"nSamples":185,"individualID.1":31,"individualID.2":42,"transmission":true,"snpDist":0,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":318,"infectionDiff":41,"infectionDiffY":0.11233,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":true} {"pairID":"031_043","label":"SNPs","pAvg":0.03768,"pSD":0.01172,"pScaled":0.05086,"pRank":8,"nSamples":500,"individualID.1":31,"individualID.2":43,"transmission":false,"snpDist":10,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":3039,"infectionDiff":808,"infectionDiffY":2.2137,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"031_044","label":"SNPs","pAvg":0.0496,"pSD":0.01362,"pScaled":0.01335,"pRank":7,"nSamples":50,"individualID.1":31,"individualID.2":44,"transmission":false,"snpDist":7,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":660,"infectionDiff":709,"infectionDiffY":1.94247,"timeCat":"2","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"031_045","label":"SNPs","pAvg":0.00635,"pSD":0.00289,"pScaled":0.00384,"pRank":31,"nSamples":50,"individualID.1":31,"individualID.2":45,"transmission":false,"snpDist":10,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":2438,"infectionDiff":1700,"infectionDiffY":4.65753,"timeCat":"5","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"031_046","label":"SNPs","pAvg":0.05736,"pSD":0.01497,"pScaled":0.03318,"pRank":7,"nSamples":50,"individualID.1":31,"individualID.2":46,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":1343,"infectionDiff":654,"infectionDiffY":1.79178,"timeCat":"2","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"031_047","label":"SNPs","pAvg":0.02053,"pSD":0.008,"pScaled":0.00443,"pRank":21,"nSamples":50,"individualID.1":31,"individualID.2":47,"transmission":false,"snpDist":8,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":1289,"infectionDiff":1386,"infectionDiffY":3.79726,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"031_048","label":"SNPs","pAvg":0.01896,"pSD":0.00666,"pScaled":0.00836,"pRank":12,"nSamples":50,"individualID.1":31,"individualID.2":48,"transmission":false,"snpDist":9,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":1572,"infectionDiff":920,"infectionDiffY":2.52055,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"031_049","label":"SNPs","pAvg":0.0631,"pSD":0.01769,"pScaled":0.04133,"pRank":4,"nSamples":50,"individualID.1":31,"individualID.2":49,"transmission":false,"snpDist":9,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":1307,"infectionDiff":538,"infectionDiffY":1.47397,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"031_050","label":"SNPs","pAvg":0.02317,"pSD":0.00671,"pScaled":0.10118,"pRank":4,"nSamples":500,"individualID.1":31,"individualID.2":50,"transmission":false,"snpDist":3,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":1162,"infectionDiff":210,"infectionDiffY":0.57534,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"031_051","label":"SNPs","pAvg":0.02456,"pSD":0.00737,"pScaled":0.01163,"pRank":18,"nSamples":50,"individualID.1":31,"individualID.2":51,"transmission":false,"snpDist":3,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":1076,"infectionDiff":1177,"infectionDiffY":3.22466,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"031_052","label":"SNPs","pAvg":0.00751,"pSD":0.00216,"pScaled":0.00282,"pRank":42,"nSamples":50,"individualID.1":31,"individualID.2":52,"transmission":false,"snpDist":4,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":2908,"infectionDiff":2205,"infectionDiffY":6.0411,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"031_053","label":"SNPs","pAvg":0.00815,"pSD":0.00435,"pScaled":0.00544,"pRank":23,"nSamples":50,"individualID.1":31,"individualID.2":53,"transmission":false,"snpDist":4,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":1596,"infectionDiff":1669,"infectionDiffY":4.5726,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"031_054","label":"SNPs","pAvg":0.00465,"pSD":0.00134,"pScaled":0.00121,"pRank":47,"nSamples":50,"individualID.1":31,"individualID.2":54,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":2767,"infectionDiff":2594,"infectionDiffY":7.10685,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"031_055","label":"SNPs","pAvg":0.0076,"pSD":0.00217,"pScaled":0.00233,"pRank":27,"nSamples":50,"individualID.1":31,"individualID.2":55,"transmission":false,"snpDist":4,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":1750,"infectionDiff":1861,"infectionDiffY":5.09863,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"031_056","label":"SNPs","pAvg":0.00769,"pSD":0.0024,"pScaled":0.00184,"pRank":30,"nSamples":50,"individualID.1":31,"individualID.2":56,"transmission":false,"snpDist":4,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":2174,"infectionDiff":1946,"infectionDiffY":5.33151,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"031_057","label":"SNPs","pAvg":0.00765,"pSD":0.00221,"pScaled":0.00153,"pRank":34,"nSamples":50,"individualID.1":31,"individualID.2":57,"transmission":false,"snpDist":5,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":2737,"infectionDiff":2596,"infectionDiffY":7.11233,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"031_058","label":"SNPs","pAvg":0.00751,"pSD":0.0022,"pScaled":0.00741,"pRank":36,"nSamples":500,"individualID.1":31,"individualID.2":58,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":3022,"infectionDiff":2284,"infectionDiffY":6.25753,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"031_059","label":"SNPs","pAvg":0.03314,"pSD":0.01169,"pScaled":0.04763,"pRank":6,"nSamples":500,"individualID.1":31,"individualID.2":59,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":2402,"infectionDiff":748,"infectionDiffY":2.04932,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"031_060","label":"SNPs","pAvg":0.01478,"pSD":0.00398,"pScaled":0.00716,"pRank":26,"nSamples":50,"individualID.1":31,"individualID.2":60,"transmission":false,"snpDist":4,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":3064,"infectionDiff":2926,"infectionDiffY":8.01644,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"031_061","label":"SNPs","pAvg":0.00139,"pSD":0.00047,"pScaled":0.00264,"pRank":49,"nSamples":500,"individualID.1":31,"individualID.2":61,"transmission":false,"snpDist":3,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":2857,"infectionDiff":2144,"infectionDiffY":5.87397,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"031_062","label":"SNPs","pAvg":0.03139,"pSD":0.01127,"pScaled":0.00831,"pRank":15,"nSamples":50,"individualID.1":31,"individualID.2":62,"transmission":false,"snpDist":8,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":1591,"infectionDiff":1049,"infectionDiffY":2.87397,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"031_063","label":"SNPs","pAvg":0.02375,"pSD":0.00745,"pScaled":0.01143,"pRank":9,"nSamples":50,"individualID.1":31,"individualID.2":63,"transmission":false,"snpDist":9,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":1023,"infectionDiff":843,"infectionDiffY":2.30959,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"031_064","label":"SNPs","pAvg":0.00629,"pSD":0.00266,"pScaled":0.00239,"pRank":20,"nSamples":50,"individualID.1":31,"individualID.2":64,"transmission":false,"snpDist":5,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":1806,"infectionDiff":1825,"infectionDiffY":5,"timeCat":"5","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"031_065","label":"SNPs","pAvg":0.00275,"pSD":0.00158,"pScaled":0.00213,"pRank":32,"nSamples":50,"individualID.1":31,"individualID.2":65,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":1814,"infectionDiff":1758,"infectionDiffY":4.81644,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"031_066","label":"SNPs","pAvg":0.02256,"pSD":0.00553,"pScaled":0.00596,"pRank":10,"nSamples":50,"individualID.1":31,"individualID.2":66,"transmission":false,"snpDist":5,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":1961,"infectionDiff":1905,"infectionDiffY":5.21918,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"031_067","label":"SNPs","pAvg":0.00811,"pSD":0.00233,"pScaled":0.00205,"pRank":49,"nSamples":50,"individualID.1":31,"individualID.2":67,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":3083,"infectionDiff":2990,"infectionDiffY":8.19178,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"031_068","label":"SNPs","pAvg":0.66773,"pSD":0.46913,"pScaled":0.14587,"pRank":2,"nSamples":149,"individualID.1":31,"individualID.2":68,"transmission":false,"snpDist":1,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":2689,"infectionDiff":2642,"infectionDiffY":7.23836,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":true} {"pairID":"031_069","label":"SNPs","pAvg":0.00147,"pSD":0.00047,"pScaled":0.00047,"pRank":72,"nSamples":50,"individualID.1":31,"individualID.2":69,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":2734,"infectionDiff":2669,"infectionDiffY":7.31233,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"031_070","label":"SNPs","pAvg":0.04055,"pSD":0.01273,"pScaled":0.01255,"pRank":13,"nSamples":50,"individualID.1":31,"individualID.2":70,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":1270,"infectionDiff":1087,"infectionDiffY":2.97808,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"031_071","label":"SNPs","pAvg":0.02674,"pSD":0.00883,"pScaled":0.02721,"pRank":18,"nSamples":500,"individualID.1":31,"individualID.2":71,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":2789,"infectionDiff":1345,"infectionDiffY":3.68493,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"031_072","label":"SNPs","pAvg":0.00943,"pSD":0.00335,"pScaled":0.00287,"pRank":21,"nSamples":50,"individualID.1":31,"individualID.2":72,"transmission":false,"snpDist":9,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":1230,"infectionDiff":1264,"infectionDiffY":3.46301,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"031_073","label":"SNPs","pAvg":0.00418,"pSD":0.00124,"pScaled":0.00308,"pRank":20,"nSamples":50,"individualID.1":31,"individualID.2":73,"transmission":false,"snpDist":5,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":2311,"infectionDiff":2015,"infectionDiffY":5.52055,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"031_074","label":"SNPs","pAvg":0.00291,"pSD":0.00125,"pScaled":0.00159,"pRank":27,"nSamples":50,"individualID.1":31,"individualID.2":74,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":2151,"infectionDiff":1396,"infectionDiffY":3.82466,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"031_075","label":"SNPs","pAvg":0.00311,"pSD":0.00099,"pScaled":0.01349,"pRank":22,"nSamples":500,"individualID.1":31,"individualID.2":75,"transmission":false,"snpDist":8,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":2817,"infectionDiff":2969,"infectionDiffY":8.13425,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"031_076","label":"SNPs","pAvg":0.68487,"pSD":0.46462,"pScaled":0.16786,"pRank":2,"nSamples":158,"individualID.1":31,"individualID.2":76,"transmission":false,"snpDist":1,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":3052,"infectionDiff":2642,"infectionDiffY":7.23836,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":true} {"pairID":"031_077","label":"SNPs","pAvg":0.55911,"pSD":0.4971,"pScaled":0.12371,"pRank":4,"nSamples":113,"individualID.1":31,"individualID.2":77,"transmission":false,"snpDist":0,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":2205,"infectionDiff":2357,"infectionDiffY":6.45753,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":true} {"pairID":"031_078","label":"SNPs","pAvg":0.01493,"pSD":0.0041,"pScaled":0.00331,"pRank":29,"nSamples":50,"individualID.1":31,"individualID.2":78,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":2896,"infectionDiff":2670,"infectionDiffY":7.31507,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"031_079","label":"SNPs","pAvg":0.00408,"pSD":0.00118,"pScaled":0.00205,"pRank":30,"nSamples":50,"individualID.1":31,"individualID.2":79,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":2304,"infectionDiff":1954,"infectionDiffY":5.35342,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"031_080","label":"SNPs","pAvg":0.0021,"pSD":0.00066,"pScaled":0.01534,"pRank":11,"nSamples":500,"individualID.1":31,"individualID.2":80,"transmission":false,"snpDist":7,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":2313,"infectionDiff":1886,"infectionDiffY":5.16712,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"031_081","label":"SNPs","pAvg":0.00474,"pSD":0.00141,"pScaled":0.00118,"pRank":38,"nSamples":50,"individualID.1":31,"individualID.2":81,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":3029,"infectionDiff":3053,"infectionDiffY":8.36438,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"031_082","label":"SNPs","pAvg":0.66655,"pSD":0.47079,"pScaled":0.14511,"pRank":1,"nSamples":149,"individualID.1":31,"individualID.2":82,"transmission":false,"snpDist":2,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":3033,"infectionDiff":3130,"infectionDiffY":8.57534,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":true} {"pairID":"031_083","label":"SNPs","pAvg":0.01023,"pSD":0.00277,"pScaled":0.00398,"pRank":31,"nSamples":50,"individualID.1":31,"individualID.2":83,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":2809,"infectionDiff":2600,"infectionDiffY":7.12329,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"031_084","label":"SNPs","pAvg":0.00041,"pSD":0.00129,"pScaled":0.00021,"pRank":66,"nSamples":500,"individualID.1":31,"individualID.2":84,"transmission":false,"snpDist":13,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":3052,"infectionDiff":2648,"infectionDiffY":7.25479,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"031_085","label":"SNPs","pAvg":0.00046,"pSD":0.00143,"pScaled":0.00016,"pRank":57,"nSamples":500,"individualID.1":31,"individualID.2":85,"transmission":false,"snpDist":11,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":2164,"infectionDiff":2313,"infectionDiffY":6.33699,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"031_086","label":"SNPs","pAvg":0.00144,"pSD":0.00041,"pScaled":0.00046,"pRank":48,"nSamples":50,"individualID.1":31,"individualID.2":86,"transmission":false,"snpDist":4,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":2002,"infectionDiff":1941,"infectionDiffY":5.31781,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"031_087","label":"SNPs","pAvg":0.00222,"pSD":0.00074,"pScaled":0.00181,"pRank":26,"nSamples":50,"individualID.1":31,"individualID.2":87,"transmission":false,"snpDist":8,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":2537,"infectionDiff":2480,"infectionDiffY":6.79452,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"031_088","label":"SNPs","pAvg":0.35544,"pSD":0.47676,"pScaled":0.06878,"pRank":7,"nSamples":77,"individualID.1":31,"individualID.2":88,"transmission":false,"snpDist":1,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":2646,"infectionDiff":2815,"infectionDiffY":7.71233,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":true} {"pairID":"031_089","label":"SNPs","pAvg":0.00048,"pSD":0.00149,"pScaled":0.00015,"pRank":65,"nSamples":500,"individualID.1":31,"individualID.2":89,"transmission":false,"snpDist":12,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":2938,"infectionDiff":2651,"infectionDiffY":7.26301,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"031_090","label":"SNPs","pAvg":0.0047,"pSD":0.00117,"pScaled":0.00122,"pRank":32,"nSamples":50,"individualID.1":31,"individualID.2":90,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":3008,"infectionDiff":2878,"infectionDiffY":7.88493,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"031_091","label":"SNPs","pAvg":0.00082,"pSD":0.00257,"pScaled":0.00041,"pRank":54,"nSamples":500,"individualID.1":31,"individualID.2":91,"transmission":false,"snpDist":12,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":3030,"infectionDiff":2469,"infectionDiffY":6.76438,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"031_092","label":"SNPs","pAvg":0.00041,"pSD":0.00127,"pScaled":0.00016,"pRank":67,"nSamples":500,"individualID.1":31,"individualID.2":92,"transmission":false,"snpDist":12,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":3077,"infectionDiff":2620,"infectionDiffY":7.17808,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"031_093","label":"SNPs","pAvg":0.00075,"pSD":0.00236,"pScaled":0.00021,"pRank":57,"nSamples":500,"individualID.1":31,"individualID.2":93,"transmission":false,"snpDist":13,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":2914,"infectionDiff":2846,"infectionDiffY":7.79726,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"031_094","label":"SNPs","pAvg":0.00292,"pSD":0.00096,"pScaled":0.00096,"pRank":50,"nSamples":50,"individualID.1":31,"individualID.2":94,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":2960,"infectionDiff":3117,"infectionDiffY":8.53973,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"031_095","label":"SNPs","pAvg":0.00218,"pSD":0.00078,"pScaled":0.00111,"pRank":27,"nSamples":50,"individualID.1":31,"individualID.2":95,"transmission":false,"snpDist":8,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":2542,"infectionDiff":2549,"infectionDiffY":6.98356,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"031_096","label":"SNPs","pAvg":0.00145,"pSD":0.0005,"pScaled":0.00051,"pRank":62,"nSamples":50,"individualID.1":31,"individualID.2":96,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":2637,"infectionDiff":2781,"infectionDiffY":7.61918,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"031_097","label":"SNPs","pAvg":0.00805,"pSD":0.00217,"pScaled":0.0018,"pRank":34,"nSamples":50,"individualID.1":31,"individualID.2":97,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":2880,"infectionDiff":2937,"infectionDiffY":8.04658,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"031_098","label":"SNPs","pAvg":0.00093,"pSD":0.00291,"pScaled":0.00026,"pRank":58,"nSamples":500,"individualID.1":31,"individualID.2":98,"transmission":false,"snpDist":12,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":2698,"infectionDiff":2710,"infectionDiffY":7.42466,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"031_099","label":"SNPs","pAvg":0.00257,"pSD":0.00084,"pScaled":0.00088,"pRank":44,"nSamples":50,"individualID.1":31,"individualID.2":99,"transmission":false,"snpDist":5,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":2681,"infectionDiff":2574,"infectionDiffY":7.05205,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"031_100","label":"SNPs","pAvg":0.00391,"pSD":0.0011,"pScaled":0.00115,"pRank":69,"nSamples":50,"individualID.1":31,"individualID.2":100,"transmission":false,"infectionDate.1":"1991-01-03 16:49:07","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1991-07-17 03:37:35","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":2881,"infectionDiff":2952,"infectionDiffY":8.08767,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"032_006","label":"SNPs","pAvg":0.02278,"pSD":0.00617,"pScaled":0.01455,"pRank":10,"nSamples":50,"individualID.1":32,"individualID.2":6,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":-1355,"infectionDiff":115,"infectionDiffY":0.31507,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"032_009","label":"SNPs","pAvg":0.00246,"pSD":0.00779,"pScaled":0.01098,"pRank":28,"nSamples":500,"individualID.1":32,"individualID.2":9,"transmission":false,"snpDist":15,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":1169,"infectionDiff":797,"infectionDiffY":2.18356,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"032_014","label":"SNPs","pAvg":0.0362,"pSD":0.00826,"pScaled":0.01988,"pRank":14,"nSamples":50,"individualID.1":32,"individualID.2":14,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":-801,"infectionDiff":375,"infectionDiffY":1.0274,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"032_017","label":"SNPs","pAvg":0.0065,"pSD":0.02004,"pScaled":0.00906,"pRank":23,"nSamples":500,"individualID.1":32,"individualID.2":17,"transmission":false,"snpDist":11,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":337,"infectionDiff":147,"infectionDiffY":0.40274,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"032_018","label":"SNPs","pAvg":0.05643,"pSD":0.01557,"pScaled":0.06397,"pRank":3,"nSamples":500,"individualID.1":32,"individualID.2":18,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":-908,"infectionDiff":572,"infectionDiffY":1.56712,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"032_021","label":"SNPs","pAvg":0.03394,"pSD":0.00809,"pScaled":0.0324,"pRank":16,"nSamples":500,"individualID.1":32,"individualID.2":21,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":537,"infectionDiff":569,"infectionDiffY":1.5589,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"032_023","label":"SNPs","pAvg":0.00892,"pSD":0.0029,"pScaled":0.00397,"pRank":47,"nSamples":50,"individualID.1":32,"individualID.2":23,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1326,"infectionDiff":2337,"infectionDiffY":6.40274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"032_026","label":"SNPs","pAvg":0.00393,"pSD":0.00177,"pScaled":0.00138,"pRank":51,"nSamples":50,"individualID.1":32,"individualID.2":26,"transmission":false,"snpDist":10,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":930,"infectionDiff":1633,"infectionDiffY":4.47397,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"032_027","label":"SNPs","pAvg":0.0079,"pSD":0.00233,"pScaled":0.00282,"pRank":52,"nSamples":50,"individualID.1":32,"individualID.2":27,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1102,"infectionDiff":2223,"infectionDiffY":6.09041,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"032_028","label":"SNPs","pAvg":0.03439,"pSD":0.01179,"pScaled":0.00961,"pRank":21,"nSamples":50,"individualID.1":32,"individualID.2":28,"transmission":false,"snpDist":9,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":319,"infectionDiff":1047,"infectionDiffY":2.86849,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"032_030","label":"SNPs","pAvg":0.02778,"pSD":0.00734,"pScaled":0.01942,"pRank":8,"nSamples":50,"individualID.1":32,"individualID.2":30,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":-1430,"infectionDiff":54,"infectionDiffY":0.14795,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"032_033","label":"SNPs","pAvg":0.00379,"pSD":0.00116,"pScaled":0.00173,"pRank":49,"nSamples":50,"individualID.1":32,"individualID.2":33,"transmission":false,"snpDist":4,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":547,"infectionDiff":1905,"infectionDiffY":5.21918,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"032_035","label":"SNPs","pAvg":0.0591,"pSD":0.01603,"pScaled":0.01536,"pRank":8,"nSamples":50,"individualID.1":32,"individualID.2":35,"transmission":false,"snpDist":9,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":509,"infectionDiff":702,"infectionDiffY":1.92329,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"032_036","label":"SNPs","pAvg":0.01121,"pSD":0.00484,"pScaled":0.00303,"pRank":41,"nSamples":50,"individualID.1":32,"individualID.2":36,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":308,"infectionDiff":1512,"infectionDiffY":4.14247,"timeCat":"5","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"032_037","label":"SNPs","pAvg":0.01973,"pSD":0.0064,"pScaled":0.0199,"pRank":18,"nSamples":500,"individualID.1":32,"individualID.2":37,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":695,"infectionDiff":1035,"infectionDiffY":2.83562,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"032_038","label":"SNPs","pAvg":0.02049,"pSD":0.0054,"pScaled":0.02433,"pRank":13,"nSamples":500,"individualID.1":32,"individualID.2":38,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":-243,"infectionDiff":679,"infectionDiffY":1.86027,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"032_039","label":"SNPs","pAvg":0.00269,"pSD":0.00832,"pScaled":0.0058,"pRank":23,"nSamples":500,"individualID.1":32,"individualID.2":39,"transmission":false,"snpDist":15,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":-78,"infectionDiff":125,"infectionDiffY":0.34247,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"032_040","label":"SNPs","pAvg":0.00631,"pSD":0.00303,"pScaled":0.00565,"pRank":49,"nSamples":500,"individualID.1":32,"individualID.2":40,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":331,"infectionDiff":1768,"infectionDiffY":4.84384,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"032_043","label":"SNPs","pAvg":0.08329,"pSD":0.02191,"pScaled":0.11241,"pRank":1,"nSamples":500,"individualID.1":32,"individualID.2":43,"transmission":true,"snpDist":5,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":1305,"infectionDiff":388,"infectionDiffY":1.06301,"timeCat":"2","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"032_044","label":"SNPs","pAvg":0.71698,"pSD":0.43431,"pScaled":0.1929,"pRank":1,"nSamples":167,"individualID.1":32,"individualID.2":44,"transmission":true,"snpDist":2,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":-1074,"infectionDiff":289,"infectionDiffY":0.79178,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":true} {"pairID":"032_045","label":"SNPs","pAvg":0.02225,"pSD":0.00693,"pScaled":0.01347,"pRank":13,"nSamples":50,"individualID.1":32,"individualID.2":45,"transmission":true,"snpDist":3,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":704,"infectionDiff":1279,"infectionDiffY":3.50411,"timeCat":"4","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"032_046","label":"SNPs","pAvg":0.0369,"pSD":0.00809,"pScaled":0.02134,"pRank":10,"nSamples":50,"individualID.1":32,"individualID.2":46,"transmission":true,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":-391,"infectionDiff":234,"infectionDiffY":0.6411,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"032_047","label":"SNPs","pAvg":0.58801,"pSD":0.46468,"pScaled":0.12683,"pRank":4,"nSamples":113,"individualID.1":32,"individualID.2":47,"transmission":true,"snpDist":1,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":-445,"infectionDiff":965,"infectionDiffY":2.64384,"timeCat":"3","Z1":"1","Z2":"1","Z3":"2","Z4":"1","snpClose":true} {"pairID":"032_048","label":"SNPs","pAvg":0.06108,"pSD":0.01599,"pScaled":0.02693,"pRank":4,"nSamples":50,"individualID.1":32,"individualID.2":48,"transmission":true,"snpDist":4,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":-162,"infectionDiff":499,"infectionDiffY":1.36712,"timeCat":"2","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"032_049","label":"SNPs","pAvg":0.04112,"pSD":0.01055,"pScaled":0.02693,"pRank":8,"nSamples":50,"individualID.1":32,"individualID.2":49,"transmission":true,"snpDist":4,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":-427,"infectionDiff":117,"infectionDiffY":0.32055,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"032_051","label":"SNPs","pAvg":0.06321,"pSD":0.02007,"pScaled":0.02994,"pRank":6,"nSamples":50,"individualID.1":32,"individualID.2":51,"transmission":false,"snpDist":10,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-658,"infectionDiff":757,"infectionDiffY":2.07397,"timeCat":"3","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"032_052","label":"SNPs","pAvg":0.00042,"pSD":0.00142,"pScaled":0.00016,"pRank":66,"nSamples":500,"individualID.1":32,"individualID.2":52,"transmission":false,"snpDist":11,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1175,"infectionDiff":1784,"infectionDiffY":4.88767,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"032_053","label":"SNPs","pAvg":0.00083,"pSD":0.00269,"pScaled":0.00055,"pRank":50,"nSamples":500,"individualID.1":32,"individualID.2":53,"transmission":false,"snpDist":13,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":-138,"infectionDiff":1249,"infectionDiffY":3.42192,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"032_054","label":"SNPs","pAvg":0.00404,"pSD":0.00121,"pScaled":0.00105,"pRank":55,"nSamples":50,"individualID.1":32,"individualID.2":54,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1033,"infectionDiff":2173,"infectionDiffY":5.95342,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"032_055","label":"SNPs","pAvg":0.00293,"pSD":0.00935,"pScaled":0.0009,"pRank":44,"nSamples":500,"individualID.1":32,"individualID.2":55,"transmission":false,"snpDist":13,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":16,"infectionDiff":1441,"infectionDiffY":3.94795,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"032_056","label":"SNPs","pAvg":0.00044,"pSD":0.00144,"pScaled":0.0001,"pRank":60,"nSamples":500,"individualID.1":32,"individualID.2":56,"transmission":false,"snpDist":13,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":440,"infectionDiff":1525,"infectionDiffY":4.17808,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"032_057","label":"SNPs","pAvg":0.00045,"pSD":0.00139,"pScaled":0.00009,"pRank":69,"nSamples":500,"individualID.1":32,"individualID.2":57,"transmission":false,"snpDist":14,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1003,"infectionDiff":2175,"infectionDiffY":5.9589,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"032_058","label":"SNPs","pAvg":0.00445,"pSD":0.00123,"pScaled":0.00439,"pRank":45,"nSamples":500,"individualID.1":32,"individualID.2":58,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1288,"infectionDiff":1864,"infectionDiffY":5.10685,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"032_059","label":"SNPs","pAvg":0.11803,"pSD":0.02106,"pScaled":0.16966,"pRank":1,"nSamples":500,"individualID.1":32,"individualID.2":59,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":668,"infectionDiff":328,"infectionDiffY":0.89863,"timeCat":"1","Z1":"1","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"032_060","label":"SNPs","pAvg":0.00069,"pSD":0.00218,"pScaled":0.00033,"pRank":82,"nSamples":500,"individualID.1":32,"individualID.2":60,"transmission":false,"snpDist":13,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1330,"infectionDiff":2506,"infectionDiffY":6.86575,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"032_061","label":"SNPs","pAvg":0.00015,"pSD":0.00049,"pScaled":0.00028,"pRank":64,"nSamples":500,"individualID.1":32,"individualID.2":61,"transmission":false,"snpDist":12,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1123,"infectionDiff":1724,"infectionDiffY":4.72329,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"032_062","label":"SNPs","pAvg":0.09712,"pSD":0.02483,"pScaled":0.02571,"pRank":6,"nSamples":50,"individualID.1":32,"individualID.2":62,"transmission":false,"snpDist":3,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":-142,"infectionDiff":628,"infectionDiffY":1.72055,"timeCat":"2","Z1":"1","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"032_063","label":"SNPs","pAvg":0.02045,"pSD":0.005,"pScaled":0.00984,"pRank":11,"nSamples":50,"individualID.1":32,"individualID.2":63,"transmission":false,"snpDist":4,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":-711,"infectionDiff":423,"infectionDiffY":1.1589,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"032_064","label":"SNPs","pAvg":0.00129,"pSD":0.00415,"pScaled":0.00049,"pRank":44,"nSamples":500,"individualID.1":32,"individualID.2":64,"transmission":false,"snpDist":14,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":72,"infectionDiff":1405,"infectionDiffY":3.84932,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"032_065","label":"SNPs","pAvg":0.00351,"pSD":0.00126,"pScaled":0.00271,"pRank":26,"nSamples":50,"individualID.1":32,"individualID.2":65,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":80,"infectionDiff":1338,"infectionDiffY":3.66575,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"032_066","label":"SNPs","pAvg":0.00102,"pSD":0.00342,"pScaled":0.00027,"pRank":54,"nSamples":500,"individualID.1":32,"individualID.2":66,"transmission":false,"snpDist":14,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":227,"infectionDiff":1484,"infectionDiffY":4.06575,"timeCat":"5","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"032_067","label":"SNPs","pAvg":0.00483,"pSD":0.00136,"pScaled":0.00122,"pRank":56,"nSamples":50,"individualID.1":32,"individualID.2":67,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1349,"infectionDiff":2570,"infectionDiffY":7.0411,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"032_068","label":"SNPs","pAvg":0.01127,"pSD":0.00293,"pScaled":0.00246,"pRank":30,"nSamples":50,"individualID.1":32,"individualID.2":68,"transmission":false,"snpDist":10,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":955,"infectionDiff":2222,"infectionDiffY":6.08767,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"032_069","label":"SNPs","pAvg":0.00129,"pSD":0.00046,"pScaled":0.00041,"pRank":76,"nSamples":50,"individualID.1":32,"individualID.2":69,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1000,"infectionDiff":2248,"infectionDiffY":6.1589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"032_070","label":"SNPs","pAvg":0.03415,"pSD":0.00767,"pScaled":0.01057,"pRank":16,"nSamples":50,"individualID.1":32,"individualID.2":70,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":-464,"infectionDiff":666,"infectionDiffY":1.82466,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"032_071","label":"SNPs","pAvg":0.02462,"pSD":0.00606,"pScaled":0.02505,"pRank":19,"nSamples":500,"individualID.1":32,"individualID.2":71,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":1055,"infectionDiff":925,"infectionDiffY":2.53425,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"032_072","label":"SNPs","pAvg":0.02583,"pSD":0.00841,"pScaled":0.00786,"pRank":12,"nSamples":50,"individualID.1":32,"individualID.2":72,"transmission":false,"snpDist":4,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":-504,"infectionDiff":844,"infectionDiffY":2.31233,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"032_073","label":"SNPs","pAvg":0.00018,"pSD":0.00059,"pScaled":0.00013,"pRank":62,"nSamples":500,"individualID.1":32,"individualID.2":73,"transmission":false,"snpDist":12,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":577,"infectionDiff":1595,"infectionDiffY":4.36986,"timeCat":"5","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"032_074","label":"SNPs","pAvg":0.00515,"pSD":0.00152,"pScaled":0.00282,"pRank":18,"nSamples":50,"individualID.1":32,"individualID.2":74,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":417,"infectionDiff":975,"infectionDiffY":2.67123,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"032_075","label":"SNPs","pAvg":0.00014,"pSD":0.00045,"pScaled":0.0006,"pRank":93,"nSamples":500,"individualID.1":32,"individualID.2":75,"transmission":false,"snpDist":17,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1083,"infectionDiff":2548,"infectionDiffY":6.98082,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"032_076","label":"SNPs","pAvg":0.00732,"pSD":0.0022,"pScaled":0.00179,"pRank":49,"nSamples":50,"individualID.1":32,"individualID.2":76,"transmission":false,"snpDist":10,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1318,"infectionDiff":2222,"infectionDiffY":6.08767,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"032_077","label":"SNPs","pAvg":0.0043,"pSD":0.00111,"pScaled":0.00095,"pRank":56,"nSamples":50,"individualID.1":32,"individualID.2":77,"transmission":false,"snpDist":9,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":471,"infectionDiff":1937,"infectionDiffY":5.30685,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"032_078","label":"SNPs","pAvg":0.00644,"pSD":0.00192,"pScaled":0.00143,"pRank":69,"nSamples":50,"individualID.1":32,"individualID.2":78,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1162,"infectionDiff":2250,"infectionDiffY":6.16438,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"032_079","label":"SNPs","pAvg":0.00456,"pSD":0.00199,"pScaled":0.00229,"pRank":24,"nSamples":50,"individualID.1":32,"individualID.2":79,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":570,"infectionDiff":1533,"infectionDiffY":4.2,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"032_080","label":"SNPs","pAvg":0.00023,"pSD":0.00077,"pScaled":0.00171,"pRank":50,"nSamples":500,"individualID.1":32,"individualID.2":80,"transmission":false,"snpDist":14,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":579,"infectionDiff":1465,"infectionDiffY":4.0137,"timeCat":"5","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"032_081","label":"SNPs","pAvg":0.00205,"pSD":0.00065,"pScaled":0.00051,"pRank":74,"nSamples":50,"individualID.1":32,"individualID.2":81,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1295,"infectionDiff":2632,"infectionDiffY":7.21096,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"032_082","label":"SNPs","pAvg":0.00072,"pSD":0.00227,"pScaled":0.00016,"pRank":93,"nSamples":500,"individualID.1":32,"individualID.2":82,"transmission":false,"snpDist":11,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1299,"infectionDiff":2710,"infectionDiffY":7.42466,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"032_083","label":"SNPs","pAvg":0.0118,"pSD":0.00334,"pScaled":0.00459,"pRank":26,"nSamples":50,"individualID.1":32,"individualID.2":83,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1075,"infectionDiff":2179,"infectionDiffY":5.96986,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"032_084","label":"SNPs","pAvg":0.00472,"pSD":0.00133,"pScaled":0.00238,"pRank":18,"nSamples":50,"individualID.1":32,"individualID.2":84,"transmission":false,"snpDist":8,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1318,"infectionDiff":2227,"infectionDiffY":6.10137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"032_085","label":"SNPs","pAvg":0.00388,"pSD":0.00105,"pScaled":0.00133,"pRank":22,"nSamples":50,"individualID.1":32,"individualID.2":85,"transmission":false,"snpDist":6,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":430,"infectionDiff":1892,"infectionDiffY":5.18356,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"032_086","label":"SNPs","pAvg":0.00012,"pSD":0.00043,"pScaled":0.00004,"pRank":59,"nSamples":500,"individualID.1":32,"individualID.2":86,"transmission":false,"snpDist":11,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":268,"infectionDiff":1521,"infectionDiffY":4.16712,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"032_087","label":"SNPs","pAvg":0.00024,"pSD":0.00077,"pScaled":0.0002,"pRank":60,"nSamples":500,"individualID.1":32,"individualID.2":87,"transmission":false,"snpDist":15,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":803,"infectionDiff":2060,"infectionDiffY":5.64384,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"032_088","label":"SNPs","pAvg":0.00648,"pSD":0.00228,"pScaled":0.00125,"pRank":53,"nSamples":50,"individualID.1":32,"individualID.2":88,"transmission":false,"snpDist":10,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":912,"infectionDiff":2395,"infectionDiffY":6.56164,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"032_089","label":"SNPs","pAvg":0.00414,"pSD":0.00127,"pScaled":0.00133,"pRank":22,"nSamples":50,"individualID.1":32,"individualID.2":89,"transmission":false,"snpDist":7,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1204,"infectionDiff":2231,"infectionDiffY":6.11233,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"032_090","label":"SNPs","pAvg":0.00417,"pSD":0.00111,"pScaled":0.00108,"pRank":38,"nSamples":50,"individualID.1":32,"individualID.2":90,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1275,"infectionDiff":2457,"infectionDiffY":6.73151,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"032_091","label":"SNPs","pAvg":0.00704,"pSD":0.0021,"pScaled":0.00353,"pRank":18,"nSamples":50,"individualID.1":32,"individualID.2":91,"transmission":false,"snpDist":7,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1296,"infectionDiff":2049,"infectionDiffY":5.6137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"032_092","label":"SNPs","pAvg":0.00475,"pSD":0.00121,"pScaled":0.00193,"pRank":13,"nSamples":50,"individualID.1":32,"individualID.2":92,"transmission":false,"snpDist":7,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1343,"infectionDiff":2200,"infectionDiffY":6.0274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"032_093","label":"SNPs","pAvg":0.00656,"pSD":0.00184,"pScaled":0.00178,"pRank":15,"nSamples":50,"individualID.1":32,"individualID.2":93,"transmission":false,"snpDist":8,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1180,"infectionDiff":2425,"infectionDiffY":6.64384,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"032_094","label":"SNPs","pAvg":0.00159,"pSD":0.00047,"pScaled":0.00052,"pRank":67,"nSamples":50,"individualID.1":32,"individualID.2":94,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1226,"infectionDiff":2697,"infectionDiffY":7.38904,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"032_095","label":"SNPs","pAvg":0.00024,"pSD":0.00077,"pScaled":0.00012,"pRank":59,"nSamples":500,"individualID.1":32,"individualID.2":95,"transmission":false,"snpDist":15,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":808,"infectionDiff":2129,"infectionDiffY":5.83288,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"032_096","label":"SNPs","pAvg":0.00161,"pSD":0.00057,"pScaled":0.00056,"pRank":59,"nSamples":50,"individualID.1":32,"individualID.2":96,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":903,"infectionDiff":2361,"infectionDiffY":6.46849,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"032_097","label":"SNPs","pAvg":0.00711,"pSD":0.00206,"pScaled":0.00159,"pRank":40,"nSamples":50,"individualID.1":32,"individualID.2":97,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1146,"infectionDiff":2517,"infectionDiffY":6.89589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"032_098","label":"SNPs","pAvg":0.00392,"pSD":0.00128,"pScaled":0.00111,"pRank":25,"nSamples":50,"individualID.1":32,"individualID.2":98,"transmission":false,"snpDist":7,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":965,"infectionDiff":2290,"infectionDiffY":6.27397,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"032_099","label":"SNPs","pAvg":0.00015,"pSD":0.00047,"pScaled":0.00005,"pRank":72,"nSamples":500,"individualID.1":32,"individualID.2":99,"transmission":false,"snpDist":12,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":947,"infectionDiff":2154,"infectionDiffY":5.90137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"032_100","label":"SNPs","pAvg":0.00879,"pSD":0.00225,"pScaled":0.00259,"pRank":46,"nSamples":50,"individualID.1":32,"individualID.2":100,"transmission":false,"infectionDate.1":"1992-02-28 04:07:48","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1996-04-14 23:45:54","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1147,"infectionDiff":2532,"infectionDiffY":6.93699,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"033_023","label":"SNPs","pAvg":0.00282,"pSD":0.00873,"pScaled":0.00125,"pRank":69,"nSamples":500,"individualID.1":33,"individualID.2":23,"transmission":false,"snpDist":11,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":779,"infectionDiff":432,"infectionDiffY":1.18356,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"033_027","label":"SNPs","pAvg":0.02758,"pSD":0.00584,"pScaled":0.00985,"pRank":13,"nSamples":50,"individualID.1":33,"individualID.2":27,"transmission":false,"snpDist":9,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":556,"infectionDiff":318,"infectionDiffY":0.87123,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"033_054","label":"SNPs","pAvg":0.0094,"pSD":0.02863,"pScaled":0.00245,"pRank":20,"nSamples":500,"individualID.1":33,"individualID.2":54,"transmission":false,"snpDist":13,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":486,"infectionDiff":269,"infectionDiffY":0.73699,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"033_057","label":"SNPs","pAvg":0.00457,"pSD":0.01407,"pScaled":0.00091,"pRank":41,"nSamples":500,"individualID.1":33,"individualID.2":57,"transmission":false,"snpDist":14,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":457,"infectionDiff":271,"infectionDiffY":0.74247,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"033_060","label":"SNPs","pAvg":0.0025,"pSD":0.0078,"pScaled":0.00121,"pRank":65,"nSamples":500,"individualID.1":33,"individualID.2":60,"transmission":false,"snpDist":13,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":783,"infectionDiff":601,"infectionDiffY":1.64658,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"033_067","label":"SNPs","pAvg":0.00343,"pSD":0.01059,"pScaled":0.00086,"pRank":66,"nSamples":500,"individualID.1":33,"individualID.2":67,"transmission":false,"snpDist":15,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":802,"infectionDiff":665,"infectionDiffY":1.82192,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"033_068","label":"SNPs","pAvg":0.05583,"pSD":0.01265,"pScaled":0.0122,"pRank":8,"nSamples":50,"individualID.1":33,"individualID.2":68,"transmission":false,"snpDist":10,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":409,"infectionDiff":317,"infectionDiffY":0.86849,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"033_069","label":"SNPs","pAvg":0.00585,"pSD":0.01798,"pScaled":0.00187,"pRank":28,"nSamples":500,"individualID.1":33,"individualID.2":69,"transmission":false,"snpDist":11,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":453,"infectionDiff":344,"infectionDiffY":0.94247,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"033_075","label":"SNPs","pAvg":0.00087,"pSD":0.00272,"pScaled":0.00379,"pRank":44,"nSamples":500,"individualID.1":33,"individualID.2":75,"transmission":false,"snpDist":17,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":537,"infectionDiff":644,"infectionDiffY":1.76438,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"033_076","label":"SNPs","pAvg":0.05171,"pSD":0.01,"pScaled":0.01267,"pRank":6,"nSamples":50,"individualID.1":33,"individualID.2":76,"transmission":false,"snpDist":10,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":771,"infectionDiff":317,"infectionDiffY":0.86849,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"033_077","label":"SNPs","pAvg":0.04437,"pSD":0.00854,"pScaled":0.00982,"pRank":11,"nSamples":50,"individualID.1":33,"individualID.2":77,"transmission":false,"snpDist":9,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":-76,"infectionDiff":32,"infectionDiffY":0.08767,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"033_078","label":"SNPs","pAvg":0.03073,"pSD":0.00616,"pScaled":0.0068,"pRank":19,"nSamples":50,"individualID.1":33,"individualID.2":78,"transmission":false,"snpDist":9,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":615,"infectionDiff":345,"infectionDiffY":0.94521,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"033_081","label":"SNPs","pAvg":0.00867,"pSD":0.00205,"pScaled":0.00216,"pRank":29,"nSamples":50,"individualID.1":33,"individualID.2":81,"transmission":false,"snpDist":9,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":748,"infectionDiff":728,"infectionDiffY":1.99452,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"033_082","label":"SNPs","pAvg":0.00295,"pSD":0.00926,"pScaled":0.00064,"pRank":85,"nSamples":500,"individualID.1":33,"individualID.2":82,"transmission":false,"snpDist":11,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":752,"infectionDiff":805,"infectionDiffY":2.20548,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"033_083","label":"SNPs","pAvg":0.00292,"pSD":0.00908,"pScaled":0.00114,"pRank":69,"nSamples":500,"individualID.1":33,"individualID.2":83,"transmission":false,"snpDist":11,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":528,"infectionDiff":275,"infectionDiffY":0.75342,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"033_084","label":"SNPs","pAvg":0.01861,"pSD":0.00413,"pScaled":0.00939,"pRank":5,"nSamples":50,"individualID.1":33,"individualID.2":84,"transmission":false,"snpDist":8,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":771,"infectionDiff":323,"infectionDiffY":0.88493,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"033_087","label":"SNPs","pAvg":0.00569,"pSD":0.01758,"pScaled":0.00464,"pRank":15,"nSamples":500,"individualID.1":33,"individualID.2":87,"transmission":false,"snpDist":14,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":256,"infectionDiff":155,"infectionDiffY":0.42466,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"033_088","label":"SNPs","pAvg":0.02449,"pSD":0.00691,"pScaled":0.00474,"pRank":17,"nSamples":50,"individualID.1":33,"individualID.2":88,"transmission":false,"snpDist":10,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":366,"infectionDiff":490,"infectionDiffY":1.34247,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"033_089","label":"SNPs","pAvg":0.02158,"pSD":0.00471,"pScaled":0.00692,"pRank":6,"nSamples":50,"individualID.1":33,"individualID.2":89,"transmission":false,"snpDist":7,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":657,"infectionDiff":326,"infectionDiffY":0.89315,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"033_090","label":"SNPs","pAvg":0.01649,"pSD":0.00443,"pScaled":0.00428,"pRank":17,"nSamples":50,"individualID.1":33,"individualID.2":90,"transmission":false,"snpDist":8,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":728,"infectionDiff":553,"infectionDiffY":1.51507,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"033_091","label":"SNPs","pAvg":0.05554,"pSD":0.01073,"pScaled":0.02784,"pRank":3,"nSamples":50,"individualID.1":33,"individualID.2":91,"transmission":false,"snpDist":7,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":749,"infectionDiff":144,"infectionDiffY":0.39452,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"033_092","label":"SNPs","pAvg":0.01792,"pSD":0.00396,"pScaled":0.00727,"pRank":4,"nSamples":50,"individualID.1":33,"individualID.2":92,"transmission":false,"snpDist":7,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":796,"infectionDiff":295,"infectionDiffY":0.80822,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"033_093","label":"SNPs","pAvg":0.01824,"pSD":0.00511,"pScaled":0.00496,"pRank":8,"nSamples":50,"individualID.1":33,"individualID.2":93,"transmission":false,"snpDist":8,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":633,"infectionDiff":521,"infectionDiffY":1.4274,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"033_094","label":"SNPs","pAvg":0.00159,"pSD":0.00497,"pScaled":0.00052,"pRank":66,"nSamples":500,"individualID.1":33,"individualID.2":94,"transmission":false,"snpDist":14,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":679,"infectionDiff":792,"infectionDiffY":2.16986,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"033_095","label":"SNPs","pAvg":0.00564,"pSD":0.01752,"pScaled":0.00287,"pRank":16,"nSamples":500,"individualID.1":33,"individualID.2":95,"transmission":false,"snpDist":14,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":261,"infectionDiff":224,"infectionDiffY":0.6137,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"033_096","label":"SNPs","pAvg":0.00411,"pSD":0.01268,"pScaled":0.00144,"pRank":34,"nSamples":500,"individualID.1":33,"individualID.2":96,"transmission":false,"snpDist":14,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":356,"infectionDiff":456,"infectionDiffY":1.24932,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"033_097","label":"SNPs","pAvg":0.04419,"pSD":0.01124,"pScaled":0.0099,"pRank":13,"nSamples":50,"individualID.1":33,"individualID.2":97,"transmission":false,"snpDist":7,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":599,"infectionDiff":612,"infectionDiffY":1.67671,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"033_098","label":"SNPs","pAvg":0.00876,"pSD":0.00262,"pScaled":0.00249,"pRank":11,"nSamples":50,"individualID.1":33,"individualID.2":98,"transmission":false,"snpDist":7,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":418,"infectionDiff":385,"infectionDiffY":1.05479,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"033_099","label":"SNPs","pAvg":0.00272,"pSD":0.00833,"pScaled":0.00093,"pRank":43,"nSamples":500,"individualID.1":33,"individualID.2":99,"transmission":false,"snpDist":11,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":401,"infectionDiff":249,"infectionDiffY":0.68219,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"033_100","label":"SNPs","pAvg":0.00346,"pSD":0.01066,"pScaled":0.00102,"pRank":72,"nSamples":500,"individualID.1":33,"individualID.2":100,"transmission":false,"snpDist":11,"infectionDate.1":"1997-05-16 16:31:02","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1997-10-13 18:53:18","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":600,"infectionDiff":627,"infectionDiffY":1.71781,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"034_006","label":"SNPs","pAvg":0.0175,"pSD":0.00521,"pScaled":0.01118,"pRank":14,"nSamples":50,"individualID.1":34,"individualID.2":6,"transmission":false,"snpDist":10,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":-924,"infectionDiff":496,"infectionDiffY":1.3589,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"034_009","label":"SNPs","pAvg":0.0004,"pSD":0.00127,"pScaled":0.0018,"pRank":44,"nSamples":500,"individualID.1":34,"individualID.2":9,"transmission":false,"snpDist":16,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":1600,"infectionDiff":1179,"infectionDiffY":3.23014,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"034_010","label":"SNPs","pAvg":0.0267,"pSD":0.00581,"pScaled":0.01934,"pRank":9,"nSamples":50,"individualID.1":34,"individualID.2":10,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":-949,"infectionDiff":219,"infectionDiffY":0.6,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"034_014","label":"SNPs","pAvg":0.02822,"pSD":0.00834,"pScaled":0.0155,"pRank":17,"nSamples":50,"individualID.1":34,"individualID.2":14,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":-370,"infectionDiff":756,"infectionDiffY":2.07123,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"034_017","label":"SNPs","pAvg":0.00421,"pSD":0.01307,"pScaled":0.00588,"pRank":29,"nSamples":500,"individualID.1":34,"individualID.2":17,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":768,"infectionDiff":528,"infectionDiffY":1.44658,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"034_018","label":"SNPs","pAvg":0.00176,"pSD":0.00561,"pScaled":0.002,"pRank":38,"nSamples":500,"individualID.1":34,"individualID.2":18,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":-477,"infectionDiff":953,"infectionDiffY":2.61096,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"034_021","label":"SNPs","pAvg":0.02929,"pSD":0.00841,"pScaled":0.02796,"pRank":17,"nSamples":500,"individualID.1":34,"individualID.2":21,"transmission":false,"snpDist":10,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":968,"infectionDiff":950,"infectionDiffY":2.60274,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"034_023","label":"SNPs","pAvg":0.0011,"pSD":0.00339,"pScaled":0.00049,"pRank":78,"nSamples":500,"individualID.1":34,"individualID.2":23,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1757,"infectionDiff":2718,"infectionDiffY":7.44658,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"034_026","label":"SNPs","pAvg":0.00031,"pSD":0.00098,"pScaled":0.00011,"pRank":63,"nSamples":500,"individualID.1":34,"individualID.2":26,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1361,"infectionDiff":2014,"infectionDiffY":5.51781,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"034_027","label":"SNPs","pAvg":0.00891,"pSD":0.00193,"pScaled":0.00318,"pRank":42,"nSamples":50,"individualID.1":34,"individualID.2":27,"transmission":false,"snpDist":10,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1533,"infectionDiff":2604,"infectionDiffY":7.13425,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"034_028","label":"SNPs","pAvg":0.02357,"pSD":0.0069,"pScaled":0.00658,"pRank":25,"nSamples":50,"individualID.1":34,"individualID.2":28,"transmission":false,"snpDist":10,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":750,"infectionDiff":1428,"infectionDiffY":3.91233,"timeCat":"4","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"034_030","label":"SNPs","pAvg":0.01315,"pSD":0.00358,"pScaled":0.0092,"pRank":15,"nSamples":50,"individualID.1":34,"individualID.2":30,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":-999,"infectionDiff":435,"infectionDiffY":1.19178,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"034_032","label":"SNPs","pAvg":0.00195,"pSD":0.00599,"pScaled":0.00133,"pRank":24,"nSamples":500,"individualID.1":34,"individualID.2":32,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":431,"infectionDiff":381,"infectionDiffY":1.04384,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"034_033","label":"SNPs","pAvg":0.00018,"pSD":0.00056,"pScaled":0.00008,"pRank":69,"nSamples":500,"individualID.1":34,"individualID.2":33,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":978,"infectionDiff":2286,"infectionDiffY":6.26301,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"034_035","label":"SNPs","pAvg":0.01689,"pSD":0.00561,"pScaled":0.00439,"pRank":26,"nSamples":50,"individualID.1":34,"individualID.2":35,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":940,"infectionDiff":1083,"infectionDiffY":2.96712,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"034_036","label":"SNPs","pAvg":0.00894,"pSD":0.00195,"pScaled":0.00242,"pRank":46,"nSamples":50,"individualID.1":34,"individualID.2":36,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":739,"infectionDiff":1894,"infectionDiffY":5.18904,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"034_037","label":"SNPs","pAvg":0.00829,"pSD":0.00272,"pScaled":0.00836,"pRank":29,"nSamples":500,"individualID.1":34,"individualID.2":37,"transmission":false,"snpDist":10,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":1126,"infectionDiff":1416,"infectionDiffY":3.87945,"timeCat":"4","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"034_038","label":"SNPs","pAvg":0.00105,"pSD":0.00335,"pScaled":0.00125,"pRank":39,"nSamples":500,"individualID.1":34,"individualID.2":38,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":188,"infectionDiff":1060,"infectionDiffY":2.90411,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"034_039","label":"SNPs","pAvg":0.00145,"pSD":0.00451,"pScaled":0.00312,"pRank":25,"nSamples":500,"individualID.1":34,"individualID.2":39,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":353,"infectionDiff":506,"infectionDiffY":1.3863,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"034_040","label":"SNPs","pAvg":0.01012,"pSD":0.00244,"pScaled":0.00905,"pRank":29,"nSamples":500,"individualID.1":34,"individualID.2":40,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":762,"infectionDiff":2150,"infectionDiffY":5.89041,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"034_041","label":"SNPs","pAvg":0.02144,"pSD":0.00462,"pScaled":0.05564,"pRank":6,"nSamples":500,"individualID.1":34,"individualID.2":41,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":1611,"infectionDiff":350,"infectionDiffY":0.9589,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"034_042","label":"SNPs","pAvg":0.05759,"pSD":0.01197,"pScaled":0.02126,"pRank":4,"nSamples":50,"individualID.1":34,"individualID.2":42,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1991-02-13 20:50:44","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1992-05-29 17:55:20","sampleDiff":-985,"infectionDiff":2,"infectionDiffY":0.00548,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"034_043","label":"SNPs","pAvg":0.00187,"pSD":0.00581,"pScaled":0.00252,"pRank":34,"nSamples":500,"individualID.1":34,"individualID.2":43,"transmission":false,"snpDist":14,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":1737,"infectionDiff":769,"infectionDiffY":2.10685,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"034_044","label":"SNPs","pAvg":0.00254,"pSD":0.00787,"pScaled":0.00068,"pRank":30,"nSamples":500,"individualID.1":34,"individualID.2":44,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":-643,"infectionDiff":670,"infectionDiffY":1.83562,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"034_045","label":"SNPs","pAvg":0.00021,"pSD":0.0007,"pScaled":0.00013,"pRank":51,"nSamples":500,"individualID.1":34,"individualID.2":45,"transmission":false,"snpDist":14,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":1135,"infectionDiff":1660,"infectionDiffY":4.54795,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"034_046","label":"SNPs","pAvg":0.00164,"pSD":0.00512,"pScaled":0.00095,"pRank":30,"nSamples":500,"individualID.1":34,"individualID.2":46,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":40,"infectionDiff":615,"infectionDiffY":1.68493,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"034_047","label":"SNPs","pAvg":0.00105,"pSD":0.00335,"pScaled":0.00023,"pRank":47,"nSamples":500,"individualID.1":34,"individualID.2":47,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":-14,"infectionDiff":1346,"infectionDiffY":3.68767,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"034_048","label":"SNPs","pAvg":0.00056,"pSD":0.00175,"pScaled":0.00025,"pRank":36,"nSamples":500,"individualID.1":34,"individualID.2":48,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":269,"infectionDiff":880,"infectionDiffY":2.41096,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"034_049","label":"SNPs","pAvg":0.00419,"pSD":0.01321,"pScaled":0.00274,"pRank":25,"nSamples":500,"individualID.1":34,"individualID.2":49,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":4,"infectionDiff":498,"infectionDiffY":1.36438,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"034_050","label":"SNPs","pAvg":0.04453,"pSD":0.00951,"pScaled":0.19445,"pRank":1,"nSamples":500,"individualID.1":34,"individualID.2":50,"transmission":true,"snpDist":7,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":-141,"infectionDiff":171,"infectionDiffY":0.46849,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"034_051","label":"SNPs","pAvg":0.01201,"pSD":0.00358,"pScaled":0.00569,"pRank":30,"nSamples":50,"individualID.1":34,"individualID.2":51,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-227,"infectionDiff":1138,"infectionDiffY":3.11781,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"034_052","label":"SNPs","pAvg":0.00332,"pSD":0.00098,"pScaled":0.00124,"pRank":53,"nSamples":50,"individualID.1":34,"individualID.2":52,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1606,"infectionDiff":2166,"infectionDiffY":5.93425,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"034_053","label":"SNPs","pAvg":0.00359,"pSD":0.0018,"pScaled":0.0024,"pRank":36,"nSamples":50,"individualID.1":34,"individualID.2":53,"transmission":false,"snpDist":10,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":293,"infectionDiff":1630,"infectionDiffY":4.46575,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"034_054","label":"SNPs","pAvg":0.00195,"pSD":0.00055,"pScaled":0.00051,"pRank":61,"nSamples":50,"individualID.1":34,"individualID.2":54,"transmission":false,"snpDist":10,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1464,"infectionDiff":2554,"infectionDiffY":6.99726,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"034_055","label":"SNPs","pAvg":0.00486,"pSD":0.00207,"pScaled":0.00149,"pRank":32,"nSamples":50,"individualID.1":34,"individualID.2":55,"transmission":false,"snpDist":10,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":448,"infectionDiff":1822,"infectionDiffY":4.99178,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"034_056","label":"SNPs","pAvg":0.00318,"pSD":0.0008,"pScaled":0.00076,"pRank":42,"nSamples":50,"individualID.1":34,"individualID.2":56,"transmission":false,"snpDist":10,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":871,"infectionDiff":1906,"infectionDiffY":5.22192,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"034_057","label":"SNPs","pAvg":0.00033,"pSD":0.00103,"pScaled":0.00007,"pRank":76,"nSamples":500,"individualID.1":34,"individualID.2":57,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1434,"infectionDiff":2556,"infectionDiffY":7.00274,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"034_058","label":"SNPs","pAvg":0.00031,"pSD":0.00095,"pScaled":0.0003,"pRank":67,"nSamples":500,"individualID.1":34,"individualID.2":58,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1719,"infectionDiff":2245,"infectionDiffY":6.15068,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"034_059","label":"SNPs","pAvg":0.00217,"pSD":0.00665,"pScaled":0.00312,"pRank":29,"nSamples":500,"individualID.1":34,"individualID.2":59,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":1099,"infectionDiff":709,"infectionDiffY":1.94247,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"034_060","label":"SNPs","pAvg":0.01019,"pSD":0.00203,"pScaled":0.00494,"pRank":29,"nSamples":50,"individualID.1":34,"individualID.2":60,"transmission":false,"snpDist":10,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1761,"infectionDiff":2887,"infectionDiffY":7.90959,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"034_061","label":"SNPs","pAvg":0.00162,"pSD":0.00047,"pScaled":0.00308,"pRank":41,"nSamples":500,"individualID.1":34,"individualID.2":61,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1554,"infectionDiff":2105,"infectionDiffY":5.76712,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"034_062","label":"SNPs","pAvg":0.00154,"pSD":0.00478,"pScaled":0.00041,"pRank":39,"nSamples":500,"individualID.1":34,"individualID.2":62,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":289,"infectionDiff":1009,"infectionDiffY":2.76438,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"034_063","label":"SNPs","pAvg":0.00469,"pSD":0.0147,"pScaled":0.00226,"pRank":21,"nSamples":500,"individualID.1":34,"individualID.2":63,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":-279,"infectionDiff":804,"infectionDiffY":2.20274,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"034_064","label":"SNPs","pAvg":0.00019,"pSD":0.00065,"pScaled":0.00007,"pRank":54,"nSamples":500,"individualID.1":34,"individualID.2":64,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":503,"infectionDiff":1786,"infectionDiffY":4.89315,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"034_065","label":"SNPs","pAvg":0.00312,"pSD":0.00156,"pScaled":0.0024,"pRank":28,"nSamples":50,"individualID.1":34,"individualID.2":65,"transmission":false,"snpDist":10,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":511,"infectionDiff":1719,"infectionDiffY":4.70959,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"034_066","label":"SNPs","pAvg":0.00107,"pSD":0.00335,"pScaled":0.00028,"pRank":52,"nSamples":500,"individualID.1":34,"individualID.2":66,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":658,"infectionDiff":1866,"infectionDiffY":5.11233,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"034_067","label":"SNPs","pAvg":0.00032,"pSD":0.00098,"pScaled":0.00008,"pRank":95,"nSamples":500,"individualID.1":34,"individualID.2":67,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1780,"infectionDiff":2951,"infectionDiffY":8.08493,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"034_068","label":"SNPs","pAvg":0.00453,"pSD":0.00108,"pScaled":0.00099,"pRank":70,"nSamples":50,"individualID.1":34,"individualID.2":68,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":1386,"infectionDiff":2603,"infectionDiffY":7.13151,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"034_069","label":"SNPs","pAvg":0.0017,"pSD":0.00046,"pScaled":0.00055,"pRank":58,"nSamples":50,"individualID.1":34,"individualID.2":69,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1431,"infectionDiff":2630,"infectionDiffY":7.20548,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"034_070","label":"SNPs","pAvg":0.00289,"pSD":0.00904,"pScaled":0.0009,"pRank":40,"nSamples":500,"individualID.1":34,"individualID.2":70,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":-32,"infectionDiff":1047,"infectionDiffY":2.86849,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"034_071","label":"SNPs","pAvg":0.00188,"pSD":0.00589,"pScaled":0.00191,"pRank":37,"nSamples":500,"individualID.1":34,"individualID.2":71,"transmission":false,"snpDist":17,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":1486,"infectionDiff":1306,"infectionDiffY":3.57808,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"034_072","label":"SNPs","pAvg":0.00181,"pSD":0.00575,"pScaled":0.00055,"pRank":37,"nSamples":500,"individualID.1":34,"individualID.2":72,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":-73,"infectionDiff":1225,"infectionDiffY":3.35616,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"034_073","label":"SNPs","pAvg":0.00393,"pSD":0.00119,"pScaled":0.00289,"pRank":25,"nSamples":50,"individualID.1":34,"individualID.2":73,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":1008,"infectionDiff":1976,"infectionDiffY":5.4137,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"034_074","label":"SNPs","pAvg":0.00333,"pSD":0.00124,"pScaled":0.00183,"pRank":23,"nSamples":50,"individualID.1":34,"individualID.2":74,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":848,"infectionDiff":1356,"infectionDiffY":3.71507,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"034_075","label":"SNPs","pAvg":0.00036,"pSD":0.00112,"pScaled":0.00156,"pRank":55,"nSamples":500,"individualID.1":34,"individualID.2":75,"transmission":false,"snpDist":14,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1514,"infectionDiff":2929,"infectionDiffY":8.02466,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"034_076","label":"SNPs","pAvg":0.00172,"pSD":0.00051,"pScaled":0.00042,"pRank":71,"nSamples":50,"individualID.1":34,"individualID.2":76,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1749,"infectionDiff":2603,"infectionDiffY":7.13151,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"034_077","label":"SNPs","pAvg":0.00144,"pSD":0.00039,"pScaled":0.00032,"pRank":68,"nSamples":50,"individualID.1":34,"individualID.2":77,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":902,"infectionDiff":2318,"infectionDiffY":6.35068,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"034_078","label":"SNPs","pAvg":0.01009,"pSD":0.0022,"pScaled":0.00223,"pRank":42,"nSamples":50,"individualID.1":34,"individualID.2":78,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1593,"infectionDiff":2631,"infectionDiffY":7.20822,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"034_079","label":"SNPs","pAvg":0.00075,"pSD":0.00232,"pScaled":0.00038,"pRank":55,"nSamples":500,"individualID.1":34,"individualID.2":79,"transmission":false,"snpDist":15,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":1001,"infectionDiff":1914,"infectionDiffY":5.24384,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"034_080","label":"SNPs","pAvg":0.00017,"pSD":0.00053,"pScaled":0.00124,"pRank":54,"nSamples":500,"individualID.1":34,"individualID.2":80,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":1010,"infectionDiff":1847,"infectionDiffY":5.06027,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"034_081","label":"SNPs","pAvg":0.00381,"pSD":0.00134,"pScaled":0.00095,"pRank":50,"nSamples":50,"individualID.1":34,"individualID.2":81,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1726,"infectionDiff":3013,"infectionDiffY":8.25479,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"034_082","label":"SNPs","pAvg":0.00448,"pSD":0.00115,"pScaled":0.00098,"pRank":69,"nSamples":50,"individualID.1":34,"individualID.2":82,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1730,"infectionDiff":3091,"infectionDiffY":8.46849,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"034_083","label":"SNPs","pAvg":0.00468,"pSD":0.00103,"pScaled":0.00182,"pRank":63,"nSamples":50,"individualID.1":34,"individualID.2":83,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1506,"infectionDiff":2560,"infectionDiffY":7.0137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"034_084","label":"SNPs","pAvg":0.00077,"pSD":0.00239,"pScaled":0.00039,"pRank":50,"nSamples":500,"individualID.1":34,"individualID.2":84,"transmission":false,"snpDist":17,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1749,"infectionDiff":2608,"infectionDiffY":7.14521,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"034_085","label":"SNPs","pAvg":0.00087,"pSD":0.00271,"pScaled":0.0003,"pRank":50,"nSamples":500,"individualID.1":34,"individualID.2":85,"transmission":false,"snpDist":15,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":861,"infectionDiff":2273,"infectionDiffY":6.2274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"034_086","label":"SNPs","pAvg":0.0017,"pSD":0.00047,"pScaled":0.00054,"pRank":38,"nSamples":50,"individualID.1":34,"individualID.2":86,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":699,"infectionDiff":1902,"infectionDiffY":5.21096,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"034_087","label":"SNPs","pAvg":0.0002,"pSD":0.00063,"pScaled":0.00016,"pRank":68,"nSamples":500,"individualID.1":34,"individualID.2":87,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":1234,"infectionDiff":2441,"infectionDiffY":6.68767,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"034_088","label":"SNPs","pAvg":0.00516,"pSD":0.00127,"pScaled":0.001,"pRank":60,"nSamples":50,"individualID.1":34,"individualID.2":88,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":1343,"infectionDiff":2776,"infectionDiffY":7.60548,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"034_089","label":"SNPs","pAvg":0.00092,"pSD":0.00286,"pScaled":0.00029,"pRank":51,"nSamples":500,"individualID.1":34,"individualID.2":89,"transmission":false,"snpDist":16,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1635,"infectionDiff":2612,"infectionDiffY":7.15616,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"034_090","label":"SNPs","pAvg":0.00089,"pSD":0.00276,"pScaled":0.00023,"pRank":70,"nSamples":500,"individualID.1":34,"individualID.2":90,"transmission":false,"snpDist":17,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1706,"infectionDiff":2838,"infectionDiffY":7.77534,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"034_091","label":"SNPs","pAvg":0.00053,"pSD":0.00162,"pScaled":0.00026,"pRank":64,"nSamples":500,"individualID.1":34,"individualID.2":91,"transmission":false,"snpDist":16,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1727,"infectionDiff":2430,"infectionDiffY":6.65753,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"034_092","label":"SNPs","pAvg":0.00076,"pSD":0.0024,"pScaled":0.00031,"pRank":52,"nSamples":500,"individualID.1":34,"individualID.2":92,"transmission":false,"snpDist":16,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1774,"infectionDiff":2581,"infectionDiffY":7.07123,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"034_093","label":"SNPs","pAvg":0.00095,"pSD":0.00296,"pScaled":0.00026,"pRank":52,"nSamples":500,"individualID.1":34,"individualID.2":93,"transmission":false,"snpDist":17,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1611,"infectionDiff":2806,"infectionDiffY":7.68767,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"034_094","label":"SNPs","pAvg":0.00036,"pSD":0.00113,"pScaled":0.00012,"pRank":88,"nSamples":500,"individualID.1":34,"individualID.2":94,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1657,"infectionDiff":3078,"infectionDiffY":8.43288,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"034_095","label":"SNPs","pAvg":0.0002,"pSD":0.00062,"pScaled":0.0001,"pRank":69,"nSamples":500,"individualID.1":34,"individualID.2":95,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":1239,"infectionDiff":2510,"infectionDiffY":6.87671,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"034_096","label":"SNPs","pAvg":0.00018,"pSD":0.00055,"pScaled":0.00006,"pRank":82,"nSamples":500,"individualID.1":34,"individualID.2":96,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":1334,"infectionDiff":2742,"infectionDiffY":7.51233,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"034_097","label":"SNPs","pAvg":0.00054,"pSD":0.00169,"pScaled":0.00012,"pRank":88,"nSamples":500,"individualID.1":34,"individualID.2":97,"transmission":false,"snpDist":16,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1577,"infectionDiff":2898,"infectionDiffY":7.93973,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"034_098","label":"SNPs","pAvg":0.00176,"pSD":0.00545,"pScaled":0.0005,"pRank":39,"nSamples":500,"individualID.1":34,"individualID.2":98,"transmission":false,"snpDist":16,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":1396,"infectionDiff":2671,"infectionDiffY":7.31781,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"034_099","label":"SNPs","pAvg":0.00302,"pSD":0.00084,"pScaled":0.00103,"pRank":38,"nSamples":50,"individualID.1":34,"individualID.2":99,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":1379,"infectionDiff":2535,"infectionDiffY":6.94521,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"034_100","label":"SNPs","pAvg":0.00169,"pSD":0.00051,"pScaled":0.0005,"pRank":77,"nSamples":50,"individualID.1":34,"individualID.2":100,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-12 02:53:34","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1995-02-08 22:32:57","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1578,"infectionDiff":2913,"infectionDiffY":7.98082,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"035_009","label":"SNPs","pAvg":0.00577,"pSD":0.01769,"pScaled":0.02573,"pRank":14,"nSamples":500,"individualID.1":35,"individualID.2":9,"transmission":false,"snpDist":12,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":659,"infectionDiff":95,"infectionDiffY":0.26027,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"035_023","label":"SNPs","pAvg":0.00947,"pSD":0.00419,"pScaled":0.00421,"pRank":42,"nSamples":50,"individualID.1":35,"individualID.2":23,"transmission":false,"snpDist":8,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":817,"infectionDiff":1635,"infectionDiffY":4.47945,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"035_026","label":"SNPs","pAvg":0.01501,"pSD":0.00451,"pScaled":0.00527,"pRank":13,"nSamples":50,"individualID.1":35,"individualID.2":26,"transmission":false,"snpDist":7,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":421,"infectionDiff":931,"infectionDiffY":2.55068,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"035_027","label":"SNPs","pAvg":0.00778,"pSD":0.00382,"pScaled":0.00278,"pRank":54,"nSamples":50,"individualID.1":35,"individualID.2":27,"transmission":false,"snpDist":6,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":593,"infectionDiff":1521,"infectionDiffY":4.16712,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"035_028","label":"SNPs","pAvg":0.05497,"pSD":0.00986,"pScaled":0.01535,"pRank":10,"nSamples":50,"individualID.1":35,"individualID.2":28,"transmission":false,"snpDist":6,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":-190,"infectionDiff":345,"infectionDiffY":0.94521,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"035_033","label":"SNPs","pAvg":0.01145,"pSD":0.00347,"pScaled":0.00522,"pRank":14,"nSamples":50,"individualID.1":35,"individualID.2":33,"transmission":false,"snpDist":8,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":38,"infectionDiff":1203,"infectionDiffY":3.29589,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"035_036","label":"SNPs","pAvg":0.74882,"pSD":0.42739,"pScaled":0.20253,"pRank":3,"nSamples":194,"individualID.1":35,"individualID.2":36,"transmission":false,"snpDist":0,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":-201,"infectionDiff":810,"infectionDiffY":2.21918,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"1","snpClose":true} {"pairID":"035_037","label":"SNPs","pAvg":0.03308,"pSD":0.00772,"pScaled":0.03335,"pRank":12,"nSamples":500,"individualID.1":35,"individualID.2":37,"transmission":false,"snpDist":6,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":186,"infectionDiff":333,"infectionDiffY":0.91233,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"035_040","label":"SNPs","pAvg":0.02944,"pSD":0.009,"pScaled":0.02634,"pRank":12,"nSamples":500,"individualID.1":35,"individualID.2":40,"transmission":false,"snpDist":5,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":-178,"infectionDiff":1066,"infectionDiffY":2.92055,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"035_045","label":"SNPs","pAvg":0.05077,"pSD":0.01434,"pScaled":0.03073,"pRank":3,"nSamples":50,"individualID.1":35,"individualID.2":45,"transmission":false,"snpDist":10,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":195,"infectionDiff":577,"infectionDiffY":1.58082,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"035_047","label":"SNPs","pAvg":0.09073,"pSD":0.01976,"pScaled":0.01957,"pRank":8,"nSamples":50,"individualID.1":35,"individualID.2":47,"transmission":false,"snpDist":8,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":-954,"infectionDiff":263,"infectionDiffY":0.72055,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"035_051","label":"SNPs","pAvg":0.90941,"pSD":0.27211,"pScaled":0.43076,"pRank":1,"nSamples":500,"individualID.1":35,"individualID.2":51,"transmission":true,"snpDist":1,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-1167,"infectionDiff":55,"infectionDiffY":0.15068,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"1","snpClose":true} {"pairID":"035_052","label":"SNPs","pAvg":0.85022,"pSD":0.35436,"pScaled":0.31893,"pRank":1,"nSamples":329,"individualID.1":35,"individualID.2":52,"transmission":false,"snpDist":2,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":666,"infectionDiff":1082,"infectionDiffY":2.96438,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"035_053","label":"SNPs","pAvg":0.02539,"pSD":0.00615,"pScaled":0.01695,"pRank":10,"nSamples":50,"individualID.1":35,"individualID.2":53,"transmission":false,"snpDist":6,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":-647,"infectionDiff":547,"infectionDiffY":1.49863,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"035_054","label":"SNPs","pAvg":0.00515,"pSD":0.00209,"pScaled":0.00134,"pRank":42,"nSamples":50,"individualID.1":35,"individualID.2":54,"transmission":false,"snpDist":6,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":524,"infectionDiff":1471,"infectionDiffY":4.03014,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"035_055","label":"SNPs","pAvg":0.05673,"pSD":0.01553,"pScaled":0.01742,"pRank":6,"nSamples":50,"individualID.1":35,"individualID.2":55,"transmission":false,"snpDist":6,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":-493,"infectionDiff":739,"infectionDiffY":2.02466,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"035_056","label":"SNPs","pAvg":0.01458,"pSD":0.00404,"pScaled":0.00348,"pRank":18,"nSamples":50,"individualID.1":35,"individualID.2":56,"transmission":false,"snpDist":6,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":-69,"infectionDiff":823,"infectionDiffY":2.25479,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"035_057","label":"SNPs","pAvg":0.00439,"pSD":0.00192,"pScaled":0.00088,"pRank":43,"nSamples":50,"individualID.1":35,"individualID.2":57,"transmission":false,"snpDist":7,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":494,"infectionDiff":1473,"infectionDiffY":4.03562,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"035_058","label":"SNPs","pAvg":0.00975,"pSD":0.00324,"pScaled":0.00962,"pRank":28,"nSamples":500,"individualID.1":35,"individualID.2":58,"transmission":false,"snpDist":8,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":779,"infectionDiff":1162,"infectionDiffY":3.18356,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"035_060","label":"SNPs","pAvg":0.00837,"pSD":0.00365,"pScaled":0.00405,"pRank":44,"nSamples":50,"individualID.1":35,"individualID.2":60,"transmission":false,"snpDist":6,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":821,"infectionDiff":1804,"infectionDiffY":4.94247,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"035_061","label":"SNPs","pAvg":0.00554,"pSD":0.00192,"pScaled":0.01052,"pRank":17,"nSamples":500,"individualID.1":35,"individualID.2":61,"transmission":false,"snpDist":5,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":614,"infectionDiff":1022,"infectionDiffY":2.8,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"035_064","label":"SNPs","pAvg":0.0259,"pSD":0.00683,"pScaled":0.00984,"pRank":6,"nSamples":50,"individualID.1":35,"individualID.2":64,"transmission":false,"snpDist":7,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":-437,"infectionDiff":703,"infectionDiffY":1.92603,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"035_065","label":"SNPs","pAvg":0.0076,"pSD":0.00206,"pScaled":0.00586,"pRank":18,"nSamples":50,"individualID.1":35,"individualID.2":65,"transmission":false,"snpDist":6,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":-429,"infectionDiff":636,"infectionDiffY":1.74247,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"035_066","label":"SNPs","pAvg":0.03196,"pSD":0.0084,"pScaled":0.00844,"pRank":8,"nSamples":50,"individualID.1":35,"individualID.2":66,"transmission":false,"snpDist":7,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":-282,"infectionDiff":782,"infectionDiffY":2.14247,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"035_067","label":"SNPs","pAvg":0.00459,"pSD":0.00106,"pScaled":0.00116,"pRank":58,"nSamples":50,"individualID.1":35,"individualID.2":67,"transmission":false,"snpDist":8,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":840,"infectionDiff":1868,"infectionDiffY":5.11781,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"035_068","label":"SNPs","pAvg":0.008,"pSD":0.00376,"pScaled":0.00175,"pRank":47,"nSamples":50,"individualID.1":35,"individualID.2":68,"transmission":false,"snpDist":3,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":446,"infectionDiff":1520,"infectionDiffY":4.16438,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"035_069","label":"SNPs","pAvg":0.00176,"pSD":0.00076,"pScaled":0.00057,"pRank":54,"nSamples":50,"individualID.1":35,"individualID.2":69,"transmission":false,"snpDist":4,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":491,"infectionDiff":1546,"infectionDiffY":4.23562,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"035_071","label":"SNPs","pAvg":0.00451,"pSD":0.01388,"pScaled":0.00459,"pRank":30,"nSamples":500,"individualID.1":35,"individualID.2":71,"transmission":false,"snpDist":13,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":546,"infectionDiff":223,"infectionDiffY":0.61096,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"035_072","label":"SNPs","pAvg":0.0576,"pSD":0.01179,"pScaled":0.01753,"pRank":5,"nSamples":50,"individualID.1":35,"individualID.2":72,"transmission":false,"snpDist":9,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":-1013,"infectionDiff":142,"infectionDiffY":0.38904,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"035_073","label":"SNPs","pAvg":0.00602,"pSD":0.00216,"pScaled":0.00443,"pRank":17,"nSamples":50,"individualID.1":35,"individualID.2":73,"transmission":false,"snpDist":3,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":68,"infectionDiff":893,"infectionDiffY":2.44658,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"035_074","label":"SNPs","pAvg":0.83083,"pSD":0.37359,"pScaled":0.45579,"pRank":1,"nSamples":293,"individualID.1":35,"individualID.2":74,"transmission":false,"snpDist":2,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":-92,"infectionDiff":273,"infectionDiffY":0.74795,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":true} {"pairID":"035_075","label":"SNPs","pAvg":0.00187,"pSD":0.00052,"pScaled":0.00811,"pRank":28,"nSamples":500,"individualID.1":35,"individualID.2":75,"transmission":false,"snpDist":10,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":574,"infectionDiff":1846,"infectionDiffY":5.05753,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"035_076","label":"SNPs","pAvg":0.0103,"pSD":0.00417,"pScaled":0.00252,"pRank":33,"nSamples":50,"individualID.1":35,"individualID.2":76,"transmission":false,"snpDist":3,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":809,"infectionDiff":1520,"infectionDiffY":4.16438,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"035_077","label":"SNPs","pAvg":0.59401,"pSD":0.4892,"pScaled":0.13143,"pRank":2,"nSamples":122,"individualID.1":35,"individualID.2":77,"transmission":false,"snpDist":2,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":-38,"infectionDiff":1235,"infectionDiffY":3.38356,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"035_078","label":"SNPs","pAvg":0.66699,"pSD":0.47016,"pScaled":0.14769,"pRank":2,"nSamples":149,"individualID.1":35,"individualID.2":78,"transmission":false,"snpDist":2,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":653,"infectionDiff":1548,"infectionDiffY":4.2411,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"035_079","label":"SNPs","pAvg":0.00155,"pSD":0.00491,"pScaled":0.00078,"pRank":49,"nSamples":500,"individualID.1":35,"individualID.2":79,"transmission":false,"snpDist":11,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":61,"infectionDiff":831,"infectionDiffY":2.27671,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"035_080","label":"SNPs","pAvg":0.00587,"pSD":0.00185,"pScaled":0.04286,"pRank":4,"nSamples":500,"individualID.1":35,"individualID.2":80,"transmission":false,"snpDist":5,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":70,"infectionDiff":763,"infectionDiffY":2.09041,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"035_081","label":"SNPs","pAvg":0.61904,"pSD":0.48675,"pScaled":0.15416,"pRank":4,"nSamples":131,"individualID.1":35,"individualID.2":81,"transmission":false,"snpDist":2,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":786,"infectionDiff":1930,"infectionDiffY":5.28767,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":true} {"pairID":"035_082","label":"SNPs","pAvg":0.00754,"pSD":0.00214,"pScaled":0.00164,"pRank":43,"nSamples":50,"individualID.1":35,"individualID.2":82,"transmission":false,"snpDist":4,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":790,"infectionDiff":2007,"infectionDiffY":5.49863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"035_083","label":"SNPs","pAvg":0.00824,"pSD":0.00432,"pScaled":0.00321,"pRank":42,"nSamples":50,"individualID.1":35,"individualID.2":83,"transmission":false,"snpDist":4,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":566,"infectionDiff":1477,"infectionDiffY":4.04658,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"035_084","label":"SNPs","pAvg":0.00043,"pSD":0.0014,"pScaled":0.00022,"pRank":64,"nSamples":500,"individualID.1":35,"individualID.2":84,"transmission":false,"snpDist":13,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":809,"infectionDiff":1525,"infectionDiffY":4.17808,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"035_085","label":"SNPs","pAvg":0.0011,"pSD":0.00346,"pScaled":0.00038,"pRank":41,"nSamples":500,"individualID.1":35,"individualID.2":85,"transmission":false,"snpDist":11,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":-79,"infectionDiff":1190,"infectionDiffY":3.26027,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"035_086","label":"SNPs","pAvg":0.70228,"pSD":0.4568,"pScaled":0.22368,"pRank":3,"nSamples":167,"individualID.1":35,"individualID.2":86,"transmission":false,"snpDist":2,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":-241,"infectionDiff":818,"infectionDiffY":2.2411,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":true} {"pairID":"035_087","label":"SNPs","pAvg":0.00424,"pSD":0.0016,"pScaled":0.00346,"pRank":19,"nSamples":50,"individualID.1":35,"individualID.2":87,"transmission":false,"snpDist":6,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":294,"infectionDiff":1358,"infectionDiffY":3.72055,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"035_088","label":"SNPs","pAvg":0.00886,"pSD":0.00389,"pScaled":0.00171,"pRank":32,"nSamples":50,"individualID.1":35,"individualID.2":88,"transmission":false,"snpDist":3,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":403,"infectionDiff":1693,"infectionDiffY":4.63836,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"035_089","label":"SNPs","pAvg":0.00052,"pSD":0.00173,"pScaled":0.00017,"pRank":63,"nSamples":500,"individualID.1":35,"individualID.2":89,"transmission":false,"snpDist":12,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":695,"infectionDiff":1529,"infectionDiffY":4.18904,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"035_090","label":"SNPs","pAvg":0.00052,"pSD":0.00168,"pScaled":0.00013,"pRank":79,"nSamples":500,"individualID.1":35,"individualID.2":90,"transmission":false,"snpDist":13,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":766,"infectionDiff":1755,"infectionDiffY":4.80822,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"035_091","label":"SNPs","pAvg":0.00194,"pSD":0.00617,"pScaled":0.00097,"pRank":39,"nSamples":500,"individualID.1":35,"individualID.2":91,"transmission":false,"snpDist":12,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":787,"infectionDiff":1347,"infectionDiffY":3.69041,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"035_092","label":"SNPs","pAvg":0.00044,"pSD":0.00144,"pScaled":0.00018,"pRank":65,"nSamples":500,"individualID.1":35,"individualID.2":92,"transmission":false,"snpDist":12,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":834,"infectionDiff":1498,"infectionDiffY":4.10411,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"035_093","label":"SNPs","pAvg":0.00057,"pSD":0.00189,"pScaled":0.00015,"pRank":73,"nSamples":500,"individualID.1":35,"individualID.2":93,"transmission":false,"snpDist":13,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":671,"infectionDiff":1723,"infectionDiffY":4.72055,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"035_094","label":"SNPs","pAvg":0.00179,"pSD":0.0005,"pScaled":0.00059,"pRank":60,"nSamples":50,"individualID.1":35,"individualID.2":94,"transmission":false,"snpDist":6,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":717,"infectionDiff":1995,"infectionDiffY":5.46575,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"035_095","label":"SNPs","pAvg":0.00432,"pSD":0.0016,"pScaled":0.0022,"pRank":19,"nSamples":50,"individualID.1":35,"individualID.2":95,"transmission":false,"snpDist":6,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":299,"infectionDiff":1427,"infectionDiffY":3.90959,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"035_096","label":"SNPs","pAvg":0.00178,"pSD":0.00083,"pScaled":0.00062,"pRank":56,"nSamples":50,"individualID.1":35,"individualID.2":96,"transmission":false,"snpDist":6,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":394,"infectionDiff":1659,"infectionDiffY":4.54521,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"035_097","label":"SNPs","pAvg":0.00088,"pSD":0.00289,"pScaled":0.0002,"pRank":82,"nSamples":500,"individualID.1":35,"individualID.2":97,"transmission":false,"snpDist":12,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":637,"infectionDiff":1815,"infectionDiffY":4.9726,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"035_098","label":"SNPs","pAvg":0.0005,"pSD":0.00163,"pScaled":0.00014,"pRank":71,"nSamples":500,"individualID.1":35,"individualID.2":98,"transmission":false,"snpDist":12,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":456,"infectionDiff":1588,"infectionDiffY":4.35068,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"035_099","label":"SNPs","pAvg":0.00296,"pSD":0.0011,"pScaled":0.00101,"pRank":42,"nSamples":50,"individualID.1":35,"individualID.2":99,"transmission":false,"snpDist":3,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":438,"infectionDiff":1452,"infectionDiffY":3.97808,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"035_100","label":"SNPs","pAvg":0.00898,"pSD":0.00161,"pScaled":0.00265,"pRank":42,"nSamples":50,"individualID.1":35,"individualID.2":100,"transmission":false,"snpDist":3,"infectionDate.1":"1994-01-30 04:24:34","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1997-09-06 01:15:55","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":638,"infectionDiff":1830,"infectionDiffY":5.0137,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"036_023","label":"SNPs","pAvg":0.06038,"pSD":0.0207,"pScaled":0.02687,"pRank":5,"nSamples":50,"individualID.1":36,"individualID.2":23,"transmission":false,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1018,"infectionDiff":824,"infectionDiffY":2.25753,"timeCat":"3","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"036_026","label":"SNPs","pAvg":0.05105,"pSD":0.01444,"pScaled":0.01793,"pRank":4,"nSamples":50,"individualID.1":36,"individualID.2":26,"transmission":false,"snpDist":7,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":622,"infectionDiff":121,"infectionDiffY":0.33151,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"036_027","label":"SNPs","pAvg":0.06352,"pSD":0.01817,"pScaled":0.02268,"pRank":4,"nSamples":50,"individualID.1":36,"individualID.2":27,"transmission":false,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":794,"infectionDiff":710,"infectionDiffY":1.94521,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"036_033","label":"SNPs","pAvg":0.01795,"pSD":0.0049,"pScaled":0.00818,"pRank":8,"nSamples":50,"individualID.1":36,"individualID.2":33,"transmission":false,"snpDist":8,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":239,"infectionDiff":392,"infectionDiffY":1.07397,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"036_040","label":"SNPs","pAvg":0.07205,"pSD":0.01896,"pScaled":0.06445,"pRank":2,"nSamples":500,"individualID.1":36,"individualID.2":40,"transmission":false,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":22,"infectionDiff":256,"infectionDiffY":0.70137,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"036_052","label":"SNPs","pAvg":0.78497,"pSD":0.39861,"pScaled":0.29446,"pRank":2,"nSamples":221,"individualID.1":36,"individualID.2":52,"transmission":true,"snpDist":2,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":866,"infectionDiff":272,"infectionDiffY":0.74521,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":true} {"pairID":"036_054","label":"SNPs","pAvg":0.01779,"pSD":0.00449,"pScaled":0.00463,"pRank":13,"nSamples":50,"individualID.1":36,"individualID.2":54,"transmission":false,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":725,"infectionDiff":661,"infectionDiffY":1.81096,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"036_056","label":"SNPs","pAvg":0.05129,"pSD":0.01382,"pScaled":0.01226,"pRank":8,"nSamples":50,"individualID.1":36,"individualID.2":56,"transmission":false,"snpDist":6,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":132,"infectionDiff":13,"infectionDiffY":0.03562,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"036_057","label":"SNPs","pAvg":0.04033,"pSD":0.01279,"pScaled":0.00807,"pRank":14,"nSamples":50,"individualID.1":36,"individualID.2":57,"transmission":false,"snpDist":7,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":695,"infectionDiff":663,"infectionDiffY":1.81644,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"036_058","label":"SNPs","pAvg":0.05059,"pSD":0.01402,"pScaled":0.04992,"pRank":5,"nSamples":500,"individualID.1":36,"individualID.2":58,"transmission":false,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":980,"infectionDiff":351,"infectionDiffY":0.96164,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"036_060","label":"SNPs","pAvg":0.03974,"pSD":0.01345,"pScaled":0.01925,"pRank":11,"nSamples":50,"individualID.1":36,"individualID.2":60,"transmission":false,"snpDist":6,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1022,"infectionDiff":993,"infectionDiffY":2.72055,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"036_061","label":"SNPs","pAvg":0.00958,"pSD":0.00277,"pScaled":0.01819,"pRank":13,"nSamples":500,"individualID.1":36,"individualID.2":61,"transmission":false,"snpDist":5,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":815,"infectionDiff":211,"infectionDiffY":0.57808,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"036_067","label":"SNPs","pAvg":0.03029,"pSD":0.0083,"pScaled":0.00764,"pRank":16,"nSamples":50,"individualID.1":36,"individualID.2":67,"transmission":false,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1041,"infectionDiff":1057,"infectionDiffY":2.89589,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"036_068","label":"SNPs","pAvg":0.05328,"pSD":0.01261,"pScaled":0.01164,"pRank":10,"nSamples":50,"individualID.1":36,"individualID.2":68,"transmission":false,"snpDist":3,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":647,"infectionDiff":709,"infectionDiffY":1.94247,"timeCat":"2","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"036_069","label":"SNPs","pAvg":0.00443,"pSD":0.00139,"pScaled":0.00142,"pRank":38,"nSamples":50,"individualID.1":36,"individualID.2":69,"transmission":false,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":692,"infectionDiff":736,"infectionDiffY":2.01644,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"036_073","label":"SNPs","pAvg":0.02196,"pSD":0.00626,"pScaled":0.01617,"pRank":8,"nSamples":50,"individualID.1":36,"individualID.2":73,"transmission":false,"snpDist":3,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":269,"infectionDiff":82,"infectionDiffY":0.22466,"timeCat":"1","Z1":"0","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"036_075","label":"SNPs","pAvg":0.00912,"pSD":0.00327,"pScaled":0.03958,"pRank":9,"nSamples":500,"individualID.1":36,"individualID.2":75,"transmission":false,"snpDist":10,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":775,"infectionDiff":1036,"infectionDiffY":2.83836,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"036_076","label":"SNPs","pAvg":0.01789,"pSD":0.00422,"pScaled":0.00438,"pRank":23,"nSamples":50,"individualID.1":36,"individualID.2":76,"transmission":false,"snpDist":3,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1010,"infectionDiff":709,"infectionDiffY":1.94247,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"036_077","label":"SNPs","pAvg":0.28073,"pSD":0.4348,"pScaled":0.06211,"pRank":7,"nSamples":68,"individualID.1":36,"individualID.2":77,"transmission":false,"snpDist":2,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":163,"infectionDiff":424,"infectionDiffY":1.16164,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":true} {"pairID":"036_078","label":"SNPs","pAvg":0.04324,"pSD":0.01214,"pScaled":0.00957,"pRank":10,"nSamples":50,"individualID.1":36,"individualID.2":78,"transmission":false,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":854,"infectionDiff":737,"infectionDiffY":2.01918,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"036_079","label":"SNPs","pAvg":0.02796,"pSD":0.00709,"pScaled":0.01406,"pRank":3,"nSamples":50,"individualID.1":36,"individualID.2":79,"transmission":false,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":262,"infectionDiff":21,"infectionDiffY":0.05753,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"036_081","label":"SNPs","pAvg":0.00873,"pSD":0.00294,"pScaled":0.00217,"pRank":28,"nSamples":50,"individualID.1":36,"individualID.2":81,"transmission":false,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":987,"infectionDiff":1120,"infectionDiffY":3.06849,"timeCat":"4","Z1":"0","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"036_082","label":"SNPs","pAvg":0.01647,"pSD":0.005,"pScaled":0.00359,"pRank":25,"nSamples":50,"individualID.1":36,"individualID.2":82,"transmission":false,"snpDist":4,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":991,"infectionDiff":1197,"infectionDiffY":3.27945,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"036_083","label":"SNPs","pAvg":0.05603,"pSD":0.01497,"pScaled":0.0218,"pRank":3,"nSamples":50,"individualID.1":36,"individualID.2":83,"transmission":false,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":767,"infectionDiff":667,"infectionDiffY":1.8274,"timeCat":"2","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"036_084","label":"SNPs","pAvg":0.00212,"pSD":0.00659,"pScaled":0.00107,"pRank":24,"nSamples":500,"individualID.1":36,"individualID.2":84,"transmission":false,"snpDist":13,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1010,"infectionDiff":715,"infectionDiffY":1.9589,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"036_085","label":"SNPs","pAvg":0.00182,"pSD":0.00564,"pScaled":0.00062,"pRank":29,"nSamples":500,"individualID.1":36,"individualID.2":85,"transmission":false,"snpDist":11,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":122,"infectionDiff":380,"infectionDiffY":1.0411,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"036_086","label":"SNPs","pAvg":0.62129,"pSD":0.48387,"pScaled":0.19788,"pRank":4,"nSamples":131,"individualID.1":36,"individualID.2":86,"transmission":false,"snpDist":2,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":-40,"infectionDiff":8,"infectionDiffY":0.02192,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":true} {"pairID":"036_087","label":"SNPs","pAvg":0.01065,"pSD":0.00316,"pScaled":0.00869,"pRank":7,"nSamples":50,"individualID.1":36,"individualID.2":87,"transmission":false,"snpDist":6,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":495,"infectionDiff":547,"infectionDiffY":1.49863,"timeCat":"2","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"036_088","label":"SNPs","pAvg":0.02208,"pSD":0.00615,"pScaled":0.00427,"pRank":18,"nSamples":50,"individualID.1":36,"individualID.2":88,"transmission":false,"snpDist":3,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":604,"infectionDiff":882,"infectionDiffY":2.41644,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"036_089","label":"SNPs","pAvg":0.00183,"pSD":0.00569,"pScaled":0.00059,"pRank":29,"nSamples":500,"individualID.1":36,"individualID.2":89,"transmission":false,"snpDist":12,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":896,"infectionDiff":719,"infectionDiffY":1.96986,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"036_090","label":"SNPs","pAvg":0.01384,"pSD":0.00381,"pScaled":0.00359,"pRank":18,"nSamples":50,"individualID.1":36,"individualID.2":90,"transmission":false,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":966,"infectionDiff":945,"infectionDiffY":2.58904,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"036_091","label":"SNPs","pAvg":0.00308,"pSD":0.00947,"pScaled":0.00154,"pRank":32,"nSamples":500,"individualID.1":36,"individualID.2":91,"transmission":false,"snpDist":12,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":988,"infectionDiff":536,"infectionDiffY":1.46849,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"036_092","label":"SNPs","pAvg":0.00216,"pSD":0.00679,"pScaled":0.00088,"pRank":22,"nSamples":500,"individualID.1":36,"individualID.2":92,"transmission":false,"snpDist":12,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1035,"infectionDiff":687,"infectionDiffY":1.88219,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"036_093","label":"SNPs","pAvg":0.00219,"pSD":0.00693,"pScaled":0.00059,"pRank":38,"nSamples":500,"individualID.1":36,"individualID.2":93,"transmission":false,"snpDist":13,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":872,"infectionDiff":913,"infectionDiffY":2.50137,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"036_094","label":"SNPs","pAvg":0.00645,"pSD":0.0024,"pScaled":0.00213,"pRank":36,"nSamples":50,"individualID.1":36,"individualID.2":94,"transmission":false,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":918,"infectionDiff":1184,"infectionDiffY":3.24384,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"036_095","label":"SNPs","pAvg":0.01089,"pSD":0.00339,"pScaled":0.00554,"pRank":7,"nSamples":50,"individualID.1":36,"individualID.2":95,"transmission":false,"snpDist":6,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":500,"infectionDiff":616,"infectionDiffY":1.68767,"timeCat":"2","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"036_096","label":"SNPs","pAvg":0.00527,"pSD":0.00165,"pScaled":0.00185,"pRank":27,"nSamples":50,"individualID.1":36,"individualID.2":96,"transmission":false,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":595,"infectionDiff":848,"infectionDiffY":2.32329,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"036_097","label":"SNPs","pAvg":0.02297,"pSD":0.0063,"pScaled":0.00515,"pRank":17,"nSamples":50,"individualID.1":36,"individualID.2":97,"transmission":false,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":838,"infectionDiff":1005,"infectionDiffY":2.75342,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"036_098","label":"SNPs","pAvg":0.00261,"pSD":0.00821,"pScaled":0.00074,"pRank":33,"nSamples":500,"individualID.1":36,"individualID.2":98,"transmission":false,"snpDist":12,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":657,"infectionDiff":777,"infectionDiffY":2.12877,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"036_099","label":"SNPs","pAvg":0.01394,"pSD":0.00463,"pScaled":0.00476,"pRank":16,"nSamples":50,"individualID.1":36,"individualID.2":99,"transmission":false,"snpDist":3,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":639,"infectionDiff":641,"infectionDiffY":1.75616,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"036_100","label":"SNPs","pAvg":0.0144,"pSD":0.0042,"pScaled":0.00424,"pRank":31,"nSamples":50,"individualID.1":36,"individualID.2":100,"transmission":false,"infectionDate.1":"1996-04-19 15:10:02","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1997-02-17 02:48:06","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":839,"infectionDiff":1019,"infectionDiffY":2.79178,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"037_023","label":"SNPs","pAvg":0.02714,"pSD":0.0085,"pScaled":0.01208,"pRank":15,"nSamples":50,"individualID.1":37,"individualID.2":23,"transmission":false,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":630,"infectionDiff":1302,"infectionDiffY":3.56712,"timeCat":"4","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"037_026","label":"SNPs","pAvg":0.00589,"pSD":0.0183,"pScaled":0.00207,"pRank":39,"nSamples":500,"individualID.1":37,"individualID.2":26,"transmission":false,"snpDist":11,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":235,"infectionDiff":599,"infectionDiffY":1.6411,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"037_027","label":"SNPs","pAvg":0.01517,"pSD":0.00501,"pScaled":0.00542,"pRank":28,"nSamples":50,"individualID.1":37,"individualID.2":27,"transmission":false,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":407,"infectionDiff":1188,"infectionDiffY":3.25479,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"037_028","label":"SNPs","pAvg":0.07976,"pSD":0.01661,"pScaled":0.02228,"pRank":4,"nSamples":50,"individualID.1":37,"individualID.2":28,"transmission":false,"snpDist":10,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":-376,"infectionDiff":13,"infectionDiffY":0.03562,"timeCat":"1","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"037_033","label":"SNPs","pAvg":0.00251,"pSD":0.00781,"pScaled":0.00114,"pRank":55,"nSamples":500,"individualID.1":37,"individualID.2":33,"transmission":false,"snpDist":13,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":-149,"infectionDiff":870,"infectionDiffY":2.38356,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"037_036","label":"SNPs","pAvg":0.05412,"pSD":0.01294,"pScaled":0.01464,"pRank":11,"nSamples":50,"individualID.1":37,"individualID.2":36,"transmission":false,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":-387,"infectionDiff":478,"infectionDiffY":1.30959,"timeCat":"2","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"037_040","label":"SNPs","pAvg":0.02861,"pSD":0.0082,"pScaled":0.02559,"pRank":14,"nSamples":500,"individualID.1":37,"individualID.2":40,"transmission":false,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":-365,"infectionDiff":734,"infectionDiffY":2.01096,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"037_045","label":"SNPs","pAvg":0.00634,"pSD":0.01957,"pScaled":0.00384,"pRank":32,"nSamples":500,"individualID.1":37,"individualID.2":45,"transmission":false,"snpDist":13,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":9,"infectionDiff":245,"infectionDiffY":0.67123,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"037_052","label":"SNPs","pAvg":0.04029,"pSD":0.0134,"pScaled":0.01511,"pRank":9,"nSamples":50,"individualID.1":37,"individualID.2":52,"transmission":false,"snpDist":8,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":479,"infectionDiff":750,"infectionDiffY":2.05479,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"037_053","label":"SNPs","pAvg":0.90753,"pSD":0.27777,"pScaled":0.60602,"pRank":1,"nSamples":500,"individualID.1":37,"individualID.2":53,"transmission":true,"snpDist":0,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":-833,"infectionDiff":214,"infectionDiffY":0.5863,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":true} {"pairID":"037_054","label":"SNPs","pAvg":0.01639,"pSD":0.00507,"pScaled":0.00427,"pRank":14,"nSamples":50,"individualID.1":37,"individualID.2":54,"transmission":true,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":338,"infectionDiff":1139,"infectionDiffY":3.12055,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"037_055","label":"SNPs","pAvg":0.73498,"pSD":0.43666,"pScaled":0.22574,"pRank":2,"nSamples":185,"individualID.1":37,"individualID.2":55,"transmission":true,"snpDist":0,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":-679,"infectionDiff":406,"infectionDiffY":1.11233,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":true} {"pairID":"037_056","label":"SNPs","pAvg":0.58246,"pSD":0.47089,"pScaled":0.13918,"pRank":4,"nSamples":113,"individualID.1":37,"individualID.2":56,"transmission":true,"snpDist":0,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":-255,"infectionDiff":491,"infectionDiffY":1.34521,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":true} {"pairID":"037_057","label":"SNPs","pAvg":0.4877,"pSD":0.48863,"pScaled":0.09752,"pRank":6,"nSamples":95,"individualID.1":37,"individualID.2":57,"transmission":true,"snpDist":1,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":308,"infectionDiff":1141,"infectionDiffY":3.12603,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":true} {"pairID":"037_058","label":"SNPs","pAvg":0.04136,"pSD":0.01258,"pScaled":0.04082,"pRank":7,"nSamples":500,"individualID.1":37,"individualID.2":58,"transmission":false,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":593,"infectionDiff":829,"infectionDiffY":2.27123,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"037_060","label":"SNPs","pAvg":0.00857,"pSD":0.0037,"pScaled":0.00415,"pRank":42,"nSamples":50,"individualID.1":37,"individualID.2":60,"transmission":false,"snpDist":8,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":634,"infectionDiff":1471,"infectionDiffY":4.03014,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"037_061","label":"SNPs","pAvg":0.01775,"pSD":0.00447,"pScaled":0.03369,"pRank":9,"nSamples":500,"individualID.1":37,"individualID.2":61,"transmission":false,"snpDist":7,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":427,"infectionDiff":689,"infectionDiffY":1.88767,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"037_064","label":"SNPs","pAvg":0.80125,"pSD":0.38728,"pScaled":0.30428,"pRank":1,"nSamples":239,"individualID.1":37,"individualID.2":64,"transmission":false,"snpDist":1,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":-623,"infectionDiff":370,"infectionDiffY":1.0137,"timeCat":"2","Z1":"1","Z2":"0","Z3":"2","Z4":"1","snpClose":true} {"pairID":"037_065","label":"SNPs","pAvg":0.04177,"pSD":0.01192,"pScaled":0.03223,"pRank":3,"nSamples":50,"individualID.1":37,"individualID.2":65,"transmission":false,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":-615,"infectionDiff":303,"infectionDiffY":0.83014,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"037_066","label":"SNPs","pAvg":0.702,"pSD":0.43946,"pScaled":0.18538,"pRank":1,"nSamples":158,"individualID.1":37,"individualID.2":66,"transmission":false,"snpDist":1,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":-468,"infectionDiff":450,"infectionDiffY":1.23288,"timeCat":"2","Z1":"1","Z2":"1","Z3":"2","Z4":"2","snpClose":true} {"pairID":"037_067","label":"SNPs","pAvg":0.01297,"pSD":0.00658,"pScaled":0.00327,"pRank":39,"nSamples":50,"individualID.1":37,"individualID.2":67,"transmission":false,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":654,"infectionDiff":1535,"infectionDiffY":4.20548,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"037_068","label":"SNPs","pAvg":0.01289,"pSD":0.00402,"pScaled":0.00282,"pRank":28,"nSamples":50,"individualID.1":37,"individualID.2":68,"transmission":false,"snpDist":5,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":260,"infectionDiff":1187,"infectionDiffY":3.25205,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"037_069","label":"SNPs","pAvg":0.00969,"pSD":0.00364,"pScaled":0.00311,"pRank":22,"nSamples":50,"individualID.1":37,"individualID.2":69,"transmission":false,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":305,"infectionDiff":1214,"infectionDiffY":3.32603,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"037_073","label":"SNPs","pAvg":0.0192,"pSD":0.00591,"pScaled":0.01414,"pRank":10,"nSamples":50,"individualID.1":37,"individualID.2":73,"transmission":false,"snpDist":9,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":-118,"infectionDiff":560,"infectionDiffY":1.53425,"timeCat":"2","Z1":"1","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"037_075","label":"SNPs","pAvg":0.00303,"pSD":0.00155,"pScaled":0.01315,"pRank":24,"nSamples":500,"individualID.1":37,"individualID.2":75,"transmission":false,"snpDist":4,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":388,"infectionDiff":1514,"infectionDiffY":4.14795,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"037_076","label":"SNPs","pAvg":0.01598,"pSD":0.00539,"pScaled":0.00392,"pRank":26,"nSamples":50,"individualID.1":37,"individualID.2":76,"transmission":false,"snpDist":5,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":623,"infectionDiff":1187,"infectionDiffY":3.25205,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"037_077","label":"SNPs","pAvg":0.02204,"pSD":0.0065,"pScaled":0.00488,"pRank":19,"nSamples":50,"individualID.1":37,"individualID.2":77,"transmission":false,"snpDist":4,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":-224,"infectionDiff":902,"infectionDiffY":2.47123,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"037_078","label":"SNPs","pAvg":0.01925,"pSD":0.00613,"pScaled":0.00426,"pRank":24,"nSamples":50,"individualID.1":37,"individualID.2":78,"transmission":false,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":467,"infectionDiff":1215,"infectionDiffY":3.32877,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"037_079","label":"SNPs","pAvg":0.00653,"pSD":0.00183,"pScaled":0.00328,"pRank":18,"nSamples":50,"individualID.1":37,"individualID.2":79,"transmission":false,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":-125,"infectionDiff":499,"infectionDiffY":1.36712,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"037_080","label":"SNPs","pAvg":0.00101,"pSD":0.00318,"pScaled":0.00735,"pRank":29,"nSamples":500,"individualID.1":37,"individualID.2":80,"transmission":false,"snpDist":11,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":-116,"infectionDiff":431,"infectionDiffY":1.18082,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"037_081","label":"SNPs","pAvg":0.00462,"pSD":0.00205,"pScaled":0.00115,"pRank":42,"nSamples":50,"individualID.1":37,"individualID.2":81,"transmission":false,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":600,"infectionDiff":1598,"infectionDiffY":4.37808,"timeCat":"5","Z1":"1","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"037_082","label":"SNPs","pAvg":0.00385,"pSD":0.00168,"pScaled":0.00084,"pRank":79,"nSamples":50,"individualID.1":37,"individualID.2":82,"transmission":false,"snpDist":6,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":604,"infectionDiff":1675,"infectionDiffY":4.58904,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"037_083","label":"SNPs","pAvg":0.01373,"pSD":0.00464,"pScaled":0.00534,"pRank":23,"nSamples":50,"individualID.1":37,"individualID.2":83,"transmission":false,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":380,"infectionDiff":1145,"infectionDiffY":3.13699,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"037_084","label":"SNPs","pAvg":0.00032,"pSD":0.00106,"pScaled":0.00016,"pRank":71,"nSamples":500,"individualID.1":37,"individualID.2":84,"transmission":false,"snpDist":17,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":623,"infectionDiff":1193,"infectionDiffY":3.26849,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"037_085","label":"SNPs","pAvg":0.00056,"pSD":0.00176,"pScaled":0.00019,"pRank":54,"nSamples":500,"individualID.1":37,"individualID.2":85,"transmission":false,"snpDist":15,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":-265,"infectionDiff":858,"infectionDiffY":2.35068,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"037_086","label":"SNPs","pAvg":0.02042,"pSD":0.00528,"pScaled":0.0065,"pRank":9,"nSamples":50,"individualID.1":37,"individualID.2":86,"transmission":false,"snpDist":8,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":-427,"infectionDiff":486,"infectionDiffY":1.33151,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"037_087","label":"SNPs","pAvg":0.00198,"pSD":0.00633,"pScaled":0.00162,"pRank":35,"nSamples":500,"individualID.1":37,"individualID.2":87,"transmission":false,"snpDist":12,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":107,"infectionDiff":1025,"infectionDiffY":2.80822,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"037_088","label":"SNPs","pAvg":0.00945,"pSD":0.00318,"pScaled":0.00183,"pRank":31,"nSamples":50,"individualID.1":37,"individualID.2":88,"transmission":false,"snpDist":5,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":217,"infectionDiff":1360,"infectionDiffY":3.72603,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"037_089","label":"SNPs","pAvg":0.00038,"pSD":0.00121,"pScaled":0.00012,"pRank":75,"nSamples":500,"individualID.1":37,"individualID.2":89,"transmission":false,"snpDist":16,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":509,"infectionDiff":1196,"infectionDiffY":3.27671,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"037_090","label":"SNPs","pAvg":0.00365,"pSD":0.0014,"pScaled":0.00095,"pRank":43,"nSamples":50,"individualID.1":37,"individualID.2":90,"transmission":false,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":579,"infectionDiff":1423,"infectionDiffY":3.89863,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"037_091","label":"SNPs","pAvg":0.00154,"pSD":0.00478,"pScaled":0.00077,"pRank":44,"nSamples":500,"individualID.1":37,"individualID.2":91,"transmission":false,"snpDist":16,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":600,"infectionDiff":1014,"infectionDiffY":2.77808,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"037_092","label":"SNPs","pAvg":0.00032,"pSD":0.00105,"pScaled":0.00013,"pRank":70,"nSamples":500,"individualID.1":37,"individualID.2":92,"transmission":false,"snpDist":16,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":647,"infectionDiff":1165,"infectionDiffY":3.19178,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"037_093","label":"SNPs","pAvg":0.00059,"pSD":0.00188,"pScaled":0.00016,"pRank":67,"nSamples":500,"individualID.1":37,"individualID.2":93,"transmission":false,"snpDist":17,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":485,"infectionDiff":1391,"infectionDiffY":3.81096,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"037_094","label":"SNPs","pAvg":0.00736,"pSD":0.00375,"pScaled":0.00243,"pRank":33,"nSamples":50,"individualID.1":37,"individualID.2":94,"transmission":false,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":530,"infectionDiff":1662,"infectionDiffY":4.55342,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"037_095","label":"SNPs","pAvg":0.00195,"pSD":0.00628,"pScaled":0.00099,"pRank":36,"nSamples":500,"individualID.1":37,"individualID.2":95,"transmission":false,"snpDist":12,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":113,"infectionDiff":1094,"infectionDiffY":2.99726,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"037_096","label":"SNPs","pAvg":0.00849,"pSD":0.0033,"pScaled":0.00297,"pRank":20,"nSamples":50,"individualID.1":37,"individualID.2":96,"transmission":false,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":208,"infectionDiff":1326,"infectionDiffY":3.63288,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"037_097","label":"SNPs","pAvg":0.00439,"pSD":0.00217,"pScaled":0.00098,"pRank":56,"nSamples":50,"individualID.1":37,"individualID.2":97,"transmission":false,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":451,"infectionDiff":1482,"infectionDiffY":4.06027,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"037_098","label":"SNPs","pAvg":0.00071,"pSD":0.00223,"pScaled":0.0002,"pRank":68,"nSamples":500,"individualID.1":37,"individualID.2":98,"transmission":false,"snpDist":16,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":269,"infectionDiff":1255,"infectionDiffY":3.43836,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"037_099","label":"SNPs","pAvg":0.01474,"pSD":0.00494,"pScaled":0.00504,"pRank":15,"nSamples":50,"individualID.1":37,"individualID.2":99,"transmission":false,"snpDist":9,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":252,"infectionDiff":1119,"infectionDiffY":3.06575,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"037_100","label":"SNPs","pAvg":0.0056,"pSD":0.00287,"pScaled":0.00165,"pRank":57,"nSamples":50,"individualID.1":37,"individualID.2":100,"transmission":false,"infectionDate.1":"1994-12-28 18:57:34","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1998-03-11 06:54:30","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":451,"infectionDiff":1497,"infectionDiffY":4.10137,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"038_009","label":"SNPs","pAvg":0.00444,"pSD":0.01367,"pScaled":0.01978,"pRank":17,"nSamples":500,"individualID.1":38,"individualID.2":9,"transmission":false,"snpDist":17,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":1411,"infectionDiff":118,"infectionDiffY":0.32329,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"038_023","label":"SNPs","pAvg":0.00923,"pSD":0.00411,"pScaled":0.00411,"pRank":44,"nSamples":50,"individualID.1":38,"individualID.2":23,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1568,"infectionDiff":1657,"infectionDiffY":4.53973,"timeCat":"5","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"038_026","label":"SNPs","pAvg":0.0055,"pSD":0.0172,"pScaled":0.00193,"pRank":42,"nSamples":500,"individualID.1":38,"individualID.2":26,"transmission":false,"snpDist":12,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1173,"infectionDiff":954,"infectionDiffY":2.6137,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"038_027","label":"SNPs","pAvg":0.00987,"pSD":0.00411,"pScaled":0.00352,"pRank":37,"nSamples":50,"individualID.1":38,"individualID.2":27,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1345,"infectionDiff":1543,"infectionDiffY":4.2274,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"038_028","label":"SNPs","pAvg":0.00404,"pSD":0.01243,"pScaled":0.00113,"pRank":48,"nSamples":500,"individualID.1":38,"individualID.2":28,"transmission":false,"snpDist":11,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":562,"infectionDiff":368,"infectionDiffY":1.00822,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"038_033","label":"SNPs","pAvg":0.00169,"pSD":0.00533,"pScaled":0.00077,"pRank":60,"nSamples":500,"individualID.1":38,"individualID.2":33,"transmission":false,"snpDist":14,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":790,"infectionDiff":1225,"infectionDiffY":3.35616,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"038_035","label":"SNPs","pAvg":0.02778,"pSD":0.00623,"pScaled":0.00722,"pRank":18,"nSamples":50,"individualID.1":38,"individualID.2":35,"transmission":false,"snpDist":7,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":752,"infectionDiff":23,"infectionDiffY":0.06301,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"038_036","label":"SNPs","pAvg":0.03613,"pSD":0.01116,"pScaled":0.00977,"pRank":18,"nSamples":50,"individualID.1":38,"individualID.2":36,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":551,"infectionDiff":833,"infectionDiffY":2.28219,"timeCat":"3","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"038_037","label":"SNPs","pAvg":0.08824,"pSD":0.0183,"pScaled":0.08897,"pRank":1,"nSamples":500,"individualID.1":38,"individualID.2":37,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":938,"infectionDiff":355,"infectionDiffY":0.9726,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"038_040","label":"SNPs","pAvg":0.02929,"pSD":0.00841,"pScaled":0.0262,"pRank":13,"nSamples":500,"individualID.1":38,"individualID.2":40,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":573,"infectionDiff":1089,"infectionDiffY":2.98356,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"038_045","label":"SNPs","pAvg":0.00382,"pSD":0.01175,"pScaled":0.00231,"pRank":41,"nSamples":500,"individualID.1":38,"individualID.2":45,"transmission":false,"snpDist":15,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":947,"infectionDiff":600,"infectionDiffY":1.64384,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"038_047","label":"SNPs","pAvg":0.00336,"pSD":0.01037,"pScaled":0.00072,"pRank":43,"nSamples":500,"individualID.1":38,"individualID.2":47,"transmission":false,"snpDist":13,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":-202,"infectionDiff":286,"infectionDiffY":0.78356,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"038_051","label":"SNPs","pAvg":0.0283,"pSD":0.0064,"pScaled":0.0134,"pRank":15,"nSamples":50,"individualID.1":38,"individualID.2":51,"transmission":false,"snpDist":8,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-415,"infectionDiff":77,"infectionDiffY":0.21096,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"038_052","label":"SNPs","pAvg":0.03666,"pSD":0.00809,"pScaled":0.01375,"pRank":10,"nSamples":50,"individualID.1":38,"individualID.2":52,"transmission":false,"snpDist":9,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1417,"infectionDiff":1105,"infectionDiffY":3.0274,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"038_053","label":"SNPs","pAvg":0.06857,"pSD":0.01576,"pScaled":0.04579,"pRank":2,"nSamples":50,"individualID.1":38,"individualID.2":53,"transmission":false,"snpDist":3,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":105,"infectionDiff":570,"infectionDiffY":1.56164,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"038_054","label":"SNPs","pAvg":0.00752,"pSD":0.00344,"pScaled":0.00196,"pRank":29,"nSamples":50,"individualID.1":38,"individualID.2":54,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1276,"infectionDiff":1494,"infectionDiffY":4.09315,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"038_055","label":"SNPs","pAvg":0.01522,"pSD":0.0043,"pScaled":0.00467,"pRank":14,"nSamples":50,"individualID.1":38,"individualID.2":55,"transmission":false,"snpDist":3,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":259,"infectionDiff":761,"infectionDiffY":2.08493,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"038_056","label":"SNPs","pAvg":0.05658,"pSD":0.01485,"pScaled":0.01352,"pRank":7,"nSamples":50,"individualID.1":38,"individualID.2":56,"transmission":false,"snpDist":3,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":683,"infectionDiff":846,"infectionDiffY":2.31781,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"038_057","label":"SNPs","pAvg":0.01681,"pSD":0.00692,"pScaled":0.00336,"pRank":20,"nSamples":50,"individualID.1":38,"individualID.2":57,"transmission":false,"snpDist":4,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1246,"infectionDiff":1496,"infectionDiffY":4.09863,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"038_058","label":"SNPs","pAvg":0.03525,"pSD":0.00825,"pScaled":0.03479,"pRank":8,"nSamples":500,"individualID.1":38,"individualID.2":58,"transmission":true,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1531,"infectionDiff":1185,"infectionDiffY":3.24658,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"038_060","label":"SNPs","pAvg":0.00905,"pSD":0.00177,"pScaled":0.00439,"pRank":34,"nSamples":50,"individualID.1":38,"individualID.2":60,"transmission":false,"snpDist":9,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1573,"infectionDiff":1826,"infectionDiffY":5.00274,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"038_061","label":"SNPs","pAvg":0.0177,"pSD":0.00575,"pScaled":0.0336,"pRank":10,"nSamples":500,"individualID.1":38,"individualID.2":61,"transmission":false,"snpDist":8,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1365,"infectionDiff":1044,"infectionDiffY":2.86027,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"038_064","label":"SNPs","pAvg":0.03661,"pSD":0.00722,"pScaled":0.0139,"pRank":4,"nSamples":50,"individualID.1":38,"individualID.2":64,"transmission":false,"snpDist":4,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":315,"infectionDiff":725,"infectionDiffY":1.9863,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"038_065","label":"SNPs","pAvg":0.04677,"pSD":0.01369,"pScaled":0.03609,"pRank":2,"nSamples":50,"individualID.1":38,"individualID.2":65,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":323,"infectionDiff":659,"infectionDiffY":1.80548,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"038_066","label":"SNPs","pAvg":0.03181,"pSD":0.00831,"pScaled":0.0084,"pRank":9,"nSamples":50,"individualID.1":38,"individualID.2":66,"transmission":false,"snpDist":4,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":470,"infectionDiff":805,"infectionDiffY":2.20548,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"038_067","label":"SNPs","pAvg":0.01699,"pSD":0.00347,"pScaled":0.00429,"pRank":27,"nSamples":50,"individualID.1":38,"individualID.2":67,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1592,"infectionDiff":1890,"infectionDiffY":5.17808,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"038_068","label":"SNPs","pAvg":0.00539,"pSD":0.00243,"pScaled":0.00118,"pRank":64,"nSamples":50,"individualID.1":38,"individualID.2":68,"transmission":false,"snpDist":6,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":1198,"infectionDiff":1542,"infectionDiffY":4.22466,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"038_069","label":"SNPs","pAvg":0.00456,"pSD":0.00189,"pScaled":0.00146,"pRank":34,"nSamples":50,"individualID.1":38,"individualID.2":69,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1243,"infectionDiff":1569,"infectionDiffY":4.29863,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"038_071","label":"SNPs","pAvg":0.05833,"pSD":0.0121,"pScaled":0.05935,"pRank":4,"nSamples":500,"individualID.1":38,"individualID.2":71,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":1298,"infectionDiff":245,"infectionDiffY":0.67123,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"038_072","label":"SNPs","pAvg":0.00097,"pSD":0.003,"pScaled":0.00029,"pRank":42,"nSamples":500,"individualID.1":38,"individualID.2":72,"transmission":false,"snpDist":14,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":-261,"infectionDiff":164,"infectionDiffY":0.44932,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"038_073","label":"SNPs","pAvg":0.01069,"pSD":0.00402,"pScaled":0.00787,"pRank":14,"nSamples":50,"individualID.1":38,"individualID.2":73,"transmission":false,"snpDist":10,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":820,"infectionDiff":915,"infectionDiffY":2.50685,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"038_074","label":"SNPs","pAvg":0.01015,"pSD":0.00231,"pScaled":0.00557,"pRank":4,"nSamples":50,"individualID.1":38,"individualID.2":74,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":660,"infectionDiff":296,"infectionDiffY":0.81096,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"038_075","label":"SNPs","pAvg":0.00313,"pSD":0.00084,"pScaled":0.01361,"pRank":20,"nSamples":500,"individualID.1":38,"individualID.2":75,"transmission":false,"snpDist":7,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1326,"infectionDiff":1869,"infectionDiffY":5.12055,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"038_076","label":"SNPs","pAvg":0.00756,"pSD":0.00336,"pScaled":0.00185,"pRank":47,"nSamples":50,"individualID.1":38,"individualID.2":76,"transmission":false,"snpDist":6,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1561,"infectionDiff":1542,"infectionDiffY":4.22466,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"038_077","label":"SNPs","pAvg":0.01867,"pSD":0.00478,"pScaled":0.00413,"pRank":22,"nSamples":50,"individualID.1":38,"individualID.2":77,"transmission":false,"snpDist":5,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":714,"infectionDiff":1257,"infectionDiffY":3.44384,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"038_078","label":"SNPs","pAvg":0.00796,"pSD":0.00325,"pScaled":0.00176,"pRank":58,"nSamples":50,"individualID.1":38,"individualID.2":78,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1405,"infectionDiff":1570,"infectionDiffY":4.30137,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"038_079","label":"SNPs","pAvg":0.00647,"pSD":0.00214,"pScaled":0.00325,"pRank":19,"nSamples":50,"individualID.1":38,"individualID.2":79,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":813,"infectionDiff":854,"infectionDiffY":2.33973,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"038_080","label":"SNPs","pAvg":0.00068,"pSD":0.00212,"pScaled":0.00497,"pRank":40,"nSamples":500,"individualID.1":38,"individualID.2":80,"transmission":false,"snpDist":12,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":822,"infectionDiff":786,"infectionDiffY":2.15342,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"038_081","label":"SNPs","pAvg":0.00329,"pSD":0.00116,"pScaled":0.00082,"pRank":58,"nSamples":50,"individualID.1":38,"individualID.2":81,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1538,"infectionDiff":1953,"infectionDiffY":5.35068,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"038_082","label":"SNPs","pAvg":0.0052,"pSD":0.00131,"pScaled":0.00113,"pRank":60,"nSamples":50,"individualID.1":38,"individualID.2":82,"transmission":false,"snpDist":7,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1542,"infectionDiff":2030,"infectionDiffY":5.56164,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"038_083","label":"SNPs","pAvg":0.00545,"pSD":0.0025,"pScaled":0.00212,"pRank":56,"nSamples":50,"individualID.1":38,"individualID.2":83,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1318,"infectionDiff":1500,"infectionDiffY":4.10959,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"038_084","label":"SNPs","pAvg":0.00018,"pSD":0.0006,"pScaled":0.00009,"pRank":75,"nSamples":500,"individualID.1":38,"individualID.2":84,"transmission":false,"snpDist":18,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1561,"infectionDiff":1548,"infectionDiffY":4.2411,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"038_085","label":"SNPs","pAvg":0.00034,"pSD":0.00107,"pScaled":0.00011,"pRank":61,"nSamples":500,"individualID.1":38,"individualID.2":85,"transmission":false,"snpDist":16,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":673,"infectionDiff":1213,"infectionDiffY":3.32329,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"038_086","label":"SNPs","pAvg":0.0152,"pSD":0.00469,"pScaled":0.00484,"pRank":10,"nSamples":50,"individualID.1":38,"individualID.2":86,"transmission":false,"snpDist":9,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":511,"infectionDiff":841,"infectionDiffY":2.30411,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"038_087","label":"SNPs","pAvg":0.00126,"pSD":0.00402,"pScaled":0.00103,"pRank":39,"nSamples":500,"individualID.1":38,"individualID.2":87,"transmission":false,"snpDist":13,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":1045,"infectionDiff":1380,"infectionDiffY":3.78082,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"038_088","label":"SNPs","pAvg":0.00457,"pSD":0.00202,"pScaled":0.00088,"pRank":66,"nSamples":50,"individualID.1":38,"individualID.2":88,"transmission":false,"snpDist":6,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":1155,"infectionDiff":1715,"infectionDiffY":4.69863,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"038_089","label":"SNPs","pAvg":0.00017,"pSD":0.00057,"pScaled":0.00005,"pRank":82,"nSamples":500,"individualID.1":38,"individualID.2":89,"transmission":false,"snpDist":17,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1447,"infectionDiff":1552,"infectionDiffY":4.25205,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"038_090","label":"SNPs","pAvg":0.00167,"pSD":0.00077,"pScaled":0.00043,"pRank":55,"nSamples":50,"individualID.1":38,"individualID.2":90,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1517,"infectionDiff":1778,"infectionDiffY":4.87123,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"038_091","label":"SNPs","pAvg":0.00098,"pSD":0.00319,"pScaled":0.00049,"pRank":48,"nSamples":500,"individualID.1":38,"individualID.2":91,"transmission":false,"snpDist":17,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1539,"infectionDiff":1369,"infectionDiffY":3.75068,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"038_092","label":"SNPs","pAvg":0.00019,"pSD":0.00061,"pScaled":0.00008,"pRank":73,"nSamples":500,"individualID.1":38,"individualID.2":92,"transmission":false,"snpDist":17,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1586,"infectionDiff":1520,"infectionDiffY":4.16438,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"038_093","label":"SNPs","pAvg":0.00018,"pSD":0.00062,"pScaled":0.00005,"pRank":90,"nSamples":500,"individualID.1":38,"individualID.2":93,"transmission":false,"snpDist":18,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1423,"infectionDiff":1746,"infectionDiffY":4.78356,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"038_094","label":"SNPs","pAvg":0.01095,"pSD":0.00252,"pScaled":0.00361,"pRank":22,"nSamples":50,"individualID.1":38,"individualID.2":94,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1469,"infectionDiff":2018,"infectionDiffY":5.52877,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"038_095","label":"SNPs","pAvg":0.00131,"pSD":0.00414,"pScaled":0.00066,"pRank":40,"nSamples":500,"individualID.1":38,"individualID.2":95,"transmission":false,"snpDist":13,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":1051,"infectionDiff":1449,"infectionDiffY":3.96986,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"038_096","label":"SNPs","pAvg":0.00519,"pSD":0.00209,"pScaled":0.00182,"pRank":28,"nSamples":50,"individualID.1":38,"individualID.2":96,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":1146,"infectionDiff":1681,"infectionDiffY":4.60548,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"038_097","label":"SNPs","pAvg":0.00476,"pSD":0.00107,"pScaled":0.00107,"pRank":49,"nSamples":50,"individualID.1":38,"individualID.2":97,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1389,"infectionDiff":1838,"infectionDiffY":5.03562,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"038_098","label":"SNPs","pAvg":0.00032,"pSD":0.00108,"pScaled":0.00009,"pRank":82,"nSamples":500,"individualID.1":38,"individualID.2":98,"transmission":false,"snpDist":17,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":1207,"infectionDiff":1610,"infectionDiffY":4.41096,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"038_099","label":"SNPs","pAvg":0.01045,"pSD":0.00409,"pScaled":0.00357,"pRank":22,"nSamples":50,"individualID.1":38,"individualID.2":99,"transmission":false,"snpDist":10,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":1190,"infectionDiff":1474,"infectionDiffY":4.03836,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"038_100","label":"SNPs","pAvg":0.00948,"pSD":0.00239,"pScaled":0.00279,"pRank":39,"nSamples":50,"individualID.1":38,"individualID.2":100,"transmission":false,"infectionDate.1":"1994-01-07 13:44:53","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1995-08-16 04:42:01","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1389,"infectionDiff":1852,"infectionDiffY":5.07397,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"039_009","label":"SNPs","pAvg":0.0035,"pSD":0.01081,"pScaled":0.01558,"pRank":19,"nSamples":500,"individualID.1":39,"individualID.2":9,"transmission":false,"snpDist":18,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":1246,"infectionDiff":672,"infectionDiffY":1.8411,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"039_014","label":"SNPs","pAvg":0.00571,"pSD":0.01764,"pScaled":0.00314,"pRank":30,"nSamples":500,"individualID.1":39,"individualID.2":14,"transmission":false,"snpDist":11,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":-723,"infectionDiff":250,"infectionDiffY":0.68493,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"039_017","label":"SNPs","pAvg":0.00638,"pSD":0.01967,"pScaled":0.00889,"pRank":24,"nSamples":500,"individualID.1":39,"individualID.2":17,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":415,"infectionDiff":22,"infectionDiffY":0.06027,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"039_018","label":"SNPs","pAvg":0.00213,"pSD":0.00657,"pScaled":0.00242,"pRank":37,"nSamples":500,"individualID.1":39,"individualID.2":18,"transmission":false,"snpDist":13,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":-830,"infectionDiff":446,"infectionDiffY":1.22192,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"039_021","label":"SNPs","pAvg":0.00462,"pSD":0.01455,"pScaled":0.00441,"pRank":34,"nSamples":500,"individualID.1":39,"individualID.2":21,"transmission":false,"snpDist":12,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":615,"infectionDiff":444,"infectionDiffY":1.21644,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"039_023","label":"SNPs","pAvg":0.00092,"pSD":0.00285,"pScaled":0.00041,"pRank":81,"nSamples":500,"individualID.1":39,"individualID.2":23,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1403,"infectionDiff":2211,"infectionDiffY":6.05753,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"039_026","label":"SNPs","pAvg":0.00149,"pSD":0.00485,"pScaled":0.00052,"pRank":57,"nSamples":500,"individualID.1":39,"individualID.2":26,"transmission":false,"snpDist":13,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1007,"infectionDiff":1508,"infectionDiffY":4.13151,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"039_027","label":"SNPs","pAvg":0.00104,"pSD":0.00322,"pScaled":0.00037,"pRank":77,"nSamples":500,"individualID.1":39,"individualID.2":27,"transmission":false,"snpDist":12,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1180,"infectionDiff":2098,"infectionDiffY":5.74795,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"039_028","label":"SNPs","pAvg":0.00319,"pSD":0.01001,"pScaled":0.00089,"pRank":50,"nSamples":500,"individualID.1":39,"individualID.2":28,"transmission":false,"snpDist":12,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":397,"infectionDiff":922,"infectionDiffY":2.52603,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"039_033","label":"SNPs","pAvg":0.00064,"pSD":0.00214,"pScaled":0.00029,"pRank":66,"nSamples":500,"individualID.1":39,"individualID.2":33,"transmission":false,"snpDist":15,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":624,"infectionDiff":1779,"infectionDiffY":4.87397,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"039_035","label":"SNPs","pAvg":0.02168,"pSD":0.00496,"pScaled":0.00564,"pRank":21,"nSamples":50,"individualID.1":39,"individualID.2":35,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":587,"infectionDiff":577,"infectionDiffY":1.58082,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"039_036","label":"SNPs","pAvg":0.02369,"pSD":0.00673,"pScaled":0.00641,"pRank":25,"nSamples":50,"individualID.1":39,"individualID.2":36,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":386,"infectionDiff":1387,"infectionDiffY":3.8,"timeCat":"4","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"039_037","label":"SNPs","pAvg":0.05146,"pSD":0.01429,"pScaled":0.05189,"pRank":6,"nSamples":500,"individualID.1":39,"individualID.2":37,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":773,"infectionDiff":909,"infectionDiffY":2.49041,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"039_038","label":"SNPs","pAvg":0.07507,"pSD":0.01844,"pScaled":0.08912,"pRank":1,"nSamples":500,"individualID.1":39,"individualID.2":38,"transmission":false,"snpDist":9,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":-165,"infectionDiff":554,"infectionDiffY":1.51781,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"039_040","label":"SNPs","pAvg":0.00841,"pSD":0.00346,"pScaled":0.00752,"pRank":40,"nSamples":500,"individualID.1":39,"individualID.2":40,"transmission":false,"snpDist":9,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":408,"infectionDiff":1643,"infectionDiffY":4.50137,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"039_043","label":"SNPs","pAvg":0.00289,"pSD":0.00902,"pScaled":0.0039,"pRank":28,"nSamples":500,"individualID.1":39,"individualID.2":43,"transmission":false,"snpDist":16,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":1383,"infectionDiff":262,"infectionDiffY":0.71781,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"039_044","label":"SNPs","pAvg":0.00282,"pSD":0.00872,"pScaled":0.00076,"pRank":29,"nSamples":500,"individualID.1":39,"individualID.2":44,"transmission":false,"snpDist":13,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":-997,"infectionDiff":164,"infectionDiffY":0.44932,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"039_045","label":"SNPs","pAvg":0.00183,"pSD":0.0058,"pScaled":0.00111,"pRank":46,"nSamples":500,"individualID.1":39,"individualID.2":45,"transmission":false,"snpDist":15,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":782,"infectionDiff":1154,"infectionDiffY":3.16164,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"039_046","label":"SNPs","pAvg":0.00866,"pSD":0.02664,"pScaled":0.00501,"pRank":23,"nSamples":500,"individualID.1":39,"individualID.2":46,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":-313,"infectionDiff":109,"infectionDiffY":0.29863,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"1","snpClose":false} {"pairID":"039_047","label":"SNPs","pAvg":0.00187,"pSD":0.00584,"pScaled":0.0004,"pRank":44,"nSamples":500,"individualID.1":39,"individualID.2":47,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":-367,"infectionDiff":840,"infectionDiffY":2.30137,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"039_048","label":"SNPs","pAvg":0.00428,"pSD":0.01318,"pScaled":0.00189,"pRank":32,"nSamples":500,"individualID.1":39,"individualID.2":48,"transmission":false,"snpDist":15,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":-84,"infectionDiff":374,"infectionDiffY":1.02466,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"039_051","label":"SNPs","pAvg":0.0229,"pSD":0.0051,"pScaled":0.01085,"pRank":19,"nSamples":50,"individualID.1":39,"individualID.2":51,"transmission":false,"snpDist":9,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-581,"infectionDiff":632,"infectionDiffY":1.73151,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"039_052","label":"SNPs","pAvg":0.01697,"pSD":0.0073,"pScaled":0.00637,"pRank":19,"nSamples":50,"individualID.1":39,"individualID.2":52,"transmission":false,"snpDist":10,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1252,"infectionDiff":1659,"infectionDiffY":4.54521,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"039_053","label":"SNPs","pAvg":0.03179,"pSD":0.00846,"pScaled":0.02123,"pRank":7,"nSamples":50,"individualID.1":39,"individualID.2":53,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":-60,"infectionDiff":1124,"infectionDiffY":3.07945,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"039_054","label":"SNPs","pAvg":0.00787,"pSD":0.00214,"pScaled":0.00205,"pRank":23,"nSamples":50,"individualID.1":39,"individualID.2":54,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1111,"infectionDiff":2048,"infectionDiffY":5.61096,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"039_055","label":"SNPs","pAvg":0.01026,"pSD":0.00375,"pScaled":0.00315,"pRank":18,"nSamples":50,"individualID.1":39,"individualID.2":55,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":94,"infectionDiff":1316,"infectionDiffY":3.60548,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"039_056","label":"SNPs","pAvg":0.03695,"pSD":0.00808,"pScaled":0.00883,"pRank":9,"nSamples":50,"individualID.1":39,"individualID.2":56,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":518,"infectionDiff":1400,"infectionDiffY":3.83562,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"039_057","label":"SNPs","pAvg":0.01777,"pSD":0.00378,"pScaled":0.00355,"pRank":17,"nSamples":50,"individualID.1":39,"individualID.2":57,"transmission":false,"snpDist":9,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1081,"infectionDiff":2050,"infectionDiffY":5.61644,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"039_058","label":"SNPs","pAvg":0.01634,"pSD":0.00682,"pScaled":0.01613,"pRank":18,"nSamples":500,"individualID.1":39,"individualID.2":58,"transmission":false,"snpDist":10,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1366,"infectionDiff":1739,"infectionDiffY":4.76438,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"039_059","label":"SNPs","pAvg":0.03308,"pSD":0.00772,"pScaled":0.04755,"pRank":7,"nSamples":500,"individualID.1":39,"individualID.2":59,"transmission":true,"snpDist":6,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":746,"infectionDiff":203,"infectionDiffY":0.55616,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"039_060","label":"SNPs","pAvg":0.00905,"pSD":0.00177,"pScaled":0.00439,"pRank":34,"nSamples":50,"individualID.1":39,"individualID.2":60,"transmission":false,"snpDist":10,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1407,"infectionDiff":2381,"infectionDiffY":6.52329,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"039_061","label":"SNPs","pAvg":0.00501,"pSD":0.0021,"pScaled":0.00952,"pRank":20,"nSamples":500,"individualID.1":39,"individualID.2":61,"transmission":false,"snpDist":9,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1200,"infectionDiff":1599,"infectionDiffY":4.38082,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"039_062","label":"SNPs","pAvg":0.00261,"pSD":0.00809,"pScaled":0.00069,"pRank":36,"nSamples":500,"individualID.1":39,"individualID.2":62,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":-65,"infectionDiff":503,"infectionDiffY":1.37808,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"039_063","label":"SNPs","pAvg":0.00211,"pSD":0.0065,"pScaled":0.00102,"pRank":29,"nSamples":500,"individualID.1":39,"individualID.2":63,"transmission":false,"snpDist":15,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":-633,"infectionDiff":298,"infectionDiffY":0.81644,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"039_064","label":"SNPs","pAvg":0.01807,"pSD":0.0055,"pScaled":0.00686,"pRank":9,"nSamples":50,"individualID.1":39,"individualID.2":64,"transmission":false,"snpDist":9,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":150,"infectionDiff":1280,"infectionDiffY":3.50685,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"039_065","label":"SNPs","pAvg":0.02106,"pSD":0.00629,"pScaled":0.01625,"pRank":4,"nSamples":50,"individualID.1":39,"individualID.2":65,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":158,"infectionDiff":1213,"infectionDiffY":3.32329,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"039_066","label":"SNPs","pAvg":0.01995,"pSD":0.00636,"pScaled":0.00527,"pRank":13,"nSamples":50,"individualID.1":39,"individualID.2":66,"transmission":false,"snpDist":9,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":305,"infectionDiff":1359,"infectionDiffY":3.72329,"timeCat":"4","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"039_067","label":"SNPs","pAvg":0.01699,"pSD":0.00347,"pScaled":0.00429,"pRank":27,"nSamples":50,"individualID.1":39,"individualID.2":67,"transmission":false,"snpDist":10,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1427,"infectionDiff":2445,"infectionDiffY":6.69863,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"039_068","label":"SNPs","pAvg":0.00531,"pSD":0.00141,"pScaled":0.00116,"pRank":66,"nSamples":50,"individualID.1":39,"individualID.2":68,"transmission":false,"snpDist":7,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":1033,"infectionDiff":2096,"infectionDiffY":5.74247,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"039_069","label":"SNPs","pAvg":0.00443,"pSD":0.00108,"pScaled":0.00142,"pRank":39,"nSamples":50,"individualID.1":39,"individualID.2":69,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1077,"infectionDiff":2123,"infectionDiffY":5.81644,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"039_070","label":"SNPs","pAvg":0.00465,"pSD":0.01448,"pScaled":0.00144,"pRank":35,"nSamples":500,"individualID.1":39,"individualID.2":70,"transmission":false,"snpDist":15,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":-386,"infectionDiff":541,"infectionDiffY":1.48219,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"039_071","label":"SNPs","pAvg":0.00336,"pSD":0.01065,"pScaled":0.00342,"pRank":33,"nSamples":500,"individualID.1":39,"individualID.2":71,"transmission":false,"snpDist":19,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":1133,"infectionDiff":799,"infectionDiffY":2.18904,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"039_072","label":"SNPs","pAvg":0.00075,"pSD":0.00232,"pScaled":0.00023,"pRank":43,"nSamples":500,"individualID.1":39,"individualID.2":72,"transmission":false,"snpDist":15,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":-426,"infectionDiff":718,"infectionDiffY":1.96712,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"039_073","label":"SNPs","pAvg":0.00034,"pSD":0.00114,"pScaled":0.00025,"pRank":61,"nSamples":500,"individualID.1":39,"individualID.2":73,"transmission":false,"snpDist":11,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":655,"infectionDiff":1470,"infectionDiffY":4.0274,"timeCat":"5","Z1":"0","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"039_074","label":"SNPs","pAvg":0.00612,"pSD":0.00224,"pScaled":0.00336,"pRank":14,"nSamples":50,"individualID.1":39,"individualID.2":74,"transmission":false,"snpDist":10,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":495,"infectionDiff":850,"infectionDiffY":2.32877,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"039_075","label":"SNPs","pAvg":0.00031,"pSD":0.00098,"pScaled":0.00136,"pRank":63,"nSamples":500,"individualID.1":39,"individualID.2":75,"transmission":false,"snpDist":12,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1161,"infectionDiff":2423,"infectionDiffY":6.63836,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"039_076","label":"SNPs","pAvg":0.00729,"pSD":0.002,"pScaled":0.00179,"pRank":51,"nSamples":50,"individualID.1":39,"individualID.2":76,"transmission":false,"snpDist":7,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1396,"infectionDiff":2096,"infectionDiffY":5.74247,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"039_077","label":"SNPs","pAvg":0.00872,"pSD":0.00386,"pScaled":0.00193,"pRank":31,"nSamples":50,"individualID.1":39,"individualID.2":77,"transmission":false,"snpDist":6,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":549,"infectionDiff":1812,"infectionDiffY":4.96438,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"039_078","label":"SNPs","pAvg":0.00867,"pSD":0.00167,"pScaled":0.00192,"pRank":48,"nSamples":50,"individualID.1":39,"individualID.2":78,"transmission":false,"snpDist":6,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1239,"infectionDiff":2124,"infectionDiffY":5.81918,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"039_079","label":"SNPs","pAvg":0.00037,"pSD":0.00119,"pScaled":0.00019,"pRank":58,"nSamples":500,"individualID.1":39,"individualID.2":79,"transmission":false,"snpDist":17,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":648,"infectionDiff":1408,"infectionDiffY":3.85753,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"039_080","label":"SNPs","pAvg":0.00043,"pSD":0.00138,"pScaled":0.00312,"pRank":46,"nSamples":500,"individualID.1":39,"individualID.2":80,"transmission":false,"snpDist":13,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":657,"infectionDiff":1340,"infectionDiffY":3.67123,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"039_081","label":"SNPs","pAvg":0.00329,"pSD":0.00116,"pScaled":0.00082,"pRank":58,"nSamples":50,"individualID.1":39,"individualID.2":81,"transmission":false,"snpDist":6,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1373,"infectionDiff":2507,"infectionDiffY":6.86849,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"039_082","label":"SNPs","pAvg":0.0052,"pSD":0.00131,"pScaled":0.00113,"pRank":60,"nSamples":50,"individualID.1":39,"individualID.2":82,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1377,"infectionDiff":2584,"infectionDiffY":7.07945,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"039_083","label":"SNPs","pAvg":0.00543,"pSD":0.00131,"pScaled":0.00211,"pRank":57,"nSamples":50,"individualID.1":39,"individualID.2":83,"transmission":false,"snpDist":8,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1152,"infectionDiff":2054,"infectionDiffY":5.6274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"039_084","label":"SNPs","pAvg":0.0002,"pSD":0.00061,"pScaled":0.0001,"pRank":72,"nSamples":500,"individualID.1":39,"individualID.2":84,"transmission":false,"snpDist":19,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1396,"infectionDiff":2102,"infectionDiffY":5.7589,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"039_085","label":"SNPs","pAvg":0.00014,"pSD":0.00048,"pScaled":0.00005,"pRank":67,"nSamples":500,"individualID.1":39,"individualID.2":85,"transmission":false,"snpDist":17,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":507,"infectionDiff":1767,"infectionDiffY":4.8411,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"039_086","label":"SNPs","pAvg":0.01047,"pSD":0.0034,"pScaled":0.00333,"pRank":12,"nSamples":50,"individualID.1":39,"individualID.2":86,"transmission":false,"snpDist":10,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":345,"infectionDiff":1395,"infectionDiffY":3.82192,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"039_087","label":"SNPs","pAvg":0.0006,"pSD":0.00186,"pScaled":0.00049,"pRank":47,"nSamples":500,"individualID.1":39,"individualID.2":87,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":880,"infectionDiff":1935,"infectionDiffY":5.30137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"039_088","label":"SNPs","pAvg":0.00446,"pSD":0.00093,"pScaled":0.00086,"pRank":67,"nSamples":50,"individualID.1":39,"individualID.2":88,"transmission":false,"snpDist":7,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":990,"infectionDiff":2269,"infectionDiffY":6.21644,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"039_089","label":"SNPs","pAvg":0.00017,"pSD":0.00055,"pScaled":0.00006,"pRank":80,"nSamples":500,"individualID.1":39,"individualID.2":89,"transmission":false,"snpDist":18,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1282,"infectionDiff":2106,"infectionDiffY":5.76986,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"039_090","label":"SNPs","pAvg":0.00017,"pSD":0.00054,"pScaled":0.00004,"pRank":88,"nSamples":500,"individualID.1":39,"individualID.2":90,"transmission":false,"snpDist":19,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1352,"infectionDiff":2332,"infectionDiffY":6.38904,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"039_091","label":"SNPs","pAvg":0.00045,"pSD":0.00138,"pScaled":0.00023,"pRank":69,"nSamples":500,"individualID.1":39,"individualID.2":91,"transmission":false,"snpDist":18,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1373,"infectionDiff":1923,"infectionDiffY":5.26849,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"039_092","label":"SNPs","pAvg":0.00019,"pSD":0.0006,"pScaled":0.00008,"pRank":71,"nSamples":500,"individualID.1":39,"individualID.2":92,"transmission":false,"snpDist":18,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1420,"infectionDiff":2074,"infectionDiffY":5.68219,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"039_093","label":"SNPs","pAvg":0.00018,"pSD":0.00058,"pScaled":0.00005,"pRank":87,"nSamples":500,"individualID.1":39,"individualID.2":93,"transmission":false,"snpDist":19,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1257,"infectionDiff":2300,"infectionDiffY":6.30137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"039_094","label":"SNPs","pAvg":0.00109,"pSD":0.00338,"pScaled":0.00036,"pRank":71,"nSamples":500,"individualID.1":39,"individualID.2":94,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1303,"infectionDiff":2572,"infectionDiffY":7.04658,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"039_095","label":"SNPs","pAvg":0.00061,"pSD":0.00189,"pScaled":0.00031,"pRank":48,"nSamples":500,"individualID.1":39,"individualID.2":95,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":886,"infectionDiff":2004,"infectionDiffY":5.49041,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"039_096","label":"SNPs","pAvg":0.00053,"pSD":0.00165,"pScaled":0.00019,"pRank":70,"nSamples":500,"individualID.1":39,"individualID.2":96,"transmission":false,"snpDist":14,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":980,"infectionDiff":2236,"infectionDiffY":6.12603,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"039_097","label":"SNPs","pAvg":0.00048,"pSD":0.00147,"pScaled":0.00011,"pRank":92,"nSamples":500,"individualID.1":39,"individualID.2":97,"transmission":false,"snpDist":18,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1223,"infectionDiff":2392,"infectionDiffY":6.55342,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"039_098","label":"SNPs","pAvg":0.00033,"pSD":0.00103,"pScaled":0.00009,"pRank":80,"nSamples":500,"individualID.1":39,"individualID.2":98,"transmission":false,"snpDist":18,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":1042,"infectionDiff":2165,"infectionDiffY":5.93151,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"039_099","label":"SNPs","pAvg":0.00105,"pSD":0.00326,"pScaled":0.00036,"pRank":56,"nSamples":500,"individualID.1":39,"individualID.2":99,"transmission":false,"snpDist":11,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":1025,"infectionDiff":2029,"infectionDiffY":5.5589,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"039_100","label":"SNPs","pAvg":0.00095,"pSD":0.00294,"pScaled":0.00028,"pRank":85,"nSamples":500,"individualID.1":39,"individualID.2":100,"transmission":false,"snpDist":11,"infectionDate.1":"1992-07-02 08:18:08","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1996-01-28 10:32:27","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1224,"infectionDiff":2407,"infectionDiffY":6.59452,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"040_023","label":"SNPs","pAvg":0.08534,"pSD":0.01728,"pScaled":0.03799,"pRank":4,"nSamples":50,"individualID.1":40,"individualID.2":23,"transmission":false,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":995,"infectionDiff":568,"infectionDiffY":1.55616,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"040_027","label":"SNPs","pAvg":0.06444,"pSD":0.01564,"pScaled":0.02301,"pRank":3,"nSamples":50,"individualID.1":40,"individualID.2":27,"transmission":false,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":772,"infectionDiff":454,"infectionDiffY":1.24384,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"040_033","label":"SNPs","pAvg":0.00313,"pSD":0.00961,"pScaled":0.00143,"pRank":53,"nSamples":500,"individualID.1":40,"individualID.2":33,"transmission":false,"snpDist":12,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":216,"infectionDiff":136,"infectionDiffY":0.3726,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"040_052","label":"SNPs","pAvg":0.05067,"pSD":0.00965,"pScaled":0.01901,"pRank":6,"nSamples":50,"individualID.1":40,"individualID.2":52,"transmission":false,"snpDist":7,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":844,"infectionDiff":16,"infectionDiffY":0.04384,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"040_054","label":"SNPs","pAvg":0.0241,"pSD":0.00659,"pScaled":0.00628,"pRank":12,"nSamples":50,"individualID.1":40,"individualID.2":54,"transmission":false,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":703,"infectionDiff":405,"infectionDiffY":1.10959,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"040_057","label":"SNPs","pAvg":0.04142,"pSD":0.00868,"pScaled":0.00828,"pRank":13,"nSamples":50,"individualID.1":40,"individualID.2":57,"transmission":false,"snpDist":8,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":673,"infectionDiff":407,"infectionDiffY":1.11507,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"040_058","label":"SNPs","pAvg":0.0507,"pSD":0.00955,"pScaled":0.05004,"pRank":4,"nSamples":500,"individualID.1":40,"individualID.2":58,"transmission":false,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":958,"infectionDiff":95,"infectionDiffY":0.26027,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"040_060","label":"SNPs","pAvg":0.9051,"pSD":0.28504,"pScaled":0.43855,"pRank":1,"nSamples":500,"individualID.1":40,"individualID.2":60,"transmission":true,"snpDist":1,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":999,"infectionDiff":737,"infectionDiffY":2.01918,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"040_067","label":"SNPs","pAvg":0.02917,"pSD":0.00794,"pScaled":0.00736,"pRank":17,"nSamples":50,"individualID.1":40,"individualID.2":67,"transmission":false,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1018,"infectionDiff":801,"infectionDiffY":2.19452,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"040_068","label":"SNPs","pAvg":0.03714,"pSD":0.0063,"pScaled":0.00811,"pRank":12,"nSamples":50,"individualID.1":40,"individualID.2":68,"transmission":false,"snpDist":4,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":625,"infectionDiff":453,"infectionDiffY":1.2411,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"040_069","label":"SNPs","pAvg":0.00828,"pSD":0.00212,"pScaled":0.00265,"pRank":24,"nSamples":50,"individualID.1":40,"individualID.2":69,"transmission":false,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":669,"infectionDiff":480,"infectionDiffY":1.31507,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"040_075","label":"SNPs","pAvg":0.00124,"pSD":0.00399,"pScaled":0.0054,"pRank":31,"nSamples":500,"individualID.1":40,"individualID.2":75,"transmission":false,"snpDist":11,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":753,"infectionDiff":780,"infectionDiffY":2.13699,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"040_076","label":"SNPs","pAvg":0.02447,"pSD":0.00635,"pScaled":0.006,"pRank":16,"nSamples":50,"individualID.1":40,"individualID.2":76,"transmission":false,"snpDist":4,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":987,"infectionDiff":453,"infectionDiffY":1.2411,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"040_077","label":"SNPs","pAvg":0.02652,"pSD":0.00481,"pScaled":0.00587,"pRank":17,"nSamples":50,"individualID.1":40,"individualID.2":77,"transmission":false,"snpDist":3,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":140,"infectionDiff":168,"infectionDiffY":0.46027,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"040_078","label":"SNPs","pAvg":0.07831,"pSD":0.01792,"pScaled":0.01734,"pRank":7,"nSamples":50,"individualID.1":40,"individualID.2":78,"transmission":false,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":831,"infectionDiff":481,"infectionDiffY":1.31781,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"040_081","label":"SNPs","pAvg":0.01312,"pSD":0.00473,"pScaled":0.00327,"pRank":16,"nSamples":50,"individualID.1":40,"individualID.2":81,"transmission":false,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":964,"infectionDiff":864,"infectionDiffY":2.36712,"timeCat":"3","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"040_082","label":"SNPs","pAvg":0.02584,"pSD":0.00922,"pScaled":0.00563,"pRank":16,"nSamples":50,"individualID.1":40,"individualID.2":82,"transmission":false,"snpDist":5,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":968,"infectionDiff":941,"infectionDiffY":2.57808,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"040_083","label":"SNPs","pAvg":0.03832,"pSD":0.0077,"pScaled":0.01491,"pRank":5,"nSamples":50,"individualID.1":40,"individualID.2":83,"transmission":false,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":744,"infectionDiff":411,"infectionDiffY":1.12603,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"040_084","label":"SNPs","pAvg":0.00215,"pSD":0.00661,"pScaled":0.00108,"pRank":23,"nSamples":500,"individualID.1":40,"individualID.2":84,"transmission":false,"snpDist":16,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":987,"infectionDiff":459,"infectionDiffY":1.25753,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"040_085","label":"SNPs","pAvg":0.0031,"pSD":0.00953,"pScaled":0.00106,"pRank":23,"nSamples":500,"individualID.1":40,"individualID.2":85,"transmission":false,"snpDist":14,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":99,"infectionDiff":124,"infectionDiffY":0.33973,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"040_087","label":"SNPs","pAvg":0.00117,"pSD":0.00362,"pScaled":0.00095,"pRank":40,"nSamples":500,"individualID.1":40,"individualID.2":87,"transmission":false,"snpDist":11,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":472,"infectionDiff":291,"infectionDiffY":0.79726,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"040_088","label":"SNPs","pAvg":0.04059,"pSD":0.01013,"pScaled":0.00786,"pRank":12,"nSamples":50,"individualID.1":40,"individualID.2":88,"transmission":false,"snpDist":4,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":582,"infectionDiff":626,"infectionDiffY":1.71507,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"040_089","label":"SNPs","pAvg":0.00247,"pSD":0.00774,"pScaled":0.00079,"pRank":25,"nSamples":500,"individualID.1":40,"individualID.2":89,"transmission":false,"snpDist":15,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":873,"infectionDiff":463,"infectionDiffY":1.26849,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"040_090","label":"SNPs","pAvg":0.02381,"pSD":0.0056,"pScaled":0.00617,"pRank":13,"nSamples":50,"individualID.1":40,"individualID.2":90,"transmission":false,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":944,"infectionDiff":689,"infectionDiffY":1.88767,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"040_091","label":"SNPs","pAvg":0.00514,"pSD":0.01579,"pScaled":0.00258,"pRank":20,"nSamples":500,"individualID.1":40,"individualID.2":91,"transmission":false,"snpDist":15,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":965,"infectionDiff":280,"infectionDiffY":0.76712,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"040_092","label":"SNPs","pAvg":0.00205,"pSD":0.00633,"pScaled":0.00083,"pRank":23,"nSamples":500,"individualID.1":40,"individualID.2":92,"transmission":false,"snpDist":15,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1012,"infectionDiff":431,"infectionDiffY":1.18082,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"040_093","label":"SNPs","pAvg":0.00264,"pSD":0.00818,"pScaled":0.00072,"pRank":30,"nSamples":500,"individualID.1":40,"individualID.2":93,"transmission":false,"snpDist":16,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":849,"infectionDiff":657,"infectionDiffY":1.8,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"040_094","label":"SNPs","pAvg":0.01222,"pSD":0.00365,"pScaled":0.00403,"pRank":21,"nSamples":50,"individualID.1":40,"individualID.2":94,"transmission":false,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":895,"infectionDiff":928,"infectionDiffY":2.54247,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"040_095","label":"SNPs","pAvg":0.00115,"pSD":0.0036,"pScaled":0.00059,"pRank":42,"nSamples":500,"individualID.1":40,"individualID.2":95,"transmission":false,"snpDist":11,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":478,"infectionDiff":360,"infectionDiffY":0.9863,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"040_096","label":"SNPs","pAvg":0.00828,"pSD":0.00189,"pScaled":0.0029,"pRank":21,"nSamples":50,"individualID.1":40,"individualID.2":96,"transmission":false,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":572,"infectionDiff":592,"infectionDiffY":1.62192,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"040_097","label":"SNPs","pAvg":0.031,"pSD":0.00931,"pScaled":0.00695,"pRank":15,"nSamples":50,"individualID.1":40,"individualID.2":97,"transmission":false,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":815,"infectionDiff":749,"infectionDiffY":2.05205,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"040_098","label":"SNPs","pAvg":0.00475,"pSD":0.01489,"pScaled":0.00135,"pRank":20,"nSamples":500,"individualID.1":40,"individualID.2":98,"transmission":false,"snpDist":15,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":634,"infectionDiff":521,"infectionDiffY":1.4274,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"040_099","label":"SNPs","pAvg":0.01394,"pSD":0.00374,"pScaled":0.00476,"pRank":17,"nSamples":50,"individualID.1":40,"individualID.2":99,"transmission":false,"snpDist":8,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":617,"infectionDiff":385,"infectionDiffY":1.05479,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"040_100","label":"SNPs","pAvg":0.01496,"pSD":0.00424,"pScaled":0.00441,"pRank":30,"nSamples":50,"individualID.1":40,"individualID.2":100,"transmission":false,"infectionDate.1":"1996-12-31 15:18:39","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1997-03-11 14:22:26","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":816,"infectionDiff":763,"infectionDiffY":2.09041,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"041_006","label":"SNPs","pAvg":0.09528,"pSD":0.01647,"pScaled":0.06085,"pRank":2,"nSamples":50,"individualID.1":41,"individualID.2":6,"transmission":false,"snpDist":10,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":-2535,"infectionDiff":145,"infectionDiffY":0.39726,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"041_009","label":"SNPs","pAvg":0.00292,"pSD":0.00918,"pScaled":0.01301,"pRank":23,"nSamples":500,"individualID.1":41,"individualID.2":9,"transmission":false,"snpDist":16,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":-12,"infectionDiff":828,"infectionDiffY":2.26849,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"041_014","label":"SNPs","pAvg":0.03924,"pSD":0.00818,"pScaled":0.02156,"pRank":13,"nSamples":50,"individualID.1":41,"individualID.2":14,"transmission":false,"snpDist":9,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":-1981,"infectionDiff":406,"infectionDiffY":1.11233,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"041_017","label":"SNPs","pAvg":0.00537,"pSD":0.01662,"pScaled":0.00748,"pRank":28,"nSamples":500,"individualID.1":41,"individualID.2":17,"transmission":false,"snpDist":12,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":-843,"infectionDiff":178,"infectionDiffY":0.48767,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"041_018","label":"SNPs","pAvg":0.00245,"pSD":0.0076,"pScaled":0.00278,"pRank":36,"nSamples":500,"individualID.1":41,"individualID.2":18,"transmission":false,"snpDist":11,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":-2088,"infectionDiff":603,"infectionDiffY":1.65205,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"041_021","label":"SNPs","pAvg":0.03975,"pSD":0.00869,"pScaled":0.03794,"pRank":12,"nSamples":500,"individualID.1":41,"individualID.2":21,"transmission":false,"snpDist":10,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":-643,"infectionDiff":600,"infectionDiffY":1.64384,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"041_023","label":"SNPs","pAvg":0.0011,"pSD":0.00339,"pScaled":0.00049,"pRank":78,"nSamples":500,"individualID.1":41,"individualID.2":23,"transmission":false,"snpDist":12,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":145,"infectionDiff":2367,"infectionDiffY":6.48493,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"041_026","label":"SNPs","pAvg":0.0013,"pSD":0.00425,"pScaled":0.00046,"pRank":58,"nSamples":500,"individualID.1":41,"individualID.2":26,"transmission":false,"snpDist":11,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":-250,"infectionDiff":1664,"infectionDiffY":4.5589,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"041_027","label":"SNPs","pAvg":0.00891,"pSD":0.00193,"pScaled":0.00318,"pRank":42,"nSamples":50,"individualID.1":41,"individualID.2":27,"transmission":false,"snpDist":10,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":-78,"infectionDiff":2254,"infectionDiffY":6.17534,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"041_028","label":"SNPs","pAvg":0.03826,"pSD":0.01152,"pScaled":0.01069,"pRank":19,"nSamples":50,"individualID.1":41,"individualID.2":28,"transmission":false,"snpDist":10,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":-861,"infectionDiff":1078,"infectionDiffY":2.95342,"timeCat":"3","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"041_030","label":"SNPs","pAvg":0.08084,"pSD":0.01363,"pScaled":0.05653,"pRank":2,"nSamples":50,"individualID.1":41,"individualID.2":30,"transmission":false,"snpDist":5,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":-2610,"infectionDiff":85,"infectionDiffY":0.23288,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"041_032","label":"SNPs","pAvg":0.00263,"pSD":0.00815,"pScaled":0.00179,"pRank":23,"nSamples":500,"individualID.1":41,"individualID.2":32,"transmission":false,"snpDist":13,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":-1180,"infectionDiff":31,"infectionDiffY":0.08493,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"041_033","label":"SNPs","pAvg":0.00085,"pSD":0.00265,"pScaled":0.00039,"pRank":64,"nSamples":500,"individualID.1":41,"individualID.2":33,"transmission":false,"snpDist":13,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":-634,"infectionDiff":1935,"infectionDiffY":5.30137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"041_035","label":"SNPs","pAvg":0.01689,"pSD":0.00561,"pScaled":0.00439,"pRank":26,"nSamples":50,"individualID.1":41,"individualID.2":35,"transmission":false,"snpDist":6,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":-671,"infectionDiff":733,"infectionDiffY":2.00822,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"041_036","label":"SNPs","pAvg":0.00897,"pSD":0.00406,"pScaled":0.00243,"pRank":45,"nSamples":50,"individualID.1":41,"individualID.2":36,"transmission":false,"snpDist":6,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":-872,"infectionDiff":1543,"infectionDiffY":4.2274,"timeCat":"5","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"041_037","label":"SNPs","pAvg":0.05882,"pSD":0.01537,"pScaled":0.05931,"pRank":3,"nSamples":500,"individualID.1":41,"individualID.2":37,"transmission":false,"snpDist":8,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":-485,"infectionDiff":1066,"infectionDiffY":2.92055,"timeCat":"3","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"041_038","label":"SNPs","pAvg":0.06538,"pSD":0.0147,"pScaled":0.07762,"pRank":3,"nSamples":500,"individualID.1":41,"individualID.2":38,"transmission":false,"snpDist":9,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":-1423,"infectionDiff":710,"infectionDiffY":1.94521,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"041_039","label":"SNPs","pAvg":0.08261,"pSD":0.01433,"pScaled":0.17823,"pRank":2,"nSamples":500,"individualID.1":41,"individualID.2":39,"transmission":false,"snpDist":10,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":-1258,"infectionDiff":156,"infectionDiffY":0.4274,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"041_040","label":"SNPs","pAvg":0.00974,"pSD":0.00398,"pScaled":0.00871,"pRank":31,"nSamples":500,"individualID.1":41,"individualID.2":40,"transmission":false,"snpDist":7,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":-850,"infectionDiff":1799,"infectionDiffY":4.92877,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"041_043","label":"SNPs","pAvg":0.00258,"pSD":0.00802,"pScaled":0.00349,"pRank":30,"nSamples":500,"individualID.1":41,"individualID.2":43,"transmission":false,"snpDist":14,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":125,"infectionDiff":419,"infectionDiffY":1.14795,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"041_044","label":"SNPs","pAvg":0.00322,"pSD":0.00998,"pScaled":0.00087,"pRank":28,"nSamples":500,"individualID.1":41,"individualID.2":44,"transmission":false,"snpDist":11,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":-2254,"infectionDiff":320,"infectionDiffY":0.87671,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"041_045","label":"SNPs","pAvg":0.00216,"pSD":0.00671,"pScaled":0.00131,"pRank":44,"nSamples":500,"individualID.1":41,"individualID.2":45,"transmission":false,"snpDist":14,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":-476,"infectionDiff":1310,"infectionDiffY":3.58904,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"041_046","label":"SNPs","pAvg":0.00965,"pSD":0.02969,"pScaled":0.00558,"pRank":21,"nSamples":500,"individualID.1":41,"individualID.2":46,"transmission":false,"snpDist":12,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":-1571,"infectionDiff":265,"infectionDiffY":0.72603,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"1","snpClose":false} {"pairID":"041_047","label":"SNPs","pAvg":0.0016,"pSD":0.00501,"pScaled":0.00035,"pRank":45,"nSamples":500,"individualID.1":41,"individualID.2":47,"transmission":false,"snpDist":12,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":-1625,"infectionDiff":996,"infectionDiffY":2.72877,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"041_048","label":"SNPs","pAvg":0.00364,"pSD":0.01113,"pScaled":0.0016,"pRank":35,"nSamples":500,"individualID.1":41,"individualID.2":48,"transmission":false,"snpDist":13,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":-1342,"infectionDiff":530,"infectionDiffY":1.45205,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"041_049","label":"SNPs","pAvg":0.00547,"pSD":0.01681,"pScaled":0.00358,"pRank":22,"nSamples":500,"individualID.1":41,"individualID.2":49,"transmission":false,"snpDist":13,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":-1607,"infectionDiff":148,"infectionDiffY":0.40548,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"041_051","label":"SNPs","pAvg":0.01861,"pSD":0.00543,"pScaled":0.00881,"pRank":24,"nSamples":50,"individualID.1":41,"individualID.2":51,"transmission":false,"snpDist":7,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-1838,"infectionDiff":788,"infectionDiffY":2.1589,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"041_052","label":"SNPs","pAvg":0.01493,"pSD":0.00701,"pScaled":0.0056,"pRank":23,"nSamples":50,"individualID.1":41,"individualID.2":52,"transmission":false,"snpDist":8,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":-6,"infectionDiff":1815,"infectionDiffY":4.9726,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"041_053","label":"SNPs","pAvg":0.03568,"pSD":0.00904,"pScaled":0.02383,"pRank":5,"nSamples":50,"individualID.1":41,"individualID.2":53,"transmission":false,"snpDist":8,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":-1318,"infectionDiff":1280,"infectionDiffY":3.50685,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"041_054","label":"SNPs","pAvg":0.00907,"pSD":0.00239,"pScaled":0.00236,"pRank":21,"nSamples":50,"individualID.1":41,"individualID.2":54,"transmission":false,"snpDist":8,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":-147,"infectionDiff":2204,"infectionDiffY":6.03836,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"041_055","label":"SNPs","pAvg":0.00486,"pSD":0.00207,"pScaled":0.00149,"pRank":32,"nSamples":50,"individualID.1":41,"individualID.2":55,"transmission":false,"snpDist":8,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":-1164,"infectionDiff":1472,"infectionDiffY":4.03288,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"041_056","label":"SNPs","pAvg":0.01428,"pSD":0.00603,"pScaled":0.00341,"pRank":19,"nSamples":50,"individualID.1":41,"individualID.2":56,"transmission":false,"snpDist":8,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":-740,"infectionDiff":1556,"infectionDiffY":4.26301,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"041_057","label":"SNPs","pAvg":0.01542,"pSD":0.00328,"pScaled":0.00308,"pRank":21,"nSamples":50,"individualID.1":41,"individualID.2":57,"transmission":false,"snpDist":9,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":-177,"infectionDiff":2206,"infectionDiffY":6.04384,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"041_058","label":"SNPs","pAvg":0.01472,"pSD":0.00346,"pScaled":0.01453,"pRank":20,"nSamples":500,"individualID.1":41,"individualID.2":58,"transmission":false,"snpDist":10,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":108,"infectionDiff":1895,"infectionDiffY":5.19178,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"041_059","label":"SNPs","pAvg":0.02873,"pSD":0.00666,"pScaled":0.0413,"pRank":9,"nSamples":500,"individualID.1":41,"individualID.2":59,"transmission":false,"snpDist":10,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":-512,"infectionDiff":359,"infectionDiffY":0.98356,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"041_060","label":"SNPs","pAvg":0.01019,"pSD":0.00203,"pScaled":0.00494,"pRank":29,"nSamples":50,"individualID.1":41,"individualID.2":60,"transmission":false,"snpDist":8,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":149,"infectionDiff":2537,"infectionDiffY":6.95068,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"041_061","label":"SNPs","pAvg":0.00434,"pSD":0.00185,"pScaled":0.00823,"pRank":27,"nSamples":500,"individualID.1":41,"individualID.2":61,"transmission":false,"snpDist":7,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":-58,"infectionDiff":1755,"infectionDiffY":4.80822,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"041_062","label":"SNPs","pAvg":0.00215,"pSD":0.00659,"pScaled":0.00057,"pRank":38,"nSamples":500,"individualID.1":41,"individualID.2":62,"transmission":false,"snpDist":12,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":-1323,"infectionDiff":659,"infectionDiffY":1.80548,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"041_063","label":"SNPs","pAvg":0.00142,"pSD":0.00439,"pScaled":0.00068,"pRank":33,"nSamples":500,"individualID.1":41,"individualID.2":63,"transmission":false,"snpDist":13,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":-1891,"infectionDiff":454,"infectionDiffY":1.24384,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"041_064","label":"SNPs","pAvg":0.02056,"pSD":0.00556,"pScaled":0.00781,"pRank":7,"nSamples":50,"individualID.1":41,"individualID.2":64,"transmission":false,"snpDist":9,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":-1108,"infectionDiff":1436,"infectionDiffY":3.93425,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"041_065","label":"SNPs","pAvg":0.01764,"pSD":0.00535,"pScaled":0.01361,"pRank":6,"nSamples":50,"individualID.1":41,"individualID.2":65,"transmission":false,"snpDist":8,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":-1100,"infectionDiff":1369,"infectionDiffY":3.75068,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"041_066","label":"SNPs","pAvg":0.01043,"pSD":0.00462,"pScaled":0.00276,"pRank":22,"nSamples":50,"individualID.1":41,"individualID.2":66,"transmission":false,"snpDist":9,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":-953,"infectionDiff":1515,"infectionDiffY":4.15068,"timeCat":"5","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"041_067","label":"SNPs","pAvg":0.01472,"pSD":0.00305,"pScaled":0.00371,"pRank":34,"nSamples":50,"individualID.1":41,"individualID.2":67,"transmission":false,"snpDist":10,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":169,"infectionDiff":2601,"infectionDiffY":7.12603,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"041_068","label":"SNPs","pAvg":0.00453,"pSD":0.00108,"pScaled":0.00099,"pRank":70,"nSamples":50,"individualID.1":41,"individualID.2":68,"transmission":false,"snpDist":5,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":-225,"infectionDiff":2253,"infectionDiffY":6.1726,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"041_069","label":"SNPs","pAvg":0.00514,"pSD":0.0013,"pScaled":0.00165,"pRank":29,"nSamples":50,"individualID.1":41,"individualID.2":69,"transmission":false,"snpDist":5,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":-180,"infectionDiff":2279,"infectionDiffY":6.24384,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"041_070","label":"SNPs","pAvg":0.00402,"pSD":0.01238,"pScaled":0.00125,"pRank":38,"nSamples":500,"individualID.1":41,"individualID.2":70,"transmission":false,"snpDist":13,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":-1644,"infectionDiff":697,"infectionDiffY":1.90959,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"041_071","label":"SNPs","pAvg":0.00299,"pSD":0.00935,"pScaled":0.00304,"pRank":35,"nSamples":500,"individualID.1":41,"individualID.2":71,"transmission":false,"snpDist":17,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":-125,"infectionDiff":956,"infectionDiffY":2.61918,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"041_072","label":"SNPs","pAvg":0.00063,"pSD":0.00199,"pScaled":0.00019,"pRank":44,"nSamples":500,"individualID.1":41,"individualID.2":72,"transmission":false,"snpDist":13,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":-1684,"infectionDiff":875,"infectionDiffY":2.39726,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"041_073","label":"SNPs","pAvg":0.00394,"pSD":0.00184,"pScaled":0.0029,"pRank":23,"nSamples":50,"individualID.1":41,"individualID.2":73,"transmission":false,"snpDist":9,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":-603,"infectionDiff":1626,"infectionDiffY":4.45479,"timeCat":"5","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"041_074","label":"SNPs","pAvg":0.00521,"pSD":0.00201,"pScaled":0.00286,"pRank":16,"nSamples":50,"individualID.1":41,"individualID.2":74,"transmission":false,"snpDist":8,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":-763,"infectionDiff":1006,"infectionDiffY":2.75616,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"041_075","label":"SNPs","pAvg":0.00036,"pSD":0.00111,"pScaled":0.00156,"pRank":56,"nSamples":500,"individualID.1":41,"individualID.2":75,"transmission":false,"snpDist":12,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-97,"infectionDiff":2579,"infectionDiffY":7.06575,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"041_076","label":"SNPs","pAvg":0.00846,"pSD":0.00221,"pScaled":0.00207,"pRank":40,"nSamples":50,"individualID.1":41,"individualID.2":76,"transmission":false,"snpDist":5,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":138,"infectionDiff":2253,"infectionDiffY":6.1726,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"041_077","label":"SNPs","pAvg":0.00702,"pSD":0.00202,"pScaled":0.00155,"pRank":42,"nSamples":50,"individualID.1":41,"individualID.2":77,"transmission":false,"snpDist":4,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":-709,"infectionDiff":1968,"infectionDiffY":5.39178,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"041_078","label":"SNPs","pAvg":0.01009,"pSD":0.0022,"pScaled":0.00223,"pRank":42,"nSamples":50,"individualID.1":41,"individualID.2":78,"transmission":false,"snpDist":4,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":-18,"infectionDiff":2281,"infectionDiffY":6.24932,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"041_079","label":"SNPs","pAvg":0.00016,"pSD":0.00053,"pScaled":0.00008,"pRank":60,"nSamples":500,"individualID.1":41,"individualID.2":79,"transmission":false,"snpDist":15,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":-610,"infectionDiff":1564,"infectionDiffY":4.28493,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"041_080","label":"SNPs","pAvg":0.00017,"pSD":0.00058,"pScaled":0.00123,"pRank":56,"nSamples":500,"individualID.1":41,"individualID.2":80,"transmission":false,"snpDist":11,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":-601,"infectionDiff":1496,"infectionDiffY":4.09863,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"041_081","label":"SNPs","pAvg":0.00381,"pSD":0.00134,"pScaled":0.00095,"pRank":50,"nSamples":50,"individualID.1":41,"individualID.2":81,"transmission":false,"snpDist":4,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":115,"infectionDiff":2663,"infectionDiffY":7.29589,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"041_082","label":"SNPs","pAvg":0.00448,"pSD":0.00115,"pScaled":0.00098,"pRank":69,"nSamples":50,"individualID.1":41,"individualID.2":82,"transmission":false,"snpDist":6,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":119,"infectionDiff":2740,"infectionDiffY":7.50685,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"041_083","label":"SNPs","pAvg":0.00468,"pSD":0.00103,"pScaled":0.00182,"pRank":63,"nSamples":50,"individualID.1":41,"individualID.2":83,"transmission":false,"snpDist":6,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":-105,"infectionDiff":2210,"infectionDiffY":6.05479,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"041_084","label":"SNPs","pAvg":0.00017,"pSD":0.00053,"pScaled":0.00009,"pRank":76,"nSamples":500,"individualID.1":41,"individualID.2":84,"transmission":false,"snpDist":17,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":138,"infectionDiff":2258,"infectionDiffY":6.1863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"041_085","label":"SNPs","pAvg":0.00019,"pSD":0.00059,"pScaled":0.00006,"pRank":62,"nSamples":500,"individualID.1":41,"individualID.2":85,"transmission":false,"snpDist":15,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":-750,"infectionDiff":1923,"infectionDiffY":5.26849,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"041_086","label":"SNPs","pAvg":0.00509,"pSD":0.00215,"pScaled":0.00162,"pRank":22,"nSamples":50,"individualID.1":41,"individualID.2":86,"transmission":false,"snpDist":8,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":-912,"infectionDiff":1551,"infectionDiffY":4.24932,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"041_087","label":"SNPs","pAvg":0.00054,"pSD":0.00166,"pScaled":0.00044,"pRank":51,"nSamples":500,"individualID.1":41,"individualID.2":87,"transmission":false,"snpDist":12,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":-378,"infectionDiff":2091,"infectionDiffY":5.72877,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"041_088","label":"SNPs","pAvg":0.00516,"pSD":0.00127,"pScaled":0.001,"pRank":60,"nSamples":50,"individualID.1":41,"individualID.2":88,"transmission":false,"snpDist":5,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-268,"infectionDiff":2426,"infectionDiffY":6.64658,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"041_089","label":"SNPs","pAvg":0.0002,"pSD":0.00064,"pScaled":0.00007,"pRank":76,"nSamples":500,"individualID.1":41,"individualID.2":89,"transmission":false,"snpDist":16,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":24,"infectionDiff":2262,"infectionDiffY":6.19726,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"041_090","label":"SNPs","pAvg":0.00019,"pSD":0.0006,"pScaled":0.00005,"pRank":85,"nSamples":500,"individualID.1":41,"individualID.2":90,"transmission":false,"snpDist":17,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":94,"infectionDiff":2488,"infectionDiffY":6.81644,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"041_091","label":"SNPs","pAvg":0.00053,"pSD":0.00162,"pScaled":0.00026,"pRank":64,"nSamples":500,"individualID.1":41,"individualID.2":91,"transmission":false,"snpDist":16,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":115,"infectionDiff":2080,"infectionDiffY":5.69863,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"041_092","label":"SNPs","pAvg":0.00016,"pSD":0.00052,"pScaled":0.00007,"pRank":75,"nSamples":500,"individualID.1":41,"individualID.2":92,"transmission":false,"snpDist":16,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":162,"infectionDiff":2231,"infectionDiffY":6.11233,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"041_093","label":"SNPs","pAvg":0.00021,"pSD":0.00067,"pScaled":0.00006,"pRank":83,"nSamples":500,"individualID.1":41,"individualID.2":93,"transmission":false,"snpDist":17,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":-0,"infectionDiff":2456,"infectionDiffY":6.72877,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"041_094","label":"SNPs","pAvg":0.00097,"pSD":0.00296,"pScaled":0.00032,"pRank":72,"nSamples":500,"individualID.1":41,"individualID.2":94,"transmission":false,"snpDist":12,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":45,"infectionDiff":2728,"infectionDiffY":7.47397,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"041_095","label":"SNPs","pAvg":0.00054,"pSD":0.00167,"pScaled":0.00027,"pRank":51,"nSamples":500,"individualID.1":41,"individualID.2":95,"transmission":false,"snpDist":12,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":-372,"infectionDiff":2160,"infectionDiffY":5.91781,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"041_096","label":"SNPs","pAvg":0.00048,"pSD":0.00147,"pScaled":0.00017,"pRank":72,"nSamples":500,"individualID.1":41,"individualID.2":96,"transmission":false,"snpDist":12,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-277,"infectionDiff":2392,"infectionDiffY":6.55342,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"041_097","label":"SNPs","pAvg":0.00054,"pSD":0.00169,"pScaled":0.00012,"pRank":88,"nSamples":500,"individualID.1":41,"individualID.2":97,"transmission":false,"snpDist":16,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":-34,"infectionDiff":2548,"infectionDiffY":6.98082,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"041_098","label":"SNPs","pAvg":0.00039,"pSD":0.00122,"pScaled":0.00011,"pRank":77,"nSamples":500,"individualID.1":41,"individualID.2":98,"transmission":false,"snpDist":16,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":-216,"infectionDiff":2321,"infectionDiffY":6.3589,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"041_099","label":"SNPs","pAvg":0.0089,"pSD":0.00177,"pScaled":0.00304,"pRank":24,"nSamples":50,"individualID.1":41,"individualID.2":99,"transmission":false,"snpDist":9,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":-233,"infectionDiff":2185,"infectionDiffY":5.9863,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"041_100","label":"SNPs","pAvg":0.00816,"pSD":0.00231,"pScaled":0.00241,"pRank":48,"nSamples":50,"individualID.1":41,"individualID.2":100,"transmission":false,"snpDist":9,"infectionDate.1":"1992-01-28 05:01:53","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-07-09 07:13:59","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":-34,"infectionDiff":2563,"infectionDiffY":7.02192,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"042_006","label":"SNPs","pAvg":0.04813,"pSD":0.01348,"pScaled":0.03074,"pRank":6,"nSamples":50,"individualID.1":42,"individualID.2":6,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":61,"infectionDiff":494,"infectionDiffY":1.35342,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"042_009","label":"SNPs","pAvg":0.00111,"pSD":0.00351,"pScaled":0.00496,"pRank":36,"nSamples":500,"individualID.1":42,"individualID.2":9,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":2585,"infectionDiff":1177,"infectionDiffY":3.22466,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"042_010","label":"SNPs","pAvg":0.0449,"pSD":0.00985,"pScaled":0.03253,"pRank":2,"nSamples":50,"individualID.1":42,"individualID.2":10,"transmission":false,"snpDist":5,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":36,"infectionDiff":218,"infectionDiffY":0.59726,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"042_014","label":"SNPs","pAvg":0.04831,"pSD":0.01393,"pScaled":0.02654,"pRank":6,"nSamples":50,"individualID.1":42,"individualID.2":14,"transmission":false,"snpDist":5,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":616,"infectionDiff":754,"infectionDiffY":2.06575,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"042_017","label":"SNPs","pAvg":0.06943,"pSD":0.01542,"pScaled":0.09678,"pRank":2,"nSamples":500,"individualID.1":42,"individualID.2":17,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":1754,"infectionDiff":526,"infectionDiffY":1.4411,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"042_018","label":"SNPs","pAvg":0.02944,"pSD":0.009,"pScaled":0.03337,"pRank":11,"nSamples":500,"individualID.1":42,"individualID.2":18,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":508,"infectionDiff":951,"infectionDiffY":2.60548,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"042_021","label":"SNPs","pAvg":0.04857,"pSD":0.01426,"pScaled":0.04636,"pRank":5,"nSamples":500,"individualID.1":42,"individualID.2":21,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":1953,"infectionDiff":948,"infectionDiffY":2.59726,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"042_023","label":"SNPs","pAvg":0.01825,"pSD":0.00414,"pScaled":0.00812,"pRank":20,"nSamples":50,"individualID.1":42,"individualID.2":23,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":2742,"infectionDiff":2716,"infectionDiffY":7.4411,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"042_026","label":"SNPs","pAvg":0.00846,"pSD":0.00155,"pScaled":0.00297,"pRank":26,"nSamples":50,"individualID.1":42,"individualID.2":26,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":2346,"infectionDiff":2013,"infectionDiffY":5.51507,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"042_027","label":"SNPs","pAvg":0.01519,"pSD":0.00354,"pScaled":0.00542,"pRank":24,"nSamples":50,"individualID.1":42,"individualID.2":27,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":2519,"infectionDiff":2602,"infectionDiffY":7.12877,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"042_028","label":"SNPs","pAvg":0.03837,"pSD":0.00982,"pScaled":0.01072,"pRank":18,"nSamples":50,"individualID.1":42,"individualID.2":28,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":1735,"infectionDiff":1427,"infectionDiffY":3.90959,"timeCat":"4","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"042_030","label":"SNPs","pAvg":0.90357,"pSD":0.28959,"pScaled":0.63181,"pRank":1,"nSamples":500,"individualID.1":42,"individualID.2":30,"transmission":false,"snpDist":1,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":-14,"infectionDiff":433,"infectionDiffY":1.1863,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"042_032","label":"SNPs","pAvg":0.0335,"pSD":0.00689,"pScaled":0.02284,"pRank":5,"nSamples":50,"individualID.1":42,"individualID.2":32,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":1416,"infectionDiff":379,"infectionDiffY":1.03836,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"042_033","label":"SNPs","pAvg":0.00507,"pSD":0.00129,"pScaled":0.00231,"pRank":34,"nSamples":50,"individualID.1":42,"individualID.2":33,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":1963,"infectionDiff":2284,"infectionDiffY":6.25753,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"042_035","label":"SNPs","pAvg":0.70892,"pSD":0.44664,"pScaled":0.18432,"pRank":1,"nSamples":167,"individualID.1":42,"individualID.2":35,"transmission":false,"snpDist":2,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":1925,"infectionDiff":1081,"infectionDiffY":2.96164,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"042_036","label":"SNPs","pAvg":0.7676,"pSD":0.41931,"pScaled":0.20761,"pRank":1,"nSamples":212,"individualID.1":42,"individualID.2":36,"transmission":false,"snpDist":2,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":1724,"infectionDiff":1892,"infectionDiffY":5.18356,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1","snpClose":true} {"pairID":"042_037","label":"SNPs","pAvg":0.02298,"pSD":0.00701,"pScaled":0.02318,"pRank":16,"nSamples":500,"individualID.1":42,"individualID.2":37,"transmission":false,"snpDist":4,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":2112,"infectionDiff":1414,"infectionDiffY":3.87397,"timeCat":"4","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"042_038","label":"SNPs","pAvg":0.02929,"pSD":0.00841,"pScaled":0.03478,"pRank":10,"nSamples":500,"individualID.1":42,"individualID.2":38,"transmission":false,"snpDist":5,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":1173,"infectionDiff":1059,"infectionDiffY":2.90137,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"042_039","label":"SNPs","pAvg":0.03975,"pSD":0.00869,"pScaled":0.08575,"pRank":3,"nSamples":500,"individualID.1":42,"individualID.2":39,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":1339,"infectionDiff":504,"infectionDiffY":1.38082,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"042_040","label":"SNPs","pAvg":0.01699,"pSD":0.004,"pScaled":0.01519,"pRank":20,"nSamples":500,"individualID.1":42,"individualID.2":40,"transmission":false,"snpDist":3,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":1747,"infectionDiff":2148,"infectionDiffY":5.88493,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"042_041","label":"SNPs","pAvg":0.05833,"pSD":0.0121,"pScaled":0.15143,"pRank":1,"nSamples":500,"individualID.1":42,"individualID.2":41,"transmission":false,"snpDist":4,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":2597,"infectionDiff":348,"infectionDiffY":0.95342,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"042_043","label":"SNPs","pAvg":0.03104,"pSD":0.00806,"pScaled":0.04189,"pRank":10,"nSamples":500,"individualID.1":42,"individualID.2":43,"transmission":false,"snpDist":10,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":2722,"infectionDiff":767,"infectionDiffY":2.10137,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"042_044","label":"SNPs","pAvg":0.04121,"pSD":0.0079,"pScaled":0.01109,"pRank":9,"nSamples":50,"individualID.1":42,"individualID.2":44,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":342,"infectionDiff":668,"infectionDiffY":1.83014,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"042_045","label":"SNPs","pAvg":0.00575,"pSD":0.00275,"pScaled":0.00348,"pRank":36,"nSamples":50,"individualID.1":42,"individualID.2":45,"transmission":false,"snpDist":10,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":2120,"infectionDiff":1659,"infectionDiffY":4.54521,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"042_046","label":"SNPs","pAvg":0.04579,"pSD":0.01291,"pScaled":0.02649,"pRank":8,"nSamples":50,"individualID.1":42,"individualID.2":46,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":1025,"infectionDiff":613,"infectionDiffY":1.67945,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"042_047","label":"SNPs","pAvg":0.01769,"pSD":0.00545,"pScaled":0.00382,"pRank":25,"nSamples":50,"individualID.1":42,"individualID.2":47,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":971,"infectionDiff":1344,"infectionDiffY":3.68219,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"042_048","label":"SNPs","pAvg":0.01525,"pSD":0.00408,"pScaled":0.00672,"pRank":16,"nSamples":50,"individualID.1":42,"individualID.2":48,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":1254,"infectionDiff":878,"infectionDiffY":2.40548,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"042_049","label":"SNPs","pAvg":0.07133,"pSD":0.01916,"pScaled":0.04672,"pRank":2,"nSamples":50,"individualID.1":42,"individualID.2":49,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":989,"infectionDiff":497,"infectionDiffY":1.36164,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"042_050","label":"SNPs","pAvg":0.02681,"pSD":0.00545,"pScaled":0.11706,"pRank":2,"nSamples":500,"individualID.1":42,"individualID.2":50,"transmission":false,"snpDist":3,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1991-08-01 18:24:10","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1994-09-20 16:37:30","sampleDiff":844,"infectionDiff":169,"infectionDiffY":0.46301,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"042_051","label":"SNPs","pAvg":0.01964,"pSD":0.00501,"pScaled":0.0093,"pRank":22,"nSamples":50,"individualID.1":42,"individualID.2":51,"transmission":false,"snpDist":3,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":758,"infectionDiff":1136,"infectionDiffY":3.11233,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"042_052","label":"SNPs","pAvg":0.00887,"pSD":0.002,"pScaled":0.00333,"pRank":36,"nSamples":50,"individualID.1":42,"individualID.2":52,"transmission":false,"snpDist":4,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":2591,"infectionDiff":2164,"infectionDiffY":5.92877,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"042_053","label":"SNPs","pAvg":0.01001,"pSD":0.00447,"pScaled":0.00668,"pRank":18,"nSamples":50,"individualID.1":42,"individualID.2":53,"transmission":false,"snpDist":4,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":1278,"infectionDiff":1628,"infectionDiffY":4.46027,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"042_054","label":"SNPs","pAvg":0.00543,"pSD":0.00143,"pScaled":0.00141,"pRank":36,"nSamples":50,"individualID.1":42,"individualID.2":54,"transmission":false,"snpDist":4,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":2450,"infectionDiff":2553,"infectionDiffY":6.99452,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"042_055","label":"SNPs","pAvg":0.00851,"pSD":0.0037,"pScaled":0.00261,"pRank":24,"nSamples":50,"individualID.1":42,"individualID.2":55,"transmission":false,"snpDist":4,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":1433,"infectionDiff":1820,"infectionDiffY":4.9863,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"042_056","label":"SNPs","pAvg":0.00865,"pSD":0.00152,"pScaled":0.00207,"pRank":25,"nSamples":50,"individualID.1":42,"individualID.2":56,"transmission":false,"snpDist":4,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":1857,"infectionDiff":1905,"infectionDiffY":5.21918,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"042_057","label":"SNPs","pAvg":0.00911,"pSD":0.00171,"pScaled":0.00182,"pRank":28,"nSamples":50,"individualID.1":42,"individualID.2":57,"transmission":false,"snpDist":5,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":2420,"infectionDiff":2555,"infectionDiffY":7,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"042_058","label":"SNPs","pAvg":0.0087,"pSD":0.00172,"pScaled":0.00858,"pRank":33,"nSamples":500,"individualID.1":42,"individualID.2":58,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":2705,"infectionDiff":2243,"infectionDiffY":6.14521,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"042_059","label":"SNPs","pAvg":0.03674,"pSD":0.00722,"pScaled":0.05281,"pRank":4,"nSamples":500,"individualID.1":42,"individualID.2":59,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":2084,"infectionDiff":707,"infectionDiffY":1.93699,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"042_060","label":"SNPs","pAvg":0.01671,"pSD":0.00334,"pScaled":0.0081,"pRank":20,"nSamples":50,"individualID.1":42,"individualID.2":60,"transmission":false,"snpDist":4,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":2746,"infectionDiff":2885,"infectionDiffY":7.90411,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"042_061","label":"SNPs","pAvg":0.00162,"pSD":0.00047,"pScaled":0.00308,"pRank":41,"nSamples":500,"individualID.1":42,"individualID.2":61,"transmission":false,"snpDist":3,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":2539,"infectionDiff":2103,"infectionDiffY":5.76164,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"042_062","label":"SNPs","pAvg":0.02613,"pSD":0.00712,"pScaled":0.00692,"pRank":16,"nSamples":50,"individualID.1":42,"individualID.2":62,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":1274,"infectionDiff":1007,"infectionDiffY":2.7589,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"042_063","label":"SNPs","pAvg":0.02839,"pSD":0.00829,"pScaled":0.01366,"pRank":6,"nSamples":50,"individualID.1":42,"individualID.2":63,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":706,"infectionDiff":802,"infectionDiffY":2.19726,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"042_064","label":"SNPs","pAvg":0.00545,"pSD":0.00246,"pScaled":0.00207,"pRank":26,"nSamples":50,"individualID.1":42,"individualID.2":64,"transmission":false,"snpDist":5,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":1489,"infectionDiff":1784,"infectionDiffY":4.88767,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"042_065","label":"SNPs","pAvg":0.00312,"pSD":0.00156,"pScaled":0.0024,"pRank":28,"nSamples":50,"individualID.1":42,"individualID.2":65,"transmission":false,"snpDist":4,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":1497,"infectionDiff":1717,"infectionDiffY":4.70411,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"042_066","label":"SNPs","pAvg":0.0184,"pSD":0.00482,"pScaled":0.00486,"pRank":15,"nSamples":50,"individualID.1":42,"individualID.2":66,"transmission":false,"snpDist":5,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":1644,"infectionDiff":1864,"infectionDiffY":5.10685,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"042_067","label":"SNPs","pAvg":0.0088,"pSD":0.00155,"pScaled":0.00222,"pRank":47,"nSamples":50,"individualID.1":42,"individualID.2":67,"transmission":false,"snpDist":6,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":2765,"infectionDiff":2949,"infectionDiffY":8.07945,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"042_068","label":"SNPs","pAvg":0.47783,"pSD":0.498,"pScaled":0.10439,"pRank":5,"nSamples":95,"individualID.1":42,"individualID.2":68,"transmission":false,"snpDist":1,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":2372,"infectionDiff":2601,"infectionDiffY":7.12603,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1","snpClose":true} {"pairID":"042_069","label":"SNPs","pAvg":0.75411,"pSD":0.43119,"pScaled":0.24177,"pRank":2,"nSamples":203,"individualID.1":42,"individualID.2":69,"transmission":false,"snpDist":2,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":2416,"infectionDiff":2628,"infectionDiffY":7.2,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":true} {"pairID":"042_070","label":"SNPs","pAvg":0.04813,"pSD":0.01349,"pScaled":0.0149,"pRank":7,"nSamples":50,"individualID.1":42,"individualID.2":70,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":953,"infectionDiff":1045,"infectionDiffY":2.86301,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"042_071","label":"SNPs","pAvg":0.00303,"pSD":0.0094,"pScaled":0.00308,"pRank":34,"nSamples":500,"individualID.1":42,"individualID.2":71,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":2471,"infectionDiff":1304,"infectionDiffY":3.5726,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"042_072","label":"SNPs","pAvg":0.01099,"pSD":0.00394,"pScaled":0.00334,"pRank":17,"nSamples":50,"individualID.1":42,"individualID.2":72,"transmission":false,"snpDist":9,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":912,"infectionDiff":1223,"infectionDiffY":3.35068,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"042_073","label":"SNPs","pAvg":0.00393,"pSD":0.00119,"pScaled":0.00289,"pRank":25,"nSamples":50,"individualID.1":42,"individualID.2":73,"transmission":false,"snpDist":5,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":1993,"infectionDiff":1974,"infectionDiffY":5.40822,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"042_074","label":"SNPs","pAvg":0.00333,"pSD":0.00124,"pScaled":0.00183,"pRank":23,"nSamples":50,"individualID.1":42,"individualID.2":74,"transmission":false,"snpDist":4,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":1833,"infectionDiff":1354,"infectionDiffY":3.70959,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"042_075","label":"SNPs","pAvg":0.00362,"pSD":0.00098,"pScaled":0.01571,"pRank":17,"nSamples":500,"individualID.1":42,"individualID.2":75,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":2500,"infectionDiff":2928,"infectionDiffY":8.02192,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"042_076","label":"SNPs","pAvg":0.73105,"pSD":0.44312,"pScaled":0.17918,"pRank":1,"nSamples":185,"individualID.1":42,"individualID.2":76,"transmission":false,"snpDist":1,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":2734,"infectionDiff":2601,"infectionDiffY":7.12603,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"042_077","label":"SNPs","pAvg":0.59183,"pSD":0.49182,"pScaled":0.13095,"pRank":3,"nSamples":122,"individualID.1":42,"individualID.2":77,"transmission":false,"snpDist":0,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":1887,"infectionDiff":2316,"infectionDiffY":6.34521,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"042_078","label":"SNPs","pAvg":0.64893,"pSD":0.4727,"pScaled":0.14369,"pRank":3,"nSamples":140,"individualID.1":42,"individualID.2":78,"transmission":false,"snpDist":0,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":2578,"infectionDiff":2629,"infectionDiffY":7.20274,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"042_079","label":"SNPs","pAvg":0.00045,"pSD":0.0014,"pScaled":0.00023,"pRank":57,"nSamples":500,"individualID.1":42,"individualID.2":79,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":1987,"infectionDiff":1913,"infectionDiffY":5.2411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"042_080","label":"SNPs","pAvg":0.00173,"pSD":0.00051,"pScaled":0.01267,"pRank":20,"nSamples":500,"individualID.1":42,"individualID.2":80,"transmission":false,"snpDist":7,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":1995,"infectionDiff":1845,"infectionDiffY":5.05479,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"042_081","label":"SNPs","pAvg":0.64422,"pSD":0.47904,"pScaled":0.16043,"pRank":3,"nSamples":140,"individualID.1":42,"individualID.2":81,"transmission":false,"snpDist":0,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":2711,"infectionDiff":3012,"infectionDiffY":8.25205,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"3","snpClose":true} {"pairID":"042_082","label":"SNPs","pAvg":0.64555,"pSD":0.47725,"pScaled":0.14054,"pRank":2,"nSamples":140,"individualID.1":42,"individualID.2":82,"transmission":false,"snpDist":2,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":2715,"infectionDiff":3089,"infectionDiffY":8.46301,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"042_083","label":"SNPs","pAvg":0.845,"pSD":0.36075,"pScaled":0.32877,"pRank":1,"nSamples":320,"individualID.1":42,"individualID.2":83,"transmission":false,"snpDist":2,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":2491,"infectionDiff":2559,"infectionDiffY":7.01096,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1","snpClose":true} {"pairID":"042_084","label":"SNPs","pAvg":0.00047,"pSD":0.00146,"pScaled":0.00024,"pRank":58,"nSamples":500,"individualID.1":42,"individualID.2":84,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":2734,"infectionDiff":2607,"infectionDiffY":7.14247,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"042_085","label":"SNPs","pAvg":0.00053,"pSD":0.00163,"pScaled":0.00018,"pRank":55,"nSamples":500,"individualID.1":42,"individualID.2":85,"transmission":false,"snpDist":11,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":1846,"infectionDiff":2272,"infectionDiffY":6.22466,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"042_086","label":"SNPs","pAvg":0.0017,"pSD":0.00047,"pScaled":0.00054,"pRank":38,"nSamples":50,"individualID.1":42,"individualID.2":86,"transmission":false,"snpDist":4,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":1684,"infectionDiff":1900,"infectionDiffY":5.20548,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"042_087","label":"SNPs","pAvg":0.002,"pSD":0.0006,"pScaled":0.00163,"pRank":31,"nSamples":50,"individualID.1":42,"individualID.2":87,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":2219,"infectionDiff":2439,"infectionDiffY":6.68219,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"042_088","label":"SNPs","pAvg":0.5614,"pSD":0.49452,"pScaled":0.10864,"pRank":4,"nSamples":113,"individualID.1":42,"individualID.2":88,"transmission":false,"snpDist":1,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":2329,"infectionDiff":2774,"infectionDiffY":7.6,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"042_089","label":"SNPs","pAvg":0.00055,"pSD":0.00171,"pScaled":0.00018,"pRank":60,"nSamples":500,"individualID.1":42,"individualID.2":89,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":2620,"infectionDiff":2610,"infectionDiffY":7.15068,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"042_090","label":"SNPs","pAvg":0.00053,"pSD":0.00165,"pScaled":0.00014,"pRank":76,"nSamples":500,"individualID.1":42,"individualID.2":90,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":2691,"infectionDiff":2837,"infectionDiffY":7.7726,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"042_091","label":"SNPs","pAvg":0.00092,"pSD":0.00287,"pScaled":0.00046,"pRank":49,"nSamples":500,"individualID.1":42,"individualID.2":91,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":2712,"infectionDiff":2428,"infectionDiffY":6.65205,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"042_092","label":"SNPs","pAvg":0.00046,"pSD":0.00141,"pScaled":0.00018,"pRank":62,"nSamples":500,"individualID.1":42,"individualID.2":92,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":2759,"infectionDiff":2579,"infectionDiffY":7.06575,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"042_093","label":"SNPs","pAvg":0.00059,"pSD":0.00183,"pScaled":0.00016,"pRank":68,"nSamples":500,"individualID.1":42,"individualID.2":93,"transmission":false,"snpDist":13,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":2596,"infectionDiff":2805,"infectionDiffY":7.68493,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"042_094","label":"SNPs","pAvg":0.00365,"pSD":0.00093,"pScaled":0.0012,"pRank":46,"nSamples":50,"individualID.1":42,"individualID.2":94,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":2642,"infectionDiff":3076,"infectionDiffY":8.4274,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"042_095","label":"SNPs","pAvg":0.00199,"pSD":0.00055,"pScaled":0.00101,"pRank":32,"nSamples":50,"individualID.1":42,"individualID.2":95,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":2224,"infectionDiff":2508,"infectionDiffY":6.87123,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"042_096","label":"SNPs","pAvg":0.00178,"pSD":0.00045,"pScaled":0.00063,"pRank":51,"nSamples":50,"individualID.1":42,"individualID.2":96,"transmission":false,"snpDist":8,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":2319,"infectionDiff":2740,"infectionDiffY":7.50685,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"042_097","label":"SNPs","pAvg":0.00095,"pSD":0.00297,"pScaled":0.00021,"pRank":78,"nSamples":500,"individualID.1":42,"individualID.2":97,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":2562,"infectionDiff":2896,"infectionDiffY":7.93425,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"042_098","label":"SNPs","pAvg":0.00107,"pSD":0.00333,"pScaled":0.0003,"pRank":54,"nSamples":500,"individualID.1":42,"individualID.2":98,"transmission":false,"snpDist":12,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":2381,"infectionDiff":2669,"infectionDiffY":7.31233,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"042_099","label":"SNPs","pAvg":0.00302,"pSD":0.00084,"pScaled":0.00103,"pRank":38,"nSamples":50,"individualID.1":42,"individualID.2":99,"transmission":false,"snpDist":5,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":2364,"infectionDiff":2533,"infectionDiffY":6.93973,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"042_100","label":"SNPs","pAvg":0.00467,"pSD":0.00098,"pScaled":0.00138,"pRank":63,"nSamples":50,"individualID.1":42,"individualID.2":100,"transmission":false,"snpDist":5,"infectionDate.1":"1991-02-13 20:50:44","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1992-05-29 17:55:20","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":2563,"infectionDiff":2911,"infectionDiffY":7.97534,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"043_009","label":"SNPs","pAvg":0.00393,"pSD":0.0123,"pScaled":0.01752,"pRank":18,"nSamples":500,"individualID.1":43,"individualID.2":9,"transmission":false,"snpDist":16,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":-137,"infectionDiff":410,"infectionDiffY":1.12329,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"043_018","label":"SNPs","pAvg":0.08177,"pSD":0.01979,"pScaled":0.09269,"pRank":1,"nSamples":500,"individualID.1":43,"individualID.2":18,"transmission":false,"snpDist":9,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":-2213,"infectionDiff":184,"infectionDiffY":0.50411,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"043_021","label":"SNPs","pAvg":0.03841,"pSD":0.01042,"pScaled":0.03667,"pRank":14,"nSamples":500,"individualID.1":43,"individualID.2":21,"transmission":false,"snpDist":10,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":-768,"infectionDiff":181,"infectionDiffY":0.49589,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"043_023","label":"SNPs","pAvg":0.00105,"pSD":0.0033,"pScaled":0.00047,"pRank":80,"nSamples":500,"individualID.1":43,"individualID.2":23,"transmission":false,"snpDist":12,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":20,"infectionDiff":1949,"infectionDiffY":5.33973,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"043_026","label":"SNPs","pAvg":0.00083,"pSD":0.00261,"pScaled":0.00029,"pRank":62,"nSamples":500,"individualID.1":43,"individualID.2":26,"transmission":false,"snpDist":11,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":-376,"infectionDiff":1246,"infectionDiffY":3.4137,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"043_027","label":"SNPs","pAvg":0.00685,"pSD":0.00214,"pScaled":0.00245,"pRank":60,"nSamples":50,"individualID.1":43,"individualID.2":27,"transmission":false,"snpDist":10,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":-203,"infectionDiff":1835,"infectionDiffY":5.0274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"043_028","label":"SNPs","pAvg":0.05209,"pSD":0.01429,"pScaled":0.01455,"pRank":11,"nSamples":50,"individualID.1":43,"individualID.2":28,"transmission":false,"snpDist":10,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":-986,"infectionDiff":660,"infectionDiffY":1.80822,"timeCat":"2","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"043_033","label":"SNPs","pAvg":0.00363,"pSD":0.00183,"pScaled":0.00165,"pRank":51,"nSamples":50,"individualID.1":43,"individualID.2":33,"transmission":false,"snpDist":5,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":-759,"infectionDiff":1517,"infectionDiffY":4.15616,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"043_035","label":"SNPs","pAvg":0.08308,"pSD":0.02203,"pScaled":0.0216,"pRank":6,"nSamples":50,"individualID.1":43,"individualID.2":35,"transmission":false,"snpDist":10,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":-796,"infectionDiff":314,"infectionDiffY":0.86027,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"043_036","label":"SNPs","pAvg":0.02167,"pSD":0.00869,"pScaled":0.00586,"pRank":29,"nSamples":50,"individualID.1":43,"individualID.2":36,"transmission":false,"snpDist":10,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":-997,"infectionDiff":1125,"infectionDiffY":3.08219,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"043_037","label":"SNPs","pAvg":0.00311,"pSD":0.00968,"pScaled":0.00314,"pRank":43,"nSamples":500,"individualID.1":43,"individualID.2":37,"transmission":false,"snpDist":14,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":-610,"infectionDiff":647,"infectionDiffY":1.7726,"timeCat":"2","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"043_038","label":"SNPs","pAvg":0.0023,"pSD":0.00718,"pScaled":0.00273,"pRank":36,"nSamples":500,"individualID.1":43,"individualID.2":38,"transmission":false,"snpDist":14,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":-1548,"infectionDiff":292,"infectionDiffY":0.8,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"043_040","label":"SNPs","pAvg":0.00161,"pSD":0.00513,"pScaled":0.00144,"pRank":62,"nSamples":500,"individualID.1":43,"individualID.2":40,"transmission":false,"snpDist":13,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":-975,"infectionDiff":1381,"infectionDiffY":3.78356,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"043_045","label":"SNPs","pAvg":0.04171,"pSD":0.01299,"pScaled":0.02525,"pRank":6,"nSamples":50,"individualID.1":43,"individualID.2":45,"transmission":false,"snpDist":6,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":-601,"infectionDiff":892,"infectionDiffY":2.44384,"timeCat":"3","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"043_047","label":"SNPs","pAvg":0.0807,"pSD":0.0232,"pScaled":0.01741,"pRank":9,"nSamples":50,"individualID.1":43,"individualID.2":47,"transmission":false,"snpDist":4,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":-1750,"infectionDiff":577,"infectionDiffY":1.58082,"timeCat":"2","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"043_048","label":"SNPs","pAvg":0.06529,"pSD":0.0155,"pScaled":0.02878,"pRank":3,"nSamples":50,"individualID.1":43,"individualID.2":48,"transmission":false,"snpDist":5,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":-1467,"infectionDiff":111,"infectionDiffY":0.30411,"timeCat":"1","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"043_051","label":"SNPs","pAvg":0.00956,"pSD":0.02984,"pScaled":0.00453,"pRank":35,"nSamples":500,"individualID.1":43,"individualID.2":51,"transmission":false,"snpDist":11,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-1964,"infectionDiff":369,"infectionDiffY":1.01096,"timeCat":"2","Z1":"1","Z2":"1","Z3":"2","Z4":"1","snpClose":false} {"pairID":"043_052","label":"SNPs","pAvg":0.00085,"pSD":0.00278,"pScaled":0.00032,"pRank":63,"nSamples":500,"individualID.1":43,"individualID.2":52,"transmission":false,"snpDist":12,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":-131,"infectionDiff":1397,"infectionDiffY":3.8274,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"043_053","label":"SNPs","pAvg":0.00144,"pSD":0.00451,"pScaled":0.00096,"pRank":44,"nSamples":500,"individualID.1":43,"individualID.2":53,"transmission":false,"snpDist":14,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":-1443,"infectionDiff":861,"infectionDiffY":2.3589,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"043_054","label":"SNPs","pAvg":0.00044,"pSD":0.00146,"pScaled":0.00011,"pRank":71,"nSamples":500,"individualID.1":43,"individualID.2":54,"transmission":false,"snpDist":14,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":-272,"infectionDiff":1786,"infectionDiffY":4.89315,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"043_055","label":"SNPs","pAvg":0.00476,"pSD":0.01484,"pScaled":0.00146,"pRank":35,"nSamples":500,"individualID.1":43,"individualID.2":55,"transmission":false,"snpDist":14,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":-1289,"infectionDiff":1053,"infectionDiffY":2.88493,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"043_056","label":"SNPs","pAvg":0.00083,"pSD":0.00267,"pScaled":0.0002,"pRank":54,"nSamples":500,"individualID.1":43,"individualID.2":56,"transmission":false,"snpDist":14,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":-865,"infectionDiff":1138,"infectionDiffY":3.11781,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"043_057","label":"SNPs","pAvg":0.00037,"pSD":0.00125,"pScaled":0.00007,"pRank":73,"nSamples":500,"individualID.1":43,"individualID.2":57,"transmission":false,"snpDist":15,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":-302,"infectionDiff":1788,"infectionDiffY":4.89863,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"043_058","label":"SNPs","pAvg":0.00037,"pSD":0.00124,"pScaled":0.00037,"pRank":66,"nSamples":500,"individualID.1":43,"individualID.2":58,"transmission":false,"snpDist":15,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":-17,"infectionDiff":1476,"infectionDiffY":4.04384,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"043_060","label":"SNPs","pAvg":0.00076,"pSD":0.00238,"pScaled":0.00037,"pRank":80,"nSamples":500,"individualID.1":43,"individualID.2":60,"transmission":false,"snpDist":14,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":24,"infectionDiff":2118,"infectionDiffY":5.80274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"043_061","label":"SNPs","pAvg":0.00031,"pSD":0.00103,"pScaled":0.00059,"pRank":61,"nSamples":500,"individualID.1":43,"individualID.2":61,"transmission":false,"snpDist":13,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":-183,"infectionDiff":1336,"infectionDiffY":3.66027,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"043_062","label":"SNPs","pAvg":0.10188,"pSD":0.02324,"pScaled":0.02697,"pRank":5,"nSamples":50,"individualID.1":43,"individualID.2":62,"transmission":true,"snpDist":4,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":-1448,"infectionDiff":240,"infectionDiffY":0.65753,"timeCat":"1","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"043_063","label":"SNPs","pAvg":0.02256,"pSD":0.00663,"pScaled":0.01085,"pRank":10,"nSamples":50,"individualID.1":43,"individualID.2":63,"transmission":false,"snpDist":5,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":-2016,"infectionDiff":35,"infectionDiffY":0.09589,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"043_064","label":"SNPs","pAvg":0.00226,"pSD":0.00714,"pScaled":0.00086,"pRank":37,"nSamples":500,"individualID.1":43,"individualID.2":64,"transmission":false,"snpDist":15,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":-1233,"infectionDiff":1017,"infectionDiffY":2.7863,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"043_065","label":"SNPs","pAvg":0.00048,"pSD":0.00154,"pScaled":0.00037,"pRank":50,"nSamples":500,"individualID.1":43,"individualID.2":65,"transmission":false,"snpDist":14,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":-1225,"infectionDiff":950,"infectionDiffY":2.60274,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"043_066","label":"SNPs","pAvg":0.00245,"pSD":0.00774,"pScaled":0.00065,"pRank":46,"nSamples":500,"individualID.1":43,"individualID.2":66,"transmission":false,"snpDist":15,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":-1078,"infectionDiff":1097,"infectionDiffY":3.00548,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"043_067","label":"SNPs","pAvg":0.00042,"pSD":0.00134,"pScaled":0.00011,"pRank":91,"nSamples":500,"individualID.1":43,"individualID.2":67,"transmission":false,"snpDist":16,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":44,"infectionDiff":2182,"infectionDiffY":5.97808,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"043_068","label":"SNPs","pAvg":0.00098,"pSD":0.0031,"pScaled":0.00021,"pRank":78,"nSamples":500,"individualID.1":43,"individualID.2":68,"transmission":false,"snpDist":11,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":-350,"infectionDiff":1834,"infectionDiffY":5.02466,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"043_069","label":"SNPs","pAvg":0.00015,"pSD":0.00047,"pScaled":0.00005,"pRank":84,"nSamples":500,"individualID.1":43,"individualID.2":69,"transmission":false,"snpDist":12,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":-306,"infectionDiff":1861,"infectionDiffY":5.09863,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"043_070","label":"SNPs","pAvg":0.03792,"pSD":0.0106,"pScaled":0.01174,"pRank":15,"nSamples":50,"individualID.1":43,"individualID.2":70,"transmission":false,"snpDist":5,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":-1769,"infectionDiff":278,"infectionDiffY":0.76164,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"043_071","label":"SNPs","pAvg":0.02961,"pSD":0.00726,"pScaled":0.03013,"pRank":13,"nSamples":500,"individualID.1":43,"individualID.2":71,"transmission":false,"snpDist":9,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":-250,"infectionDiff":537,"infectionDiffY":1.47123,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"043_072","label":"SNPs","pAvg":0.03957,"pSD":0.01166,"pScaled":0.01204,"pRank":9,"nSamples":50,"individualID.1":43,"individualID.2":72,"transmission":false,"snpDist":5,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":-1810,"infectionDiff":456,"infectionDiffY":1.24932,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"043_073","label":"SNPs","pAvg":0.00046,"pSD":0.00148,"pScaled":0.00034,"pRank":56,"nSamples":500,"individualID.1":43,"individualID.2":73,"transmission":false,"snpDist":13,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":-729,"infectionDiff":1207,"infectionDiffY":3.30685,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"043_074","label":"SNPs","pAvg":0.0006,"pSD":0.00188,"pScaled":0.00033,"pRank":47,"nSamples":500,"individualID.1":43,"individualID.2":74,"transmission":false,"snpDist":12,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":-888,"infectionDiff":587,"infectionDiffY":1.60822,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"043_075","label":"SNPs","pAvg":0.00016,"pSD":0.00051,"pScaled":0.00071,"pRank":82,"nSamples":500,"individualID.1":43,"individualID.2":75,"transmission":false,"snpDist":18,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-222,"infectionDiff":2161,"infectionDiffY":5.92055,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"043_076","label":"SNPs","pAvg":0.00085,"pSD":0.00267,"pScaled":0.00021,"pRank":77,"nSamples":500,"individualID.1":43,"individualID.2":76,"transmission":false,"snpDist":11,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":13,"infectionDiff":1834,"infectionDiffY":5.02466,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"043_077","label":"SNPs","pAvg":0.0038,"pSD":0.00182,"pScaled":0.00084,"pRank":61,"nSamples":50,"individualID.1":43,"individualID.2":77,"transmission":false,"snpDist":10,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":-834,"infectionDiff":1549,"infectionDiffY":4.24384,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"043_078","label":"SNPs","pAvg":0.00739,"pSD":0.00198,"pScaled":0.00164,"pRank":65,"nSamples":50,"individualID.1":43,"individualID.2":78,"transmission":false,"snpDist":10,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":-144,"infectionDiff":1862,"infectionDiffY":5.10137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"043_079","label":"SNPs","pAvg":0.0083,"pSD":0.00367,"pScaled":0.00417,"pRank":17,"nSamples":50,"individualID.1":43,"individualID.2":79,"transmission":false,"snpDist":7,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":-735,"infectionDiff":1146,"infectionDiffY":3.13973,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"043_080","label":"SNPs","pAvg":0.00073,"pSD":0.00234,"pScaled":0.00531,"pRank":37,"nSamples":500,"individualID.1":43,"individualID.2":80,"transmission":false,"snpDist":15,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":-726,"infectionDiff":1078,"infectionDiffY":2.95342,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"043_081","label":"SNPs","pAvg":0.00236,"pSD":0.0007,"pScaled":0.00059,"pRank":68,"nSamples":50,"individualID.1":43,"individualID.2":81,"transmission":false,"snpDist":10,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":-10,"infectionDiff":2245,"infectionDiffY":6.15068,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"043_082","label":"SNPs","pAvg":0.00063,"pSD":0.002,"pScaled":0.00014,"pRank":94,"nSamples":500,"individualID.1":43,"individualID.2":82,"transmission":false,"snpDist":12,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":-6,"infectionDiff":2322,"infectionDiffY":6.36164,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"043_083","label":"SNPs","pAvg":0.00104,"pSD":0.00352,"pScaled":0.0004,"pRank":74,"nSamples":500,"individualID.1":43,"individualID.2":83,"transmission":false,"snpDist":12,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":-231,"infectionDiff":1792,"infectionDiffY":4.90959,"timeCat":"5","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"043_084","label":"SNPs","pAvg":0.00409,"pSD":0.00126,"pScaled":0.00207,"pRank":20,"nSamples":50,"individualID.1":43,"individualID.2":84,"transmission":false,"snpDist":9,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":13,"infectionDiff":1840,"infectionDiffY":5.0411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"043_085","label":"SNPs","pAvg":0.00435,"pSD":0.0021,"pScaled":0.00149,"pRank":20,"nSamples":50,"individualID.1":43,"individualID.2":85,"transmission":false,"snpDist":7,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":-876,"infectionDiff":1505,"infectionDiffY":4.12329,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"043_086","label":"SNPs","pAvg":0.00033,"pSD":0.00107,"pScaled":0.0001,"pRank":58,"nSamples":500,"individualID.1":43,"individualID.2":86,"transmission":false,"snpDist":12,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":-1038,"infectionDiff":1133,"infectionDiffY":3.10411,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"043_087","label":"SNPs","pAvg":0.0002,"pSD":0.00067,"pScaled":0.00016,"pRank":67,"nSamples":500,"individualID.1":43,"individualID.2":87,"transmission":false,"snpDist":16,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":-503,"infectionDiff":1672,"infectionDiffY":4.58082,"timeCat":"5","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"043_088","label":"SNPs","pAvg":0.00074,"pSD":0.00234,"pScaled":0.00014,"pRank":87,"nSamples":500,"individualID.1":43,"individualID.2":88,"transmission":false,"snpDist":11,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-393,"infectionDiff":2007,"infectionDiffY":5.49863,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"043_089","label":"SNPs","pAvg":0.00478,"pSD":0.00124,"pScaled":0.00153,"pRank":17,"nSamples":50,"individualID.1":43,"individualID.2":89,"transmission":false,"snpDist":8,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":-101,"infectionDiff":1843,"infectionDiffY":5.04932,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"043_090","label":"SNPs","pAvg":0.0047,"pSD":0.00117,"pScaled":0.00122,"pRank":32,"nSamples":50,"individualID.1":43,"individualID.2":90,"transmission":false,"snpDist":9,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":-31,"infectionDiff":2070,"infectionDiffY":5.67123,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"043_091","label":"SNPs","pAvg":0.00799,"pSD":0.00383,"pScaled":0.00401,"pRank":16,"nSamples":50,"individualID.1":43,"individualID.2":91,"transmission":false,"snpDist":8,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":-10,"infectionDiff":1661,"infectionDiffY":4.55068,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"043_092","label":"SNPs","pAvg":0.00395,"pSD":0.00175,"pScaled":0.0016,"pRank":20,"nSamples":50,"individualID.1":43,"individualID.2":92,"transmission":false,"snpDist":8,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":37,"infectionDiff":1812,"infectionDiffY":4.96438,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"043_093","label":"SNPs","pAvg":0.00755,"pSD":0.0021,"pScaled":0.00205,"pRank":13,"nSamples":50,"individualID.1":43,"individualID.2":93,"transmission":false,"snpDist":9,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":-126,"infectionDiff":2038,"infectionDiffY":5.58356,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"043_094","label":"SNPs","pAvg":0.00014,"pSD":0.00045,"pScaled":0.00005,"pRank":97,"nSamples":500,"individualID.1":43,"individualID.2":94,"transmission":false,"snpDist":16,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":-80,"infectionDiff":2309,"infectionDiffY":6.32603,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"043_095","label":"SNPs","pAvg":0.00021,"pSD":0.00073,"pScaled":0.00011,"pRank":68,"nSamples":500,"individualID.1":43,"individualID.2":95,"transmission":false,"snpDist":16,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":-497,"infectionDiff":1741,"infectionDiffY":4.76986,"timeCat":"5","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"043_096","label":"SNPs","pAvg":0.00015,"pSD":0.00046,"pScaled":0.00005,"pRank":88,"nSamples":500,"individualID.1":43,"individualID.2":96,"transmission":false,"snpDist":16,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-403,"infectionDiff":1973,"infectionDiffY":5.40548,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"043_097","label":"SNPs","pAvg":0.00805,"pSD":0.00217,"pScaled":0.0018,"pRank":34,"nSamples":50,"individualID.1":43,"individualID.2":97,"transmission":false,"snpDist":8,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":-160,"infectionDiff":2129,"infectionDiffY":5.83288,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"043_098","label":"SNPs","pAvg":0.00455,"pSD":0.00134,"pScaled":0.00129,"pRank":21,"nSamples":50,"individualID.1":43,"individualID.2":98,"transmission":false,"snpDist":8,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":-341,"infectionDiff":1902,"infectionDiffY":5.21096,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"043_099","label":"SNPs","pAvg":0.00013,"pSD":0.00043,"pScaled":0.00004,"pRank":74,"nSamples":500,"individualID.1":43,"individualID.2":99,"transmission":false,"snpDist":13,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":-358,"infectionDiff":1766,"infectionDiffY":4.83836,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"043_100","label":"SNPs","pAvg":0.00076,"pSD":0.00236,"pScaled":0.00022,"pRank":88,"nSamples":500,"individualID.1":43,"individualID.2":100,"transmission":false,"snpDist":13,"infectionDate.1":"1993-03-21 20:02:07","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-11-11 11:06:56","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":-159,"infectionDiff":2144,"infectionDiffY":5.87397,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"044_009","label":"SNPs","pAvg":0.00204,"pSD":0.00636,"pScaled":0.0091,"pRank":30,"nSamples":500,"individualID.1":44,"individualID.2":9,"transmission":false,"snpDist":13,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":2243,"infectionDiff":509,"infectionDiffY":1.39452,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"044_014","label":"SNPs","pAvg":0.04086,"pSD":0.01012,"pScaled":0.02244,"pRank":12,"nSamples":50,"individualID.1":44,"individualID.2":14,"transmission":false,"snpDist":6,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":274,"infectionDiff":86,"infectionDiffY":0.23562,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"044_018","label":"SNPs","pAvg":0.0437,"pSD":0.01066,"pScaled":0.04953,"pRank":8,"nSamples":500,"individualID.1":44,"individualID.2":18,"transmission":false,"snpDist":6,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":166,"infectionDiff":283,"infectionDiffY":0.77534,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"044_021","label":"SNPs","pAvg":0.03841,"pSD":0.01042,"pScaled":0.03667,"pRank":14,"nSamples":500,"individualID.1":44,"individualID.2":21,"transmission":false,"snpDist":7,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":1611,"infectionDiff":280,"infectionDiffY":0.76712,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"044_023","label":"SNPs","pAvg":0.01053,"pSD":0.00305,"pScaled":0.00468,"pRank":34,"nSamples":50,"individualID.1":44,"individualID.2":23,"transmission":false,"snpDist":9,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":2400,"infectionDiff":2048,"infectionDiffY":5.61096,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"044_026","label":"SNPs","pAvg":0.00829,"pSD":0.00254,"pScaled":0.00291,"pRank":29,"nSamples":50,"individualID.1":44,"individualID.2":26,"transmission":false,"snpDist":8,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":2004,"infectionDiff":1344,"infectionDiffY":3.68219,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"044_027","label":"SNPs","pAvg":0.00685,"pSD":0.00214,"pScaled":0.00245,"pRank":60,"nSamples":50,"individualID.1":44,"individualID.2":27,"transmission":false,"snpDist":7,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":2177,"infectionDiff":1934,"infectionDiffY":5.29863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"044_028","label":"SNPs","pAvg":0.04053,"pSD":0.01168,"pScaled":0.01132,"pRank":16,"nSamples":50,"individualID.1":44,"individualID.2":28,"transmission":false,"snpDist":7,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":1393,"infectionDiff":758,"infectionDiffY":2.07671,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"044_033","label":"SNPs","pAvg":0.81333,"pSD":0.38871,"pScaled":0.37087,"pRank":2,"nSamples":266,"individualID.1":44,"individualID.2":33,"transmission":false,"snpDist":2,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":1621,"infectionDiff":1616,"infectionDiffY":4.4274,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":true} {"pairID":"044_035","label":"SNPs","pAvg":0.03342,"pSD":0.00836,"pScaled":0.00869,"pRank":16,"nSamples":50,"individualID.1":44,"individualID.2":35,"transmission":false,"snpDist":7,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":1583,"infectionDiff":413,"infectionDiffY":1.13151,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"044_036","label":"SNPs","pAvg":0.02167,"pSD":0.00869,"pScaled":0.00586,"pRank":29,"nSamples":50,"individualID.1":44,"individualID.2":36,"transmission":false,"snpDist":7,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":1382,"infectionDiff":1224,"infectionDiffY":3.35342,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"044_037","label":"SNPs","pAvg":0.00221,"pSD":0.00706,"pScaled":0.00223,"pRank":45,"nSamples":500,"individualID.1":44,"individualID.2":37,"transmission":false,"snpDist":11,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":1769,"infectionDiff":746,"infectionDiffY":2.04384,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"044_038","label":"SNPs","pAvg":0.00182,"pSD":0.00565,"pScaled":0.00216,"pRank":38,"nSamples":500,"individualID.1":44,"individualID.2":38,"transmission":false,"snpDist":12,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":831,"infectionDiff":390,"infectionDiffY":1.06849,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"044_040","label":"SNPs","pAvg":0.00721,"pSD":0.00329,"pScaled":0.00645,"pRank":48,"nSamples":500,"individualID.1":44,"individualID.2":40,"transmission":false,"snpDist":10,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":1405,"infectionDiff":1480,"infectionDiffY":4.05479,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"044_043","label":"SNPs","pAvg":0.06472,"pSD":0.01375,"pScaled":0.08735,"pRank":3,"nSamples":500,"individualID.1":44,"individualID.2":43,"transmission":false,"snpDist":3,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":2380,"infectionDiff":99,"infectionDiffY":0.27123,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"044_045","label":"SNPs","pAvg":0.02248,"pSD":0.00747,"pScaled":0.01361,"pRank":10,"nSamples":50,"individualID.1":44,"individualID.2":45,"transmission":false,"snpDist":3,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":1778,"infectionDiff":990,"infectionDiffY":2.71233,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"044_047","label":"SNPs","pAvg":0.63463,"pSD":0.46689,"pScaled":0.13689,"pRank":3,"nSamples":131,"individualID.1":44,"individualID.2":47,"transmission":false,"snpDist":1,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":629,"infectionDiff":676,"infectionDiffY":1.85205,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":true} {"pairID":"044_048","label":"SNPs","pAvg":0.79788,"pSD":0.39382,"pScaled":0.35175,"pRank":2,"nSamples":239,"individualID.1":44,"individualID.2":48,"transmission":false,"snpDist":2,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":912,"infectionDiff":210,"infectionDiffY":0.57534,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":true} {"pairID":"044_051","label":"SNPs","pAvg":0.05255,"pSD":0.01433,"pScaled":0.02489,"pRank":7,"nSamples":50,"individualID.1":44,"individualID.2":51,"transmission":false,"snpDist":8,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":416,"infectionDiff":468,"infectionDiffY":1.28219,"timeCat":"2","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"044_052","label":"SNPs","pAvg":0.00372,"pSD":0.0019,"pScaled":0.0014,"pRank":52,"nSamples":50,"individualID.1":44,"individualID.2":52,"transmission":false,"snpDist":9,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":2249,"infectionDiff":1496,"infectionDiffY":4.09863,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"044_053","label":"SNPs","pAvg":0.00144,"pSD":0.00451,"pScaled":0.00096,"pRank":44,"nSamples":500,"individualID.1":44,"individualID.2":53,"transmission":false,"snpDist":11,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":936,"infectionDiff":960,"infectionDiffY":2.63014,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"044_054","label":"SNPs","pAvg":0.0009,"pSD":0.00281,"pScaled":0.00023,"pRank":66,"nSamples":500,"individualID.1":44,"individualID.2":54,"transmission":false,"snpDist":11,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":2107,"infectionDiff":1884,"infectionDiffY":5.16164,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"044_055","label":"SNPs","pAvg":0.00166,"pSD":0.00525,"pScaled":0.00051,"pRank":48,"nSamples":500,"individualID.1":44,"individualID.2":55,"transmission":false,"snpDist":11,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":1091,"infectionDiff":1152,"infectionDiffY":3.15616,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"044_056","label":"SNPs","pAvg":0.00083,"pSD":0.00267,"pScaled":0.0002,"pRank":54,"nSamples":500,"individualID.1":44,"individualID.2":56,"transmission":false,"snpDist":11,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":1515,"infectionDiff":1236,"infectionDiffY":3.3863,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"044_057","label":"SNPs","pAvg":0.00039,"pSD":0.0012,"pScaled":0.00008,"pRank":72,"nSamples":500,"individualID.1":44,"individualID.2":57,"transmission":false,"snpDist":12,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":2078,"infectionDiff":1886,"infectionDiffY":5.16712,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"044_058","label":"SNPs","pAvg":0.00039,"pSD":0.00131,"pScaled":0.00039,"pRank":65,"nSamples":500,"individualID.1":44,"individualID.2":58,"transmission":false,"snpDist":13,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":2363,"infectionDiff":1575,"infectionDiffY":4.31507,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"044_059","label":"SNPs","pAvg":0.00556,"pSD":0.0173,"pScaled":0.008,"pRank":26,"nSamples":500,"individualID.1":44,"individualID.2":59,"transmission":false,"snpDist":13,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":1742,"infectionDiff":39,"infectionDiffY":0.10685,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"044_060","label":"SNPs","pAvg":0.00076,"pSD":0.00238,"pScaled":0.00037,"pRank":80,"nSamples":500,"individualID.1":44,"individualID.2":60,"transmission":false,"snpDist":11,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":2404,"infectionDiff":2217,"infectionDiffY":6.07397,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"044_061","label":"SNPs","pAvg":0.00584,"pSD":0.00228,"pScaled":0.01109,"pRank":16,"nSamples":500,"individualID.1":44,"individualID.2":61,"transmission":false,"snpDist":10,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":2197,"infectionDiff":1435,"infectionDiffY":3.93151,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"044_062","label":"SNPs","pAvg":0.71693,"pSD":0.43441,"pScaled":0.18976,"pRank":1,"nSamples":167,"individualID.1":44,"individualID.2":62,"transmission":false,"snpDist":1,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":932,"infectionDiff":339,"infectionDiffY":0.92877,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":true} {"pairID":"044_063","label":"SNPs","pAvg":0.84286,"pSD":0.35962,"pScaled":0.40556,"pRank":1,"nSamples":311,"individualID.1":44,"individualID.2":63,"transmission":false,"snpDist":2,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":364,"infectionDiff":134,"infectionDiffY":0.36712,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":true} {"pairID":"044_064","label":"SNPs","pAvg":0.00278,"pSD":0.00871,"pScaled":0.00105,"pRank":34,"nSamples":500,"individualID.1":44,"individualID.2":64,"transmission":false,"snpDist":12,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":1146,"infectionDiff":1116,"infectionDiffY":3.05753,"timeCat":"4","Z1":"1","Z2":"1","Z3":"2","Z4":"2","snpClose":false} {"pairID":"044_065","label":"SNPs","pAvg":0.00048,"pSD":0.00154,"pScaled":0.00037,"pRank":50,"nSamples":500,"individualID.1":44,"individualID.2":65,"transmission":false,"snpDist":11,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":1154,"infectionDiff":1049,"infectionDiffY":2.87397,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"044_066","label":"SNPs","pAvg":0.00245,"pSD":0.00774,"pScaled":0.00065,"pRank":46,"nSamples":500,"individualID.1":44,"individualID.2":66,"transmission":false,"snpDist":12,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":1301,"infectionDiff":1196,"infectionDiffY":3.27671,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"044_067","label":"SNPs","pAvg":0.00042,"pSD":0.00134,"pScaled":0.00011,"pRank":91,"nSamples":500,"individualID.1":44,"individualID.2":67,"transmission":false,"snpDist":13,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":2423,"infectionDiff":2281,"infectionDiffY":6.24932,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"044_068","label":"SNPs","pAvg":0.01904,"pSD":0.0052,"pScaled":0.00416,"pRank":24,"nSamples":50,"individualID.1":44,"individualID.2":68,"transmission":false,"snpDist":8,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":2029,"infectionDiff":1933,"infectionDiffY":5.29589,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"044_069","label":"SNPs","pAvg":0.00285,"pSD":0.00088,"pScaled":0.00091,"pRank":49,"nSamples":50,"individualID.1":44,"individualID.2":69,"transmission":false,"snpDist":9,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":2074,"infectionDiff":1960,"infectionDiffY":5.36986,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"044_070","label":"SNPs","pAvg":0.74995,"pSD":0.42547,"pScaled":0.23221,"pRank":3,"nSamples":194,"individualID.1":44,"individualID.2":70,"transmission":false,"snpDist":2,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":611,"infectionDiff":377,"infectionDiffY":1.03288,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":true} {"pairID":"044_071","label":"SNPs","pAvg":0.02961,"pSD":0.00726,"pScaled":0.03013,"pRank":13,"nSamples":500,"individualID.1":44,"individualID.2":71,"transmission":false,"snpDist":6,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":2129,"infectionDiff":636,"infectionDiffY":1.74247,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"044_072","label":"SNPs","pAvg":0.62607,"pSD":0.47778,"pScaled":0.19051,"pRank":3,"nSamples":131,"individualID.1":44,"individualID.2":72,"transmission":false,"snpDist":2,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":570,"infectionDiff":555,"infectionDiffY":1.52055,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":true} {"pairID":"044_073","label":"SNPs","pAvg":0.00459,"pSD":0.00172,"pScaled":0.00338,"pRank":19,"nSamples":50,"individualID.1":44,"individualID.2":73,"transmission":false,"snpDist":10,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":1651,"infectionDiff":1306,"infectionDiffY":3.57808,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"044_074","label":"SNPs","pAvg":0.01159,"pSD":0.00413,"pScaled":0.00636,"pRank":3,"nSamples":50,"individualID.1":44,"individualID.2":74,"transmission":false,"snpDist":9,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":1491,"infectionDiff":686,"infectionDiffY":1.87945,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"044_075","label":"SNPs","pAvg":0.00016,"pSD":0.00051,"pScaled":0.0007,"pRank":83,"nSamples":500,"individualID.1":44,"individualID.2":75,"transmission":false,"snpDist":15,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":2157,"infectionDiff":2259,"infectionDiffY":6.18904,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"044_076","label":"SNPs","pAvg":0.00419,"pSD":0.00121,"pScaled":0.00103,"pRank":64,"nSamples":50,"individualID.1":44,"individualID.2":76,"transmission":false,"snpDist":8,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":2392,"infectionDiff":1933,"infectionDiffY":5.29589,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"044_077","label":"SNPs","pAvg":0.0038,"pSD":0.00182,"pScaled":0.00084,"pRank":61,"nSamples":50,"individualID.1":44,"individualID.2":77,"transmission":false,"snpDist":7,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":1545,"infectionDiff":1648,"infectionDiffY":4.51507,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"044_078","label":"SNPs","pAvg":0.00739,"pSD":0.00198,"pScaled":0.00164,"pRank":65,"nSamples":50,"individualID.1":44,"individualID.2":78,"transmission":false,"snpDist":7,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":2236,"infectionDiff":1961,"infectionDiffY":5.3726,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"044_079","label":"SNPs","pAvg":0.01595,"pSD":0.00644,"pScaled":0.00802,"pRank":9,"nSamples":50,"individualID.1":44,"individualID.2":79,"transmission":false,"snpDist":4,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":1644,"infectionDiff":1244,"infectionDiffY":3.40822,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"044_080","label":"SNPs","pAvg":0.00086,"pSD":0.00277,"pScaled":0.00631,"pRank":32,"nSamples":500,"individualID.1":44,"individualID.2":80,"transmission":false,"snpDist":12,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":1653,"infectionDiff":1177,"infectionDiffY":3.22466,"timeCat":"4","Z1":"0","Z2":"1","Z3":"2","Z4":"3","snpClose":false} {"pairID":"044_081","label":"SNPs","pAvg":0.00236,"pSD":0.0007,"pScaled":0.00059,"pRank":68,"nSamples":50,"individualID.1":44,"individualID.2":81,"transmission":false,"snpDist":7,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":2369,"infectionDiff":2343,"infectionDiffY":6.41918,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"044_082","label":"SNPs","pAvg":0.0123,"pSD":0.00417,"pScaled":0.00268,"pRank":30,"nSamples":50,"individualID.1":44,"individualID.2":82,"transmission":false,"snpDist":9,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":2373,"infectionDiff":2421,"infectionDiffY":6.63288,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"044_083","label":"SNPs","pAvg":0.01023,"pSD":0.00277,"pScaled":0.00398,"pRank":31,"nSamples":50,"individualID.1":44,"individualID.2":83,"transmission":false,"snpDist":9,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":2149,"infectionDiff":1890,"infectionDiffY":5.17808,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"044_084","label":"SNPs","pAvg":0.00766,"pSD":0.00239,"pScaled":0.00386,"pRank":10,"nSamples":50,"individualID.1":44,"individualID.2":84,"transmission":false,"snpDist":6,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":2392,"infectionDiff":1938,"infectionDiffY":5.30959,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"044_085","label":"SNPs","pAvg":0.00865,"pSD":0.00435,"pScaled":0.00296,"pRank":8,"nSamples":50,"individualID.1":44,"individualID.2":85,"transmission":false,"snpDist":4,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":1504,"infectionDiff":1603,"infectionDiffY":4.39178,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"044_086","label":"SNPs","pAvg":0.00632,"pSD":0.0024,"pScaled":0.00201,"pRank":17,"nSamples":50,"individualID.1":44,"individualID.2":86,"transmission":false,"snpDist":9,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":1342,"infectionDiff":1232,"infectionDiffY":3.37534,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"044_087","label":"SNPs","pAvg":0.00038,"pSD":0.00123,"pScaled":0.00031,"pRank":59,"nSamples":500,"individualID.1":44,"individualID.2":87,"transmission":false,"snpDist":13,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":1877,"infectionDiff":1771,"infectionDiffY":4.85205,"timeCat":"5","Z1":"0","Z2":"1","Z3":"2","Z4":"3","snpClose":false} {"pairID":"044_088","label":"SNPs","pAvg":0.00737,"pSD":0.00238,"pScaled":0.00143,"pRank":49,"nSamples":50,"individualID.1":44,"individualID.2":88,"transmission":false,"snpDist":8,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":1986,"infectionDiff":2106,"infectionDiffY":5.76986,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"044_089","label":"SNPs","pAvg":0.00889,"pSD":0.00236,"pScaled":0.00285,"pRank":9,"nSamples":50,"individualID.1":44,"individualID.2":89,"transmission":false,"snpDist":5,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":2278,"infectionDiff":1942,"infectionDiffY":5.32055,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"044_090","label":"SNPs","pAvg":0.00892,"pSD":0.0024,"pScaled":0.00231,"pRank":19,"nSamples":50,"individualID.1":44,"individualID.2":90,"transmission":false,"snpDist":6,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":2349,"infectionDiff":2168,"infectionDiffY":5.93973,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"044_091","label":"SNPs","pAvg":0.01509,"pSD":0.00703,"pScaled":0.00756,"pRank":8,"nSamples":50,"individualID.1":44,"individualID.2":91,"transmission":false,"snpDist":5,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":2370,"infectionDiff":1760,"infectionDiffY":4.82192,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"044_092","label":"SNPs","pAvg":0.00764,"pSD":0.00224,"pScaled":0.0031,"pRank":9,"nSamples":50,"individualID.1":44,"individualID.2":92,"transmission":false,"snpDist":5,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":2417,"infectionDiff":1911,"infectionDiffY":5.23562,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"044_093","label":"SNPs","pAvg":0.01397,"pSD":0.00361,"pScaled":0.00379,"pRank":10,"nSamples":50,"individualID.1":44,"individualID.2":93,"transmission":false,"snpDist":6,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":2254,"infectionDiff":2136,"infectionDiffY":5.85205,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"044_094","label":"SNPs","pAvg":0.00014,"pSD":0.00045,"pScaled":0.00005,"pRank":97,"nSamples":500,"individualID.1":44,"individualID.2":94,"transmission":false,"snpDist":13,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":2300,"infectionDiff":2408,"infectionDiffY":6.59726,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"044_095","label":"SNPs","pAvg":0.0004,"pSD":0.00126,"pScaled":0.0002,"pRank":58,"nSamples":500,"individualID.1":44,"individualID.2":95,"transmission":false,"snpDist":13,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":1882,"infectionDiff":1840,"infectionDiffY":5.0411,"timeCat":"6","Z1":"0","Z2":"1","Z3":"2","Z4":"3","snpClose":false} {"pairID":"044_096","label":"SNPs","pAvg":0.00028,"pSD":0.00089,"pScaled":0.0001,"pRank":80,"nSamples":500,"individualID.1":44,"individualID.2":96,"transmission":false,"snpDist":13,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":1977,"infectionDiff":2072,"infectionDiffY":5.67671,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"044_097","label":"SNPs","pAvg":0.01505,"pSD":0.00415,"pScaled":0.00337,"pRank":21,"nSamples":50,"individualID.1":44,"individualID.2":97,"transmission":false,"snpDist":5,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":2220,"infectionDiff":2228,"infectionDiffY":6.10411,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"044_098","label":"SNPs","pAvg":0.00455,"pSD":0.00134,"pScaled":0.00129,"pRank":21,"nSamples":50,"individualID.1":44,"individualID.2":98,"transmission":false,"snpDist":5,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":2039,"infectionDiff":2001,"infectionDiffY":5.48219,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"044_099","label":"SNPs","pAvg":0.00129,"pSD":0.0004,"pScaled":0.00044,"pRank":54,"nSamples":50,"individualID.1":44,"individualID.2":99,"transmission":false,"snpDist":10,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":2022,"infectionDiff":1865,"infectionDiffY":5.10959,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"044_100","label":"SNPs","pAvg":0.00391,"pSD":0.0011,"pScaled":0.00115,"pRank":69,"nSamples":50,"individualID.1":44,"individualID.2":100,"transmission":false,"snpDist":10,"infectionDate.1":"1992-12-13 02:48:39","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1993-05-06 20:23:34","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":2221,"infectionDiff":2243,"infectionDiffY":6.14521,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"045_023","label":"SNPs","pAvg":0.00229,"pSD":0.00728,"pScaled":0.00102,"pRank":71,"nSamples":500,"individualID.1":45,"individualID.2":23,"transmission":false,"snpDist":12,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":622,"infectionDiff":1057,"infectionDiffY":2.89589,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"045_026","label":"SNPs","pAvg":0.00405,"pSD":0.01263,"pScaled":0.00142,"pRank":49,"nSamples":500,"individualID.1":45,"individualID.2":26,"transmission":false,"snpDist":11,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":226,"infectionDiff":354,"infectionDiffY":0.96986,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"045_027","label":"SNPs","pAvg":0.01341,"pSD":0.00373,"pScaled":0.00479,"pRank":30,"nSamples":50,"individualID.1":45,"individualID.2":27,"transmission":false,"snpDist":10,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":398,"infectionDiff":943,"infectionDiffY":2.58356,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"045_033","label":"SNPs","pAvg":0.03381,"pSD":0.00815,"pScaled":0.01541,"pRank":6,"nSamples":50,"individualID.1":45,"individualID.2":33,"transmission":false,"snpDist":5,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":-157,"infectionDiff":625,"infectionDiffY":1.71233,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"045_036","label":"SNPs","pAvg":0.03624,"pSD":0.00766,"pScaled":0.0098,"pRank":16,"nSamples":50,"individualID.1":45,"individualID.2":36,"transmission":false,"snpDist":10,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":-396,"infectionDiff":233,"infectionDiffY":0.63836,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"045_040","label":"SNPs","pAvg":0.00211,"pSD":0.00659,"pScaled":0.00189,"pRank":56,"nSamples":500,"individualID.1":45,"individualID.2":40,"transmission":false,"snpDist":13,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":-374,"infectionDiff":489,"infectionDiffY":1.33973,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"045_052","label":"SNPs","pAvg":0.00301,"pSD":0.00932,"pScaled":0.00113,"pRank":55,"nSamples":500,"individualID.1":45,"individualID.2":52,"transmission":false,"snpDist":12,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":470,"infectionDiff":505,"infectionDiffY":1.38356,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"045_054","label":"SNPs","pAvg":0.00233,"pSD":0.0072,"pScaled":0.00061,"pRank":59,"nSamples":500,"individualID.1":45,"individualID.2":54,"transmission":false,"snpDist":13,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":329,"infectionDiff":894,"infectionDiffY":2.44932,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"045_055","label":"SNPs","pAvg":0.00485,"pSD":0.01516,"pScaled":0.00149,"pRank":34,"nSamples":500,"individualID.1":45,"individualID.2":55,"transmission":false,"snpDist":13,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":-688,"infectionDiff":162,"infectionDiffY":0.44384,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"045_056","label":"SNPs","pAvg":0.00387,"pSD":0.01215,"pScaled":0.00092,"pRank":39,"nSamples":500,"individualID.1":45,"individualID.2":56,"transmission":false,"snpDist":13,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":-264,"infectionDiff":246,"infectionDiffY":0.67397,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"045_057","label":"SNPs","pAvg":0.00206,"pSD":0.00647,"pScaled":0.00041,"pRank":50,"nSamples":500,"individualID.1":45,"individualID.2":57,"transmission":false,"snpDist":14,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":299,"infectionDiff":896,"infectionDiffY":2.45479,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"045_058","label":"SNPs","pAvg":0.00293,"pSD":0.00915,"pScaled":0.00289,"pRank":48,"nSamples":500,"individualID.1":45,"individualID.2":58,"transmission":false,"snpDist":16,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":584,"infectionDiff":585,"infectionDiffY":1.60274,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"045_060","label":"SNPs","pAvg":0.00099,"pSD":0.00317,"pScaled":0.00048,"pRank":75,"nSamples":500,"individualID.1":45,"individualID.2":60,"transmission":false,"snpDist":14,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":626,"infectionDiff":1227,"infectionDiffY":3.36164,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"045_061","label":"SNPs","pAvg":0.00177,"pSD":0.00552,"pScaled":0.00337,"pRank":40,"nSamples":500,"individualID.1":45,"individualID.2":61,"transmission":false,"snpDist":13,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":419,"infectionDiff":444,"infectionDiffY":1.21644,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"045_064","label":"SNPs","pAvg":0.00629,"pSD":0.01944,"pScaled":0.00239,"pRank":21,"nSamples":500,"individualID.1":45,"individualID.2":64,"transmission":false,"snpDist":14,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":-632,"infectionDiff":125,"infectionDiffY":0.34247,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"045_065","label":"SNPs","pAvg":0.00219,"pSD":0.00692,"pScaled":0.00169,"pRank":33,"nSamples":500,"individualID.1":45,"individualID.2":65,"transmission":false,"snpDist":13,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":-624,"infectionDiff":59,"infectionDiffY":0.16164,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"045_066","label":"SNPs","pAvg":0.00392,"pSD":0.01207,"pScaled":0.00103,"pRank":38,"nSamples":500,"individualID.1":45,"individualID.2":66,"transmission":false,"snpDist":14,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":-477,"infectionDiff":205,"infectionDiffY":0.56164,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"045_067","label":"SNPs","pAvg":0.00136,"pSD":0.00443,"pScaled":0.00034,"pRank":74,"nSamples":500,"individualID.1":45,"individualID.2":67,"transmission":false,"snpDist":15,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":645,"infectionDiff":1291,"infectionDiffY":3.53699,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"045_068","label":"SNPs","pAvg":0.00204,"pSD":0.00645,"pScaled":0.00045,"pRank":76,"nSamples":500,"individualID.1":45,"individualID.2":68,"transmission":false,"snpDist":11,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":251,"infectionDiff":942,"infectionDiffY":2.58082,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"045_069","label":"SNPs","pAvg":0.00152,"pSD":0.00471,"pScaled":0.00049,"pRank":67,"nSamples":500,"individualID.1":45,"individualID.2":69,"transmission":false,"snpDist":12,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":296,"infectionDiff":969,"infectionDiffY":2.65479,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"045_073","label":"SNPs","pAvg":0.00125,"pSD":0.0039,"pScaled":0.00092,"pRank":46,"nSamples":500,"individualID.1":45,"individualID.2":73,"transmission":false,"snpDist":13,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":-127,"infectionDiff":315,"infectionDiffY":0.86301,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"045_075","label":"SNPs","pAvg":0.00034,"pSD":0.00109,"pScaled":0.0015,"pRank":58,"nSamples":500,"individualID.1":45,"individualID.2":75,"transmission":false,"snpDist":17,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":379,"infectionDiff":1269,"infectionDiffY":3.47671,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"045_076","label":"SNPs","pAvg":0.00485,"pSD":0.01506,"pScaled":0.00119,"pRank":60,"nSamples":500,"individualID.1":45,"individualID.2":76,"transmission":false,"snpDist":11,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":614,"infectionDiff":942,"infectionDiffY":2.58082,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"045_077","label":"SNPs","pAvg":0.03047,"pSD":0.00729,"pScaled":0.00674,"pRank":15,"nSamples":50,"individualID.1":45,"individualID.2":77,"transmission":false,"snpDist":10,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":-233,"infectionDiff":657,"infectionDiffY":1.8,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"045_078","label":"SNPs","pAvg":0.01484,"pSD":0.00374,"pScaled":0.00329,"pRank":31,"nSamples":50,"individualID.1":45,"individualID.2":78,"transmission":false,"snpDist":10,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":458,"infectionDiff":970,"infectionDiffY":2.65753,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"045_079","label":"SNPs","pAvg":0.00883,"pSD":0.0027,"pScaled":0.00444,"pRank":16,"nSamples":50,"individualID.1":45,"individualID.2":79,"transmission":false,"snpDist":7,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":-134,"infectionDiff":254,"infectionDiffY":0.69589,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"045_080","label":"SNPs","pAvg":0.00124,"pSD":0.00387,"pScaled":0.00904,"pRank":25,"nSamples":500,"individualID.1":45,"individualID.2":80,"transmission":false,"snpDist":15,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":-125,"infectionDiff":186,"infectionDiffY":0.50959,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"045_081","label":"SNPs","pAvg":0.00499,"pSD":0.00162,"pScaled":0.00124,"pRank":36,"nSamples":50,"individualID.1":45,"individualID.2":81,"transmission":false,"snpDist":10,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":591,"infectionDiff":1353,"infectionDiffY":3.70685,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"045_082","label":"SNPs","pAvg":0.00087,"pSD":0.00279,"pScaled":0.00019,"pRank":90,"nSamples":500,"individualID.1":45,"individualID.2":82,"transmission":false,"snpDist":12,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":595,"infectionDiff":1430,"infectionDiffY":3.91781,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"045_083","label":"SNPs","pAvg":0.00208,"pSD":0.00655,"pScaled":0.00081,"pRank":71,"nSamples":500,"individualID.1":45,"individualID.2":83,"transmission":false,"snpDist":12,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":371,"infectionDiff":900,"infectionDiffY":2.46575,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"045_084","label":"SNPs","pAvg":0.0049,"pSD":0.0017,"pScaled":0.00247,"pRank":14,"nSamples":50,"individualID.1":45,"individualID.2":84,"transmission":false,"snpDist":9,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":614,"infectionDiff":948,"infectionDiffY":2.59726,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"045_085","label":"SNPs","pAvg":0.00785,"pSD":0.00203,"pScaled":0.00269,"pRank":10,"nSamples":50,"individualID.1":45,"individualID.2":85,"transmission":false,"snpDist":7,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":-274,"infectionDiff":613,"infectionDiffY":1.67945,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"045_086","label":"SNPs","pAvg":0.00269,"pSD":0.00841,"pScaled":0.00086,"pRank":36,"nSamples":500,"individualID.1":45,"individualID.2":86,"transmission":false,"snpDist":12,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":-436,"infectionDiff":241,"infectionDiffY":0.66027,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"045_087","label":"SNPs","pAvg":0.00198,"pSD":0.00633,"pScaled":0.00162,"pRank":35,"nSamples":500,"individualID.1":45,"individualID.2":87,"transmission":false,"snpDist":16,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":99,"infectionDiff":781,"infectionDiffY":2.13973,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"045_088","label":"SNPs","pAvg":0.00095,"pSD":0.00301,"pScaled":0.00018,"pRank":85,"nSamples":500,"individualID.1":45,"individualID.2":88,"transmission":false,"snpDist":11,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":208,"infectionDiff":1115,"infectionDiffY":3.05479,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"045_089","label":"SNPs","pAvg":0.00588,"pSD":0.00171,"pScaled":0.00189,"pRank":12,"nSamples":50,"individualID.1":45,"individualID.2":89,"transmission":false,"snpDist":8,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":500,"infectionDiff":952,"infectionDiffY":2.60822,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"045_090","label":"SNPs","pAvg":0.00365,"pSD":0.0014,"pScaled":0.00095,"pRank":43,"nSamples":50,"individualID.1":45,"individualID.2":90,"transmission":false,"snpDist":9,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":570,"infectionDiff":1178,"infectionDiffY":3.2274,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"045_091","label":"SNPs","pAvg":0.01544,"pSD":0.0037,"pScaled":0.00774,"pRank":7,"nSamples":50,"individualID.1":45,"individualID.2":91,"transmission":false,"snpDist":8,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":592,"infectionDiff":769,"infectionDiffY":2.10685,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"045_092","label":"SNPs","pAvg":0.00484,"pSD":0.00167,"pScaled":0.00196,"pRank":12,"nSamples":50,"individualID.1":45,"individualID.2":92,"transmission":false,"snpDist":8,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":639,"infectionDiff":920,"infectionDiffY":2.52055,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"045_093","label":"SNPs","pAvg":0.00587,"pSD":0.00206,"pScaled":0.00159,"pRank":17,"nSamples":50,"individualID.1":45,"individualID.2":93,"transmission":false,"snpDist":9,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":476,"infectionDiff":1146,"infectionDiffY":3.13973,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"045_094","label":"SNPs","pAvg":0.00075,"pSD":0.00241,"pScaled":0.00025,"pRank":79,"nSamples":500,"individualID.1":45,"individualID.2":94,"transmission":false,"snpDist":16,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":522,"infectionDiff":1418,"infectionDiffY":3.88493,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"045_095","label":"SNPs","pAvg":0.00195,"pSD":0.00628,"pScaled":0.00099,"pRank":36,"nSamples":500,"individualID.1":45,"individualID.2":95,"transmission":false,"snpDist":16,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":104,"infectionDiff":849,"infectionDiffY":2.32603,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"045_096","label":"SNPs","pAvg":0.00128,"pSD":0.00401,"pScaled":0.00045,"pRank":66,"nSamples":500,"individualID.1":45,"individualID.2":96,"transmission":false,"snpDist":16,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":199,"infectionDiff":1081,"infectionDiffY":2.96164,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"045_097","label":"SNPs","pAvg":0.00985,"pSD":0.00326,"pScaled":0.00221,"pRank":22,"nSamples":50,"individualID.1":45,"individualID.2":97,"transmission":false,"snpDist":8,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":442,"infectionDiff":1238,"infectionDiffY":3.39178,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"045_098","label":"SNPs","pAvg":0.00541,"pSD":0.00152,"pScaled":0.00154,"pRank":15,"nSamples":50,"individualID.1":45,"individualID.2":98,"transmission":false,"snpDist":8,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":260,"infectionDiff":1011,"infectionDiffY":2.76986,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"045_099","label":"SNPs","pAvg":0.00131,"pSD":0.00405,"pScaled":0.00045,"pRank":53,"nSamples":500,"individualID.1":45,"individualID.2":99,"transmission":false,"snpDist":13,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":243,"infectionDiff":875,"infectionDiffY":2.39726,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"045_100","label":"SNPs","pAvg":0.00264,"pSD":0.00847,"pScaled":0.00078,"pRank":74,"nSamples":500,"individualID.1":45,"individualID.2":100,"transmission":false,"snpDist":13,"infectionDate.1":"1995-08-30 12:16:02","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1998-03-20 03:03:53","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":443,"infectionDiff":1252,"infectionDiffY":3.43014,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"046_009","label":"SNPs","pAvg":0.00345,"pSD":0.01061,"pScaled":0.01537,"pRank":21,"nSamples":500,"individualID.1":46,"individualID.2":9,"transmission":false,"snpDist":14,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":1560,"infectionDiff":564,"infectionDiffY":1.54521,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"046_014","label":"SNPs","pAvg":0.04506,"pSD":0.0129,"pScaled":0.02475,"pRank":9,"nSamples":50,"individualID.1":46,"individualID.2":14,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":-410,"infectionDiff":141,"infectionDiffY":0.3863,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"046_018","label":"SNPs","pAvg":0.02653,"pSD":0.00714,"pScaled":0.03008,"pRank":14,"nSamples":500,"individualID.1":46,"individualID.2":18,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":-517,"infectionDiff":338,"infectionDiffY":0.92603,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"046_021","label":"SNPs","pAvg":0.04421,"pSD":0.01282,"pScaled":0.0422,"pRank":8,"nSamples":500,"individualID.1":46,"individualID.2":21,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":928,"infectionDiff":335,"infectionDiffY":0.91781,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"046_023","label":"SNPs","pAvg":0.01195,"pSD":0.00278,"pScaled":0.00532,"pRank":30,"nSamples":50,"individualID.1":46,"individualID.2":23,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1717,"infectionDiff":2103,"infectionDiffY":5.76164,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"046_026","label":"SNPs","pAvg":0.02725,"pSD":0.00858,"pScaled":0.00957,"pRank":7,"nSamples":50,"individualID.1":46,"individualID.2":26,"transmission":false,"snpDist":9,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1321,"infectionDiff":1399,"infectionDiffY":3.83288,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"046_027","label":"SNPs","pAvg":0.00765,"pSD":0.00234,"pScaled":0.00273,"pRank":56,"nSamples":50,"individualID.1":46,"individualID.2":27,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1493,"infectionDiff":1989,"infectionDiffY":5.44932,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"046_028","label":"SNPs","pAvg":0.0474,"pSD":0.01369,"pScaled":0.01324,"pRank":12,"nSamples":50,"individualID.1":46,"individualID.2":28,"transmission":false,"snpDist":8,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":710,"infectionDiff":813,"infectionDiffY":2.2274,"timeCat":"3","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"046_033","label":"SNPs","pAvg":0.00611,"pSD":0.00292,"pScaled":0.00278,"pRank":32,"nSamples":50,"individualID.1":46,"individualID.2":33,"transmission":false,"snpDist":3,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":938,"infectionDiff":1671,"infectionDiffY":4.57808,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"046_035","label":"SNPs","pAvg":0.02038,"pSD":0.00526,"pScaled":0.0053,"pRank":23,"nSamples":50,"individualID.1":46,"individualID.2":35,"transmission":false,"snpDist":8,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":900,"infectionDiff":468,"infectionDiffY":1.28219,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"046_036","label":"SNPs","pAvg":0.02528,"pSD":0.00756,"pScaled":0.00684,"pRank":22,"nSamples":50,"individualID.1":46,"individualID.2":36,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":699,"infectionDiff":1279,"infectionDiffY":3.50411,"timeCat":"4","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"046_037","label":"SNPs","pAvg":0.07043,"pSD":0.02002,"pScaled":0.07102,"pRank":2,"nSamples":500,"individualID.1":46,"individualID.2":37,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":1086,"infectionDiff":801,"infectionDiffY":2.19452,"timeCat":"3","Z1":"1","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"046_038","label":"SNPs","pAvg":0.05643,"pSD":0.01557,"pScaled":0.067,"pRank":8,"nSamples":500,"individualID.1":46,"individualID.2":38,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":148,"infectionDiff":445,"infectionDiffY":1.21918,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"046_040","label":"SNPs","pAvg":0.00843,"pSD":0.00404,"pScaled":0.00754,"pRank":39,"nSamples":500,"individualID.1":46,"individualID.2":40,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":722,"infectionDiff":1535,"infectionDiffY":4.20548,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"046_043","label":"SNPs","pAvg":0.03943,"pSD":0.00857,"pScaled":0.05322,"pRank":7,"nSamples":500,"individualID.1":46,"individualID.2":43,"transmission":false,"snpDist":4,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":1697,"infectionDiff":154,"infectionDiffY":0.42192,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"046_044","label":"SNPs","pAvg":0.60574,"pSD":0.4751,"pScaled":0.16297,"pRank":4,"nSamples":122,"individualID.1":46,"individualID.2":44,"transmission":false,"snpDist":1,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":-683,"infectionDiff":55,"infectionDiffY":0.15068,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":true} {"pairID":"046_045","label":"SNPs","pAvg":0.03847,"pSD":0.01272,"pScaled":0.02329,"pRank":7,"nSamples":50,"individualID.1":46,"individualID.2":45,"transmission":false,"snpDist":4,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":1095,"infectionDiff":1045,"infectionDiffY":2.86301,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"046_047","label":"SNPs","pAvg":0.74703,"pSD":0.43042,"pScaled":0.16113,"pRank":1,"nSamples":194,"individualID.1":46,"individualID.2":47,"transmission":false,"snpDist":2,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":-54,"infectionDiff":731,"infectionDiffY":2.00274,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":true} {"pairID":"046_048","label":"SNPs","pAvg":0.05603,"pSD":0.01496,"pScaled":0.0247,"pRank":5,"nSamples":50,"individualID.1":46,"individualID.2":48,"transmission":false,"snpDist":3,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":229,"infectionDiff":265,"infectionDiffY":0.72603,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"046_051","label":"SNPs","pAvg":0.03217,"pSD":0.00882,"pScaled":0.01524,"pRank":14,"nSamples":50,"individualID.1":46,"individualID.2":51,"transmission":false,"snpDist":9,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-267,"infectionDiff":523,"infectionDiffY":1.43288,"timeCat":"2","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"046_052","label":"SNPs","pAvg":0.01272,"pSD":0.00662,"pScaled":0.00477,"pRank":28,"nSamples":50,"individualID.1":46,"individualID.2":52,"transmission":false,"snpDist":10,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1566,"infectionDiff":1551,"infectionDiffY":4.24932,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"046_053","label":"SNPs","pAvg":0.00447,"pSD":0.01398,"pScaled":0.00298,"pRank":31,"nSamples":500,"individualID.1":46,"individualID.2":53,"transmission":false,"snpDist":12,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":253,"infectionDiff":1015,"infectionDiffY":2.78082,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"046_054","label":"SNPs","pAvg":0.00773,"pSD":0.0021,"pScaled":0.00201,"pRank":27,"nSamples":50,"individualID.1":46,"individualID.2":54,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1424,"infectionDiff":1939,"infectionDiffY":5.31233,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"046_055","label":"SNPs","pAvg":0.00096,"pSD":0.00306,"pScaled":0.00029,"pRank":52,"nSamples":500,"individualID.1":46,"individualID.2":55,"transmission":false,"snpDist":12,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":408,"infectionDiff":1207,"infectionDiffY":3.30685,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"046_056","label":"SNPs","pAvg":0.00277,"pSD":0.00872,"pScaled":0.00066,"pRank":43,"nSamples":500,"individualID.1":46,"individualID.2":56,"transmission":false,"snpDist":12,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":831,"infectionDiff":1291,"infectionDiffY":3.53699,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"046_057","label":"SNPs","pAvg":0.00129,"pSD":0.00406,"pScaled":0.00026,"pRank":57,"nSamples":500,"individualID.1":46,"individualID.2":57,"transmission":false,"snpDist":13,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1394,"infectionDiff":1941,"infectionDiffY":5.31781,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"046_058","label":"SNPs","pAvg":0.01229,"pSD":0.00597,"pScaled":0.01213,"pRank":25,"nSamples":500,"individualID.1":46,"individualID.2":58,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1679,"infectionDiff":1630,"infectionDiffY":4.46575,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"046_059","label":"SNPs","pAvg":0.03445,"pSD":0.00832,"pScaled":0.04952,"pRank":5,"nSamples":500,"individualID.1":46,"individualID.2":59,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":1059,"infectionDiff":94,"infectionDiffY":0.25753,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"046_060","label":"SNPs","pAvg":0.0009,"pSD":0.00279,"pScaled":0.00044,"pRank":77,"nSamples":500,"individualID.1":46,"individualID.2":60,"transmission":false,"snpDist":12,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1721,"infectionDiff":2272,"infectionDiffY":6.22466,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"046_061","label":"SNPs","pAvg":0.00037,"pSD":0.00125,"pScaled":0.0007,"pRank":59,"nSamples":500,"individualID.1":46,"individualID.2":61,"transmission":false,"snpDist":11,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1514,"infectionDiff":1490,"infectionDiffY":4.08219,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"046_062","label":"SNPs","pAvg":0.69156,"pSD":0.45477,"pScaled":0.18304,"pRank":3,"nSamples":158,"individualID.1":46,"individualID.2":62,"transmission":false,"snpDist":2,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":249,"infectionDiff":394,"infectionDiffY":1.07945,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":true} {"pairID":"046_063","label":"SNPs","pAvg":0.0154,"pSD":0.00463,"pScaled":0.00741,"pRank":15,"nSamples":50,"individualID.1":46,"individualID.2":63,"transmission":false,"snpDist":3,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":-319,"infectionDiff":189,"infectionDiffY":0.51781,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"046_064","label":"SNPs","pAvg":0.00242,"pSD":0.00768,"pScaled":0.00092,"pRank":36,"nSamples":500,"individualID.1":46,"individualID.2":64,"transmission":false,"snpDist":13,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":463,"infectionDiff":1171,"infectionDiffY":3.20822,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"046_065","label":"SNPs","pAvg":0.01544,"pSD":0.00557,"pScaled":0.01192,"pRank":11,"nSamples":50,"individualID.1":46,"individualID.2":65,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":471,"infectionDiff":1104,"infectionDiffY":3.02466,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"046_066","label":"SNPs","pAvg":0.00275,"pSD":0.00857,"pScaled":0.00073,"pRank":43,"nSamples":500,"individualID.1":46,"individualID.2":66,"transmission":false,"snpDist":13,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":618,"infectionDiff":1251,"infectionDiffY":3.4274,"timeCat":"4","Z1":"1","Z2":"1","Z3":"2","Z4":"2","snpClose":false} {"pairID":"046_067","label":"SNPs","pAvg":0.01352,"pSD":0.00401,"pScaled":0.00341,"pRank":37,"nSamples":50,"individualID.1":46,"individualID.2":67,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1740,"infectionDiff":2336,"infectionDiffY":6.4,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"046_068","label":"SNPs","pAvg":0.0056,"pSD":0.00131,"pScaled":0.00122,"pRank":60,"nSamples":50,"individualID.1":46,"individualID.2":68,"transmission":false,"snpDist":9,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":1346,"infectionDiff":1988,"infectionDiffY":5.44658,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"046_069","label":"SNPs","pAvg":0.00444,"pSD":0.00129,"pScaled":0.00142,"pRank":35,"nSamples":50,"individualID.1":46,"individualID.2":69,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1391,"infectionDiff":2015,"infectionDiffY":5.52055,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"046_070","label":"SNPs","pAvg":0.03407,"pSD":0.00965,"pScaled":0.01055,"pRank":17,"nSamples":50,"individualID.1":46,"individualID.2":70,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":-72,"infectionDiff":432,"infectionDiffY":1.18356,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"046_071","label":"SNPs","pAvg":0.03429,"pSD":0.00975,"pScaled":0.03489,"pRank":9,"nSamples":500,"individualID.1":46,"individualID.2":71,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":1446,"infectionDiff":691,"infectionDiffY":1.89315,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"046_072","label":"SNPs","pAvg":0.00729,"pSD":0.00193,"pScaled":0.00222,"pRank":25,"nSamples":50,"individualID.1":46,"individualID.2":72,"transmission":false,"snpDist":3,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":-113,"infectionDiff":610,"infectionDiffY":1.67123,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"046_073","label":"SNPs","pAvg":0.00092,"pSD":0.00293,"pScaled":0.00068,"pRank":49,"nSamples":500,"individualID.1":46,"individualID.2":73,"transmission":false,"snpDist":11,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":968,"infectionDiff":1361,"infectionDiffY":3.72877,"timeCat":"4","Z1":"1","Z2":"1","Z3":"2","Z4":"3","snpClose":false} {"pairID":"046_074","label":"SNPs","pAvg":0.00441,"pSD":0.0015,"pScaled":0.00242,"pRank":20,"nSamples":50,"individualID.1":46,"individualID.2":74,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":808,"infectionDiff":741,"infectionDiffY":2.03014,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"046_075","label":"SNPs","pAvg":0.00032,"pSD":0.00101,"pScaled":0.00139,"pRank":61,"nSamples":500,"individualID.1":46,"individualID.2":75,"transmission":false,"snpDist":16,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1474,"infectionDiff":2314,"infectionDiffY":6.33973,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"046_076","label":"SNPs","pAvg":0.0072,"pSD":0.00204,"pScaled":0.00176,"pRank":53,"nSamples":50,"individualID.1":46,"individualID.2":76,"transmission":false,"snpDist":9,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1709,"infectionDiff":1988,"infectionDiffY":5.44658,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"046_077","label":"SNPs","pAvg":0.00648,"pSD":0.00319,"pScaled":0.00143,"pRank":45,"nSamples":50,"individualID.1":46,"individualID.2":77,"transmission":false,"snpDist":8,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":862,"infectionDiff":1703,"infectionDiffY":4.66575,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"046_078","label":"SNPs","pAvg":0.00886,"pSD":0.00243,"pScaled":0.00196,"pRank":46,"nSamples":50,"individualID.1":46,"individualID.2":78,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1553,"infectionDiff":2016,"infectionDiffY":5.52329,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"046_079","label":"SNPs","pAvg":0.00297,"pSD":0.00132,"pScaled":0.00149,"pRank":34,"nSamples":50,"individualID.1":46,"individualID.2":79,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":961,"infectionDiff":1299,"infectionDiffY":3.5589,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"046_080","label":"SNPs","pAvg":0.00047,"pSD":0.00151,"pScaled":0.00342,"pRank":45,"nSamples":500,"individualID.1":46,"individualID.2":80,"transmission":false,"snpDist":11,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":970,"infectionDiff":1232,"infectionDiffY":3.37534,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"046_081","label":"SNPs","pAvg":0.00474,"pSD":0.00141,"pScaled":0.00118,"pRank":38,"nSamples":50,"individualID.1":46,"individualID.2":81,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1686,"infectionDiff":2398,"infectionDiffY":6.56986,"timeCat":"6","Z1":"1","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"046_082","label":"SNPs","pAvg":0.00374,"pSD":0.00112,"pScaled":0.00082,"pRank":80,"nSamples":50,"individualID.1":46,"individualID.2":82,"transmission":false,"snpDist":10,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1690,"infectionDiff":2476,"infectionDiffY":6.78356,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"046_083","label":"SNPs","pAvg":0.00598,"pSD":0.0014,"pScaled":0.00233,"pRank":53,"nSamples":50,"individualID.1":46,"individualID.2":83,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1466,"infectionDiff":1945,"infectionDiffY":5.32877,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"046_084","label":"SNPs","pAvg":0.00147,"pSD":0.00054,"pScaled":0.00074,"pRank":35,"nSamples":50,"individualID.1":46,"individualID.2":84,"transmission":false,"snpDist":6,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1709,"infectionDiff":1993,"infectionDiffY":5.46027,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"046_085","label":"SNPs","pAvg":0.00155,"pSD":0.00076,"pScaled":0.00053,"pRank":35,"nSamples":50,"individualID.1":46,"individualID.2":85,"transmission":false,"snpDist":4,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":821,"infectionDiff":1658,"infectionDiffY":4.54247,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"046_086","label":"SNPs","pAvg":0.01012,"pSD":0.00341,"pScaled":0.00322,"pRank":14,"nSamples":50,"individualID.1":46,"individualID.2":86,"transmission":false,"snpDist":10,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":659,"infectionDiff":1287,"infectionDiffY":3.52603,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"046_087","label":"SNPs","pAvg":0.00059,"pSD":0.00183,"pScaled":0.00048,"pRank":49,"nSamples":500,"individualID.1":46,"individualID.2":87,"transmission":false,"snpDist":12,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":1194,"infectionDiff":1826,"infectionDiffY":5.00274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"046_088","label":"SNPs","pAvg":0.00436,"pSD":0.00134,"pScaled":0.00084,"pRank":72,"nSamples":50,"individualID.1":46,"individualID.2":88,"transmission":false,"snpDist":9,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":1303,"infectionDiff":2161,"infectionDiffY":5.92055,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"046_089","label":"SNPs","pAvg":0.00178,"pSD":0.00055,"pScaled":0.00057,"pRank":31,"nSamples":50,"individualID.1":46,"individualID.2":89,"transmission":false,"snpDist":5,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1595,"infectionDiff":1997,"infectionDiffY":5.47123,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"046_090","label":"SNPs","pAvg":0.00171,"pSD":0.00049,"pScaled":0.00044,"pRank":53,"nSamples":50,"individualID.1":46,"individualID.2":90,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1666,"infectionDiff":2224,"infectionDiffY":6.09315,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"046_091","label":"SNPs","pAvg":0.00461,"pSD":0.00218,"pScaled":0.00231,"pRank":22,"nSamples":50,"individualID.1":46,"individualID.2":91,"transmission":false,"snpDist":5,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1687,"infectionDiff":1815,"infectionDiffY":4.9726,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"046_092","label":"SNPs","pAvg":0.00146,"pSD":0.00051,"pScaled":0.00059,"pRank":37,"nSamples":50,"individualID.1":46,"individualID.2":92,"transmission":false,"snpDist":5,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1734,"infectionDiff":1966,"infectionDiffY":5.3863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"046_093","label":"SNPs","pAvg":0.00273,"pSD":0.00079,"pScaled":0.00074,"pRank":29,"nSamples":50,"individualID.1":46,"individualID.2":93,"transmission":false,"snpDist":6,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1571,"infectionDiff":2191,"infectionDiffY":6.00274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"046_094","label":"SNPs","pAvg":0.00775,"pSD":0.00221,"pScaled":0.00255,"pRank":31,"nSamples":50,"individualID.1":46,"individualID.2":94,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1617,"infectionDiff":2463,"infectionDiffY":6.74795,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"046_095","label":"SNPs","pAvg":0.00059,"pSD":0.00184,"pScaled":0.0003,"pRank":49,"nSamples":500,"individualID.1":46,"individualID.2":95,"transmission":false,"snpDist":12,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":1199,"infectionDiff":1895,"infectionDiffY":5.19178,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"046_096","label":"SNPs","pAvg":0.00386,"pSD":0.00113,"pScaled":0.00135,"pRank":35,"nSamples":50,"individualID.1":46,"individualID.2":96,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":1294,"infectionDiff":2127,"infectionDiffY":5.8274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"046_097","label":"SNPs","pAvg":0.0046,"pSD":0.00119,"pScaled":0.00103,"pRank":54,"nSamples":50,"individualID.1":46,"individualID.2":97,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1537,"infectionDiff":2283,"infectionDiffY":6.25479,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"046_098","label":"SNPs","pAvg":0.0034,"pSD":0.00101,"pScaled":0.00097,"pRank":28,"nSamples":50,"individualID.1":46,"individualID.2":98,"transmission":false,"snpDist":5,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":1356,"infectionDiff":2056,"infectionDiffY":5.63288,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"046_099","label":"SNPs","pAvg":0.00076,"pSD":0.00238,"pScaled":0.00026,"pRank":62,"nSamples":500,"individualID.1":46,"individualID.2":99,"transmission":false,"snpDist":11,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":1339,"infectionDiff":1920,"infectionDiffY":5.26027,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"046_100","label":"SNPs","pAvg":0.00682,"pSD":0.00218,"pScaled":0.00201,"pRank":54,"nSamples":50,"individualID.1":46,"individualID.2":100,"transmission":false,"infectionDate.1":"1992-10-19 02:24:18","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1995-03-20 22:51:10","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1538,"infectionDiff":2298,"infectionDiffY":6.29589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"047_023","label":"SNPs","pAvg":0.02008,"pSD":0.00708,"pScaled":0.00894,"pRank":17,"nSamples":50,"individualID.1":47,"individualID.2":23,"transmission":false,"snpDist":10,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1771,"infectionDiff":1371,"infectionDiffY":3.75616,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"047_026","label":"SNPs","pAvg":0.02104,"pSD":0.00578,"pScaled":0.00739,"pRank":9,"nSamples":50,"individualID.1":47,"individualID.2":26,"transmission":false,"snpDist":9,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1375,"infectionDiff":668,"infectionDiffY":1.83014,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"047_027","label":"SNPs","pAvg":0.01553,"pSD":0.00435,"pScaled":0.00554,"pRank":23,"nSamples":50,"individualID.1":47,"individualID.2":27,"transmission":false,"snpDist":8,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1547,"infectionDiff":1258,"infectionDiffY":3.44658,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"047_028","label":"SNPs","pAvg":0.05827,"pSD":0.01505,"pScaled":0.01627,"pRank":9,"nSamples":50,"individualID.1":47,"individualID.2":28,"transmission":false,"snpDist":8,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":764,"infectionDiff":82,"infectionDiffY":0.22466,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"047_033","label":"SNPs","pAvg":0.01327,"pSD":0.00385,"pScaled":0.00605,"pRank":13,"nSamples":50,"individualID.1":47,"individualID.2":33,"transmission":false,"snpDist":3,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":992,"infectionDiff":939,"infectionDiffY":2.5726,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"047_036","label":"SNPs","pAvg":0.05424,"pSD":0.01474,"pScaled":0.01467,"pRank":10,"nSamples":50,"individualID.1":47,"individualID.2":36,"transmission":false,"snpDist":8,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":753,"infectionDiff":547,"infectionDiffY":1.49863,"timeCat":"2","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"047_037","label":"SNPs","pAvg":0.00349,"pSD":0.01071,"pScaled":0.00352,"pRank":42,"nSamples":500,"individualID.1":47,"individualID.2":37,"transmission":false,"snpDist":12,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":1140,"infectionDiff":70,"infectionDiffY":0.19178,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"047_040","label":"SNPs","pAvg":0.0021,"pSD":0.00664,"pScaled":0.00188,"pRank":57,"nSamples":500,"individualID.1":47,"individualID.2":40,"transmission":false,"snpDist":11,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":775,"infectionDiff":803,"infectionDiffY":2.2,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"047_045","label":"SNPs","pAvg":0.90579,"pSD":0.28294,"pScaled":0.54821,"pRank":1,"nSamples":500,"individualID.1":47,"individualID.2":45,"transmission":false,"snpDist":2,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":1149,"infectionDiff":314,"infectionDiffY":0.86027,"timeCat":"1","Z1":"0","Z2":"1","Z3":"2","Z4":"2","snpClose":true} {"pairID":"047_052","label":"SNPs","pAvg":0.01372,"pSD":0.00376,"pScaled":0.00515,"pRank":26,"nSamples":50,"individualID.1":47,"individualID.2":52,"transmission":false,"snpDist":10,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1619,"infectionDiff":819,"infectionDiffY":2.24384,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"047_053","label":"SNPs","pAvg":0.00223,"pSD":0.00703,"pScaled":0.00149,"pRank":38,"nSamples":500,"individualID.1":47,"individualID.2":53,"transmission":false,"snpDist":12,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":307,"infectionDiff":284,"infectionDiffY":0.77808,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"047_054","label":"SNPs","pAvg":0.00088,"pSD":0.00286,"pScaled":0.00023,"pRank":67,"nSamples":500,"individualID.1":47,"individualID.2":54,"transmission":false,"snpDist":12,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1478,"infectionDiff":1208,"infectionDiffY":3.30959,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"047_055","label":"SNPs","pAvg":0.00582,"pSD":0.01814,"pScaled":0.00179,"pRank":30,"nSamples":500,"individualID.1":47,"individualID.2":55,"transmission":false,"snpDist":12,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":461,"infectionDiff":476,"infectionDiffY":1.30411,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"047_056","label":"SNPs","pAvg":0.00201,"pSD":0.0062,"pScaled":0.00048,"pRank":45,"nSamples":500,"individualID.1":47,"individualID.2":56,"transmission":false,"snpDist":12,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":885,"infectionDiff":560,"infectionDiffY":1.53425,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"047_057","label":"SNPs","pAvg":0.00092,"pSD":0.0029,"pScaled":0.00018,"pRank":61,"nSamples":500,"individualID.1":47,"individualID.2":57,"transmission":false,"snpDist":13,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1448,"infectionDiff":1210,"infectionDiffY":3.31507,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"047_058","label":"SNPs","pAvg":0.00151,"pSD":0.0047,"pScaled":0.00149,"pRank":54,"nSamples":500,"individualID.1":47,"individualID.2":58,"transmission":false,"snpDist":14,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1733,"infectionDiff":899,"infectionDiffY":2.46301,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"047_060","label":"SNPs","pAvg":0.00065,"pSD":0.00217,"pScaled":0.00032,"pRank":86,"nSamples":500,"individualID.1":47,"individualID.2":60,"transmission":false,"snpDist":12,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1775,"infectionDiff":1541,"infectionDiffY":4.22192,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"047_061","label":"SNPs","pAvg":0.00054,"pSD":0.00168,"pScaled":0.00102,"pRank":56,"nSamples":500,"individualID.1":47,"individualID.2":61,"transmission":false,"snpDist":11,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1568,"infectionDiff":759,"infectionDiffY":2.07945,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"047_064","label":"SNPs","pAvg":0.00264,"pSD":0.00816,"pScaled":0.001,"pRank":35,"nSamples":500,"individualID.1":47,"individualID.2":64,"transmission":false,"snpDist":13,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":517,"infectionDiff":440,"infectionDiffY":1.20548,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"047_065","label":"SNPs","pAvg":0.00078,"pSD":0.00245,"pScaled":0.0006,"pRank":45,"nSamples":500,"individualID.1":47,"individualID.2":65,"transmission":false,"snpDist":12,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":525,"infectionDiff":373,"infectionDiffY":1.02192,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"047_066","label":"SNPs","pAvg":0.00464,"pSD":0.01456,"pScaled":0.00123,"pRank":36,"nSamples":500,"individualID.1":47,"individualID.2":66,"transmission":false,"snpDist":13,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":672,"infectionDiff":519,"infectionDiffY":1.42192,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"047_067","label":"SNPs","pAvg":0.00046,"pSD":0.00153,"pScaled":0.00012,"pRank":90,"nSamples":500,"individualID.1":47,"individualID.2":67,"transmission":false,"snpDist":14,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1794,"infectionDiff":1605,"infectionDiffY":4.39726,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"047_068","label":"SNPs","pAvg":0.02548,"pSD":0.00731,"pScaled":0.00557,"pRank":22,"nSamples":50,"individualID.1":47,"individualID.2":68,"transmission":false,"snpDist":9,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":1400,"infectionDiff":1256,"infectionDiffY":3.4411,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"047_069","label":"SNPs","pAvg":0.00286,"pSD":0.00128,"pScaled":0.00092,"pRank":48,"nSamples":50,"individualID.1":47,"individualID.2":69,"transmission":false,"snpDist":10,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1445,"infectionDiff":1283,"infectionDiffY":3.51507,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"047_073","label":"SNPs","pAvg":0.00083,"pSD":0.00262,"pScaled":0.00061,"pRank":50,"nSamples":500,"individualID.1":47,"individualID.2":73,"transmission":false,"snpDist":11,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":1022,"infectionDiff":630,"infectionDiffY":1.72603,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"047_074","label":"SNPs","pAvg":0.0088,"pSD":0.00254,"pScaled":0.00483,"pRank":7,"nSamples":50,"individualID.1":47,"individualID.2":74,"transmission":false,"snpDist":10,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":862,"infectionDiff":10,"infectionDiffY":0.0274,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"047_075","label":"SNPs","pAvg":0.00013,"pSD":0.00045,"pScaled":0.00057,"pRank":95,"nSamples":500,"individualID.1":47,"individualID.2":75,"transmission":false,"snpDist":16,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1528,"infectionDiff":1583,"infectionDiffY":4.33699,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"047_076","label":"SNPs","pAvg":0.01644,"pSD":0.00625,"pScaled":0.00403,"pRank":25,"nSamples":50,"individualID.1":47,"individualID.2":76,"transmission":false,"snpDist":9,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1763,"infectionDiff":1256,"infectionDiffY":3.4411,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"047_077","label":"SNPs","pAvg":0.01546,"pSD":0.004,"pScaled":0.00342,"pRank":25,"nSamples":50,"individualID.1":47,"individualID.2":77,"transmission":false,"snpDist":8,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":916,"infectionDiff":972,"infectionDiffY":2.66301,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"047_078","label":"SNPs","pAvg":0.01409,"pSD":0.00492,"pScaled":0.00312,"pRank":35,"nSamples":50,"individualID.1":47,"individualID.2":78,"transmission":false,"snpDist":8,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1607,"infectionDiff":1285,"infectionDiffY":3.52055,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"047_079","label":"SNPs","pAvg":0.02101,"pSD":0.00554,"pScaled":0.01056,"pRank":5,"nSamples":50,"individualID.1":47,"individualID.2":79,"transmission":false,"snpDist":5,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":1015,"infectionDiff":568,"infectionDiffY":1.55616,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"047_080","label":"SNPs","pAvg":0.00108,"pSD":0.00341,"pScaled":0.00792,"pRank":26,"nSamples":500,"individualID.1":47,"individualID.2":80,"transmission":false,"snpDist":13,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":1024,"infectionDiff":500,"infectionDiffY":1.36986,"timeCat":"2","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"047_081","label":"SNPs","pAvg":0.00201,"pSD":0.00097,"pScaled":0.0005,"pRank":79,"nSamples":50,"individualID.1":47,"individualID.2":81,"transmission":false,"snpDist":8,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1740,"infectionDiff":1667,"infectionDiffY":4.56712,"timeCat":"5","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"047_082","label":"SNPs","pAvg":0.00748,"pSD":0.00321,"pScaled":0.00163,"pRank":50,"nSamples":50,"individualID.1":47,"individualID.2":82,"transmission":false,"snpDist":10,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1744,"infectionDiff":1744,"infectionDiffY":4.77808,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"047_083","label":"SNPs","pAvg":0.026,"pSD":0.00672,"pScaled":0.01011,"pRank":14,"nSamples":50,"individualID.1":47,"individualID.2":83,"transmission":false,"snpDist":10,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1520,"infectionDiff":1214,"infectionDiffY":3.32603,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"047_084","label":"SNPs","pAvg":0.01018,"pSD":0.00338,"pScaled":0.00513,"pRank":8,"nSamples":50,"individualID.1":47,"individualID.2":84,"transmission":false,"snpDist":7,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1763,"infectionDiff":1262,"infectionDiffY":3.45753,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"047_085","label":"SNPs","pAvg":0.013,"pSD":0.00353,"pScaled":0.00445,"pRank":6,"nSamples":50,"individualID.1":47,"individualID.2":85,"transmission":false,"snpDist":5,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":875,"infectionDiff":927,"infectionDiffY":2.53973,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"047_086","label":"SNPs","pAvg":0.0058,"pSD":0.00161,"pScaled":0.00185,"pRank":18,"nSamples":50,"individualID.1":47,"individualID.2":86,"transmission":false,"snpDist":10,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":713,"infectionDiff":555,"infectionDiffY":1.52055,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"047_087","label":"SNPs","pAvg":0.00082,"pSD":0.00264,"pScaled":0.00067,"pRank":44,"nSamples":500,"individualID.1":47,"individualID.2":87,"transmission":false,"snpDist":14,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":1248,"infectionDiff":1095,"infectionDiffY":3,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"047_088","label":"SNPs","pAvg":0.01406,"pSD":0.00515,"pScaled":0.00272,"pRank":26,"nSamples":50,"individualID.1":47,"individualID.2":88,"transmission":false,"snpDist":9,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":1357,"infectionDiff":1430,"infectionDiffY":3.91781,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"047_089","label":"SNPs","pAvg":0.00877,"pSD":0.0035,"pScaled":0.00281,"pRank":10,"nSamples":50,"individualID.1":47,"individualID.2":89,"transmission":false,"snpDist":6,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1649,"infectionDiff":1266,"infectionDiffY":3.46849,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"047_090","label":"SNPs","pAvg":0.00406,"pSD":0.0019,"pScaled":0.00105,"pRank":41,"nSamples":50,"individualID.1":47,"individualID.2":90,"transmission":false,"snpDist":7,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1719,"infectionDiff":1492,"infectionDiffY":4.08767,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"047_091","label":"SNPs","pAvg":0.02314,"pSD":0.00668,"pScaled":0.0116,"pRank":4,"nSamples":50,"individualID.1":47,"individualID.2":91,"transmission":false,"snpDist":6,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1741,"infectionDiff":1083,"infectionDiffY":2.96712,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"047_092","label":"SNPs","pAvg":0.01034,"pSD":0.00334,"pScaled":0.0042,"pRank":7,"nSamples":50,"individualID.1":47,"individualID.2":92,"transmission":false,"snpDist":6,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1788,"infectionDiff":1235,"infectionDiffY":3.38356,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"047_093","label":"SNPs","pAvg":0.01409,"pSD":0.00526,"pScaled":0.00383,"pRank":9,"nSamples":50,"individualID.1":47,"individualID.2":93,"transmission":false,"snpDist":7,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1625,"infectionDiff":1460,"infectionDiffY":4,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"047_094","label":"SNPs","pAvg":0.00015,"pSD":0.00051,"pScaled":0.00005,"pRank":96,"nSamples":500,"individualID.1":47,"individualID.2":94,"transmission":false,"snpDist":14,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1671,"infectionDiff":1732,"infectionDiffY":4.74521,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"047_095","label":"SNPs","pAvg":0.00052,"pSD":0.00169,"pScaled":0.00026,"pRank":55,"nSamples":500,"individualID.1":47,"individualID.2":95,"transmission":false,"snpDist":14,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":1253,"infectionDiff":1164,"infectionDiffY":3.18904,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"047_096","label":"SNPs","pAvg":0.00035,"pSD":0.00113,"pScaled":0.00012,"pRank":78,"nSamples":500,"individualID.1":47,"individualID.2":96,"transmission":false,"snpDist":14,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":1348,"infectionDiff":1396,"infectionDiffY":3.82466,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"047_097","label":"SNPs","pAvg":0.00668,"pSD":0.00316,"pScaled":0.0015,"pRank":43,"nSamples":50,"individualID.1":47,"individualID.2":97,"transmission":false,"snpDist":6,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1591,"infectionDiff":1552,"infectionDiffY":4.25205,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"047_098","label":"SNPs","pAvg":0.00841,"pSD":0.00354,"pScaled":0.00239,"pRank":13,"nSamples":50,"individualID.1":47,"individualID.2":98,"transmission":false,"snpDist":6,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":1409,"infectionDiff":1325,"infectionDiffY":3.63014,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"047_099","label":"SNPs","pAvg":0.00029,"pSD":0.00092,"pScaled":0.0001,"pRank":70,"nSamples":500,"individualID.1":47,"individualID.2":99,"transmission":false,"snpDist":11,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":1392,"infectionDiff":1189,"infectionDiffY":3.25753,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"047_100","label":"SNPs","pAvg":0.00072,"pSD":0.00241,"pScaled":0.00021,"pRank":90,"nSamples":500,"individualID.1":47,"individualID.2":100,"transmission":false,"snpDist":11,"infectionDate.1":"1994-10-20 06:41:42","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1995-01-26 03:24:26","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1592,"infectionDiff":1567,"infectionDiffY":4.29315,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"048_009","label":"SNPs","pAvg":0.00723,"pSD":0.02237,"pScaled":0.03223,"pRank":11,"nSamples":500,"individualID.1":48,"individualID.2":9,"transmission":false,"snpDist":15,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":1330,"infectionDiff":298,"infectionDiffY":0.81644,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"048_018","label":"SNPs","pAvg":0.04421,"pSD":0.01282,"pScaled":0.05011,"pRank":7,"nSamples":500,"individualID.1":48,"individualID.2":18,"transmission":false,"snpDist":8,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":-746,"infectionDiff":72,"infectionDiffY":0.19726,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"048_021","label":"SNPs","pAvg":0.02653,"pSD":0.00714,"pScaled":0.02533,"pRank":20,"nSamples":500,"individualID.1":48,"individualID.2":21,"transmission":false,"snpDist":9,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":699,"infectionDiff":70,"infectionDiffY":0.19178,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"048_023","label":"SNPs","pAvg":0.00052,"pSD":0.00161,"pScaled":0.00023,"pRank":87,"nSamples":500,"individualID.1":48,"individualID.2":23,"transmission":false,"snpDist":11,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1488,"infectionDiff":1837,"infectionDiffY":5.03288,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"048_026","label":"SNPs","pAvg":0.0163,"pSD":0.00473,"pScaled":0.00572,"pRank":12,"nSamples":50,"individualID.1":48,"individualID.2":26,"transmission":false,"snpDist":10,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1092,"infectionDiff":1134,"infectionDiffY":3.10685,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"048_027","label":"SNPs","pAvg":0.00448,"pSD":0.00218,"pScaled":0.0016,"pRank":70,"nSamples":50,"individualID.1":48,"individualID.2":27,"transmission":false,"snpDist":9,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1264,"infectionDiff":1724,"infectionDiffY":4.72329,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"048_028","label":"SNPs","pAvg":0.02661,"pSD":0.00708,"pScaled":0.00743,"pRank":24,"nSamples":50,"individualID.1":48,"individualID.2":28,"transmission":false,"snpDist":9,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":481,"infectionDiff":548,"infectionDiffY":1.50137,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"048_033","label":"SNPs","pAvg":0.0146,"pSD":0.00541,"pScaled":0.00666,"pRank":11,"nSamples":50,"individualID.1":48,"individualID.2":33,"transmission":false,"snpDist":4,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":709,"infectionDiff":1405,"infectionDiffY":3.84932,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"048_035","label":"SNPs","pAvg":0.04679,"pSD":0.01403,"pScaled":0.01217,"pRank":11,"nSamples":50,"individualID.1":48,"individualID.2":35,"transmission":false,"snpDist":9,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":671,"infectionDiff":203,"infectionDiffY":0.55616,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"048_036","label":"SNPs","pAvg":0.024,"pSD":0.00813,"pScaled":0.00649,"pRank":24,"nSamples":50,"individualID.1":48,"individualID.2":36,"transmission":false,"snpDist":9,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":470,"infectionDiff":1013,"infectionDiffY":2.77534,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"048_037","label":"SNPs","pAvg":0.00461,"pSD":0.01459,"pScaled":0.00465,"pRank":37,"nSamples":500,"individualID.1":48,"individualID.2":37,"transmission":false,"snpDist":13,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":857,"infectionDiff":535,"infectionDiffY":1.46575,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"048_038","label":"SNPs","pAvg":0.00434,"pSD":0.01346,"pScaled":0.00515,"pRank":31,"nSamples":500,"individualID.1":48,"individualID.2":38,"transmission":false,"snpDist":14,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":-81,"infectionDiff":180,"infectionDiffY":0.49315,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"048_040","label":"SNPs","pAvg":0.00086,"pSD":0.00277,"pScaled":0.00077,"pRank":65,"nSamples":500,"individualID.1":48,"individualID.2":40,"transmission":false,"snpDist":12,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":493,"infectionDiff":1269,"infectionDiffY":3.47671,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"048_045","label":"SNPs","pAvg":0.05922,"pSD":0.01917,"pScaled":0.03584,"pRank":2,"nSamples":50,"individualID.1":48,"individualID.2":45,"transmission":false,"snpDist":5,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":866,"infectionDiff":780,"infectionDiffY":2.13699,"timeCat":"3","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"048_047","label":"SNPs","pAvg":0.05695,"pSD":0.01671,"pScaled":0.01228,"pRank":11,"nSamples":50,"individualID.1":48,"individualID.2":47,"transmission":false,"snpDist":3,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":-283,"infectionDiff":466,"infectionDiffY":1.27671,"timeCat":"2","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"048_051","label":"SNPs","pAvg":0.06444,"pSD":0.01337,"pScaled":0.03053,"pRank":5,"nSamples":50,"individualID.1":48,"individualID.2":51,"transmission":false,"snpDist":10,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-496,"infectionDiff":258,"infectionDiffY":0.70685,"timeCat":"1","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"048_052","label":"SNPs","pAvg":0.00163,"pSD":0.00513,"pScaled":0.00061,"pRank":59,"nSamples":500,"individualID.1":48,"individualID.2":52,"transmission":false,"snpDist":11,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1337,"infectionDiff":1285,"infectionDiffY":3.52055,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"048_053","label":"SNPs","pAvg":0.00208,"pSD":0.0065,"pScaled":0.00139,"pRank":40,"nSamples":500,"individualID.1":48,"individualID.2":53,"transmission":false,"snpDist":13,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":24,"infectionDiff":750,"infectionDiffY":2.05479,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"048_054","label":"SNPs","pAvg":0.00064,"pSD":0.00214,"pScaled":0.00017,"pRank":69,"nSamples":500,"individualID.1":48,"individualID.2":54,"transmission":false,"snpDist":13,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1195,"infectionDiff":1674,"infectionDiffY":4.5863,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"048_055","label":"SNPs","pAvg":0.00251,"pSD":0.0079,"pScaled":0.00077,"pRank":46,"nSamples":500,"individualID.1":48,"individualID.2":55,"transmission":false,"snpDist":13,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":178,"infectionDiff":942,"infectionDiffY":2.58082,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"048_056","label":"SNPs","pAvg":0.00254,"pSD":0.00787,"pScaled":0.00061,"pRank":44,"nSamples":500,"individualID.1":48,"individualID.2":56,"transmission":false,"snpDist":13,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":602,"infectionDiff":1026,"infectionDiffY":2.81096,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"048_057","label":"SNPs","pAvg":0.00072,"pSD":0.00239,"pScaled":0.00014,"pRank":66,"nSamples":500,"individualID.1":48,"individualID.2":57,"transmission":false,"snpDist":14,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1165,"infectionDiff":1676,"infectionDiffY":4.59178,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"048_058","label":"SNPs","pAvg":0.00163,"pSD":0.00515,"pScaled":0.0016,"pRank":53,"nSamples":500,"individualID.1":48,"individualID.2":58,"transmission":false,"snpDist":15,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1450,"infectionDiff":1365,"infectionDiffY":3.73973,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"048_060","label":"SNPs","pAvg":0.00042,"pSD":0.00131,"pScaled":0.0002,"pRank":92,"nSamples":500,"individualID.1":48,"individualID.2":60,"transmission":false,"snpDist":13,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1492,"infectionDiff":2007,"infectionDiffY":5.49863,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"048_061","label":"SNPs","pAvg":0.00096,"pSD":0.00307,"pScaled":0.00182,"pRank":52,"nSamples":500,"individualID.1":48,"individualID.2":61,"transmission":false,"snpDist":12,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1285,"infectionDiff":1225,"infectionDiffY":3.35616,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"048_062","label":"SNPs","pAvg":0.07351,"pSD":0.01495,"pScaled":0.01946,"pRank":8,"nSamples":50,"individualID.1":48,"individualID.2":62,"transmission":false,"snpDist":3,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":20,"infectionDiff":129,"infectionDiffY":0.35342,"timeCat":"1","Z1":"1","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"048_064","label":"SNPs","pAvg":0.00332,"pSD":0.01066,"pScaled":0.00126,"pRank":32,"nSamples":500,"individualID.1":48,"individualID.2":64,"transmission":false,"snpDist":14,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":234,"infectionDiff":906,"infectionDiffY":2.48219,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"048_065","label":"SNPs","pAvg":0.00152,"pSD":0.00475,"pScaled":0.00117,"pRank":41,"nSamples":500,"individualID.1":48,"individualID.2":65,"transmission":false,"snpDist":13,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":242,"infectionDiff":839,"infectionDiffY":2.29863,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"048_066","label":"SNPs","pAvg":0.00207,"pSD":0.00654,"pScaled":0.00055,"pRank":49,"nSamples":500,"individualID.1":48,"individualID.2":66,"transmission":false,"snpDist":14,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":389,"infectionDiff":985,"infectionDiffY":2.69863,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"048_067","label":"SNPs","pAvg":0.00081,"pSD":0.00252,"pScaled":0.0002,"pRank":83,"nSamples":500,"individualID.1":48,"individualID.2":67,"transmission":false,"snpDist":15,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1511,"infectionDiff":2071,"infectionDiffY":5.67397,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"048_068","label":"SNPs","pAvg":0.00657,"pSD":0.00284,"pScaled":0.00144,"pRank":56,"nSamples":50,"individualID.1":48,"individualID.2":68,"transmission":false,"snpDist":10,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":1117,"infectionDiff":1722,"infectionDiffY":4.71781,"timeCat":"5","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"048_069","label":"SNPs","pAvg":0.0004,"pSD":0.00135,"pScaled":0.00013,"pRank":80,"nSamples":500,"individualID.1":48,"individualID.2":69,"transmission":false,"snpDist":11,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1162,"infectionDiff":1749,"infectionDiffY":4.79178,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"048_070","label":"SNPs","pAvg":0.02623,"pSD":0.00774,"pScaled":0.00812,"pRank":19,"nSamples":50,"individualID.1":48,"individualID.2":70,"transmission":false,"snpDist":4,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":-302,"infectionDiff":167,"infectionDiffY":0.45753,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"048_071","label":"SNPs","pAvg":0.02049,"pSD":0.0054,"pScaled":0.02085,"pRank":20,"nSamples":500,"individualID.1":48,"individualID.2":71,"transmission":false,"snpDist":8,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":1217,"infectionDiff":425,"infectionDiffY":1.16438,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"048_072","label":"SNPs","pAvg":0.01656,"pSD":0.00544,"pScaled":0.00504,"pRank":16,"nSamples":50,"individualID.1":48,"individualID.2":72,"transmission":false,"snpDist":4,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":-342,"infectionDiff":344,"infectionDiffY":0.94247,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"048_073","label":"SNPs","pAvg":0.00041,"pSD":0.00132,"pScaled":0.0003,"pRank":57,"nSamples":500,"individualID.1":48,"individualID.2":73,"transmission":false,"snpDist":12,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":739,"infectionDiff":1096,"infectionDiffY":3.00274,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"048_074","label":"SNPs","pAvg":0.0007,"pSD":0.00219,"pScaled":0.00038,"pRank":46,"nSamples":500,"individualID.1":48,"individualID.2":74,"transmission":false,"snpDist":11,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":579,"infectionDiff":476,"infectionDiffY":1.30411,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"048_075","label":"SNPs","pAvg":0.00014,"pSD":0.00044,"pScaled":0.0006,"pRank":92,"nSamples":500,"individualID.1":48,"individualID.2":75,"transmission":false,"snpDist":17,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1245,"infectionDiff":2049,"infectionDiffY":5.6137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"048_076","label":"SNPs","pAvg":0.0133,"pSD":0.00657,"pScaled":0.00326,"pRank":31,"nSamples":50,"individualID.1":48,"individualID.2":76,"transmission":false,"snpDist":10,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1480,"infectionDiff":1722,"infectionDiffY":4.71781,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"048_077","label":"SNPs","pAvg":0.0166,"pSD":0.0053,"pScaled":0.00367,"pRank":24,"nSamples":50,"individualID.1":48,"individualID.2":77,"transmission":false,"snpDist":9,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":633,"infectionDiff":1438,"infectionDiffY":3.93973,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"048_078","label":"SNPs","pAvg":0.00352,"pSD":0.00171,"pScaled":0.00078,"pRank":79,"nSamples":50,"individualID.1":48,"individualID.2":78,"transmission":false,"snpDist":9,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1324,"infectionDiff":1750,"infectionDiffY":4.79452,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"048_079","label":"SNPs","pAvg":0.00568,"pSD":0.0017,"pScaled":0.00285,"pRank":20,"nSamples":50,"individualID.1":48,"individualID.2":79,"transmission":false,"snpDist":6,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":732,"infectionDiff":1034,"infectionDiffY":2.83288,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"048_080","label":"SNPs","pAvg":0.00079,"pSD":0.00253,"pScaled":0.00579,"pRank":35,"nSamples":500,"individualID.1":48,"individualID.2":80,"transmission":false,"snpDist":14,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":741,"infectionDiff":966,"infectionDiffY":2.64658,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"048_081","label":"SNPs","pAvg":0.00205,"pSD":0.00065,"pScaled":0.00051,"pRank":74,"nSamples":50,"individualID.1":48,"individualID.2":81,"transmission":false,"snpDist":9,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1457,"infectionDiff":2133,"infectionDiffY":5.84384,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"048_082","label":"SNPs","pAvg":0.00043,"pSD":0.00135,"pScaled":0.00009,"pRank":98,"nSamples":500,"individualID.1":48,"individualID.2":82,"transmission":false,"snpDist":11,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1461,"infectionDiff":2210,"infectionDiffY":6.05479,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"048_083","label":"SNPs","pAvg":0.00068,"pSD":0.00223,"pScaled":0.00027,"pRank":76,"nSamples":500,"individualID.1":48,"individualID.2":83,"transmission":false,"snpDist":11,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1237,"infectionDiff":1680,"infectionDiffY":4.60274,"timeCat":"5","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"048_084","label":"SNPs","pAvg":0.00157,"pSD":0.00083,"pScaled":0.00079,"pRank":34,"nSamples":50,"individualID.1":48,"individualID.2":84,"transmission":false,"snpDist":8,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1480,"infectionDiff":1728,"infectionDiffY":4.73425,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"048_085","label":"SNPs","pAvg":0.00301,"pSD":0.00116,"pScaled":0.00103,"pRank":24,"nSamples":50,"individualID.1":48,"individualID.2":85,"transmission":false,"snpDist":6,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":592,"infectionDiff":1393,"infectionDiffY":3.81644,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"048_086","label":"SNPs","pAvg":0.00129,"pSD":0.00408,"pScaled":0.00041,"pRank":51,"nSamples":500,"individualID.1":48,"individualID.2":86,"transmission":false,"snpDist":11,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":430,"infectionDiff":1021,"infectionDiffY":2.79726,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"048_087","label":"SNPs","pAvg":0.00059,"pSD":0.0019,"pScaled":0.00048,"pRank":48,"nSamples":500,"individualID.1":48,"individualID.2":87,"transmission":false,"snpDist":15,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":965,"infectionDiff":1561,"infectionDiffY":4.27671,"timeCat":"5","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"048_088","label":"SNPs","pAvg":0.00379,"pSD":0.00115,"pScaled":0.00073,"pRank":75,"nSamples":50,"individualID.1":48,"individualID.2":88,"transmission":false,"snpDist":10,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":1074,"infectionDiff":1896,"infectionDiffY":5.19452,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"048_089","label":"SNPs","pAvg":0.00149,"pSD":0.00078,"pScaled":0.00048,"pRank":41,"nSamples":50,"individualID.1":48,"individualID.2":89,"transmission":false,"snpDist":7,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1366,"infectionDiff":1732,"infectionDiffY":4.74521,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"048_090","label":"SNPs","pAvg":0.00153,"pSD":0.0005,"pScaled":0.0004,"pRank":57,"nSamples":50,"individualID.1":48,"individualID.2":90,"transmission":false,"snpDist":8,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1437,"infectionDiff":1958,"infectionDiffY":5.36438,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"048_091","label":"SNPs","pAvg":0.00397,"pSD":0.00196,"pScaled":0.00199,"pRank":29,"nSamples":50,"individualID.1":48,"individualID.2":91,"transmission":false,"snpDist":7,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1458,"infectionDiff":1549,"infectionDiffY":4.24384,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"048_092","label":"SNPs","pAvg":0.00164,"pSD":0.00073,"pScaled":0.00067,"pRank":32,"nSamples":50,"individualID.1":48,"individualID.2":92,"transmission":false,"snpDist":7,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1505,"infectionDiff":1700,"infectionDiffY":4.65753,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"048_093","label":"SNPs","pAvg":0.00238,"pSD":0.00073,"pScaled":0.00065,"pRank":34,"nSamples":50,"individualID.1":48,"individualID.2":93,"transmission":false,"snpDist":8,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1342,"infectionDiff":1926,"infectionDiffY":5.27671,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"048_094","label":"SNPs","pAvg":0.00043,"pSD":0.00133,"pScaled":0.00014,"pRank":85,"nSamples":500,"individualID.1":48,"individualID.2":94,"transmission":false,"snpDist":15,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1388,"infectionDiff":2198,"infectionDiffY":6.02192,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"048_095","label":"SNPs","pAvg":0.00062,"pSD":0.00203,"pScaled":0.00031,"pRank":47,"nSamples":500,"individualID.1":48,"individualID.2":95,"transmission":false,"snpDist":15,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":970,"infectionDiff":1630,"infectionDiffY":4.46575,"timeCat":"5","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"048_096","label":"SNPs","pAvg":0.00043,"pSD":0.00135,"pScaled":0.00015,"pRank":76,"nSamples":500,"individualID.1":48,"individualID.2":96,"transmission":false,"snpDist":15,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":1065,"infectionDiff":1862,"infectionDiffY":5.10137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"048_097","label":"SNPs","pAvg":0.00406,"pSD":0.00112,"pScaled":0.00091,"pRank":57,"nSamples":50,"individualID.1":48,"individualID.2":97,"transmission":false,"snpDist":7,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1308,"infectionDiff":2018,"infectionDiffY":5.52877,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"048_098","label":"SNPs","pAvg":0.00139,"pSD":0.00072,"pScaled":0.00039,"pRank":47,"nSamples":50,"individualID.1":48,"individualID.2":98,"transmission":false,"snpDist":7,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":1127,"infectionDiff":1791,"infectionDiffY":4.90685,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"048_099","label":"SNPs","pAvg":0.00045,"pSD":0.00149,"pScaled":0.00015,"pRank":64,"nSamples":500,"individualID.1":48,"individualID.2":99,"transmission":false,"snpDist":12,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":1109,"infectionDiff":1655,"infectionDiffY":4.53425,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"048_100","label":"SNPs","pAvg":0.00152,"pSD":0.00473,"pScaled":0.00045,"pRank":79,"nSamples":500,"individualID.1":48,"individualID.2":100,"transmission":false,"snpDist":12,"infectionDate.1":"1993-07-11 07:39:56","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1995-11-04 23:54:43","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1309,"infectionDiff":2033,"infectionDiffY":5.56986,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"049_009","label":"SNPs","pAvg":0.00249,"pSD":0.00775,"pScaled":0.01108,"pRank":27,"nSamples":500,"individualID.1":49,"individualID.2":9,"transmission":false,"snpDist":15,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":1595,"infectionDiff":680,"infectionDiffY":1.86301,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"049_014","label":"SNPs","pAvg":0.08397,"pSD":0.01519,"pScaled":0.04613,"pRank":3,"nSamples":50,"individualID.1":49,"individualID.2":14,"transmission":false,"snpDist":8,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":-374,"infectionDiff":258,"infectionDiffY":0.70685,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"049_017","label":"SNPs","pAvg":0.00898,"pSD":0.02759,"pScaled":0.01252,"pRank":18,"nSamples":500,"individualID.1":49,"individualID.2":17,"transmission":false,"snpDist":11,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":764,"infectionDiff":30,"infectionDiffY":0.08219,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"1","snpClose":false} {"pairID":"049_018","label":"SNPs","pAvg":0.03999,"pSD":0.00979,"pScaled":0.04533,"pRank":9,"nSamples":500,"individualID.1":49,"individualID.2":18,"transmission":false,"snpDist":8,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":-481,"infectionDiff":454,"infectionDiffY":1.24384,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"049_021","label":"SNPs","pAvg":0.06538,"pSD":0.0147,"pScaled":0.0624,"pRank":2,"nSamples":500,"individualID.1":49,"individualID.2":21,"transmission":false,"snpDist":9,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":964,"infectionDiff":452,"infectionDiffY":1.23836,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"049_023","label":"SNPs","pAvg":0.00182,"pSD":0.00563,"pScaled":0.00081,"pRank":74,"nSamples":500,"individualID.1":49,"individualID.2":23,"transmission":false,"snpDist":11,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1753,"infectionDiff":2219,"infectionDiffY":6.07945,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"1","snpClose":false} {"pairID":"049_026","label":"SNPs","pAvg":0.00754,"pSD":0.00304,"pScaled":0.00265,"pRank":36,"nSamples":50,"individualID.1":49,"individualID.2":26,"transmission":false,"snpDist":10,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1357,"infectionDiff":1516,"infectionDiffY":4.15342,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"049_027","label":"SNPs","pAvg":0.01519,"pSD":0.00354,"pScaled":0.00542,"pRank":24,"nSamples":50,"individualID.1":49,"individualID.2":27,"transmission":false,"snpDist":9,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1529,"infectionDiff":2105,"infectionDiffY":5.76712,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"049_028","label":"SNPs","pAvg":0.0617,"pSD":0.01704,"pScaled":0.01723,"pRank":8,"nSamples":50,"individualID.1":49,"individualID.2":28,"transmission":false,"snpDist":9,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":746,"infectionDiff":930,"infectionDiffY":2.54795,"timeCat":"3","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"049_033","label":"SNPs","pAvg":0.00429,"pSD":0.002,"pScaled":0.00196,"pRank":47,"nSamples":50,"individualID.1":49,"individualID.2":33,"transmission":false,"snpDist":4,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":974,"infectionDiff":1787,"infectionDiffY":4.89589,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"049_035","label":"SNPs","pAvg":0.03984,"pSD":0.00944,"pScaled":0.01036,"pRank":15,"nSamples":50,"individualID.1":49,"individualID.2":35,"transmission":false,"snpDist":9,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":936,"infectionDiff":585,"infectionDiffY":1.60274,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"049_036","label":"SNPs","pAvg":0.03245,"pSD":0.01006,"pScaled":0.00878,"pRank":20,"nSamples":50,"individualID.1":49,"individualID.2":36,"transmission":false,"snpDist":9,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":735,"infectionDiff":1395,"infectionDiffY":3.82192,"timeCat":"4","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"049_037","label":"SNPs","pAvg":0.00366,"pSD":0.01149,"pScaled":0.00369,"pRank":41,"nSamples":500,"individualID.1":49,"individualID.2":37,"transmission":false,"snpDist":13,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":1122,"infectionDiff":917,"infectionDiffY":2.51233,"timeCat":"3","Z1":"1","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"049_038","label":"SNPs","pAvg":0.00389,"pSD":0.012,"pScaled":0.00462,"pRank":33,"nSamples":500,"individualID.1":49,"individualID.2":38,"transmission":false,"snpDist":14,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":184,"infectionDiff":562,"infectionDiffY":1.53973,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"049_039","label":"SNPs","pAvg":0.00504,"pSD":0.01546,"pScaled":0.01087,"pRank":18,"nSamples":500,"individualID.1":49,"individualID.2":39,"transmission":false,"snpDist":15,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":349,"infectionDiff":8,"infectionDiffY":0.02192,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"049_040","label":"SNPs","pAvg":0.00166,"pSD":0.00549,"pScaled":0.00148,"pRank":61,"nSamples":500,"individualID.1":49,"individualID.2":40,"transmission":false,"snpDist":12,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":757,"infectionDiff":1651,"infectionDiffY":4.52329,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"049_043","label":"SNPs","pAvg":0.05422,"pSD":0.01108,"pScaled":0.07318,"pRank":4,"nSamples":500,"individualID.1":49,"individualID.2":43,"transmission":false,"snpDist":5,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":1732,"infectionDiff":270,"infectionDiffY":0.73973,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"049_044","label":"SNPs","pAvg":0.69998,"pSD":0.44237,"pScaled":0.18833,"pRank":2,"nSamples":158,"individualID.1":49,"individualID.2":44,"transmission":false,"snpDist":2,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":-647,"infectionDiff":172,"infectionDiffY":0.47123,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":true} {"pairID":"049_045","label":"SNPs","pAvg":0.01268,"pSD":0.00374,"pScaled":0.00767,"pRank":20,"nSamples":50,"individualID.1":49,"individualID.2":45,"transmission":false,"snpDist":5,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":1131,"infectionDiff":1162,"infectionDiffY":3.18356,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"049_046","label":"SNPs","pAvg":0.0607,"pSD":0.01437,"pScaled":0.03511,"pRank":6,"nSamples":50,"individualID.1":49,"individualID.2":46,"transmission":false,"snpDist":3,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":36,"infectionDiff":117,"infectionDiffY":0.32055,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"049_047","label":"SNPs","pAvg":0.02727,"pSD":0.00786,"pScaled":0.00588,"pRank":19,"nSamples":50,"individualID.1":49,"individualID.2":47,"transmission":false,"snpDist":3,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":-18,"infectionDiff":848,"infectionDiffY":2.32329,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"049_048","label":"SNPs","pAvg":0.0218,"pSD":0.00347,"pScaled":0.00961,"pRank":11,"nSamples":50,"individualID.1":49,"individualID.2":48,"transmission":false,"snpDist":4,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":265,"infectionDiff":382,"infectionDiffY":1.04658,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"049_051","label":"SNPs","pAvg":0.04217,"pSD":0.00953,"pScaled":0.01998,"pRank":12,"nSamples":50,"individualID.1":49,"individualID.2":51,"transmission":false,"snpDist":10,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-231,"infectionDiff":639,"infectionDiffY":1.75068,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"049_052","label":"SNPs","pAvg":0.00086,"pSD":0.00284,"pScaled":0.00032,"pRank":62,"nSamples":500,"individualID.1":49,"individualID.2":52,"transmission":false,"snpDist":11,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1601,"infectionDiff":1667,"infectionDiffY":4.56712,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"049_053","label":"SNPs","pAvg":0.00221,"pSD":0.00694,"pScaled":0.00148,"pRank":39,"nSamples":500,"individualID.1":49,"individualID.2":53,"transmission":false,"snpDist":13,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":289,"infectionDiff":1132,"infectionDiffY":3.10137,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"049_054","label":"SNPs","pAvg":0.00054,"pSD":0.00169,"pScaled":0.00014,"pRank":70,"nSamples":500,"individualID.1":49,"individualID.2":54,"transmission":false,"snpDist":13,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1460,"infectionDiff":2056,"infectionDiffY":5.63288,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"049_055","label":"SNPs","pAvg":0.00195,"pSD":0.0061,"pScaled":0.0006,"pRank":47,"nSamples":500,"individualID.1":49,"individualID.2":55,"transmission":false,"snpDist":13,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":443,"infectionDiff":1324,"infectionDiffY":3.6274,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"049_056","label":"SNPs","pAvg":0.00184,"pSD":0.00576,"pScaled":0.00044,"pRank":48,"nSamples":500,"individualID.1":49,"individualID.2":56,"transmission":false,"snpDist":13,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":867,"infectionDiff":1408,"infectionDiffY":3.85753,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"049_057","label":"SNPs","pAvg":0.00091,"pSD":0.00279,"pScaled":0.00018,"pRank":62,"nSamples":500,"individualID.1":49,"individualID.2":57,"transmission":false,"snpDist":14,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1430,"infectionDiff":2058,"infectionDiffY":5.63836,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"049_058","label":"SNPs","pAvg":0.00083,"pSD":0.00272,"pScaled":0.00082,"pRank":58,"nSamples":500,"individualID.1":49,"individualID.2":58,"transmission":false,"snpDist":15,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1715,"infectionDiff":1747,"infectionDiffY":4.7863,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"049_059","label":"SNPs","pAvg":0.00477,"pSD":0.01475,"pScaled":0.00686,"pRank":27,"nSamples":500,"individualID.1":49,"individualID.2":59,"transmission":false,"snpDist":15,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":1095,"infectionDiff":211,"infectionDiffY":0.57808,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"049_060","label":"SNPs","pAvg":0.00167,"pSD":0.00513,"pScaled":0.00081,"pRank":67,"nSamples":500,"individualID.1":49,"individualID.2":60,"transmission":false,"snpDist":13,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1757,"infectionDiff":2389,"infectionDiffY":6.54521,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"049_061","label":"SNPs","pAvg":0.00015,"pSD":0.00051,"pScaled":0.00029,"pRank":63,"nSamples":500,"individualID.1":49,"individualID.2":61,"transmission":false,"snpDist":12,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1550,"infectionDiff":1606,"infectionDiffY":4.4,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"049_062","label":"SNPs","pAvg":0.03631,"pSD":0.00736,"pScaled":0.00961,"pRank":13,"nSamples":50,"individualID.1":49,"individualID.2":62,"transmission":false,"snpDist":3,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":284,"infectionDiff":511,"infectionDiffY":1.4,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"049_063","label":"SNPs","pAvg":0.04988,"pSD":0.00889,"pScaled":0.024,"pRank":4,"nSamples":50,"individualID.1":49,"individualID.2":63,"transmission":true,"snpDist":4,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":-284,"infectionDiff":305,"infectionDiffY":0.83562,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"049_064","label":"SNPs","pAvg":0.00126,"pSD":0.00402,"pScaled":0.00048,"pRank":46,"nSamples":500,"individualID.1":49,"individualID.2":64,"transmission":false,"snpDist":14,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":499,"infectionDiff":1287,"infectionDiffY":3.52603,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"049_065","label":"SNPs","pAvg":0.00066,"pSD":0.0021,"pScaled":0.00051,"pRank":49,"nSamples":500,"individualID.1":49,"individualID.2":65,"transmission":false,"snpDist":13,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":507,"infectionDiff":1221,"infectionDiffY":3.34521,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"049_066","label":"SNPs","pAvg":0.00377,"pSD":0.01165,"pScaled":0.001,"pRank":39,"nSamples":500,"individualID.1":49,"individualID.2":66,"transmission":false,"snpDist":14,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":654,"infectionDiff":1367,"infectionDiffY":3.74521,"timeCat":"4","Z1":"1","Z2":"1","Z3":"3","Z4":"1","snpClose":false} {"pairID":"049_067","label":"SNPs","pAvg":0.00088,"pSD":0.00269,"pScaled":0.00022,"pRank":80,"nSamples":500,"individualID.1":49,"individualID.2":67,"transmission":false,"snpDist":15,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1776,"infectionDiff":2453,"infectionDiffY":6.72055,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"049_068","label":"SNPs","pAvg":0.00788,"pSD":0.00209,"pScaled":0.00172,"pRank":49,"nSamples":50,"individualID.1":49,"individualID.2":68,"transmission":false,"snpDist":10,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":1382,"infectionDiff":2104,"infectionDiffY":5.76438,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"049_069","label":"SNPs","pAvg":0.00017,"pSD":0.00053,"pScaled":0.00005,"pRank":82,"nSamples":500,"individualID.1":49,"individualID.2":69,"transmission":false,"snpDist":11,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1427,"infectionDiff":2131,"infectionDiffY":5.83836,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"049_070","label":"SNPs","pAvg":0.0666,"pSD":0.01574,"pScaled":0.02062,"pRank":6,"nSamples":50,"individualID.1":49,"individualID.2":70,"transmission":false,"snpDist":4,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":-37,"infectionDiff":549,"infectionDiffY":1.50411,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"049_071","label":"SNPs","pAvg":0.04857,"pSD":0.01426,"pScaled":0.04942,"pRank":5,"nSamples":500,"individualID.1":49,"individualID.2":71,"transmission":false,"snpDist":8,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":1482,"infectionDiff":807,"infectionDiffY":2.21096,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"049_072","label":"SNPs","pAvg":0.02376,"pSD":0.00656,"pScaled":0.00723,"pRank":14,"nSamples":50,"individualID.1":49,"individualID.2":72,"transmission":false,"snpDist":4,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":-77,"infectionDiff":726,"infectionDiffY":1.98904,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"049_073","label":"SNPs","pAvg":0.00039,"pSD":0.00132,"pScaled":0.00029,"pRank":59,"nSamples":500,"individualID.1":49,"individualID.2":73,"transmission":false,"snpDist":12,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":1004,"infectionDiff":1478,"infectionDiffY":4.04932,"timeCat":"5","Z1":"1","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"049_074","label":"SNPs","pAvg":0.00052,"pSD":0.00169,"pScaled":0.00029,"pRank":48,"nSamples":500,"individualID.1":49,"individualID.2":74,"transmission":false,"snpDist":11,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":844,"infectionDiff":858,"infectionDiffY":2.35068,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"049_075","label":"SNPs","pAvg":0.00035,"pSD":0.00108,"pScaled":0.00151,"pRank":57,"nSamples":500,"individualID.1":49,"individualID.2":75,"transmission":false,"snpDist":16,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1510,"infectionDiff":2431,"infectionDiffY":6.66027,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"049_076","label":"SNPs","pAvg":0.0049,"pSD":0.00125,"pScaled":0.0012,"pRank":56,"nSamples":50,"individualID.1":49,"individualID.2":76,"transmission":false,"snpDist":10,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1745,"infectionDiff":2104,"infectionDiffY":5.76438,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"049_077","label":"SNPs","pAvg":0.00428,"pSD":0.00181,"pScaled":0.00095,"pRank":57,"nSamples":50,"individualID.1":49,"individualID.2":77,"transmission":false,"snpDist":9,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":898,"infectionDiff":1819,"infectionDiffY":4.98356,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"049_078","label":"SNPs","pAvg":0.01701,"pSD":0.00363,"pScaled":0.00377,"pRank":25,"nSamples":50,"individualID.1":49,"individualID.2":78,"transmission":false,"snpDist":9,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1589,"infectionDiff":2132,"infectionDiffY":5.8411,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"049_079","label":"SNPs","pAvg":0.00922,"pSD":0.00371,"pScaled":0.00463,"pRank":15,"nSamples":50,"individualID.1":49,"individualID.2":79,"transmission":false,"snpDist":6,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":997,"infectionDiff":1416,"infectionDiffY":3.87945,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"049_080","label":"SNPs","pAvg":0.00037,"pSD":0.00121,"pScaled":0.00273,"pRank":47,"nSamples":500,"individualID.1":49,"individualID.2":80,"transmission":false,"snpDist":14,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":1006,"infectionDiff":1348,"infectionDiffY":3.69315,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"049_081","label":"SNPs","pAvg":0.00381,"pSD":0.00134,"pScaled":0.00095,"pRank":50,"nSamples":50,"individualID.1":49,"individualID.2":81,"transmission":false,"snpDist":9,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1722,"infectionDiff":2515,"infectionDiffY":6.89041,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"049_082","label":"SNPs","pAvg":0.00075,"pSD":0.00236,"pScaled":0.00016,"pRank":92,"nSamples":500,"individualID.1":49,"individualID.2":82,"transmission":false,"snpDist":11,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1726,"infectionDiff":2592,"infectionDiffY":7.10137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"049_083","label":"SNPs","pAvg":0.0008,"pSD":0.00249,"pScaled":0.00031,"pRank":75,"nSamples":500,"individualID.1":49,"individualID.2":83,"transmission":false,"snpDist":11,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1502,"infectionDiff":2062,"infectionDiffY":5.64932,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"049_084","label":"SNPs","pAvg":0.00473,"pSD":0.00099,"pScaled":0.00239,"pRank":15,"nSamples":50,"individualID.1":49,"individualID.2":84,"transmission":false,"snpDist":8,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1745,"infectionDiff":2110,"infectionDiffY":5.78082,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"049_085","label":"SNPs","pAvg":0.00485,"pSD":0.00213,"pScaled":0.00166,"pRank":15,"nSamples":50,"individualID.1":49,"individualID.2":85,"transmission":false,"snpDist":6,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":857,"infectionDiff":1775,"infectionDiffY":4.86301,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"049_086","label":"SNPs","pAvg":0.00038,"pSD":0.00122,"pScaled":0.00012,"pRank":56,"nSamples":500,"individualID.1":49,"individualID.2":86,"transmission":false,"snpDist":11,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":695,"infectionDiff":1403,"infectionDiffY":3.84384,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"049_087","label":"SNPs","pAvg":0.0002,"pSD":0.00063,"pScaled":0.00016,"pRank":68,"nSamples":500,"individualID.1":49,"individualID.2":87,"transmission":false,"snpDist":15,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":1230,"infectionDiff":1943,"infectionDiffY":5.32329,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"049_088","label":"SNPs","pAvg":0.00877,"pSD":0.00244,"pScaled":0.0017,"pRank":34,"nSamples":50,"individualID.1":49,"individualID.2":88,"transmission":false,"snpDist":10,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":1339,"infectionDiff":2277,"infectionDiffY":6.23836,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"049_089","label":"SNPs","pAvg":0.00551,"pSD":0.00139,"pScaled":0.00177,"pRank":13,"nSamples":50,"individualID.1":49,"individualID.2":89,"transmission":false,"snpDist":7,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1631,"infectionDiff":2114,"infectionDiffY":5.79178,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"049_090","label":"SNPs","pAvg":0.00535,"pSD":0.00124,"pScaled":0.00139,"pRank":23,"nSamples":50,"individualID.1":49,"individualID.2":90,"transmission":false,"snpDist":8,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1701,"infectionDiff":2340,"infectionDiffY":6.41096,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"049_091","label":"SNPs","pAvg":0.00921,"pSD":0.00242,"pScaled":0.00462,"pRank":11,"nSamples":50,"individualID.1":49,"individualID.2":91,"transmission":false,"snpDist":7,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1723,"infectionDiff":1931,"infectionDiffY":5.29041,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"049_092","label":"SNPs","pAvg":0.00455,"pSD":0.0011,"pScaled":0.00185,"pRank":15,"nSamples":50,"individualID.1":49,"individualID.2":92,"transmission":false,"snpDist":7,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1770,"infectionDiff":2082,"infectionDiffY":5.70411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"049_093","label":"SNPs","pAvg":0.00587,"pSD":0.00163,"pScaled":0.00159,"pRank":18,"nSamples":50,"individualID.1":49,"individualID.2":93,"transmission":false,"snpDist":8,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1607,"infectionDiff":2308,"infectionDiffY":6.32329,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"049_094","label":"SNPs","pAvg":0.00036,"pSD":0.00113,"pScaled":0.00012,"pRank":88,"nSamples":500,"individualID.1":49,"individualID.2":94,"transmission":false,"snpDist":15,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1653,"infectionDiff":2580,"infectionDiffY":7.06849,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"049_095","label":"SNPs","pAvg":0.0002,"pSD":0.00062,"pScaled":0.0001,"pRank":69,"nSamples":500,"individualID.1":49,"individualID.2":95,"transmission":false,"snpDist":15,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":1235,"infectionDiff":2012,"infectionDiffY":5.51233,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"049_096","label":"SNPs","pAvg":0.00018,"pSD":0.00055,"pScaled":0.00006,"pRank":82,"nSamples":500,"individualID.1":49,"individualID.2":96,"transmission":false,"snpDist":15,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":1330,"infectionDiff":2243,"infectionDiffY":6.14521,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"049_097","label":"SNPs","pAvg":0.00953,"pSD":0.00252,"pScaled":0.00214,"pRank":23,"nSamples":50,"individualID.1":49,"individualID.2":97,"transmission":false,"snpDist":7,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1573,"infectionDiff":2400,"infectionDiffY":6.57534,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"049_098","label":"SNPs","pAvg":0.0107,"pSD":0.00272,"pScaled":0.00304,"pRank":10,"nSamples":50,"individualID.1":49,"individualID.2":98,"transmission":false,"snpDist":7,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":1391,"infectionDiff":2173,"infectionDiffY":5.95342,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"049_099","label":"SNPs","pAvg":0.0003,"pSD":0.00094,"pScaled":0.0001,"pRank":67,"nSamples":500,"individualID.1":49,"individualID.2":99,"transmission":false,"snpDist":12,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":1374,"infectionDiff":2037,"infectionDiffY":5.58082,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"049_100","label":"SNPs","pAvg":0.00047,"pSD":0.00143,"pScaled":0.00014,"pRank":91,"nSamples":500,"individualID.1":49,"individualID.2":100,"transmission":false,"snpDist":12,"infectionDate.1":"1992-06-24 10:11:40","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1995-02-13 03:09:14","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1574,"infectionDiff":2414,"infectionDiffY":6.6137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"050_006","label":"SNPs","pAvg":0.01002,"pSD":0.00214,"pScaled":0.0064,"pRank":18,"nSamples":50,"individualID.1":50,"individualID.2":6,"transmission":false,"snpDist":7,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1992-06-21 16:58:15","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1992-07-30 01:18:18","sampleDiff":-783,"infectionDiff":325,"infectionDiffY":0.89041,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"050_009","label":"SNPs","pAvg":0.00055,"pSD":0.00179,"pScaled":0.00247,"pRank":39,"nSamples":500,"individualID.1":50,"individualID.2":9,"transmission":false,"snpDist":13,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":1741,"infectionDiff":1008,"infectionDiffY":2.76164,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"050_010","label":"SNPs","pAvg":0.02907,"pSD":0.0061,"pScaled":0.02106,"pRank":8,"nSamples":50,"individualID.1":50,"individualID.2":10,"transmission":false,"snpDist":6,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1991-09-19 13:56:02","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1992-07-04 18:06:43","sampleDiff":-808,"infectionDiff":49,"infectionDiffY":0.13425,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"050_014","label":"SNPs","pAvg":0.02393,"pSD":0.00627,"pScaled":0.01315,"pRank":19,"nSamples":50,"individualID.1":50,"individualID.2":14,"transmission":false,"snpDist":6,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":-228,"infectionDiff":586,"infectionDiffY":1.60548,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"050_017","label":"SNPs","pAvg":0.03308,"pSD":0.00772,"pScaled":0.04611,"pRank":10,"nSamples":500,"individualID.1":50,"individualID.2":17,"transmission":false,"snpDist":9,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1992-07-24 04:08:37","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1997-03-18 08:56:40","sampleDiff":910,"infectionDiff":357,"infectionDiffY":0.97808,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"050_018","label":"SNPs","pAvg":0.01531,"pSD":0.00467,"pScaled":0.01735,"pRank":21,"nSamples":500,"individualID.1":50,"individualID.2":18,"transmission":false,"snpDist":8,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":-336,"infectionDiff":782,"infectionDiffY":2.14247,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"050_021","label":"SNPs","pAvg":0.0177,"pSD":0.00575,"pScaled":0.01689,"pRank":21,"nSamples":500,"individualID.1":50,"individualID.2":21,"transmission":false,"snpDist":7,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":1109,"infectionDiff":779,"infectionDiffY":2.13425,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"050_023","label":"SNPs","pAvg":0.00478,"pSD":0.00112,"pScaled":0.00213,"pRank":60,"nSamples":50,"individualID.1":50,"individualID.2":23,"transmission":false,"snpDist":9,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1898,"infectionDiff":2547,"infectionDiffY":6.97808,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"050_026","label":"SNPs","pAvg":0.00186,"pSD":0.00045,"pScaled":0.00065,"pRank":55,"nSamples":50,"individualID.1":50,"individualID.2":26,"transmission":false,"snpDist":8,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1502,"infectionDiff":1844,"infectionDiffY":5.05205,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"050_027","label":"SNPs","pAvg":0.00548,"pSD":0.00142,"pScaled":0.00196,"pRank":65,"nSamples":50,"individualID.1":50,"individualID.2":27,"transmission":false,"snpDist":7,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1675,"infectionDiff":2433,"infectionDiffY":6.66575,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"050_028","label":"SNPs","pAvg":0.01004,"pSD":0.00269,"pScaled":0.0028,"pRank":37,"nSamples":50,"individualID.1":50,"individualID.2":28,"transmission":false,"snpDist":7,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":891,"infectionDiff":1258,"infectionDiffY":3.44658,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"050_030","label":"SNPs","pAvg":0.01128,"pSD":0.00257,"pScaled":0.00788,"pRank":17,"nSamples":50,"individualID.1":50,"individualID.2":30,"transmission":false,"snpDist":4,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1992-04-22 00:17:11","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1992-05-15 21:31:39","sampleDiff":-858,"infectionDiff":264,"infectionDiffY":0.72329,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"050_032","label":"SNPs","pAvg":0.03128,"pSD":0.0074,"pScaled":0.02132,"pRank":9,"nSamples":50,"individualID.1":50,"individualID.2":32,"transmission":false,"snpDist":10,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1992-02-28 04:07:48","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1996-04-14 23:45:54","sampleDiff":572,"infectionDiff":210,"infectionDiffY":0.57534,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"050_033","label":"SNPs","pAvg":0.00299,"pSD":0.00079,"pScaled":0.00136,"pRank":54,"nSamples":50,"individualID.1":50,"individualID.2":33,"transmission":false,"snpDist":10,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":1119,"infectionDiff":2115,"infectionDiffY":5.79452,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"050_035","label":"SNPs","pAvg":0.01511,"pSD":0.00477,"pScaled":0.00393,"pRank":30,"nSamples":50,"individualID.1":50,"individualID.2":35,"transmission":false,"snpDist":3,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":1081,"infectionDiff":912,"infectionDiffY":2.49863,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"050_036","label":"SNPs","pAvg":0.00545,"pSD":0.00235,"pScaled":0.00147,"pRank":56,"nSamples":50,"individualID.1":50,"individualID.2":36,"transmission":false,"snpDist":3,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":880,"infectionDiff":1723,"infectionDiffY":4.72055,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"050_037","label":"SNPs","pAvg":0.00376,"pSD":0.0014,"pScaled":0.00379,"pRank":40,"nSamples":500,"individualID.1":50,"individualID.2":37,"transmission":false,"snpDist":7,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":1268,"infectionDiff":1245,"infectionDiffY":3.41096,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"050_038","label":"SNPs","pAvg":0.00636,"pSD":0.00213,"pScaled":0.00755,"pRank":25,"nSamples":500,"individualID.1":50,"individualID.2":38,"transmission":false,"snpDist":8,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":330,"infectionDiff":890,"infectionDiffY":2.43836,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"050_039","label":"SNPs","pAvg":0.01113,"pSD":0.0024,"pScaled":0.02402,"pRank":12,"nSamples":500,"individualID.1":50,"individualID.2":39,"transmission":false,"snpDist":9,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1992-07-02 08:18:08","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1996-01-28 10:32:27","sampleDiff":495,"infectionDiff":336,"infectionDiffY":0.92055,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"050_040","label":"SNPs","pAvg":0.00451,"pSD":0.00102,"pScaled":0.00404,"pRank":52,"nSamples":500,"individualID.1":50,"individualID.2":40,"transmission":false,"snpDist":6,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":903,"infectionDiff":1979,"infectionDiffY":5.42192,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"050_041","label":"SNPs","pAvg":0.00971,"pSD":0.00227,"pScaled":0.02521,"pRank":14,"nSamples":500,"individualID.1":50,"individualID.2":41,"transmission":false,"snpDist":7,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1992-01-28 05:01:53","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-07-09 07:13:59","sampleDiff":1753,"infectionDiff":179,"infectionDiffY":0.49041,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"050_043","label":"SNPs","pAvg":0.00227,"pSD":0.00693,"pScaled":0.00306,"pRank":32,"nSamples":500,"individualID.1":50,"individualID.2":43,"transmission":false,"snpDist":11,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":1878,"infectionDiff":598,"infectionDiffY":1.63836,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"050_044","label":"SNPs","pAvg":0.04332,"pSD":0.01151,"pScaled":0.01165,"pRank":8,"nSamples":50,"individualID.1":50,"individualID.2":44,"transmission":false,"snpDist":8,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1992-12-13 02:48:39","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1993-05-06 20:23:34","sampleDiff":-502,"infectionDiff":499,"infectionDiffY":1.36712,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"050_045","label":"SNPs","pAvg":0.00017,"pSD":0.00059,"pScaled":0.00011,"pRank":52,"nSamples":500,"individualID.1":50,"individualID.2":45,"transmission":false,"snpDist":11,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":1276,"infectionDiff":1490,"infectionDiffY":4.08219,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"050_046","label":"SNPs","pAvg":0.00761,"pSD":0.00152,"pScaled":0.0044,"pRank":25,"nSamples":50,"individualID.1":50,"individualID.2":46,"transmission":false,"snpDist":9,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1992-10-19 02:24:18","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1995-03-20 22:51:10","sampleDiff":181,"infectionDiff":444,"infectionDiffY":1.21644,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"050_047","label":"SNPs","pAvg":0.0121,"pSD":0.00365,"pScaled":0.00261,"pRank":31,"nSamples":50,"individualID.1":50,"individualID.2":47,"transmission":false,"snpDist":9,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":127,"infectionDiff":1176,"infectionDiffY":3.22192,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"050_048","label":"SNPs","pAvg":0.00936,"pSD":0.00223,"pScaled":0.00413,"pRank":23,"nSamples":50,"individualID.1":50,"individualID.2":48,"transmission":false,"snpDist":10,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":410,"infectionDiff":710,"infectionDiffY":1.94521,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"050_049","label":"SNPs","pAvg":0.02663,"pSD":0.00552,"pScaled":0.01744,"pRank":11,"nSamples":50,"individualID.1":50,"individualID.2":49,"transmission":false,"snpDist":10,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1992-06-24 10:11:40","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1995-02-13 03:09:14","sampleDiff":145,"infectionDiff":328,"infectionDiffY":0.89863,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"050_051","label":"SNPs","pAvg":0.01661,"pSD":0.00464,"pScaled":0.00787,"pRank":27,"nSamples":50,"individualID.1":50,"individualID.2":51,"transmission":false,"snpDist":4,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-86,"infectionDiff":967,"infectionDiffY":2.64932,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"050_052","label":"SNPs","pAvg":0.00193,"pSD":0.0005,"pScaled":0.00072,"pRank":58,"nSamples":50,"individualID.1":50,"individualID.2":52,"transmission":false,"snpDist":5,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1747,"infectionDiff":1995,"infectionDiffY":5.46575,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"050_053","label":"SNPs","pAvg":0.0037,"pSD":0.00151,"pScaled":0.00247,"pRank":35,"nSamples":50,"individualID.1":50,"individualID.2":53,"transmission":false,"snpDist":7,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":434,"infectionDiff":1459,"infectionDiffY":3.99726,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"050_054","label":"SNPs","pAvg":0.00326,"pSD":0.00093,"pScaled":0.00085,"pRank":58,"nSamples":50,"individualID.1":50,"individualID.2":54,"transmission":false,"snpDist":7,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1606,"infectionDiff":2384,"infectionDiffY":6.53151,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"050_055","label":"SNPs","pAvg":0.00434,"pSD":0.00185,"pScaled":0.00133,"pRank":39,"nSamples":50,"individualID.1":50,"individualID.2":55,"transmission":false,"snpDist":7,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":589,"infectionDiff":1651,"infectionDiffY":4.52329,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"050_056","label":"SNPs","pAvg":0.00185,"pSD":0.00087,"pScaled":0.00044,"pRank":47,"nSamples":50,"individualID.1":50,"individualID.2":56,"transmission":false,"snpDist":7,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":1013,"infectionDiff":1736,"infectionDiffY":4.75616,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"050_057","label":"SNPs","pAvg":0.00195,"pSD":0.00055,"pScaled":0.00039,"pRank":51,"nSamples":50,"individualID.1":50,"individualID.2":57,"transmission":false,"snpDist":8,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1576,"infectionDiff":2386,"infectionDiffY":6.53699,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"050_058","label":"SNPs","pAvg":0.00187,"pSD":0.00052,"pScaled":0.00184,"pRank":51,"nSamples":500,"individualID.1":50,"individualID.2":58,"transmission":false,"snpDist":9,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1861,"infectionDiff":2074,"infectionDiffY":5.68219,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"050_059","label":"SNPs","pAvg":0.02565,"pSD":0.00637,"pScaled":0.03688,"pRank":12,"nSamples":500,"individualID.1":50,"individualID.2":59,"transmission":false,"snpDist":9,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1993-01-21 00:49:13","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1998-02-12 01:37:33","sampleDiff":1240,"infectionDiff":538,"infectionDiffY":1.47397,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"050_060","label":"SNPs","pAvg":0.00473,"pSD":0.00117,"pScaled":0.00229,"pRank":55,"nSamples":50,"individualID.1":50,"individualID.2":60,"transmission":false,"snpDist":7,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1902,"infectionDiff":2716,"infectionDiffY":7.4411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"050_061","label":"SNPs","pAvg":0.00362,"pSD":0.00098,"pScaled":0.00687,"pRank":33,"nSamples":500,"individualID.1":50,"individualID.2":61,"transmission":false,"snpDist":6,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1695,"infectionDiff":1934,"infectionDiffY":5.29863,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"050_062","label":"SNPs","pAvg":0.01855,"pSD":0.00499,"pScaled":0.00491,"pRank":21,"nSamples":50,"individualID.1":50,"individualID.2":62,"transmission":false,"snpDist":9,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":430,"infectionDiff":839,"infectionDiffY":2.29863,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"050_063","label":"SNPs","pAvg":0.04074,"pSD":0.00995,"pScaled":0.0196,"pRank":5,"nSamples":50,"individualID.1":50,"individualID.2":63,"transmission":false,"snpDist":10,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":-138,"infectionDiff":633,"infectionDiffY":1.73425,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"050_064","label":"SNPs","pAvg":0.00331,"pSD":0.00168,"pScaled":0.00126,"pRank":33,"nSamples":50,"individualID.1":50,"individualID.2":64,"transmission":false,"snpDist":8,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":645,"infectionDiff":1615,"infectionDiffY":4.42466,"timeCat":"5","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"050_065","label":"SNPs","pAvg":0.00188,"pSD":0.00088,"pScaled":0.00145,"pRank":36,"nSamples":50,"individualID.1":50,"individualID.2":65,"transmission":false,"snpDist":7,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":653,"infectionDiff":1548,"infectionDiffY":4.2411,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"050_066","label":"SNPs","pAvg":0.00473,"pSD":0.00208,"pScaled":0.00125,"pRank":35,"nSamples":50,"individualID.1":50,"individualID.2":66,"transmission":false,"snpDist":8,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":800,"infectionDiff":1695,"infectionDiffY":4.64384,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"050_067","label":"SNPs","pAvg":0.0019,"pSD":0.00051,"pScaled":0.00048,"pRank":71,"nSamples":50,"individualID.1":50,"individualID.2":67,"transmission":false,"snpDist":9,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1921,"infectionDiff":2780,"infectionDiffY":7.61644,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"050_068","label":"SNPs","pAvg":0.01041,"pSD":0.00266,"pScaled":0.00228,"pRank":35,"nSamples":50,"individualID.1":50,"individualID.2":68,"transmission":false,"snpDist":4,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":1528,"infectionDiff":2432,"infectionDiffY":6.66301,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"050_069","label":"SNPs","pAvg":0.00284,"pSD":0.00077,"pScaled":0.00091,"pRank":50,"nSamples":50,"individualID.1":50,"individualID.2":69,"transmission":false,"snpDist":5,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1572,"infectionDiff":2459,"infectionDiffY":6.73699,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"050_070","label":"SNPs","pAvg":0.01777,"pSD":0.00613,"pScaled":0.0055,"pRank":21,"nSamples":50,"individualID.1":50,"individualID.2":70,"transmission":false,"snpDist":10,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":109,"infectionDiff":876,"infectionDiffY":2.4,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"050_071","label":"SNPs","pAvg":0.0011,"pSD":0.00347,"pScaled":0.00112,"pRank":40,"nSamples":500,"individualID.1":50,"individualID.2":71,"transmission":false,"snpDist":14,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":1627,"infectionDiff":1135,"infectionDiffY":3.10959,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"050_072","label":"SNPs","pAvg":0.02573,"pSD":0.00832,"pScaled":0.00783,"pRank":13,"nSamples":50,"individualID.1":50,"individualID.2":72,"transmission":false,"snpDist":10,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":68,"infectionDiff":1054,"infectionDiffY":2.88767,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"050_073","label":"SNPs","pAvg":0.00168,"pSD":0.00076,"pScaled":0.00123,"pRank":43,"nSamples":50,"individualID.1":50,"individualID.2":73,"transmission":false,"snpDist":6,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":1149,"infectionDiff":1805,"infectionDiffY":4.94521,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"050_074","label":"SNPs","pAvg":0.00736,"pSD":0.00221,"pScaled":0.00404,"pRank":11,"nSamples":50,"individualID.1":50,"individualID.2":74,"transmission":false,"snpDist":5,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":989,"infectionDiff":1185,"infectionDiffY":3.24658,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"050_075","label":"SNPs","pAvg":0.00016,"pSD":0.0005,"pScaled":0.00069,"pRank":84,"nSamples":500,"individualID.1":50,"individualID.2":75,"transmission":false,"snpDist":11,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1656,"infectionDiff":2759,"infectionDiffY":7.5589,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"050_076","label":"SNPs","pAvg":0.00148,"pSD":0.00045,"pScaled":0.00036,"pRank":73,"nSamples":50,"individualID.1":50,"individualID.2":76,"transmission":false,"snpDist":4,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1890,"infectionDiff":2432,"infectionDiffY":6.66301,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"050_077","label":"SNPs","pAvg":0.00172,"pSD":0.00047,"pScaled":0.00038,"pRank":66,"nSamples":50,"individualID.1":50,"individualID.2":77,"transmission":false,"snpDist":3,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":1043,"infectionDiff":2147,"infectionDiffY":5.88219,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"050_078","label":"SNPs","pAvg":0.00431,"pSD":0.00098,"pScaled":0.00096,"pRank":76,"nSamples":50,"individualID.1":50,"individualID.2":78,"transmission":false,"snpDist":3,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1734,"infectionDiff":2460,"infectionDiffY":6.73973,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"050_079","label":"SNPs","pAvg":0.00164,"pSD":0.0054,"pScaled":0.00082,"pRank":47,"nSamples":500,"individualID.1":50,"individualID.2":79,"transmission":false,"snpDist":12,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":1143,"infectionDiff":1744,"infectionDiffY":4.77808,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"050_080","label":"SNPs","pAvg":0.0038,"pSD":0.00185,"pScaled":0.02774,"pRank":6,"nSamples":500,"individualID.1":50,"individualID.2":80,"transmission":false,"snpDist":8,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":1151,"infectionDiff":1676,"infectionDiffY":4.59178,"timeCat":"5","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"050_081","label":"SNPs","pAvg":0.00163,"pSD":0.00054,"pScaled":0.0004,"pRank":86,"nSamples":50,"individualID.1":50,"individualID.2":81,"transmission":false,"snpDist":3,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1867,"infectionDiff":2843,"infectionDiffY":7.78904,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"050_082","label":"SNPs","pAvg":0.01005,"pSD":0.00231,"pScaled":0.00219,"pRank":34,"nSamples":50,"individualID.1":50,"individualID.2":82,"transmission":false,"snpDist":5,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1871,"infectionDiff":2920,"infectionDiffY":8,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"050_083","label":"SNPs","pAvg":0.00543,"pSD":0.00131,"pScaled":0.00211,"pRank":57,"nSamples":50,"individualID.1":50,"individualID.2":83,"transmission":false,"snpDist":5,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1647,"infectionDiff":2390,"infectionDiffY":6.54795,"timeCat":"6","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"050_084","label":"SNPs","pAvg":0.00165,"pSD":0.00515,"pScaled":0.00083,"pRank":32,"nSamples":500,"individualID.1":50,"individualID.2":84,"transmission":false,"snpDist":14,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1890,"infectionDiff":2438,"infectionDiffY":6.67945,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"050_085","label":"SNPs","pAvg":0.00142,"pSD":0.00442,"pScaled":0.00049,"pRank":37,"nSamples":500,"individualID.1":50,"individualID.2":85,"transmission":false,"snpDist":12,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":1002,"infectionDiff":2103,"infectionDiffY":5.76164,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"050_086","label":"SNPs","pAvg":0.00285,"pSD":0.00146,"pScaled":0.00091,"pRank":35,"nSamples":50,"individualID.1":50,"individualID.2":86,"transmission":false,"snpDist":5,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":840,"infectionDiff":1731,"infectionDiffY":4.74247,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"050_087","label":"SNPs","pAvg":0.00417,"pSD":0.00124,"pScaled":0.0034,"pRank":20,"nSamples":50,"individualID.1":50,"individualID.2":87,"transmission":false,"snpDist":9,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":1375,"infectionDiff":2270,"infectionDiffY":6.21918,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"050_088","label":"SNPs","pAvg":0.00446,"pSD":0.00093,"pScaled":0.00086,"pRank":67,"nSamples":50,"individualID.1":50,"individualID.2":88,"transmission":false,"snpDist":4,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":1485,"infectionDiff":2605,"infectionDiffY":7.13699,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"050_089","label":"SNPs","pAvg":0.00144,"pSD":0.00445,"pScaled":0.00046,"pRank":43,"nSamples":500,"individualID.1":50,"individualID.2":89,"transmission":false,"snpDist":13,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1776,"infectionDiff":2441,"infectionDiffY":6.68767,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"050_090","label":"SNPs","pAvg":0.00147,"pSD":0.00452,"pScaled":0.00038,"pRank":60,"nSamples":500,"individualID.1":50,"individualID.2":90,"transmission":false,"snpDist":14,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1847,"infectionDiff":2668,"infectionDiffY":7.30959,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"050_091","label":"SNPs","pAvg":0.00084,"pSD":0.00258,"pScaled":0.00042,"pRank":53,"nSamples":500,"individualID.1":50,"individualID.2":91,"transmission":false,"snpDist":13,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1868,"infectionDiff":2259,"infectionDiffY":6.18904,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"050_092","label":"SNPs","pAvg":0.00163,"pSD":0.00503,"pScaled":0.00066,"pRank":34,"nSamples":500,"individualID.1":50,"individualID.2":92,"transmission":false,"snpDist":13,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1915,"infectionDiff":2410,"infectionDiffY":6.60274,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"050_093","label":"SNPs","pAvg":0.00152,"pSD":0.00471,"pScaled":0.00041,"pRank":46,"nSamples":500,"individualID.1":50,"individualID.2":93,"transmission":false,"snpDist":14,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1752,"infectionDiff":2636,"infectionDiffY":7.22192,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"1","snpClose":false} {"pairID":"050_094","label":"SNPs","pAvg":0.00201,"pSD":0.00053,"pScaled":0.00066,"pRank":55,"nSamples":50,"individualID.1":50,"individualID.2":94,"transmission":false,"snpDist":9,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1798,"infectionDiff":2907,"infectionDiffY":7.96438,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"050_095","label":"SNPs","pAvg":0.00414,"pSD":0.00113,"pScaled":0.00211,"pRank":20,"nSamples":50,"individualID.1":50,"individualID.2":95,"transmission":false,"snpDist":9,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":1380,"infectionDiff":2339,"infectionDiffY":6.40822,"timeCat":"6","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"050_096","label":"SNPs","pAvg":0.00375,"pSD":0.00118,"pScaled":0.00131,"pRank":37,"nSamples":50,"individualID.1":50,"individualID.2":96,"transmission":false,"snpDist":9,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":1475,"infectionDiff":2571,"infectionDiffY":7.04384,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"050_097","label":"SNPs","pAvg":0.00089,"pSD":0.00273,"pScaled":0.0002,"pRank":81,"nSamples":500,"individualID.1":50,"individualID.2":97,"transmission":false,"snpDist":13,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1718,"infectionDiff":2727,"infectionDiffY":7.47123,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"050_098","label":"SNPs","pAvg":0.00074,"pSD":0.00229,"pScaled":0.00021,"pRank":67,"nSamples":500,"individualID.1":50,"individualID.2":98,"transmission":false,"snpDist":13,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":1537,"infectionDiff":2500,"infectionDiffY":6.84932,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"050_099","label":"SNPs","pAvg":0.00178,"pSD":0.00053,"pScaled":0.00061,"pRank":46,"nSamples":50,"individualID.1":50,"individualID.2":99,"transmission":false,"snpDist":6,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":1520,"infectionDiff":2364,"infectionDiffY":6.47671,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"050_100","label":"SNPs","pAvg":0.00198,"pSD":0.00058,"pScaled":0.00058,"pRank":76,"nSamples":50,"individualID.1":50,"individualID.2":100,"transmission":false,"snpDist":6,"infectionDate.1":"1991-08-01 18:24:10","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1994-09-20 16:37:30","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1719,"infectionDiff":2742,"infectionDiffY":7.51233,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"051_009","label":"SNPs","pAvg":0.00507,"pSD":0.01584,"pScaled":0.02261,"pRank":15,"nSamples":500,"individualID.1":51,"individualID.2":9,"transmission":false,"snpDist":13,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":1827,"infectionDiff":41,"infectionDiffY":0.11233,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"051_023","label":"SNPs","pAvg":0.01025,"pSD":0.00437,"pScaled":0.00456,"pRank":36,"nSamples":50,"individualID.1":51,"individualID.2":23,"transmission":false,"snpDist":9,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1984,"infectionDiff":1580,"infectionDiffY":4.32877,"timeCat":"5","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"051_026","label":"SNPs","pAvg":0.01295,"pSD":0.00355,"pScaled":0.00455,"pRank":21,"nSamples":50,"individualID.1":51,"individualID.2":26,"transmission":false,"snpDist":8,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1588,"infectionDiff":877,"infectionDiffY":2.40274,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"051_027","label":"SNPs","pAvg":0.00667,"pSD":0.00351,"pScaled":0.00238,"pRank":63,"nSamples":50,"individualID.1":51,"individualID.2":27,"transmission":false,"snpDist":7,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1761,"infectionDiff":1466,"infectionDiffY":4.01644,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"051_028","label":"SNPs","pAvg":0.06847,"pSD":0.01343,"pScaled":0.01912,"pRank":5,"nSamples":50,"individualID.1":51,"individualID.2":28,"transmission":false,"snpDist":7,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":977,"infectionDiff":291,"infectionDiffY":0.79726,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"051_033","label":"SNPs","pAvg":0.0098,"pSD":0.00347,"pScaled":0.00447,"pRank":19,"nSamples":50,"individualID.1":51,"individualID.2":33,"transmission":false,"snpDist":9,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":1205,"infectionDiff":1148,"infectionDiffY":3.14521,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"051_036","label":"SNPs","pAvg":0.75068,"pSD":0.42424,"pScaled":0.20303,"pRank":2,"nSamples":194,"individualID.1":51,"individualID.2":36,"transmission":false,"snpDist":1,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":966,"infectionDiff":756,"infectionDiffY":2.07123,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":true} {"pairID":"051_037","label":"SNPs","pAvg":0.03943,"pSD":0.00857,"pScaled":0.03976,"pRank":11,"nSamples":500,"individualID.1":51,"individualID.2":37,"transmission":false,"snpDist":7,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":1353,"infectionDiff":278,"infectionDiffY":0.76164,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"051_040","label":"SNPs","pAvg":0.02462,"pSD":0.00606,"pScaled":0.02202,"pRank":17,"nSamples":500,"individualID.1":51,"individualID.2":40,"transmission":false,"snpDist":6,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":989,"infectionDiff":1012,"infectionDiffY":2.7726,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"051_045","label":"SNPs","pAvg":0.00565,"pSD":0.01778,"pScaled":0.00342,"pRank":39,"nSamples":500,"individualID.1":51,"individualID.2":45,"transmission":false,"snpDist":11,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":1362,"infectionDiff":523,"infectionDiffY":1.43288,"timeCat":"2","Z1":"1","Z2":"1","Z3":"2","Z4":"2","snpClose":false} {"pairID":"051_047","label":"SNPs","pAvg":0.10203,"pSD":0.01929,"pScaled":0.02201,"pRank":7,"nSamples":50,"individualID.1":51,"individualID.2":47,"transmission":false,"snpDist":9,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":213,"infectionDiff":208,"infectionDiffY":0.56986,"timeCat":"1","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"051_052","label":"SNPs","pAvg":0.01203,"pSD":0.00368,"pScaled":0.00451,"pRank":29,"nSamples":50,"individualID.1":51,"individualID.2":52,"transmission":false,"snpDist":3,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1833,"infectionDiff":1028,"infectionDiffY":2.81644,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"051_053","label":"SNPs","pAvg":0.02018,"pSD":0.00514,"pScaled":0.01348,"pRank":11,"nSamples":50,"individualID.1":51,"individualID.2":53,"transmission":false,"snpDist":7,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":520,"infectionDiff":492,"infectionDiffY":1.34795,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"051_054","label":"SNPs","pAvg":0.01,"pSD":0.00351,"pScaled":0.0026,"pRank":18,"nSamples":50,"individualID.1":51,"individualID.2":54,"transmission":false,"snpDist":7,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1691,"infectionDiff":1416,"infectionDiffY":3.87945,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"051_055","label":"SNPs","pAvg":0.06496,"pSD":0.01848,"pScaled":0.01995,"pRank":5,"nSamples":50,"individualID.1":51,"individualID.2":55,"transmission":false,"snpDist":7,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":675,"infectionDiff":684,"infectionDiffY":1.87397,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"051_056","label":"SNPs","pAvg":0.01266,"pSD":0.00384,"pScaled":0.00303,"pRank":21,"nSamples":50,"individualID.1":51,"individualID.2":56,"transmission":false,"snpDist":7,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":1098,"infectionDiff":769,"infectionDiffY":2.10685,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"051_057","label":"SNPs","pAvg":0.00807,"pSD":0.00282,"pScaled":0.00161,"pRank":31,"nSamples":50,"individualID.1":51,"individualID.2":57,"transmission":false,"snpDist":8,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1662,"infectionDiff":1419,"infectionDiffY":3.88767,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"051_058","label":"SNPs","pAvg":0.00838,"pSD":0.00321,"pScaled":0.00827,"pRank":35,"nSamples":500,"individualID.1":51,"individualID.2":58,"transmission":false,"snpDist":9,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1946,"infectionDiff":1107,"infectionDiffY":3.03288,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"051_060","label":"SNPs","pAvg":0.00727,"pSD":0.00314,"pScaled":0.00352,"pRank":49,"nSamples":50,"individualID.1":51,"individualID.2":60,"transmission":false,"snpDist":7,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1988,"infectionDiff":1749,"infectionDiffY":4.79178,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"051_061","label":"SNPs","pAvg":0.00467,"pSD":0.00159,"pScaled":0.00887,"pRank":22,"nSamples":500,"individualID.1":51,"individualID.2":61,"transmission":false,"snpDist":6,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1781,"infectionDiff":967,"infectionDiffY":2.64932,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"051_064","label":"SNPs","pAvg":0.03042,"pSD":0.00843,"pScaled":0.01155,"pRank":5,"nSamples":50,"individualID.1":51,"individualID.2":64,"transmission":false,"snpDist":8,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":730,"infectionDiff":648,"infectionDiffY":1.77534,"timeCat":"2","Z1":"1","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"051_065","label":"SNPs","pAvg":0.0066,"pSD":0.00208,"pScaled":0.00509,"pRank":20,"nSamples":50,"individualID.1":51,"individualID.2":65,"transmission":false,"snpDist":7,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":738,"infectionDiff":581,"infectionDiffY":1.59178,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"051_066","label":"SNPs","pAvg":0.05217,"pSD":0.01435,"pScaled":0.01378,"pRank":6,"nSamples":50,"individualID.1":51,"individualID.2":66,"transmission":false,"snpDist":8,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":885,"infectionDiff":728,"infectionDiffY":1.99452,"timeCat":"2","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"051_067","label":"SNPs","pAvg":0.00401,"pSD":0.00202,"pScaled":0.00101,"pRank":65,"nSamples":50,"individualID.1":51,"individualID.2":67,"transmission":false,"snpDist":9,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":2007,"infectionDiff":1813,"infectionDiffY":4.96712,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"051_068","label":"SNPs","pAvg":0.0099,"pSD":0.00484,"pScaled":0.00216,"pRank":36,"nSamples":50,"individualID.1":51,"individualID.2":68,"transmission":false,"snpDist":4,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":1613,"infectionDiff":1465,"infectionDiffY":4.0137,"timeCat":"5","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"051_069","label":"SNPs","pAvg":0.00154,"pSD":0.00076,"pScaled":0.00049,"pRank":64,"nSamples":50,"individualID.1":51,"individualID.2":69,"transmission":false,"snpDist":5,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1658,"infectionDiff":1492,"infectionDiffY":4.08767,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"051_071","label":"SNPs","pAvg":0.00372,"pSD":0.01163,"pScaled":0.00379,"pRank":32,"nSamples":500,"individualID.1":51,"individualID.2":71,"transmission":false,"snpDist":14,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":1713,"infectionDiff":168,"infectionDiffY":0.46027,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"051_072","label":"SNPs","pAvg":0.0506,"pSD":0.01364,"pScaled":0.0154,"pRank":7,"nSamples":50,"individualID.1":51,"individualID.2":72,"transmission":false,"snpDist":10,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":154,"infectionDiff":87,"infectionDiffY":0.23836,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"051_073","label":"SNPs","pAvg":0.90065,"pSD":0.29836,"pScaled":0.66322,"pRank":1,"nSamples":500,"individualID.1":51,"individualID.2":73,"transmission":false,"snpDist":2,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":1235,"infectionDiff":838,"infectionDiffY":2.29589,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":true} {"pairID":"051_074","label":"SNPs","pAvg":0.80691,"pSD":0.39364,"pScaled":0.44267,"pRank":2,"nSamples":257,"individualID.1":51,"individualID.2":74,"transmission":false,"snpDist":1,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":1075,"infectionDiff":218,"infectionDiffY":0.59726,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":true} {"pairID":"051_075","label":"SNPs","pAvg":0.00014,"pSD":0.00048,"pScaled":0.00062,"pRank":91,"nSamples":500,"individualID.1":51,"individualID.2":75,"transmission":false,"snpDist":11,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1741,"infectionDiff":1791,"infectionDiffY":4.90685,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"051_076","label":"SNPs","pAvg":0.009,"pSD":0.00438,"pScaled":0.00221,"pRank":38,"nSamples":50,"individualID.1":51,"individualID.2":76,"transmission":false,"snpDist":4,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1976,"infectionDiff":1465,"infectionDiffY":4.0137,"timeCat":"5","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"051_077","label":"SNPs","pAvg":0.00844,"pSD":0.00337,"pScaled":0.00187,"pRank":33,"nSamples":50,"individualID.1":51,"individualID.2":77,"transmission":false,"snpDist":3,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":1129,"infectionDiff":1180,"infectionDiffY":3.23288,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"051_078","label":"SNPs","pAvg":0.00678,"pSD":0.00311,"pScaled":0.0015,"pRank":68,"nSamples":50,"individualID.1":51,"individualID.2":78,"transmission":false,"snpDist":3,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1820,"infectionDiff":1493,"infectionDiffY":4.09041,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"051_079","label":"SNPs","pAvg":0.00137,"pSD":0.00432,"pScaled":0.00069,"pRank":51,"nSamples":500,"individualID.1":51,"individualID.2":79,"transmission":false,"snpDist":12,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":1228,"infectionDiff":777,"infectionDiffY":2.12877,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"051_080","label":"SNPs","pAvg":0.00973,"pSD":0.00287,"pScaled":0.07106,"pRank":2,"nSamples":500,"individualID.1":51,"individualID.2":80,"transmission":false,"snpDist":4,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":1237,"infectionDiff":709,"infectionDiffY":1.94247,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"051_081","label":"SNPs","pAvg":0.00236,"pSD":0.0007,"pScaled":0.00059,"pRank":68,"nSamples":50,"individualID.1":51,"individualID.2":81,"transmission":false,"snpDist":3,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1953,"infectionDiff":1876,"infectionDiffY":5.13973,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"051_082","label":"SNPs","pAvg":0.00631,"pSD":0.00204,"pScaled":0.00137,"pRank":58,"nSamples":50,"individualID.1":51,"individualID.2":82,"transmission":false,"snpDist":5,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1957,"infectionDiff":1953,"infectionDiffY":5.35068,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"051_083","label":"SNPs","pAvg":0.02298,"pSD":0.00733,"pScaled":0.00894,"pRank":15,"nSamples":50,"individualID.1":51,"individualID.2":83,"transmission":false,"snpDist":5,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1733,"infectionDiff":1423,"infectionDiffY":3.89863,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"051_084","label":"SNPs","pAvg":0.00037,"pSD":0.00124,"pScaled":0.00019,"pRank":69,"nSamples":500,"individualID.1":51,"individualID.2":84,"transmission":false,"snpDist":14,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1976,"infectionDiff":1471,"infectionDiffY":4.03014,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"051_085","label":"SNPs","pAvg":0.00098,"pSD":0.00309,"pScaled":0.00033,"pRank":44,"nSamples":500,"individualID.1":51,"individualID.2":85,"transmission":false,"snpDist":12,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":1088,"infectionDiff":1136,"infectionDiffY":3.11233,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"051_086","label":"SNPs","pAvg":0.73101,"pSD":0.4432,"pScaled":0.23283,"pRank":1,"nSamples":185,"individualID.1":51,"individualID.2":86,"transmission":false,"snpDist":1,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":926,"infectionDiff":764,"infectionDiffY":2.09315,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":true} {"pairID":"051_087","label":"SNPs","pAvg":0.00468,"pSD":0.00183,"pScaled":0.00382,"pRank":17,"nSamples":50,"individualID.1":51,"individualID.2":87,"transmission":false,"snpDist":5,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":1461,"infectionDiff":1303,"infectionDiffY":3.56986,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"051_088","label":"SNPs","pAvg":0.00747,"pSD":0.00338,"pScaled":0.00145,"pRank":48,"nSamples":50,"individualID.1":51,"individualID.2":88,"transmission":false,"snpDist":4,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":1570,"infectionDiff":1638,"infectionDiffY":4.48767,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"051_089","label":"SNPs","pAvg":0.00046,"pSD":0.00152,"pScaled":0.00015,"pRank":70,"nSamples":500,"individualID.1":51,"individualID.2":89,"transmission":false,"snpDist":13,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1862,"infectionDiff":1474,"infectionDiffY":4.03836,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"051_090","label":"SNPs","pAvg":0.00046,"pSD":0.00153,"pScaled":0.00012,"pRank":82,"nSamples":500,"individualID.1":51,"individualID.2":90,"transmission":false,"snpDist":14,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1933,"infectionDiff":1701,"infectionDiffY":4.66027,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"051_091","label":"SNPs","pAvg":0.00172,"pSD":0.00545,"pScaled":0.00086,"pRank":42,"nSamples":500,"individualID.1":51,"individualID.2":91,"transmission":false,"snpDist":13,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1954,"infectionDiff":1292,"infectionDiffY":3.53973,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"051_092","label":"SNPs","pAvg":0.00089,"pSD":0.00284,"pScaled":0.00036,"pRank":46,"nSamples":500,"individualID.1":51,"individualID.2":92,"transmission":false,"snpDist":13,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":2001,"infectionDiff":1443,"infectionDiffY":3.95342,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"051_093","label":"SNPs","pAvg":0.00072,"pSD":0.00237,"pScaled":0.0002,"pRank":61,"nSamples":500,"individualID.1":51,"individualID.2":93,"transmission":false,"snpDist":14,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1838,"infectionDiff":1669,"infectionDiffY":4.5726,"timeCat":"5","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"051_094","label":"SNPs","pAvg":0.00142,"pSD":0.00044,"pScaled":0.00047,"pRank":69,"nSamples":50,"individualID.1":51,"individualID.2":94,"transmission":false,"snpDist":5,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1884,"infectionDiff":1940,"infectionDiffY":5.31507,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"051_095","label":"SNPs","pAvg":0.00473,"pSD":0.00207,"pScaled":0.00241,"pRank":18,"nSamples":50,"individualID.1":51,"individualID.2":95,"transmission":false,"snpDist":5,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":1466,"infectionDiff":1372,"infectionDiffY":3.7589,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"051_096","label":"SNPs","pAvg":0.00145,"pSD":0.00075,"pScaled":0.00051,"pRank":65,"nSamples":50,"individualID.1":51,"individualID.2":96,"transmission":false,"snpDist":5,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":1561,"infectionDiff":1604,"infectionDiffY":4.39452,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"051_097","label":"SNPs","pAvg":0.00076,"pSD":0.00254,"pScaled":0.00017,"pRank":84,"nSamples":500,"individualID.1":51,"individualID.2":97,"transmission":false,"snpDist":13,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1804,"infectionDiff":1760,"infectionDiffY":4.82192,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"051_098","label":"SNPs","pAvg":0.00043,"pSD":0.00142,"pScaled":0.00012,"pRank":75,"nSamples":500,"individualID.1":51,"individualID.2":98,"transmission":false,"snpDist":13,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":1623,"infectionDiff":1533,"infectionDiffY":4.2,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"051_099","label":"SNPs","pAvg":0.79132,"pSD":0.40657,"pScaled":0.27034,"pRank":1,"nSamples":239,"individualID.1":51,"individualID.2":99,"transmission":false,"snpDist":2,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":1606,"infectionDiff":1397,"infectionDiffY":3.8274,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":true} {"pairID":"051_100","label":"SNPs","pAvg":0.78396,"pSD":0.4108,"pScaled":0.23102,"pRank":1,"nSamples":230,"individualID.1":51,"individualID.2":100,"transmission":false,"snpDist":2,"infectionDate.1":"1994-03-25 21:23:15","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1994-06-26 22:12:17","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1805,"infectionDiff":1775,"infectionDiffY":4.86301,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":true} {"pairID":"052_023","label":"SNPs","pAvg":0.04486,"pSD":0.00975,"pScaled":0.01997,"pRank":8,"nSamples":50,"individualID.1":52,"individualID.2":23,"transmission":false,"snpDist":10,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":151,"infectionDiff":552,"infectionDiffY":1.51233,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"052_027","label":"SNPs","pAvg":0.04493,"pSD":0.01265,"pScaled":0.01604,"pRank":8,"nSamples":50,"individualID.1":52,"individualID.2":27,"transmission":false,"snpDist":8,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":-72,"infectionDiff":438,"infectionDiffY":1.2,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"052_033","label":"SNPs","pAvg":0.04568,"pSD":0.00924,"pScaled":0.02083,"pRank":3,"nSamples":50,"individualID.1":52,"individualID.2":33,"transmission":false,"snpDist":10,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":-628,"infectionDiff":120,"infectionDiffY":0.32877,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"052_054","label":"SNPs","pAvg":0.03439,"pSD":0.00822,"pScaled":0.00895,"pRank":10,"nSamples":50,"individualID.1":52,"individualID.2":54,"transmission":false,"snpDist":8,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":-141,"infectionDiff":389,"infectionDiffY":1.06575,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"052_057","label":"SNPs","pAvg":0.0781,"pSD":0.01795,"pScaled":0.01562,"pRank":10,"nSamples":50,"individualID.1":52,"individualID.2":57,"transmission":false,"snpDist":9,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":-171,"infectionDiff":391,"infectionDiffY":1.07123,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"052_058","label":"SNPs","pAvg":0.09407,"pSD":0.01546,"pScaled":0.09283,"pRank":1,"nSamples":500,"individualID.1":52,"individualID.2":58,"transmission":false,"snpDist":10,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":114,"infectionDiff":79,"infectionDiffY":0.21644,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"052_060","label":"SNPs","pAvg":0.04182,"pSD":0.00863,"pScaled":0.02027,"pRank":7,"nSamples":50,"individualID.1":52,"individualID.2":60,"transmission":false,"snpDist":8,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":155,"infectionDiff":721,"infectionDiffY":1.97534,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"052_067","label":"SNPs","pAvg":0.05518,"pSD":0.01636,"pScaled":0.01392,"pRank":7,"nSamples":50,"individualID.1":52,"individualID.2":67,"transmission":false,"snpDist":10,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":174,"infectionDiff":785,"infectionDiffY":2.15068,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"052_068","label":"SNPs","pAvg":0.0257,"pSD":0.00632,"pScaled":0.00561,"pRank":19,"nSamples":50,"individualID.1":52,"individualID.2":68,"transmission":false,"snpDist":5,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":-219,"infectionDiff":437,"infectionDiffY":1.19726,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"052_069","label":"SNPs","pAvg":0.02116,"pSD":0.00423,"pScaled":0.00679,"pRank":16,"nSamples":50,"individualID.1":52,"individualID.2":69,"transmission":false,"snpDist":6,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":-175,"infectionDiff":464,"infectionDiffY":1.27123,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"052_075","label":"SNPs","pAvg":0.00106,"pSD":0.00337,"pScaled":0.00459,"pRank":35,"nSamples":500,"individualID.1":52,"individualID.2":75,"transmission":false,"snpDist":12,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-91,"infectionDiff":764,"infectionDiffY":2.09315,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"052_076","label":"SNPs","pAvg":0.03589,"pSD":0.00916,"pScaled":0.0088,"pRank":10,"nSamples":50,"individualID.1":52,"individualID.2":76,"transmission":false,"snpDist":5,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":143,"infectionDiff":437,"infectionDiffY":1.19726,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"052_077","label":"SNPs","pAvg":0.05254,"pSD":0.00922,"pScaled":0.01162,"pRank":8,"nSamples":50,"individualID.1":52,"individualID.2":77,"transmission":false,"snpDist":4,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":-704,"infectionDiff":152,"infectionDiffY":0.41644,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"052_078","label":"SNPs","pAvg":0.04126,"pSD":0.0085,"pScaled":0.00914,"pRank":11,"nSamples":50,"individualID.1":52,"individualID.2":78,"transmission":false,"snpDist":4,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":-13,"infectionDiff":465,"infectionDiffY":1.27397,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"052_081","label":"SNPs","pAvg":0.01139,"pSD":0.00409,"pScaled":0.00284,"pRank":17,"nSamples":50,"individualID.1":52,"individualID.2":81,"transmission":false,"snpDist":4,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":120,"infectionDiff":848,"infectionDiffY":2.32329,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"052_082","label":"SNPs","pAvg":0.01804,"pSD":0.00622,"pScaled":0.00393,"pRank":20,"nSamples":50,"individualID.1":52,"individualID.2":82,"transmission":false,"snpDist":6,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":124,"infectionDiff":925,"infectionDiffY":2.53425,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"052_083","label":"SNPs","pAvg":0.02642,"pSD":0.00613,"pScaled":0.01028,"pRank":10,"nSamples":50,"individualID.1":52,"individualID.2":83,"transmission":false,"snpDist":6,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":-100,"infectionDiff":395,"infectionDiffY":1.08219,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"052_084","label":"SNPs","pAvg":0.00089,"pSD":0.00275,"pScaled":0.00045,"pRank":46,"nSamples":500,"individualID.1":52,"individualID.2":84,"transmission":false,"snpDist":15,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":143,"infectionDiff":443,"infectionDiffY":1.2137,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"052_085","label":"SNPs","pAvg":0.00094,"pSD":0.00292,"pScaled":0.00032,"pRank":45,"nSamples":500,"individualID.1":52,"individualID.2":85,"transmission":false,"snpDist":13,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":-745,"infectionDiff":108,"infectionDiffY":0.29589,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"052_087","label":"SNPs","pAvg":0.03446,"pSD":0.0083,"pScaled":0.02812,"pRank":3,"nSamples":50,"individualID.1":52,"individualID.2":87,"transmission":false,"snpDist":8,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":-372,"infectionDiff":275,"infectionDiffY":0.75342,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"052_088","label":"SNPs","pAvg":0.02117,"pSD":0.00455,"pScaled":0.0041,"pRank":19,"nSamples":50,"individualID.1":52,"individualID.2":88,"transmission":false,"snpDist":5,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-262,"infectionDiff":610,"infectionDiffY":1.67123,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"052_089","label":"SNPs","pAvg":0.00078,"pSD":0.00243,"pScaled":0.00025,"pRank":53,"nSamples":500,"individualID.1":52,"individualID.2":89,"transmission":false,"snpDist":14,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":29,"infectionDiff":447,"infectionDiffY":1.22466,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"052_090","label":"SNPs","pAvg":0.00077,"pSD":0.00238,"pScaled":0.0002,"pRank":71,"nSamples":500,"individualID.1":52,"individualID.2":90,"transmission":false,"snpDist":15,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":100,"infectionDiff":673,"infectionDiffY":1.84384,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"052_091","label":"SNPs","pAvg":0.0026,"pSD":0.00799,"pScaled":0.0013,"pRank":34,"nSamples":500,"individualID.1":52,"individualID.2":91,"transmission":false,"snpDist":14,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":121,"infectionDiff":264,"infectionDiffY":0.72329,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"052_092","label":"SNPs","pAvg":0.00086,"pSD":0.00269,"pScaled":0.00035,"pRank":48,"nSamples":500,"individualID.1":52,"individualID.2":92,"transmission":false,"snpDist":14,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":168,"infectionDiff":415,"infectionDiffY":1.13699,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"052_093","label":"SNPs","pAvg":0.00084,"pSD":0.00258,"pScaled":0.00023,"pRank":54,"nSamples":500,"individualID.1":52,"individualID.2":93,"transmission":false,"snpDist":15,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":5,"infectionDiff":641,"infectionDiffY":1.75616,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"052_094","label":"SNPs","pAvg":0.03592,"pSD":0.01071,"pScaled":0.01184,"pRank":7,"nSamples":50,"individualID.1":52,"individualID.2":94,"transmission":false,"snpDist":8,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":51,"infectionDiff":912,"infectionDiffY":2.49863,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"052_095","label":"SNPs","pAvg":0.03453,"pSD":0.00792,"pScaled":0.01757,"pRank":4,"nSamples":50,"individualID.1":52,"individualID.2":95,"transmission":false,"snpDist":8,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":-367,"infectionDiff":344,"infectionDiffY":0.94247,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"052_096","label":"SNPs","pAvg":0.02438,"pSD":0.00611,"pScaled":0.00854,"pRank":10,"nSamples":50,"individualID.1":52,"individualID.2":96,"transmission":false,"snpDist":8,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-272,"infectionDiff":576,"infectionDiffY":1.57808,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"052_097","label":"SNPs","pAvg":0.00159,"pSD":0.00502,"pScaled":0.00036,"pRank":69,"nSamples":500,"individualID.1":52,"individualID.2":97,"transmission":false,"snpDist":14,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":-29,"infectionDiff":733,"infectionDiffY":2.00822,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"052_098","label":"SNPs","pAvg":0.00153,"pSD":0.00482,"pScaled":0.00043,"pRank":43,"nSamples":500,"individualID.1":52,"individualID.2":98,"transmission":false,"snpDist":14,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":-210,"infectionDiff":505,"infectionDiffY":1.38356,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"052_099","label":"SNPs","pAvg":0.04751,"pSD":0.01303,"pScaled":0.01623,"pRank":5,"nSamples":50,"individualID.1":52,"individualID.2":99,"transmission":false,"snpDist":5,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":-227,"infectionDiff":369,"infectionDiffY":1.01096,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"052_100","label":"SNPs","pAvg":0.02989,"pSD":0.009,"pScaled":0.00881,"pRank":11,"nSamples":50,"individualID.1":52,"individualID.2":100,"transmission":false,"snpDist":5,"infectionDate.1":"1997-01-16 15:24:25","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-07-03 14:35:56","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":-28,"infectionDiff":747,"infectionDiffY":2.04658,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"053_023","label":"SNPs","pAvg":0.00394,"pSD":0.01235,"pScaled":0.00175,"pRank":62,"nSamples":500,"individualID.1":53,"individualID.2":23,"transmission":false,"snpDist":12,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1464,"infectionDiff":1088,"infectionDiffY":2.98082,"timeCat":"3","Z1":"1","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"053_026","label":"SNPs","pAvg":0.00668,"pSD":0.02048,"pScaled":0.00235,"pRank":38,"nSamples":500,"individualID.1":53,"individualID.2":26,"transmission":false,"snpDist":11,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1068,"infectionDiff":384,"infectionDiffY":1.05205,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"053_027","label":"SNPs","pAvg":0.02991,"pSD":0.00812,"pScaled":0.01068,"pRank":12,"nSamples":50,"individualID.1":53,"individualID.2":27,"transmission":false,"snpDist":10,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1240,"infectionDiff":974,"infectionDiffY":2.66849,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"053_033","label":"SNPs","pAvg":0.00399,"pSD":0.01232,"pScaled":0.00182,"pRank":48,"nSamples":500,"individualID.1":53,"individualID.2":33,"transmission":false,"snpDist":13,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":685,"infectionDiff":656,"infectionDiffY":1.79726,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"053_036","label":"SNPs","pAvg":0.05474,"pSD":0.01127,"pScaled":0.0148,"pRank":9,"nSamples":50,"individualID.1":53,"individualID.2":36,"transmission":false,"snpDist":6,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":446,"infectionDiff":263,"infectionDiffY":0.72055,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"053_040","label":"SNPs","pAvg":0.04616,"pSD":0.01291,"pScaled":0.04129,"pRank":8,"nSamples":500,"individualID.1":53,"individualID.2":40,"transmission":false,"snpDist":7,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":468,"infectionDiff":519,"infectionDiffY":1.42192,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"053_045","label":"SNPs","pAvg":0.00569,"pSD":0.01743,"pScaled":0.00344,"pRank":38,"nSamples":500,"individualID.1":53,"individualID.2":45,"transmission":false,"snpDist":13,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":842,"infectionDiff":30,"infectionDiffY":0.08219,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"053_052","label":"SNPs","pAvg":0.06774,"pSD":0.01496,"pScaled":0.02541,"pRank":5,"nSamples":50,"individualID.1":53,"individualID.2":52,"transmission":false,"snpDist":8,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1312,"infectionDiff":535,"infectionDiffY":1.46575,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"053_054","label":"SNPs","pAvg":0.7089,"pSD":0.44666,"pScaled":0.18459,"pRank":1,"nSamples":167,"individualID.1":53,"individualID.2":54,"transmission":false,"snpDist":0,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1171,"infectionDiff":924,"infectionDiffY":2.53151,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"053_055","label":"SNPs","pAvg":0.53341,"pSD":0.48726,"pScaled":0.16383,"pRank":4,"nSamples":104,"individualID.1":53,"individualID.2":55,"transmission":false,"snpDist":0,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":154,"infectionDiff":192,"infectionDiffY":0.52603,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"053_056","label":"SNPs","pAvg":0.67211,"pSD":0.44156,"pScaled":0.1606,"pRank":3,"nSamples":140,"individualID.1":53,"individualID.2":56,"transmission":false,"snpDist":0,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":578,"infectionDiff":276,"infectionDiffY":0.75616,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"053_057","label":"SNPs","pAvg":0.57901,"pSD":0.47476,"pScaled":0.11578,"pRank":2,"nSamples":113,"individualID.1":53,"individualID.2":57,"transmission":false,"snpDist":1,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1141,"infectionDiff":926,"infectionDiffY":2.53699,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"053_058","label":"SNPs","pAvg":0.06538,"pSD":0.0147,"pScaled":0.06452,"pRank":3,"nSamples":500,"individualID.1":53,"individualID.2":58,"transmission":false,"snpDist":4,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1426,"infectionDiff":615,"infectionDiffY":1.68493,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"053_060","label":"SNPs","pAvg":0.02144,"pSD":0.00569,"pScaled":0.01039,"pRank":18,"nSamples":50,"individualID.1":53,"individualID.2":60,"transmission":false,"snpDist":8,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1468,"infectionDiff":1257,"infectionDiffY":3.44384,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"053_061","label":"SNPs","pAvg":0.02078,"pSD":0.00446,"pScaled":0.03945,"pRank":8,"nSamples":500,"individualID.1":53,"individualID.2":61,"transmission":false,"snpDist":7,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1261,"infectionDiff":475,"infectionDiffY":1.30137,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"053_064","label":"SNPs","pAvg":0.75617,"pSD":0.4149,"pScaled":0.28716,"pRank":2,"nSamples":194,"individualID.1":53,"individualID.2":64,"transmission":true,"snpDist":1,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":210,"infectionDiff":156,"infectionDiffY":0.4274,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":true} {"pairID":"053_065","label":"SNPs","pAvg":0.90474,"pSD":0.28608,"pScaled":0.69813,"pRank":1,"nSamples":500,"individualID.1":53,"individualID.2":65,"transmission":true,"snpDist":0,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":218,"infectionDiff":89,"infectionDiffY":0.24384,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"053_066","label":"SNPs","pAvg":0.61489,"pSD":0.46412,"pScaled":0.16237,"pRank":4,"nSamples":122,"individualID.1":53,"individualID.2":66,"transmission":true,"snpDist":1,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":365,"infectionDiff":235,"infectionDiffY":0.64384,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"2","snpClose":true} {"pairID":"053_067","label":"SNPs","pAvg":0.77078,"pSD":0.41359,"pScaled":0.1945,"pRank":1,"nSamples":212,"individualID.1":53,"individualID.2":67,"transmission":false,"snpDist":2,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1487,"infectionDiff":1321,"infectionDiffY":3.61918,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"053_068","label":"SNPs","pAvg":0.01633,"pSD":0.00415,"pScaled":0.00357,"pRank":26,"nSamples":50,"individualID.1":53,"individualID.2":68,"transmission":false,"snpDist":5,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":1093,"infectionDiff":973,"infectionDiffY":2.66575,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"053_069","label":"SNPs","pAvg":0.01797,"pSD":0.00565,"pScaled":0.00576,"pRank":20,"nSamples":50,"individualID.1":53,"individualID.2":69,"transmission":false,"snpDist":6,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1138,"infectionDiff":999,"infectionDiffY":2.73699,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"053_073","label":"SNPs","pAvg":0.02348,"pSD":0.00663,"pScaled":0.01729,"pRank":6,"nSamples":50,"individualID.1":53,"individualID.2":73,"transmission":false,"snpDist":9,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":715,"infectionDiff":346,"infectionDiffY":0.94795,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"053_075","label":"SNPs","pAvg":0.0077,"pSD":0.00227,"pScaled":0.03342,"pRank":12,"nSamples":500,"individualID.1":53,"individualID.2":75,"transmission":false,"snpDist":4,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1221,"infectionDiff":1299,"infectionDiffY":3.5589,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"053_076","label":"SNPs","pAvg":0.02934,"pSD":0.0096,"pScaled":0.00719,"pRank":14,"nSamples":50,"individualID.1":53,"individualID.2":76,"transmission":false,"snpDist":5,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1456,"infectionDiff":973,"infectionDiffY":2.66575,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"053_077","label":"SNPs","pAvg":0.03468,"pSD":0.00837,"pScaled":0.00767,"pRank":13,"nSamples":50,"individualID.1":53,"individualID.2":77,"transmission":false,"snpDist":4,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":609,"infectionDiff":688,"infectionDiffY":1.88493,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"053_078","label":"SNPs","pAvg":0.03468,"pSD":0.01076,"pScaled":0.00768,"pRank":16,"nSamples":50,"individualID.1":53,"individualID.2":78,"transmission":false,"snpDist":4,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1300,"infectionDiff":1001,"infectionDiffY":2.74247,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"053_079","label":"SNPs","pAvg":0.00097,"pSD":0.00299,"pScaled":0.00049,"pRank":53,"nSamples":500,"individualID.1":53,"individualID.2":79,"transmission":false,"snpDist":15,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":708,"infectionDiff":284,"infectionDiffY":0.77808,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"053_080","label":"SNPs","pAvg":0.00108,"pSD":0.00334,"pScaled":0.00789,"pRank":27,"nSamples":500,"individualID.1":53,"individualID.2":80,"transmission":false,"snpDist":11,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":717,"infectionDiff":217,"infectionDiffY":0.59452,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"053_081","label":"SNPs","pAvg":0.00801,"pSD":0.00279,"pScaled":0.002,"pRank":32,"nSamples":50,"individualID.1":53,"individualID.2":81,"transmission":false,"snpDist":4,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1433,"infectionDiff":1383,"infectionDiffY":3.78904,"timeCat":"4","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"053_082","label":"SNPs","pAvg":0.00457,"pSD":0.00188,"pScaled":0.00099,"pRank":68,"nSamples":50,"individualID.1":53,"individualID.2":82,"transmission":false,"snpDist":6,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1437,"infectionDiff":1461,"infectionDiffY":4.00274,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"053_083","label":"SNPs","pAvg":0.01627,"pSD":0.0045,"pScaled":0.00633,"pRank":19,"nSamples":50,"individualID.1":53,"individualID.2":83,"transmission":false,"snpDist":6,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1213,"infectionDiff":930,"infectionDiffY":2.54795,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"053_084","label":"SNPs","pAvg":0.00057,"pSD":0.00183,"pScaled":0.00029,"pRank":53,"nSamples":500,"individualID.1":53,"individualID.2":84,"transmission":false,"snpDist":17,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1456,"infectionDiff":978,"infectionDiffY":2.67945,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"053_085","label":"SNPs","pAvg":0.00089,"pSD":0.00275,"pScaled":0.0003,"pRank":49,"nSamples":500,"individualID.1":53,"individualID.2":85,"transmission":false,"snpDist":15,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":568,"infectionDiff":643,"infectionDiffY":1.76164,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"053_086","label":"SNPs","pAvg":0.03127,"pSD":0.00651,"pScaled":0.00996,"pRank":8,"nSamples":50,"individualID.1":53,"individualID.2":86,"transmission":false,"snpDist":8,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":406,"infectionDiff":272,"infectionDiffY":0.74521,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"053_087","label":"SNPs","pAvg":0.00177,"pSD":0.00551,"pScaled":0.00144,"pRank":38,"nSamples":500,"individualID.1":53,"individualID.2":87,"transmission":false,"snpDist":12,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":941,"infectionDiff":811,"infectionDiffY":2.22192,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"053_088","label":"SNPs","pAvg":0.01123,"pSD":0.00346,"pScaled":0.00217,"pRank":28,"nSamples":50,"individualID.1":53,"individualID.2":88,"transmission":false,"snpDist":5,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":1050,"infectionDiff":1146,"infectionDiffY":3.13973,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"053_089","label":"SNPs","pAvg":0.00068,"pSD":0.00213,"pScaled":0.00022,"pRank":57,"nSamples":500,"individualID.1":53,"individualID.2":89,"transmission":false,"snpDist":16,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1342,"infectionDiff":982,"infectionDiffY":2.69041,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"053_090","label":"SNPs","pAvg":0.00041,"pSD":0.0013,"pScaled":0.00011,"pRank":84,"nSamples":500,"individualID.1":53,"individualID.2":90,"transmission":false,"snpDist":17,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1412,"infectionDiff":1208,"infectionDiffY":3.30959,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"053_091","label":"SNPs","pAvg":0.00177,"pSD":0.00559,"pScaled":0.00089,"pRank":41,"nSamples":500,"individualID.1":53,"individualID.2":91,"transmission":false,"snpDist":16,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1434,"infectionDiff":800,"infectionDiffY":2.19178,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"053_092","label":"SNPs","pAvg":0.00055,"pSD":0.00178,"pScaled":0.00022,"pRank":55,"nSamples":500,"individualID.1":53,"individualID.2":92,"transmission":false,"snpDist":16,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1481,"infectionDiff":951,"infectionDiffY":2.60548,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"053_093","label":"SNPs","pAvg":0.00046,"pSD":0.00146,"pScaled":0.00012,"pRank":78,"nSamples":500,"individualID.1":53,"individualID.2":93,"transmission":false,"snpDist":17,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1318,"infectionDiff":1176,"infectionDiffY":3.22192,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"053_094","label":"SNPs","pAvg":0.0019,"pSD":0.00596,"pScaled":0.00063,"pRank":58,"nSamples":500,"individualID.1":53,"individualID.2":94,"transmission":false,"snpDist":12,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1364,"infectionDiff":1448,"infectionDiffY":3.96712,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"053_095","label":"SNPs","pAvg":0.00179,"pSD":0.00564,"pScaled":0.00091,"pRank":39,"nSamples":500,"individualID.1":53,"individualID.2":95,"transmission":false,"snpDist":12,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":946,"infectionDiff":880,"infectionDiffY":2.41096,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"053_096","label":"SNPs","pAvg":0.00104,"pSD":0.00329,"pScaled":0.00037,"pRank":68,"nSamples":500,"individualID.1":53,"individualID.2":96,"transmission":false,"snpDist":12,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":1041,"infectionDiff":1112,"infectionDiffY":3.04658,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"053_097","label":"SNPs","pAvg":0.00115,"pSD":0.00361,"pScaled":0.00026,"pRank":75,"nSamples":500,"individualID.1":53,"individualID.2":97,"transmission":false,"snpDist":16,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1284,"infectionDiff":1268,"infectionDiffY":3.47397,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"053_098","label":"SNPs","pAvg":0.0013,"pSD":0.0041,"pScaled":0.00037,"pRank":48,"nSamples":500,"individualID.1":53,"individualID.2":98,"transmission":false,"snpDist":16,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":1102,"infectionDiff":1041,"infectionDiffY":2.85205,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"053_099","label":"SNPs","pAvg":0.03061,"pSD":0.0087,"pScaled":0.01046,"pRank":13,"nSamples":50,"individualID.1":53,"individualID.2":99,"transmission":false,"snpDist":9,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":1085,"infectionDiff":905,"infectionDiffY":2.47945,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"053_100","label":"SNPs","pAvg":0.01644,"pSD":0.00525,"pScaled":0.00485,"pRank":27,"nSamples":50,"individualID.1":53,"individualID.2":100,"transmission":false,"snpDist":9,"infectionDate.1":"1995-07-31 03:48:58","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1995-11-29 03:55:29","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1285,"infectionDiff":1283,"infectionDiffY":3.51507,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"054_023","label":"SNPs","pAvg":0.03707,"pSD":0.00844,"pScaled":0.0165,"pRank":12,"nSamples":50,"individualID.1":54,"individualID.2":23,"transmission":false,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":292,"infectionDiff":163,"infectionDiffY":0.44658,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"054_027","label":"SNPs","pAvg":0.02758,"pSD":0.00584,"pScaled":0.00985,"pRank":13,"nSamples":50,"individualID.1":54,"individualID.2":27,"transmission":false,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":69,"infectionDiff":49,"infectionDiffY":0.13425,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"054_057","label":"SNPs","pAvg":0.44515,"pSD":0.47363,"pScaled":0.08901,"pRank":7,"nSamples":86,"individualID.1":54,"individualID.2":57,"transmission":false,"snpDist":1,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":-30,"infectionDiff":2,"infectionDiffY":0.00548,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"054_060","label":"SNPs","pAvg":0.03181,"pSD":0.00722,"pScaled":0.01541,"pRank":12,"nSamples":50,"individualID.1":54,"individualID.2":60,"transmission":false,"snpDist":8,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":296,"infectionDiff":333,"infectionDiffY":0.91233,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"054_067","label":"SNPs","pAvg":0.03427,"pSD":0.00795,"pScaled":0.00865,"pRank":14,"nSamples":50,"individualID.1":54,"individualID.2":67,"transmission":false,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":316,"infectionDiff":397,"infectionDiffY":1.08767,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"054_068","label":"SNPs","pAvg":0.05583,"pSD":0.01265,"pScaled":0.0122,"pRank":8,"nSamples":50,"individualID.1":54,"individualID.2":68,"transmission":false,"snpDist":5,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":-78,"infectionDiff":48,"infectionDiffY":0.13151,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"054_069","label":"SNPs","pAvg":0.05846,"pSD":0.01241,"pScaled":0.01874,"pRank":8,"nSamples":50,"individualID.1":54,"individualID.2":69,"transmission":false,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":-33,"infectionDiff":75,"infectionDiffY":0.20548,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"054_075","label":"SNPs","pAvg":0.00865,"pSD":0.00223,"pScaled":0.03754,"pRank":10,"nSamples":500,"individualID.1":54,"individualID.2":75,"transmission":false,"snpDist":4,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":50,"infectionDiff":375,"infectionDiffY":1.0274,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"054_076","label":"SNPs","pAvg":0.05171,"pSD":0.01,"pScaled":0.01267,"pRank":6,"nSamples":50,"individualID.1":54,"individualID.2":76,"transmission":false,"snpDist":5,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":285,"infectionDiff":48,"infectionDiffY":0.13151,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"054_078","label":"SNPs","pAvg":0.03073,"pSD":0.00616,"pScaled":0.0068,"pRank":19,"nSamples":50,"individualID.1":54,"individualID.2":78,"transmission":false,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":129,"infectionDiff":76,"infectionDiffY":0.20822,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"054_081","label":"SNPs","pAvg":0.00867,"pSD":0.00205,"pScaled":0.00216,"pRank":29,"nSamples":50,"individualID.1":54,"individualID.2":81,"transmission":false,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":262,"infectionDiff":459,"infectionDiffY":1.25753,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"054_082","label":"SNPs","pAvg":0.04147,"pSD":0.00843,"pScaled":0.00903,"pRank":11,"nSamples":50,"individualID.1":54,"individualID.2":82,"transmission":false,"snpDist":6,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":266,"infectionDiff":536,"infectionDiffY":1.46849,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"054_083","label":"SNPs","pAvg":0.02917,"pSD":0.00763,"pScaled":0.01135,"pRank":8,"nSamples":50,"individualID.1":54,"individualID.2":83,"transmission":false,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":42,"infectionDiff":6,"infectionDiffY":0.01644,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"054_084","label":"SNPs","pAvg":0.00186,"pSD":0.00574,"pScaled":0.00094,"pRank":26,"nSamples":500,"individualID.1":54,"individualID.2":84,"transmission":false,"snpDist":17,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":285,"infectionDiff":54,"infectionDiffY":0.14795,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"054_088","label":"SNPs","pAvg":0.03164,"pSD":0.00635,"pScaled":0.00612,"pRank":13,"nSamples":50,"individualID.1":54,"individualID.2":88,"transmission":false,"snpDist":5,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-121,"infectionDiff":221,"infectionDiffY":0.60548,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"054_089","label":"SNPs","pAvg":0.00216,"pSD":0.00665,"pScaled":0.00069,"pRank":27,"nSamples":500,"individualID.1":54,"individualID.2":89,"transmission":false,"snpDist":16,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":171,"infectionDiff":58,"infectionDiffY":0.1589,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"054_090","label":"SNPs","pAvg":0.02115,"pSD":0.00468,"pScaled":0.00548,"pRank":14,"nSamples":50,"individualID.1":54,"individualID.2":90,"transmission":false,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":241,"infectionDiff":284,"infectionDiffY":0.77808,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"054_092","label":"SNPs","pAvg":0.00179,"pSD":0.00552,"pScaled":0.00073,"pRank":29,"nSamples":500,"individualID.1":54,"individualID.2":92,"transmission":false,"snpDist":16,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":309,"infectionDiff":26,"infectionDiffY":0.07123,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"054_093","label":"SNPs","pAvg":0.00234,"pSD":0.00731,"pScaled":0.00064,"pRank":36,"nSamples":500,"individualID.1":54,"individualID.2":93,"transmission":false,"snpDist":17,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":147,"infectionDiff":252,"infectionDiffY":0.69041,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"054_094","label":"SNPs","pAvg":0.02083,"pSD":0.00427,"pScaled":0.00687,"pRank":12,"nSamples":50,"individualID.1":54,"individualID.2":94,"transmission":false,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":192,"infectionDiff":524,"infectionDiffY":1.43562,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"054_096","label":"SNPs","pAvg":0.05123,"pSD":0.01072,"pScaled":0.01794,"pRank":5,"nSamples":50,"individualID.1":54,"individualID.2":96,"transmission":false,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-130,"infectionDiff":187,"infectionDiffY":0.51233,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"054_097","label":"SNPs","pAvg":0.05649,"pSD":0.01083,"pScaled":0.01266,"pRank":7,"nSamples":50,"individualID.1":54,"individualID.2":97,"transmission":false,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":113,"infectionDiff":344,"infectionDiffY":0.94247,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"054_098","label":"SNPs","pAvg":0.00113,"pSD":0.00346,"pScaled":0.00032,"pRank":49,"nSamples":500,"individualID.1":54,"individualID.2":98,"transmission":false,"snpDist":16,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":-69,"infectionDiff":117,"infectionDiffY":0.32055,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"054_100","label":"SNPs","pAvg":0.04669,"pSD":0.00957,"pScaled":0.01376,"pRank":6,"nSamples":50,"individualID.1":54,"individualID.2":100,"transmission":false,"infectionDate.1":"1998-02-09 09:08:16","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-02-12 06:45:29","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":113,"infectionDiff":359,"infectionDiffY":0.98356,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"055_023","label":"SNPs","pAvg":0.00339,"pSD":0.01054,"pScaled":0.00151,"pRank":65,"nSamples":500,"individualID.1":55,"individualID.2":23,"transmission":false,"snpDist":12,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1309,"infectionDiff":896,"infectionDiffY":2.45479,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"055_026","label":"SNPs","pAvg":0.0027,"pSD":0.0083,"pScaled":0.00095,"pRank":53,"nSamples":500,"individualID.1":55,"individualID.2":26,"transmission":false,"snpDist":11,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":913,"infectionDiff":193,"infectionDiffY":0.52877,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"055_027","label":"SNPs","pAvg":0.02699,"pSD":0.00803,"pScaled":0.00964,"pRank":16,"nSamples":50,"individualID.1":55,"individualID.2":27,"transmission":false,"snpDist":10,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1086,"infectionDiff":782,"infectionDiffY":2.14247,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"055_033","label":"SNPs","pAvg":0.00242,"pSD":0.00753,"pScaled":0.0011,"pRank":56,"nSamples":500,"individualID.1":55,"individualID.2":33,"transmission":false,"snpDist":13,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":530,"infectionDiff":464,"infectionDiffY":1.27123,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"055_036","label":"SNPs","pAvg":0.04616,"pSD":0.00963,"pScaled":0.01248,"pRank":13,"nSamples":50,"individualID.1":55,"individualID.2":36,"transmission":false,"snpDist":6,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":292,"infectionDiff":72,"infectionDiffY":0.19726,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"055_040","label":"SNPs","pAvg":0.05086,"pSD":0.00964,"pScaled":0.04549,"pRank":4,"nSamples":500,"individualID.1":55,"individualID.2":40,"transmission":false,"snpDist":7,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":314,"infectionDiff":328,"infectionDiffY":0.89863,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"055_052","label":"SNPs","pAvg":0.02661,"pSD":0.00596,"pScaled":0.00998,"pRank":13,"nSamples":50,"individualID.1":55,"individualID.2":52,"transmission":false,"snpDist":8,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1158,"infectionDiff":344,"infectionDiffY":0.94247,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"055_054","label":"SNPs","pAvg":0.59703,"pSD":0.48556,"pScaled":0.15546,"pRank":5,"nSamples":122,"individualID.1":55,"individualID.2":54,"transmission":false,"snpDist":0,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1017,"infectionDiff":732,"infectionDiffY":2.00548,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"055_056","label":"SNPs","pAvg":0.67301,"pSD":0.46167,"pScaled":0.16082,"pRank":2,"nSamples":149,"individualID.1":55,"individualID.2":56,"transmission":false,"snpDist":0,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":424,"infectionDiff":84,"infectionDiffY":0.23014,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"055_057","label":"SNPs","pAvg":0.66949,"pSD":0.46665,"pScaled":0.13387,"pRank":1,"nSamples":149,"individualID.1":55,"individualID.2":57,"transmission":false,"snpDist":1,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":987,"infectionDiff":734,"infectionDiffY":2.01096,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"055_058","label":"SNPs","pAvg":0.02078,"pSD":0.00446,"pScaled":0.02051,"pRank":16,"nSamples":500,"individualID.1":55,"individualID.2":58,"transmission":false,"snpDist":4,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1272,"infectionDiff":423,"infectionDiffY":1.1589,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"055_060","label":"SNPs","pAvg":0.02701,"pSD":0.00913,"pScaled":0.01309,"pRank":16,"nSamples":50,"individualID.1":55,"individualID.2":60,"transmission":false,"snpDist":8,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1313,"infectionDiff":1065,"infectionDiffY":2.91781,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"055_061","label":"SNPs","pAvg":0.00971,"pSD":0.00227,"pScaled":0.01844,"pRank":12,"nSamples":500,"individualID.1":55,"individualID.2":61,"transmission":false,"snpDist":7,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1106,"infectionDiff":283,"infectionDiffY":0.77534,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"055_066","label":"SNPs","pAvg":0.58124,"pSD":0.47221,"pScaled":0.15349,"pRank":5,"nSamples":113,"individualID.1":55,"individualID.2":66,"transmission":false,"snpDist":1,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":211,"infectionDiff":44,"infectionDiffY":0.12055,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":true} {"pairID":"055_067","label":"SNPs","pAvg":0.62173,"pSD":0.48331,"pScaled":0.15688,"pRank":3,"nSamples":131,"individualID.1":55,"individualID.2":67,"transmission":false,"snpDist":2,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1333,"infectionDiff":1129,"infectionDiffY":3.09315,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"055_068","label":"SNPs","pAvg":0.02788,"pSD":0.00712,"pScaled":0.00609,"pRank":18,"nSamples":50,"individualID.1":55,"individualID.2":68,"transmission":false,"snpDist":5,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":939,"infectionDiff":781,"infectionDiffY":2.13973,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"055_069","label":"SNPs","pAvg":0.00599,"pSD":0.00188,"pScaled":0.00192,"pRank":27,"nSamples":50,"individualID.1":55,"individualID.2":69,"transmission":false,"snpDist":6,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":983,"infectionDiff":808,"infectionDiffY":2.2137,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"055_073","label":"SNPs","pAvg":0.01171,"pSD":0.00328,"pScaled":0.00863,"pRank":13,"nSamples":50,"individualID.1":55,"individualID.2":73,"transmission":false,"snpDist":9,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":560,"infectionDiff":154,"infectionDiffY":0.42192,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"055_075","label":"SNPs","pAvg":0.004,"pSD":0.00132,"pScaled":0.01736,"pRank":16,"nSamples":500,"individualID.1":55,"individualID.2":75,"transmission":false,"snpDist":4,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1067,"infectionDiff":1107,"infectionDiffY":3.03288,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"055_076","label":"SNPs","pAvg":0.03445,"pSD":0.01173,"pScaled":0.00844,"pRank":13,"nSamples":50,"individualID.1":55,"individualID.2":76,"transmission":false,"snpDist":5,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1302,"infectionDiff":781,"infectionDiffY":2.13973,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"055_077","label":"SNPs","pAvg":0.02063,"pSD":0.00451,"pScaled":0.00456,"pRank":20,"nSamples":50,"individualID.1":55,"individualID.2":77,"transmission":false,"snpDist":4,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":455,"infectionDiff":496,"infectionDiffY":1.3589,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"055_078","label":"SNPs","pAvg":0.02922,"pSD":0.00959,"pScaled":0.00647,"pRank":21,"nSamples":50,"individualID.1":55,"individualID.2":78,"transmission":false,"snpDist":4,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1145,"infectionDiff":809,"infectionDiffY":2.21644,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"055_079","label":"SNPs","pAvg":0.0027,"pSD":0.00831,"pScaled":0.00136,"pRank":35,"nSamples":500,"individualID.1":55,"individualID.2":79,"transmission":false,"snpDist":15,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":554,"infectionDiff":92,"infectionDiffY":0.25205,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"055_080","label":"SNPs","pAvg":0.00106,"pSD":0.00331,"pScaled":0.00777,"pRank":28,"nSamples":500,"individualID.1":55,"individualID.2":80,"transmission":false,"snpDist":11,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":563,"infectionDiff":25,"infectionDiffY":0.06849,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"055_081","label":"SNPs","pAvg":0.00396,"pSD":0.00128,"pScaled":0.00099,"pRank":48,"nSamples":50,"individualID.1":55,"individualID.2":81,"transmission":false,"snpDist":4,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1279,"infectionDiff":1191,"infectionDiffY":3.26301,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"055_082","label":"SNPs","pAvg":0.01733,"pSD":0.00605,"pScaled":0.00377,"pRank":23,"nSamples":50,"individualID.1":55,"individualID.2":82,"transmission":false,"snpDist":6,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1283,"infectionDiff":1269,"infectionDiffY":3.47671,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"055_083","label":"SNPs","pAvg":0.02743,"pSD":0.00769,"pScaled":0.01067,"pRank":9,"nSamples":50,"individualID.1":55,"individualID.2":83,"transmission":false,"snpDist":6,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1058,"infectionDiff":738,"infectionDiffY":2.02192,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"055_084","label":"SNPs","pAvg":0.0016,"pSD":0.00503,"pScaled":0.00081,"pRank":33,"nSamples":500,"individualID.1":55,"individualID.2":84,"transmission":false,"snpDist":17,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1302,"infectionDiff":786,"infectionDiffY":2.15342,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"055_085","label":"SNPs","pAvg":0.00247,"pSD":0.00771,"pScaled":0.00085,"pRank":25,"nSamples":500,"individualID.1":55,"individualID.2":85,"transmission":false,"snpDist":15,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":413,"infectionDiff":451,"infectionDiffY":1.23562,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"055_086","label":"SNPs","pAvg":0.0102,"pSD":0.00234,"pScaled":0.00325,"pRank":13,"nSamples":50,"individualID.1":55,"individualID.2":86,"transmission":false,"snpDist":8,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":251,"infectionDiff":80,"infectionDiffY":0.21918,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"055_087","label":"SNPs","pAvg":0.00086,"pSD":0.00268,"pScaled":0.0007,"pRank":43,"nSamples":500,"individualID.1":55,"individualID.2":87,"transmission":false,"snpDist":12,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":786,"infectionDiff":619,"infectionDiffY":1.69589,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"055_088","label":"SNPs","pAvg":0.03045,"pSD":0.00972,"pScaled":0.00589,"pRank":14,"nSamples":50,"individualID.1":55,"individualID.2":88,"transmission":false,"snpDist":5,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":896,"infectionDiff":954,"infectionDiffY":2.6137,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"055_089","label":"SNPs","pAvg":0.00182,"pSD":0.00575,"pScaled":0.00059,"pRank":30,"nSamples":500,"individualID.1":55,"individualID.2":89,"transmission":false,"snpDist":16,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1188,"infectionDiff":790,"infectionDiffY":2.16438,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"055_090","label":"SNPs","pAvg":0.00179,"pSD":0.00567,"pScaled":0.00046,"pRank":49,"nSamples":500,"individualID.1":55,"individualID.2":90,"transmission":false,"snpDist":17,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1258,"infectionDiff":1017,"infectionDiffY":2.7863,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"055_091","label":"SNPs","pAvg":0.00404,"pSD":0.01255,"pScaled":0.00203,"pRank":26,"nSamples":500,"individualID.1":55,"individualID.2":91,"transmission":false,"snpDist":16,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1279,"infectionDiff":608,"infectionDiffY":1.66575,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"055_092","label":"SNPs","pAvg":0.00152,"pSD":0.00477,"pScaled":0.00062,"pRank":36,"nSamples":500,"individualID.1":55,"individualID.2":92,"transmission":false,"snpDist":16,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1326,"infectionDiff":759,"infectionDiffY":2.07945,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"055_093","label":"SNPs","pAvg":0.00194,"pSD":0.00603,"pScaled":0.00053,"pRank":41,"nSamples":500,"individualID.1":55,"individualID.2":93,"transmission":false,"snpDist":17,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1163,"infectionDiff":984,"infectionDiffY":2.69589,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"055_094","label":"SNPs","pAvg":0.00036,"pSD":0.00115,"pScaled":0.00012,"pRank":91,"nSamples":500,"individualID.1":55,"individualID.2":94,"transmission":false,"snpDist":12,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1209,"infectionDiff":1256,"infectionDiffY":3.4411,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"055_095","label":"SNPs","pAvg":0.00089,"pSD":0.00273,"pScaled":0.00045,"pRank":44,"nSamples":500,"individualID.1":55,"individualID.2":95,"transmission":false,"snpDist":12,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":792,"infectionDiff":688,"infectionDiffY":1.88493,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"055_096","label":"SNPs","pAvg":0.0006,"pSD":0.0019,"pScaled":0.00021,"pRank":69,"nSamples":500,"individualID.1":55,"individualID.2":96,"transmission":false,"snpDist":12,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":886,"infectionDiff":920,"infectionDiffY":2.52055,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"055_097","label":"SNPs","pAvg":0.0031,"pSD":0.00976,"pScaled":0.00069,"pRank":62,"nSamples":500,"individualID.1":55,"individualID.2":97,"transmission":false,"snpDist":16,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1129,"infectionDiff":1076,"infectionDiffY":2.94795,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"055_098","label":"SNPs","pAvg":0.00174,"pSD":0.0055,"pScaled":0.00049,"pRank":40,"nSamples":500,"individualID.1":55,"individualID.2":98,"transmission":false,"snpDist":16,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":948,"infectionDiff":849,"infectionDiffY":2.32603,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"055_099","label":"SNPs","pAvg":0.00706,"pSD":0.00188,"pScaled":0.00241,"pRank":28,"nSamples":50,"individualID.1":55,"individualID.2":99,"transmission":false,"snpDist":9,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":931,"infectionDiff":713,"infectionDiffY":1.95342,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"055_100","label":"SNPs","pAvg":0.02874,"pSD":0.00848,"pScaled":0.00847,"pRank":14,"nSamples":50,"individualID.1":55,"individualID.2":100,"transmission":false,"snpDist":9,"infectionDate.1":"1996-02-08 01:18:52","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1996-05-01 11:28:49","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1130,"infectionDiff":1091,"infectionDiffY":2.98904,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"056_023","label":"SNPs","pAvg":0.00332,"pSD":0.01036,"pScaled":0.00148,"pRank":66,"nSamples":500,"individualID.1":56,"individualID.2":23,"transmission":false,"snpDist":12,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":885,"infectionDiff":811,"infectionDiffY":2.22192,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"056_026","label":"SNPs","pAvg":0.00953,"pSD":0.02902,"pScaled":0.00335,"pRank":23,"nSamples":500,"individualID.1":56,"individualID.2":26,"transmission":false,"snpDist":11,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":489,"infectionDiff":108,"infectionDiffY":0.29589,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"056_027","label":"SNPs","pAvg":0.04493,"pSD":0.01265,"pScaled":0.01604,"pRank":8,"nSamples":50,"individualID.1":56,"individualID.2":27,"transmission":false,"snpDist":10,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":662,"infectionDiff":697,"infectionDiffY":1.90959,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"056_033","label":"SNPs","pAvg":0.00351,"pSD":0.01084,"pScaled":0.0016,"pRank":52,"nSamples":500,"individualID.1":56,"individualID.2":33,"transmission":false,"snpDist":13,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":106,"infectionDiff":379,"infectionDiffY":1.03836,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"056_040","label":"SNPs","pAvg":0.0507,"pSD":0.00955,"pScaled":0.04535,"pRank":5,"nSamples":500,"individualID.1":56,"individualID.2":40,"transmission":false,"snpDist":7,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":-110,"infectionDiff":243,"infectionDiffY":0.66575,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"056_052","label":"SNPs","pAvg":0.09615,"pSD":0.0163,"pScaled":0.03607,"pRank":3,"nSamples":50,"individualID.1":56,"individualID.2":52,"transmission":false,"snpDist":8,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":734,"infectionDiff":259,"infectionDiffY":0.70959,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"056_054","label":"SNPs","pAvg":0.67597,"pSD":0.45751,"pScaled":0.17601,"pRank":2,"nSamples":149,"individualID.1":56,"individualID.2":54,"transmission":false,"snpDist":0,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":593,"infectionDiff":648,"infectionDiffY":1.77534,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"056_057","label":"SNPs","pAvg":0.55678,"pSD":0.46301,"pScaled":0.11133,"pRank":4,"nSamples":104,"individualID.1":56,"individualID.2":57,"transmission":false,"snpDist":1,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":563,"infectionDiff":650,"infectionDiffY":1.78082,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"056_058","label":"SNPs","pAvg":0.09407,"pSD":0.01546,"pScaled":0.09283,"pRank":1,"nSamples":500,"individualID.1":56,"individualID.2":58,"transmission":false,"snpDist":4,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":848,"infectionDiff":339,"infectionDiffY":0.92877,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"056_060","label":"SNPs","pAvg":0.02806,"pSD":0.00897,"pScaled":0.0136,"pRank":15,"nSamples":50,"individualID.1":56,"individualID.2":60,"transmission":false,"snpDist":8,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":889,"infectionDiff":981,"infectionDiffY":2.68767,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"056_061","label":"SNPs","pAvg":0.03088,"pSD":0.00639,"pScaled":0.05863,"pRank":5,"nSamples":500,"individualID.1":56,"individualID.2":61,"transmission":false,"snpDist":7,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":682,"infectionDiff":198,"infectionDiffY":0.54247,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"056_067","label":"SNPs","pAvg":0.58194,"pSD":0.47149,"pScaled":0.14684,"pRank":4,"nSamples":113,"individualID.1":56,"individualID.2":67,"transmission":false,"snpDist":2,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":909,"infectionDiff":1045,"infectionDiffY":2.86301,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"056_068","label":"SNPs","pAvg":0.0257,"pSD":0.00632,"pScaled":0.00561,"pRank":19,"nSamples":50,"individualID.1":56,"individualID.2":68,"transmission":false,"snpDist":5,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":515,"infectionDiff":696,"infectionDiffY":1.90685,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"056_069","label":"SNPs","pAvg":0.02116,"pSD":0.00423,"pScaled":0.00679,"pRank":16,"nSamples":50,"individualID.1":56,"individualID.2":69,"transmission":false,"snpDist":6,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":559,"infectionDiff":723,"infectionDiffY":1.98082,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"056_073","label":"SNPs","pAvg":0.02067,"pSD":0.00607,"pScaled":0.01522,"pRank":9,"nSamples":50,"individualID.1":56,"individualID.2":73,"transmission":false,"snpDist":9,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":137,"infectionDiff":70,"infectionDiffY":0.19178,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"056_075","label":"SNPs","pAvg":0.01071,"pSD":0.00358,"pScaled":0.04648,"pRank":7,"nSamples":500,"individualID.1":56,"individualID.2":75,"transmission":false,"snpDist":4,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":643,"infectionDiff":1023,"infectionDiffY":2.80274,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"056_076","label":"SNPs","pAvg":0.03589,"pSD":0.00916,"pScaled":0.0088,"pRank":10,"nSamples":50,"individualID.1":56,"individualID.2":76,"transmission":false,"snpDist":5,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":878,"infectionDiff":696,"infectionDiffY":1.90685,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"056_077","label":"SNPs","pAvg":0.04139,"pSD":0.01049,"pScaled":0.00916,"pRank":12,"nSamples":50,"individualID.1":56,"individualID.2":77,"transmission":false,"snpDist":4,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":31,"infectionDiff":411,"infectionDiffY":1.12603,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"056_078","label":"SNPs","pAvg":0.04126,"pSD":0.0085,"pScaled":0.00914,"pRank":11,"nSamples":50,"individualID.1":56,"individualID.2":78,"transmission":false,"snpDist":4,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":721,"infectionDiff":724,"infectionDiffY":1.98356,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"056_079","label":"SNPs","pAvg":0.00112,"pSD":0.00345,"pScaled":0.00057,"pRank":52,"nSamples":500,"individualID.1":56,"individualID.2":79,"transmission":false,"snpDist":15,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":130,"infectionDiff":8,"infectionDiffY":0.02192,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"056_081","label":"SNPs","pAvg":0.00702,"pSD":0.00266,"pScaled":0.00175,"pRank":33,"nSamples":50,"individualID.1":56,"individualID.2":81,"transmission":false,"snpDist":4,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":855,"infectionDiff":1107,"infectionDiffY":3.03288,"timeCat":"4","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"056_082","label":"SNPs","pAvg":0.0119,"pSD":0.0036,"pScaled":0.00259,"pRank":32,"nSamples":50,"individualID.1":56,"individualID.2":82,"transmission":false,"snpDist":6,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":859,"infectionDiff":1184,"infectionDiffY":3.24384,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"056_083","label":"SNPs","pAvg":0.02642,"pSD":0.00613,"pScaled":0.01028,"pRank":10,"nSamples":50,"individualID.1":56,"individualID.2":83,"transmission":false,"snpDist":6,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":635,"infectionDiff":654,"infectionDiffY":1.79178,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"056_084","label":"SNPs","pAvg":0.00089,"pSD":0.00275,"pScaled":0.00045,"pRank":46,"nSamples":500,"individualID.1":56,"individualID.2":84,"transmission":false,"snpDist":17,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":878,"infectionDiff":702,"infectionDiffY":1.92329,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"056_085","label":"SNPs","pAvg":0.00074,"pSD":0.00231,"pScaled":0.00025,"pRank":51,"nSamples":500,"individualID.1":56,"individualID.2":85,"transmission":false,"snpDist":15,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":-10,"infectionDiff":367,"infectionDiffY":1.00548,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"056_087","label":"SNPs","pAvg":0.00258,"pSD":0.00803,"pScaled":0.0021,"pRank":22,"nSamples":500,"individualID.1":56,"individualID.2":87,"transmission":false,"snpDist":12,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":362,"infectionDiff":535,"infectionDiffY":1.46575,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"056_088","label":"SNPs","pAvg":0.01585,"pSD":0.00491,"pScaled":0.00307,"pRank":22,"nSamples":50,"individualID.1":56,"individualID.2":88,"transmission":false,"snpDist":5,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":472,"infectionDiff":869,"infectionDiffY":2.38082,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"056_089","label":"SNPs","pAvg":0.00078,"pSD":0.00243,"pScaled":0.00025,"pRank":53,"nSamples":500,"individualID.1":56,"individualID.2":89,"transmission":false,"snpDist":16,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":764,"infectionDiff":706,"infectionDiffY":1.93425,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"056_090","label":"SNPs","pAvg":0.00058,"pSD":0.00183,"pScaled":0.00015,"pRank":73,"nSamples":500,"individualID.1":56,"individualID.2":90,"transmission":false,"snpDist":17,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":834,"infectionDiff":932,"infectionDiffY":2.55342,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"056_091","label":"SNPs","pAvg":0.00201,"pSD":0.00617,"pScaled":0.00101,"pRank":37,"nSamples":500,"individualID.1":56,"individualID.2":91,"transmission":false,"snpDist":16,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":855,"infectionDiff":523,"infectionDiffY":1.43288,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"056_092","label":"SNPs","pAvg":0.00086,"pSD":0.00269,"pScaled":0.00035,"pRank":48,"nSamples":500,"individualID.1":56,"individualID.2":92,"transmission":false,"snpDist":16,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":902,"infectionDiff":674,"infectionDiffY":1.84658,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"056_093","label":"SNPs","pAvg":0.00062,"pSD":0.00196,"pScaled":0.00017,"pRank":64,"nSamples":500,"individualID.1":56,"individualID.2":93,"transmission":false,"snpDist":17,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":739,"infectionDiff":900,"infectionDiffY":2.46575,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"056_094","label":"SNPs","pAvg":0.00212,"pSD":0.00663,"pScaled":0.0007,"pRank":54,"nSamples":500,"individualID.1":56,"individualID.2":94,"transmission":false,"snpDist":12,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":785,"infectionDiff":1172,"infectionDiffY":3.21096,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"056_095","label":"SNPs","pAvg":0.00271,"pSD":0.00844,"pScaled":0.00138,"pRank":23,"nSamples":500,"individualID.1":56,"individualID.2":95,"transmission":false,"snpDist":12,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":368,"infectionDiff":604,"infectionDiffY":1.65479,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"056_096","label":"SNPs","pAvg":0.00176,"pSD":0.00555,"pScaled":0.00062,"pRank":58,"nSamples":500,"individualID.1":56,"individualID.2":96,"transmission":false,"snpDist":12,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":463,"infectionDiff":835,"infectionDiffY":2.28767,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"056_097","label":"SNPs","pAvg":0.00159,"pSD":0.00502,"pScaled":0.00036,"pRank":69,"nSamples":500,"individualID.1":56,"individualID.2":97,"transmission":false,"snpDist":16,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":705,"infectionDiff":992,"infectionDiffY":2.71781,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"056_098","label":"SNPs","pAvg":0.00111,"pSD":0.00352,"pScaled":0.00032,"pRank":52,"nSamples":500,"individualID.1":56,"individualID.2":98,"transmission":false,"snpDist":16,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":524,"infectionDiff":765,"infectionDiffY":2.09589,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"056_099","label":"SNPs","pAvg":0.04751,"pSD":0.01303,"pScaled":0.01623,"pRank":5,"nSamples":50,"individualID.1":56,"individualID.2":99,"transmission":false,"snpDist":9,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":507,"infectionDiff":629,"infectionDiffY":1.72329,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"056_100","label":"SNPs","pAvg":0.02989,"pSD":0.009,"pScaled":0.00881,"pRank":11,"nSamples":50,"individualID.1":56,"individualID.2":100,"transmission":false,"snpDist":9,"infectionDate.1":"1996-05-02 10:43:38","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1997-06-29 09:25:54","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":706,"infectionDiff":1006,"infectionDiffY":2.75616,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"057_023","label":"SNPs","pAvg":0.00588,"pSD":0.01811,"pScaled":0.00262,"pRank":57,"nSamples":500,"individualID.1":57,"individualID.2":23,"transmission":false,"snpDist":13,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":322,"infectionDiff":161,"infectionDiffY":0.4411,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"057_027","label":"SNPs","pAvg":0.00587,"pSD":0.018,"pScaled":0.0021,"pRank":64,"nSamples":500,"individualID.1":57,"individualID.2":27,"transmission":false,"snpDist":11,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":99,"infectionDiff":47,"infectionDiffY":0.12877,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"057_060","label":"SNPs","pAvg":0.05335,"pSD":0.01115,"pScaled":0.02585,"pRank":4,"nSamples":50,"individualID.1":57,"individualID.2":60,"transmission":false,"snpDist":9,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":326,"infectionDiff":331,"infectionDiffY":0.90685,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"057_067","label":"SNPs","pAvg":0.76136,"pSD":0.40614,"pScaled":0.19212,"pRank":2,"nSamples":194,"individualID.1":57,"individualID.2":67,"transmission":true,"snpDist":1,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":346,"infectionDiff":395,"infectionDiffY":1.08219,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"057_068","label":"SNPs","pAvg":0.03378,"pSD":0.00797,"pScaled":0.00738,"pRank":14,"nSamples":50,"individualID.1":57,"individualID.2":68,"transmission":false,"snpDist":6,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":-48,"infectionDiff":46,"infectionDiffY":0.12603,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"057_069","label":"SNPs","pAvg":0.02689,"pSD":0.00549,"pScaled":0.00862,"pRank":12,"nSamples":50,"individualID.1":57,"individualID.2":69,"transmission":false,"snpDist":7,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":-4,"infectionDiff":73,"infectionDiffY":0.2,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"057_075","label":"SNPs","pAvg":0.01451,"pSD":0.00377,"pScaled":0.06301,"pRank":2,"nSamples":500,"individualID.1":57,"individualID.2":75,"transmission":false,"snpDist":5,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":80,"infectionDiff":373,"infectionDiffY":1.02192,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"057_076","label":"SNPs","pAvg":0.04492,"pSD":0.00961,"pScaled":0.01101,"pRank":8,"nSamples":50,"individualID.1":57,"individualID.2":76,"transmission":false,"snpDist":6,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":315,"infectionDiff":46,"infectionDiffY":0.12603,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"057_078","label":"SNPs","pAvg":0.05236,"pSD":0.00896,"pScaled":0.01159,"pRank":8,"nSamples":50,"individualID.1":57,"individualID.2":78,"transmission":false,"snpDist":5,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":158,"infectionDiff":74,"infectionDiffY":0.20274,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"057_081","label":"SNPs","pAvg":0.0152,"pSD":0.00439,"pScaled":0.00378,"pRank":13,"nSamples":50,"individualID.1":57,"individualID.2":81,"transmission":false,"snpDist":5,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":292,"infectionDiff":457,"infectionDiffY":1.25205,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"057_082","label":"SNPs","pAvg":0.02547,"pSD":0.00705,"pScaled":0.00554,"pRank":17,"nSamples":50,"individualID.1":57,"individualID.2":82,"transmission":false,"snpDist":7,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":296,"infectionDiff":534,"infectionDiffY":1.46301,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"057_083","label":"SNPs","pAvg":0.03338,"pSD":0.00829,"pScaled":0.01299,"pRank":6,"nSamples":50,"individualID.1":57,"individualID.2":83,"transmission":false,"snpDist":7,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":71,"infectionDiff":4,"infectionDiffY":0.01096,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"057_084","label":"SNPs","pAvg":0.00116,"pSD":0.00356,"pScaled":0.00059,"pRank":38,"nSamples":500,"individualID.1":57,"individualID.2":84,"transmission":false,"snpDist":18,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":315,"infectionDiff":52,"infectionDiffY":0.14247,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"057_088","label":"SNPs","pAvg":0.02756,"pSD":0.00498,"pScaled":0.00533,"pRank":15,"nSamples":50,"individualID.1":57,"individualID.2":88,"transmission":false,"snpDist":6,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-91,"infectionDiff":219,"infectionDiffY":0.6,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"057_089","label":"SNPs","pAvg":0.00101,"pSD":0.00311,"pScaled":0.00032,"pRank":47,"nSamples":500,"individualID.1":57,"individualID.2":89,"transmission":false,"snpDist":17,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":201,"infectionDiff":56,"infectionDiffY":0.15342,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"057_090","label":"SNPs","pAvg":0.001,"pSD":0.00308,"pScaled":0.00026,"pRank":66,"nSamples":500,"individualID.1":57,"individualID.2":90,"transmission":false,"snpDist":18,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":271,"infectionDiff":282,"infectionDiffY":0.7726,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"057_092","label":"SNPs","pAvg":0.00113,"pSD":0.00352,"pScaled":0.00046,"pRank":40,"nSamples":500,"individualID.1":57,"individualID.2":92,"transmission":false,"snpDist":17,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":339,"infectionDiff":24,"infectionDiffY":0.06575,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"057_093","label":"SNPs","pAvg":0.00109,"pSD":0.00338,"pScaled":0.0003,"pRank":50,"nSamples":500,"individualID.1":57,"individualID.2":93,"transmission":false,"snpDist":18,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":176,"infectionDiff":250,"infectionDiffY":0.68493,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"057_094","label":"SNPs","pAvg":0.00474,"pSD":0.0148,"pScaled":0.00156,"pRank":38,"nSamples":500,"individualID.1":57,"individualID.2":94,"transmission":false,"snpDist":12,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":222,"infectionDiff":522,"infectionDiffY":1.43014,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"057_096","label":"SNPs","pAvg":0.00306,"pSD":0.00943,"pScaled":0.00107,"pRank":38,"nSamples":500,"individualID.1":57,"individualID.2":96,"transmission":false,"snpDist":13,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-101,"infectionDiff":185,"infectionDiffY":0.50685,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"057_097","label":"SNPs","pAvg":0.00272,"pSD":0.00832,"pScaled":0.00061,"pRank":65,"nSamples":500,"individualID.1":57,"individualID.2":97,"transmission":false,"snpDist":17,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":142,"infectionDiff":342,"infectionDiffY":0.93699,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"057_098","label":"SNPs","pAvg":0.00196,"pSD":0.00603,"pScaled":0.00056,"pRank":36,"nSamples":500,"individualID.1":57,"individualID.2":98,"transmission":false,"snpDist":17,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":-39,"infectionDiff":115,"infectionDiffY":0.31507,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"057_100","label":"SNPs","pAvg":0.05404,"pSD":0.01005,"pScaled":0.01593,"pRank":5,"nSamples":50,"individualID.1":57,"individualID.2":100,"transmission":false,"snpDist":10,"infectionDate.1":"1998-02-11 11:35:11","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-01-13 10:15:32","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":143,"infectionDiff":356,"infectionDiffY":0.97534,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"058_023","label":"SNPs","pAvg":0.04486,"pSD":0.00975,"pScaled":0.01997,"pRank":8,"nSamples":50,"individualID.1":58,"individualID.2":23,"transmission":false,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":37,"infectionDiff":473,"infectionDiffY":1.29589,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"058_027","label":"SNPs","pAvg":0.05873,"pSD":0.01152,"pScaled":0.02097,"pRank":5,"nSamples":50,"individualID.1":58,"individualID.2":27,"transmission":false,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":-186,"infectionDiff":359,"infectionDiffY":0.98356,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"058_033","label":"SNPs","pAvg":0.00457,"pSD":0.01402,"pScaled":0.00208,"pRank":40,"nSamples":500,"individualID.1":58,"individualID.2":33,"transmission":false,"snpDist":15,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":-742,"infectionDiff":41,"infectionDiffY":0.11233,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"058_054","label":"SNPs","pAvg":0.04479,"pSD":0.00937,"pScaled":0.01166,"pRank":7,"nSamples":50,"individualID.1":58,"individualID.2":54,"transmission":false,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":-255,"infectionDiff":309,"infectionDiffY":0.84658,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"058_057","label":"SNPs","pAvg":0.09763,"pSD":0.01579,"pScaled":0.01952,"pRank":9,"nSamples":50,"individualID.1":58,"individualID.2":57,"transmission":false,"snpDist":5,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":-285,"infectionDiff":311,"infectionDiffY":0.85205,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"058_060","label":"SNPs","pAvg":0.04182,"pSD":0.00863,"pScaled":0.02027,"pRank":7,"nSamples":50,"individualID.1":58,"individualID.2":60,"transmission":false,"snpDist":10,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":41,"infectionDiff":642,"infectionDiffY":1.7589,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"058_067","label":"SNPs","pAvg":0.07406,"pSD":0.01759,"pScaled":0.01869,"pRank":5,"nSamples":50,"individualID.1":58,"individualID.2":67,"transmission":false,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":61,"infectionDiff":706,"infectionDiffY":1.93425,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"058_068","label":"SNPs","pAvg":0.03378,"pSD":0.00797,"pScaled":0.00738,"pRank":14,"nSamples":50,"individualID.1":58,"individualID.2":68,"transmission":false,"snpDist":7,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":-333,"infectionDiff":358,"infectionDiffY":0.98082,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"058_069","label":"SNPs","pAvg":0.02116,"pSD":0.00423,"pScaled":0.00679,"pRank":16,"nSamples":50,"individualID.1":58,"individualID.2":69,"transmission":false,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":-289,"infectionDiff":385,"infectionDiffY":1.05479,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"058_075","label":"SNPs","pAvg":0.01451,"pSD":0.00377,"pScaled":0.06301,"pRank":2,"nSamples":500,"individualID.1":58,"individualID.2":75,"transmission":false,"snpDist":8,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-205,"infectionDiff":684,"infectionDiffY":1.87397,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"058_076","label":"SNPs","pAvg":0.04492,"pSD":0.00961,"pScaled":0.01101,"pRank":8,"nSamples":50,"individualID.1":58,"individualID.2":76,"transmission":false,"snpDist":7,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":30,"infectionDiff":358,"infectionDiffY":0.98082,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"058_077","label":"SNPs","pAvg":0.05254,"pSD":0.00922,"pScaled":0.01162,"pRank":8,"nSamples":50,"individualID.1":58,"individualID.2":77,"transmission":false,"snpDist":6,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":-817,"infectionDiff":73,"infectionDiffY":0.2,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"058_078","label":"SNPs","pAvg":0.04126,"pSD":0.0085,"pScaled":0.00914,"pRank":11,"nSamples":50,"individualID.1":58,"individualID.2":78,"transmission":false,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":-127,"infectionDiff":386,"infectionDiffY":1.05753,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"058_081","label":"SNPs","pAvg":0.01139,"pSD":0.00409,"pScaled":0.00284,"pRank":17,"nSamples":50,"individualID.1":58,"individualID.2":81,"transmission":false,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":7,"infectionDiff":768,"infectionDiffY":2.10411,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"058_082","label":"SNPs","pAvg":0.01804,"pSD":0.00622,"pScaled":0.00393,"pRank":20,"nSamples":50,"individualID.1":58,"individualID.2":82,"transmission":false,"snpDist":8,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":11,"infectionDiff":846,"infectionDiffY":2.31781,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"058_083","label":"SNPs","pAvg":0.03338,"pSD":0.00829,"pScaled":0.01299,"pRank":6,"nSamples":50,"individualID.1":58,"individualID.2":83,"transmission":false,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":-213,"infectionDiff":315,"infectionDiffY":0.86301,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"058_084","label":"SNPs","pAvg":0.00116,"pSD":0.00356,"pScaled":0.00059,"pRank":38,"nSamples":500,"individualID.1":58,"individualID.2":84,"transmission":false,"snpDist":19,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":30,"infectionDiff":363,"infectionDiffY":0.99452,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"058_085","label":"SNPs","pAvg":0.00094,"pSD":0.00292,"pScaled":0.00032,"pRank":45,"nSamples":500,"individualID.1":58,"individualID.2":85,"transmission":false,"snpDist":17,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":-858,"infectionDiff":28,"infectionDiffY":0.07671,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"058_087","label":"SNPs","pAvg":0.00345,"pSD":0.01067,"pScaled":0.00281,"pRank":21,"nSamples":500,"individualID.1":58,"individualID.2":87,"transmission":false,"snpDist":12,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":-486,"infectionDiff":196,"infectionDiffY":0.53699,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"058_088","label":"SNPs","pAvg":0.02117,"pSD":0.00455,"pScaled":0.0041,"pRank":19,"nSamples":50,"individualID.1":58,"individualID.2":88,"transmission":false,"snpDist":7,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-376,"infectionDiff":531,"infectionDiffY":1.45479,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"058_089","label":"SNPs","pAvg":0.00078,"pSD":0.00243,"pScaled":0.00025,"pRank":53,"nSamples":500,"individualID.1":58,"individualID.2":89,"transmission":false,"snpDist":18,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":-84,"infectionDiff":367,"infectionDiffY":1.00548,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"058_090","label":"SNPs","pAvg":0.00772,"pSD":0.00177,"pScaled":0.002,"pRank":22,"nSamples":50,"individualID.1":58,"individualID.2":90,"transmission":false,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":-14,"infectionDiff":594,"infectionDiffY":1.6274,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"058_091","label":"SNPs","pAvg":0.0026,"pSD":0.00799,"pScaled":0.0013,"pRank":34,"nSamples":500,"individualID.1":58,"individualID.2":91,"transmission":false,"snpDist":18,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":7,"infectionDiff":185,"infectionDiffY":0.50685,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"058_092","label":"SNPs","pAvg":0.00113,"pSD":0.00352,"pScaled":0.00046,"pRank":40,"nSamples":500,"individualID.1":58,"individualID.2":92,"transmission":false,"snpDist":18,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":54,"infectionDiff":336,"infectionDiffY":0.92055,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"058_093","label":"SNPs","pAvg":0.00084,"pSD":0.00258,"pScaled":0.00023,"pRank":54,"nSamples":500,"individualID.1":58,"individualID.2":93,"transmission":false,"snpDist":19,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":-109,"infectionDiff":561,"infectionDiffY":1.53699,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"058_094","label":"SNPs","pAvg":0.03592,"pSD":0.01071,"pScaled":0.01184,"pRank":7,"nSamples":50,"individualID.1":58,"individualID.2":94,"transmission":false,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":-63,"infectionDiff":833,"infectionDiffY":2.28219,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"058_095","label":"SNPs","pAvg":0.00345,"pSD":0.01066,"pScaled":0.00176,"pRank":21,"nSamples":500,"individualID.1":58,"individualID.2":95,"transmission":false,"snpDist":12,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":-480,"infectionDiff":265,"infectionDiffY":0.72603,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"058_096","label":"SNPs","pAvg":0.02438,"pSD":0.00611,"pScaled":0.00854,"pRank":10,"nSamples":50,"individualID.1":58,"individualID.2":96,"transmission":false,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-385,"infectionDiff":497,"infectionDiffY":1.36164,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"058_097","label":"SNPs","pAvg":0.02094,"pSD":0.00445,"pScaled":0.00469,"pRank":19,"nSamples":50,"individualID.1":58,"individualID.2":97,"transmission":false,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":-143,"infectionDiff":653,"infectionDiffY":1.78904,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"058_098","label":"SNPs","pAvg":0.00153,"pSD":0.00482,"pScaled":0.00043,"pRank":43,"nSamples":500,"individualID.1":58,"individualID.2":98,"transmission":false,"snpDist":18,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":-324,"infectionDiff":426,"infectionDiffY":1.16712,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"058_099","label":"SNPs","pAvg":0.0061,"pSD":0.01881,"pScaled":0.00208,"pRank":29,"nSamples":500,"individualID.1":58,"individualID.2":99,"transmission":false,"snpDist":11,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":-341,"infectionDiff":290,"infectionDiffY":0.79452,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"058_100","label":"SNPs","pAvg":0.04034,"pSD":0.0097,"pScaled":0.01189,"pRank":7,"nSamples":50,"individualID.1":58,"individualID.2":100,"transmission":false,"infectionDate.1":"1997-04-06 02:35:55","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-10-25 09:14:08","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":-142,"infectionDiff":668,"infectionDiffY":1.83014,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"059_009","label":"SNPs","pAvg":0.00347,"pSD":0.01094,"pScaled":0.01545,"pRank":20,"nSamples":500,"individualID.1":59,"individualID.2":9,"transmission":false,"snpDist":18,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":500,"infectionDiff":470,"infectionDiffY":1.28767,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"059_014","label":"SNPs","pAvg":0.04617,"pSD":0.01026,"pScaled":0.02536,"pRank":8,"nSamples":50,"individualID.1":59,"individualID.2":14,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1993-03-09 06:48:20","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1994-02-04 09:31:30","sampleDiff":-1469,"infectionDiff":47,"infectionDiffY":0.12877,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"059_018","label":"SNPs","pAvg":0.07205,"pSD":0.01896,"pScaled":0.08167,"pRank":2,"nSamples":500,"individualID.1":59,"individualID.2":18,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":-1576,"infectionDiff":244,"infectionDiffY":0.66849,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"059_021","label":"SNPs","pAvg":0.0437,"pSD":0.01066,"pScaled":0.04172,"pRank":9,"nSamples":500,"individualID.1":59,"individualID.2":21,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":-131,"infectionDiff":241,"infectionDiffY":0.66027,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"059_023","label":"SNPs","pAvg":0.00892,"pSD":0.0029,"pScaled":0.00397,"pRank":47,"nSamples":50,"individualID.1":59,"individualID.2":23,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":658,"infectionDiff":2009,"infectionDiffY":5.50411,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"059_026","label":"SNPs","pAvg":0.00094,"pSD":0.00296,"pScaled":0.00033,"pRank":61,"nSamples":500,"individualID.1":59,"individualID.2":26,"transmission":false,"snpDist":11,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":262,"infectionDiff":1306,"infectionDiffY":3.57808,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"059_027","label":"SNPs","pAvg":0.0079,"pSD":0.00233,"pScaled":0.00282,"pRank":52,"nSamples":50,"individualID.1":59,"individualID.2":27,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":434,"infectionDiff":1895,"infectionDiffY":5.19178,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"059_028","label":"SNPs","pAvg":0.0439,"pSD":0.01331,"pScaled":0.01226,"pRank":13,"nSamples":50,"individualID.1":59,"individualID.2":28,"transmission":false,"snpDist":10,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":-349,"infectionDiff":719,"infectionDiffY":1.96986,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"059_033","label":"SNPs","pAvg":0.00032,"pSD":0.00107,"pScaled":0.00014,"pRank":67,"nSamples":500,"individualID.1":59,"individualID.2":33,"transmission":false,"snpDist":15,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":-121,"infectionDiff":1577,"infectionDiffY":4.32055,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"059_035","label":"SNPs","pAvg":0.0591,"pSD":0.01603,"pScaled":0.01536,"pRank":8,"nSamples":50,"individualID.1":59,"individualID.2":35,"transmission":false,"snpDist":8,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":-159,"infectionDiff":374,"infectionDiffY":1.02466,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"059_036","label":"SNPs","pAvg":0.02519,"pSD":0.00809,"pScaled":0.00681,"pRank":23,"nSamples":50,"individualID.1":59,"individualID.2":36,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":-360,"infectionDiff":1185,"infectionDiffY":3.24658,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"059_037","label":"SNPs","pAvg":0.02685,"pSD":0.00698,"pScaled":0.02707,"pRank":14,"nSamples":500,"individualID.1":59,"individualID.2":37,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":27,"infectionDiff":707,"infectionDiffY":1.93699,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"059_038","label":"SNPs","pAvg":0.02653,"pSD":0.00714,"pScaled":0.0315,"pRank":12,"nSamples":500,"individualID.1":59,"individualID.2":38,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":-911,"infectionDiff":352,"infectionDiffY":0.96438,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"059_040","label":"SNPs","pAvg":0.01402,"pSD":0.00503,"pScaled":0.01254,"pRank":27,"nSamples":500,"individualID.1":59,"individualID.2":40,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":-337,"infectionDiff":1441,"infectionDiffY":3.94795,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"059_043","label":"SNPs","pAvg":0.01061,"pSD":0.03268,"pScaled":0.01432,"pRank":19,"nSamples":500,"individualID.1":59,"individualID.2":43,"transmission":false,"snpDist":16,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1993-03-21 20:02:07","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-11-11 11:06:56","sampleDiff":637,"infectionDiff":60,"infectionDiffY":0.16438,"timeCat":"1","Z1":"0","Z2":"1","Z3":"2","Z4":"1","snpClose":false} {"pairID":"059_045","label":"SNPs","pAvg":0.00348,"pSD":0.01091,"pScaled":0.0021,"pRank":42,"nSamples":500,"individualID.1":59,"individualID.2":45,"transmission":false,"snpDist":15,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":36,"infectionDiff":951,"infectionDiffY":2.60548,"timeCat":"3","Z1":"0","Z2":"1","Z3":"2","Z4":"2","snpClose":false} {"pairID":"059_047","label":"SNPs","pAvg":0.00936,"pSD":0.02937,"pScaled":0.00202,"pRank":37,"nSamples":500,"individualID.1":59,"individualID.2":47,"transmission":false,"snpDist":14,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":-1113,"infectionDiff":637,"infectionDiffY":1.74521,"timeCat":"2","Z1":"1","Z2":"1","Z3":"2","Z4":"1","snpClose":false} {"pairID":"059_048","label":"SNPs","pAvg":0.00756,"pSD":0.02325,"pScaled":0.00333,"pRank":27,"nSamples":500,"individualID.1":59,"individualID.2":48,"transmission":false,"snpDist":15,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":-830,"infectionDiff":171,"infectionDiffY":0.46849,"timeCat":"1","Z1":"1","Z2":"1","Z3":"2","Z4":"2","snpClose":false} {"pairID":"059_051","label":"SNPs","pAvg":0.08594,"pSD":0.02257,"pScaled":0.04071,"pRank":4,"nSamples":50,"individualID.1":59,"individualID.2":51,"transmission":false,"snpDist":9,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-1326,"infectionDiff":429,"infectionDiffY":1.17534,"timeCat":"2","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"059_052","label":"SNPs","pAvg":0.00958,"pSD":0.0034,"pScaled":0.00359,"pRank":33,"nSamples":50,"individualID.1":59,"individualID.2":52,"transmission":false,"snpDist":10,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":507,"infectionDiff":1457,"infectionDiffY":3.99178,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"059_053","label":"SNPs","pAvg":0.01284,"pSD":0.00392,"pScaled":0.00857,"pRank":14,"nSamples":50,"individualID.1":59,"individualID.2":53,"transmission":false,"snpDist":8,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":-806,"infectionDiff":921,"infectionDiffY":2.52329,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"059_054","label":"SNPs","pAvg":0.00404,"pSD":0.00121,"pScaled":0.00105,"pRank":55,"nSamples":50,"individualID.1":59,"individualID.2":54,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":365,"infectionDiff":1845,"infectionDiffY":5.05479,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"059_055","label":"SNPs","pAvg":0.02927,"pSD":0.01017,"pScaled":0.00899,"pRank":8,"nSamples":50,"individualID.1":59,"individualID.2":55,"transmission":false,"snpDist":8,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":-652,"infectionDiff":1113,"infectionDiffY":3.04932,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"059_056","label":"SNPs","pAvg":0.00974,"pSD":0.00303,"pScaled":0.00233,"pRank":23,"nSamples":50,"individualID.1":59,"individualID.2":56,"transmission":false,"snpDist":8,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":-228,"infectionDiff":1197,"infectionDiffY":3.27945,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"059_057","label":"SNPs","pAvg":0.00445,"pSD":0.00121,"pScaled":0.00089,"pRank":42,"nSamples":50,"individualID.1":59,"individualID.2":57,"transmission":false,"snpDist":9,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":335,"infectionDiff":1847,"infectionDiffY":5.06027,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"059_058","label":"SNPs","pAvg":0.0043,"pSD":0.002,"pScaled":0.00424,"pRank":46,"nSamples":500,"individualID.1":59,"individualID.2":58,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":620,"infectionDiff":1536,"infectionDiffY":4.20822,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"059_060","label":"SNPs","pAvg":0.00687,"pSD":0.00222,"pScaled":0.00333,"pRank":50,"nSamples":50,"individualID.1":59,"individualID.2":60,"transmission":false,"snpDist":10,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":662,"infectionDiff":2178,"infectionDiffY":5.96712,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"059_061","label":"SNPs","pAvg":0.00343,"pSD":0.00126,"pScaled":0.0065,"pRank":35,"nSamples":500,"individualID.1":59,"individualID.2":61,"transmission":false,"snpDist":9,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":455,"infectionDiff":1396,"infectionDiffY":3.82466,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"059_062","label":"SNPs","pAvg":0.01192,"pSD":0.03636,"pScaled":0.00316,"pRank":26,"nSamples":500,"individualID.1":59,"individualID.2":62,"transmission":false,"snpDist":14,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":-810,"infectionDiff":300,"infectionDiffY":0.82192,"timeCat":"1","Z1":"1","Z2":"1","Z3":"2","Z4":"1","snpClose":false} {"pairID":"059_063","label":"SNPs","pAvg":0.00262,"pSD":0.00821,"pScaled":0.00126,"pRank":28,"nSamples":500,"individualID.1":59,"individualID.2":63,"transmission":false,"snpDist":15,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1993-04-25 22:05:23","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1994-05-05 10:52:37","sampleDiff":-1379,"infectionDiff":95,"infectionDiffY":0.26027,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"059_064","label":"SNPs","pAvg":0.01988,"pSD":0.00647,"pScaled":0.00755,"pRank":8,"nSamples":50,"individualID.1":59,"individualID.2":64,"transmission":false,"snpDist":9,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":-596,"infectionDiff":1077,"infectionDiffY":2.95068,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"059_065","label":"SNPs","pAvg":0.00567,"pSD":0.00164,"pScaled":0.00438,"pRank":21,"nSamples":50,"individualID.1":59,"individualID.2":65,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":-588,"infectionDiff":1010,"infectionDiffY":2.76712,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"059_066","label":"SNPs","pAvg":0.02204,"pSD":0.00799,"pScaled":0.00582,"pRank":12,"nSamples":50,"individualID.1":59,"individualID.2":66,"transmission":false,"snpDist":9,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":-441,"infectionDiff":1157,"infectionDiffY":3.16986,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"059_067","label":"SNPs","pAvg":0.00483,"pSD":0.00136,"pScaled":0.00122,"pRank":56,"nSamples":50,"individualID.1":59,"individualID.2":67,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":681,"infectionDiff":2242,"infectionDiffY":6.14247,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"059_068","label":"SNPs","pAvg":0.01127,"pSD":0.00293,"pScaled":0.00246,"pRank":30,"nSamples":50,"individualID.1":59,"individualID.2":68,"transmission":false,"snpDist":7,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":287,"infectionDiff":1894,"infectionDiffY":5.18904,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"059_069","label":"SNPs","pAvg":0.00129,"pSD":0.00046,"pScaled":0.00041,"pRank":76,"nSamples":50,"individualID.1":59,"individualID.2":69,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":332,"infectionDiff":1921,"infectionDiffY":5.26301,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"059_070","label":"SNPs","pAvg":0.04309,"pSD":0.01025,"pScaled":0.01334,"pRank":11,"nSamples":50,"individualID.1":59,"individualID.2":70,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":-1132,"infectionDiff":338,"infectionDiffY":0.92603,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"059_071","label":"SNPs","pAvg":0.03394,"pSD":0.00809,"pScaled":0.03453,"pRank":10,"nSamples":500,"individualID.1":59,"individualID.2":71,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":387,"infectionDiff":597,"infectionDiffY":1.63562,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"059_072","label":"SNPs","pAvg":0.00348,"pSD":0.0109,"pScaled":0.00106,"pRank":32,"nSamples":500,"individualID.1":59,"individualID.2":72,"transmission":false,"snpDist":15,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":-1172,"infectionDiff":516,"infectionDiffY":1.4137,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"059_073","label":"SNPs","pAvg":0.00041,"pSD":0.00132,"pScaled":0.0003,"pRank":57,"nSamples":500,"individualID.1":59,"individualID.2":73,"transmission":false,"snpDist":11,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":-91,"infectionDiff":1267,"infectionDiffY":3.47123,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"059_074","label":"SNPs","pAvg":0.007,"pSD":0.00191,"pScaled":0.00384,"pRank":12,"nSamples":50,"individualID.1":59,"individualID.2":74,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":-251,"infectionDiff":647,"infectionDiffY":1.7726,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"059_075","label":"SNPs","pAvg":0.00014,"pSD":0.00043,"pScaled":0.00059,"pRank":94,"nSamples":500,"individualID.1":59,"individualID.2":75,"transmission":false,"snpDist":12,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":415,"infectionDiff":2220,"infectionDiffY":6.08219,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"059_076","label":"SNPs","pAvg":0.00732,"pSD":0.0022,"pScaled":0.00179,"pRank":49,"nSamples":50,"individualID.1":59,"individualID.2":76,"transmission":false,"snpDist":7,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":650,"infectionDiff":1894,"infectionDiffY":5.18904,"timeCat":"6","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"059_077","label":"SNPs","pAvg":0.00452,"pSD":0.00206,"pScaled":0.001,"pRank":54,"nSamples":50,"individualID.1":59,"individualID.2":77,"transmission":false,"snpDist":6,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":-197,"infectionDiff":1609,"infectionDiffY":4.40822,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"059_078","label":"SNPs","pAvg":0.00644,"pSD":0.00192,"pScaled":0.00143,"pRank":69,"nSamples":50,"individualID.1":59,"individualID.2":78,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":494,"infectionDiff":1922,"infectionDiffY":5.26575,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"059_079","label":"SNPs","pAvg":0.00941,"pSD":0.00357,"pScaled":0.00473,"pRank":14,"nSamples":50,"individualID.1":59,"individualID.2":79,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":-98,"infectionDiff":1205,"infectionDiffY":3.30137,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"059_080","label":"SNPs","pAvg":0.00051,"pSD":0.00167,"pScaled":0.00376,"pRank":44,"nSamples":500,"individualID.1":59,"individualID.2":80,"transmission":false,"snpDist":13,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":-89,"infectionDiff":1138,"infectionDiffY":3.11781,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"059_081","label":"SNPs","pAvg":0.00205,"pSD":0.00065,"pScaled":0.00051,"pRank":74,"nSamples":50,"individualID.1":59,"individualID.2":81,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":627,"infectionDiff":2304,"infectionDiffY":6.31233,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"059_082","label":"SNPs","pAvg":0.00724,"pSD":0.00205,"pScaled":0.00158,"pRank":51,"nSamples":50,"individualID.1":59,"individualID.2":82,"transmission":false,"snpDist":8,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":631,"infectionDiff":2382,"infectionDiffY":6.52603,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"059_083","label":"SNPs","pAvg":0.0118,"pSD":0.00334,"pScaled":0.00459,"pRank":26,"nSamples":50,"individualID.1":59,"individualID.2":83,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":407,"infectionDiff":1851,"infectionDiffY":5.07123,"timeCat":"6","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"059_084","label":"SNPs","pAvg":0.00047,"pSD":0.00148,"pScaled":0.00024,"pRank":62,"nSamples":500,"individualID.1":59,"individualID.2":84,"transmission":false,"snpDist":19,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":650,"infectionDiff":1899,"infectionDiffY":5.20274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"059_085","label":"SNPs","pAvg":0.00036,"pSD":0.00122,"pScaled":0.00012,"pRank":59,"nSamples":500,"individualID.1":59,"individualID.2":85,"transmission":false,"snpDist":17,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":-238,"infectionDiff":1565,"infectionDiffY":4.28767,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"059_086","label":"SNPs","pAvg":0.00295,"pSD":0.00132,"pScaled":0.00094,"pRank":33,"nSamples":50,"individualID.1":59,"individualID.2":86,"transmission":false,"snpDist":10,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":-400,"infectionDiff":1193,"infectionDiffY":3.26849,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"059_087","label":"SNPs","pAvg":0.00022,"pSD":0.00072,"pScaled":0.00018,"pRank":63,"nSamples":500,"individualID.1":59,"individualID.2":87,"transmission":false,"snpDist":14,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":135,"infectionDiff":1732,"infectionDiffY":4.74521,"timeCat":"5","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"059_088","label":"SNPs","pAvg":0.00648,"pSD":0.00228,"pScaled":0.00125,"pRank":53,"nSamples":50,"individualID.1":59,"individualID.2":88,"transmission":false,"snpDist":7,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":244,"infectionDiff":2067,"infectionDiffY":5.66301,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"059_089","label":"SNPs","pAvg":0.00041,"pSD":0.0013,"pScaled":0.00013,"pRank":73,"nSamples":500,"individualID.1":59,"individualID.2":89,"transmission":false,"snpDist":18,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":536,"infectionDiff":1903,"infectionDiffY":5.2137,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"059_090","label":"SNPs","pAvg":0.00417,"pSD":0.00111,"pScaled":0.00108,"pRank":38,"nSamples":50,"individualID.1":59,"individualID.2":90,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":607,"infectionDiff":2130,"infectionDiffY":5.83562,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"059_091","label":"SNPs","pAvg":0.00069,"pSD":0.00234,"pScaled":0.00035,"pRank":63,"nSamples":500,"individualID.1":59,"individualID.2":91,"transmission":false,"snpDist":18,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":628,"infectionDiff":1721,"infectionDiffY":4.71507,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"059_092","label":"SNPs","pAvg":0.00048,"pSD":0.00148,"pScaled":0.00019,"pRank":60,"nSamples":500,"individualID.1":59,"individualID.2":92,"transmission":false,"snpDist":18,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":675,"infectionDiff":1872,"infectionDiffY":5.12877,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"059_093","label":"SNPs","pAvg":0.00066,"pSD":0.00205,"pScaled":0.00018,"pRank":62,"nSamples":500,"individualID.1":59,"individualID.2":93,"transmission":false,"snpDist":19,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":512,"infectionDiff":2097,"infectionDiffY":5.74521,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"059_094","label":"SNPs","pAvg":0.00159,"pSD":0.00047,"pScaled":0.00052,"pRank":67,"nSamples":50,"individualID.1":59,"individualID.2":94,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":558,"infectionDiff":2369,"infectionDiffY":6.49041,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"059_095","label":"SNPs","pAvg":0.00023,"pSD":0.00079,"pScaled":0.00012,"pRank":61,"nSamples":500,"individualID.1":59,"individualID.2":95,"transmission":false,"snpDist":14,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":140,"infectionDiff":1801,"infectionDiffY":4.93425,"timeCat":"5","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"059_096","label":"SNPs","pAvg":0.00161,"pSD":0.00057,"pScaled":0.00056,"pRank":59,"nSamples":50,"individualID.1":59,"individualID.2":96,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":235,"infectionDiff":2033,"infectionDiffY":5.56986,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"059_097","label":"SNPs","pAvg":0.00711,"pSD":0.00206,"pScaled":0.00159,"pRank":40,"nSamples":50,"individualID.1":59,"individualID.2":97,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":478,"infectionDiff":2189,"infectionDiffY":5.99726,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"059_098","label":"SNPs","pAvg":0.00039,"pSD":0.00125,"pScaled":0.00011,"pRank":76,"nSamples":500,"individualID.1":59,"individualID.2":98,"transmission":false,"snpDist":18,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":297,"infectionDiff":1962,"infectionDiffY":5.37534,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"059_099","label":"SNPs","pAvg":0.00015,"pSD":0.00047,"pScaled":0.00005,"pRank":72,"nSamples":500,"individualID.1":59,"individualID.2":99,"transmission":false,"snpDist":11,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":279,"infectionDiff":1826,"infectionDiffY":5.00274,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"059_100","label":"SNPs","pAvg":0.00879,"pSD":0.00225,"pScaled":0.00259,"pRank":46,"nSamples":50,"individualID.1":59,"individualID.2":100,"transmission":false,"infectionDate.1":"1993-01-21 00:49:13","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1998-02-12 01:37:33","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":479,"infectionDiff":2204,"infectionDiffY":6.03836,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"060_067","label":"SNPs","pAvg":0.05193,"pSD":0.01068,"pScaled":0.0131,"pRank":8,"nSamples":50,"individualID.1":60,"individualID.2":67,"transmission":false,"snpDist":10,"infectionDate.1":"1999-01-08 01:05:48","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-12-05 17:50:03","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":19,"infectionDiff":64,"infectionDiffY":0.17534,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"060_075","label":"SNPs","pAvg":0.00223,"pSD":0.00687,"pScaled":0.0097,"pRank":25,"nSamples":500,"individualID.1":60,"individualID.2":75,"transmission":false,"snpDist":12,"infectionDate.1":"1999-01-08 01:05:48","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-12-05 17:50:03","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-246,"infectionDiff":42,"infectionDiffY":0.11507,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"060_081","label":"SNPs","pAvg":0.02243,"pSD":0.00645,"pScaled":0.00559,"pRank":8,"nSamples":50,"individualID.1":60,"individualID.2":81,"transmission":false,"snpDist":4,"infectionDate.1":"1999-01-08 01:05:48","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-12-05 17:50:03","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":-35,"infectionDiff":126,"infectionDiffY":0.34521,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"060_082","label":"SNPs","pAvg":0.04513,"pSD":0.01,"pScaled":0.00982,"pRank":8,"nSamples":50,"individualID.1":60,"individualID.2":82,"transmission":false,"snpDist":6,"infectionDate.1":"1999-01-08 01:05:48","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-12-05 17:50:03","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":-31,"infectionDiff":204,"infectionDiffY":0.5589,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"060_094","label":"SNPs","pAvg":0.00212,"pSD":0.0065,"pScaled":0.0007,"pRank":52,"nSamples":500,"individualID.1":60,"individualID.2":94,"transmission":false,"snpDist":12,"infectionDate.1":"1999-01-08 01:05:48","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-12-05 17:50:03","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":-104,"infectionDiff":191,"infectionDiffY":0.52329,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"060_097","label":"SNPs","pAvg":0.00526,"pSD":0.01606,"pScaled":0.00118,"pRank":46,"nSamples":500,"individualID.1":60,"individualID.2":97,"transmission":false,"snpDist":16,"infectionDate.1":"1999-01-08 01:05:48","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-12-05 17:50:03","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":-184,"infectionDiff":11,"infectionDiffY":0.03014,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"060_100","label":"SNPs","pAvg":0.02753,"pSD":0.00522,"pScaled":0.00811,"pRank":15,"nSamples":50,"individualID.1":60,"individualID.2":100,"transmission":false,"snpDist":9,"infectionDate.1":"1999-01-08 01:05:48","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-12-05 17:50:03","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":-183,"infectionDiff":26,"infectionDiffY":0.07123,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"061_023","label":"SNPs","pAvg":0.00084,"pSD":0.0026,"pScaled":0.00037,"pRank":83,"nSamples":500,"individualID.1":61,"individualID.2":23,"transmission":false,"snpDist":11,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":203,"infectionDiff":613,"infectionDiffY":1.67945,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"061_027","label":"SNPs","pAvg":0.00866,"pSD":0.00221,"pScaled":0.00309,"pRank":48,"nSamples":50,"individualID.1":61,"individualID.2":27,"transmission":false,"snpDist":9,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":-20,"infectionDiff":499,"infectionDiffY":1.36712,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"061_033","label":"SNPs","pAvg":0.00514,"pSD":0.0157,"pScaled":0.00234,"pRank":33,"nSamples":500,"individualID.1":61,"individualID.2":33,"transmission":false,"snpDist":12,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":-576,"infectionDiff":181,"infectionDiffY":0.49589,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"061_040","label":"SNPs","pAvg":0.00971,"pSD":0.00227,"pScaled":0.00869,"pRank":33,"nSamples":500,"individualID.1":61,"individualID.2":40,"transmission":false,"snpDist":6,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":-792,"infectionDiff":45,"infectionDiffY":0.12329,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"061_052","label":"SNPs","pAvg":0.03057,"pSD":0.00699,"pScaled":0.01147,"pRank":11,"nSamples":50,"individualID.1":61,"individualID.2":52,"transmission":false,"snpDist":7,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":52,"infectionDiff":61,"infectionDiffY":0.16712,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"061_054","label":"SNPs","pAvg":0.03921,"pSD":0.00722,"pScaled":0.01021,"pRank":9,"nSamples":50,"individualID.1":61,"individualID.2":54,"transmission":false,"snpDist":7,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":-89,"infectionDiff":449,"infectionDiffY":1.23014,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"061_057","label":"SNPs","pAvg":0.02467,"pSD":0.00624,"pScaled":0.00493,"pRank":15,"nSamples":50,"individualID.1":61,"individualID.2":57,"transmission":false,"snpDist":8,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":-119,"infectionDiff":452,"infectionDiffY":1.23836,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"061_058","label":"SNPs","pAvg":0.03088,"pSD":0.00639,"pScaled":0.03047,"pRank":11,"nSamples":500,"individualID.1":61,"individualID.2":58,"transmission":false,"snpDist":9,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":166,"infectionDiff":140,"infectionDiffY":0.38356,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"061_060","label":"SNPs","pAvg":0.00523,"pSD":0.00204,"pScaled":0.00253,"pRank":54,"nSamples":50,"individualID.1":61,"individualID.2":60,"transmission":false,"snpDist":7,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":207,"infectionDiff":782,"infectionDiffY":2.14247,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"061_067","label":"SNPs","pAvg":0.01767,"pSD":0.0054,"pScaled":0.00446,"pRank":26,"nSamples":50,"individualID.1":61,"individualID.2":67,"transmission":false,"snpDist":9,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":226,"infectionDiff":846,"infectionDiffY":2.31781,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"061_068","label":"SNPs","pAvg":0.62504,"pSD":0.47909,"pScaled":0.13655,"pRank":4,"nSamples":131,"individualID.1":61,"individualID.2":68,"transmission":true,"snpDist":2,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":-167,"infectionDiff":498,"infectionDiffY":1.36438,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"3","snpClose":true} {"pairID":"061_069","label":"SNPs","pAvg":0.06598,"pSD":0.01456,"pScaled":0.02115,"pRank":7,"nSamples":50,"individualID.1":61,"individualID.2":69,"transmission":true,"snpDist":3,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":-123,"infectionDiff":525,"infectionDiffY":1.43836,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"061_075","label":"SNPs","pAvg":0.00057,"pSD":0.00184,"pScaled":0.00248,"pRank":49,"nSamples":500,"individualID.1":61,"individualID.2":75,"transmission":false,"snpDist":11,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-39,"infectionDiff":824,"infectionDiffY":2.25753,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"061_076","label":"SNPs","pAvg":0.02095,"pSD":0.00456,"pScaled":0.00513,"pRank":22,"nSamples":50,"individualID.1":61,"individualID.2":76,"transmission":false,"snpDist":4,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":195,"infectionDiff":498,"infectionDiffY":1.36438,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"061_077","label":"SNPs","pAvg":0.03178,"pSD":0.00668,"pScaled":0.00703,"pRank":14,"nSamples":50,"individualID.1":61,"individualID.2":77,"transmission":false,"snpDist":3,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":-652,"infectionDiff":213,"infectionDiffY":0.58356,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"061_078","label":"SNPs","pAvg":0.0075,"pSD":0.00175,"pScaled":0.00166,"pRank":62,"nSamples":50,"individualID.1":61,"individualID.2":78,"transmission":false,"snpDist":3,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":39,"infectionDiff":526,"infectionDiffY":1.4411,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"061_081","label":"SNPs","pAvg":0.00564,"pSD":0.00184,"pScaled":0.00141,"pRank":35,"nSamples":50,"individualID.1":61,"individualID.2":81,"transmission":false,"snpDist":3,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":172,"infectionDiff":909,"infectionDiffY":2.49041,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"061_082","label":"SNPs","pAvg":0.01227,"pSD":0.00436,"pScaled":0.00267,"pRank":31,"nSamples":50,"individualID.1":61,"individualID.2":82,"transmission":false,"snpDist":5,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":176,"infectionDiff":986,"infectionDiffY":2.70137,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"061_083","label":"SNPs","pAvg":0.00936,"pSD":0.00227,"pScaled":0.00364,"pRank":38,"nSamples":50,"individualID.1":61,"individualID.2":83,"transmission":false,"snpDist":5,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":-48,"infectionDiff":456,"infectionDiffY":1.24932,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"061_084","label":"SNPs","pAvg":0.00165,"pSD":0.00513,"pScaled":0.00083,"pRank":31,"nSamples":500,"individualID.1":61,"individualID.2":84,"transmission":false,"snpDist":16,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":195,"infectionDiff":504,"infectionDiffY":1.38082,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"061_085","label":"SNPs","pAvg":0.00183,"pSD":0.00564,"pScaled":0.00063,"pRank":28,"nSamples":500,"individualID.1":61,"individualID.2":85,"transmission":false,"snpDist":14,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":-693,"infectionDiff":169,"infectionDiffY":0.46301,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"061_087","label":"SNPs","pAvg":0.01011,"pSD":0.031,"pScaled":0.00825,"pRank":8,"nSamples":500,"individualID.1":61,"individualID.2":87,"transmission":false,"snpDist":11,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":-320,"infectionDiff":336,"infectionDiffY":0.92055,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"1","snpClose":false} {"pairID":"061_088","label":"SNPs","pAvg":0.00778,"pSD":0.00194,"pScaled":0.00151,"pRank":42,"nSamples":50,"individualID.1":61,"individualID.2":88,"transmission":false,"snpDist":4,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-210,"infectionDiff":671,"infectionDiffY":1.83836,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"061_089","label":"SNPs","pAvg":0.00145,"pSD":0.00456,"pScaled":0.00047,"pRank":42,"nSamples":500,"individualID.1":61,"individualID.2":89,"transmission":false,"snpDist":15,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":81,"infectionDiff":507,"infectionDiffY":1.38904,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"061_090","label":"SNPs","pAvg":0.00109,"pSD":0.00346,"pScaled":0.00028,"pRank":64,"nSamples":500,"individualID.1":61,"individualID.2":90,"transmission":false,"snpDist":16,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":152,"infectionDiff":734,"infectionDiffY":2.01096,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"061_091","label":"SNPs","pAvg":0.0018,"pSD":0.00553,"pScaled":0.0009,"pRank":40,"nSamples":500,"individualID.1":61,"individualID.2":91,"transmission":false,"snpDist":15,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":173,"infectionDiff":325,"infectionDiffY":0.89041,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"061_092","label":"SNPs","pAvg":0.00162,"pSD":0.00505,"pScaled":0.00066,"pRank":35,"nSamples":500,"individualID.1":61,"individualID.2":92,"transmission":false,"snpDist":15,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":220,"infectionDiff":476,"infectionDiffY":1.30411,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"061_093","label":"SNPs","pAvg":0.00158,"pSD":0.0049,"pScaled":0.00043,"pRank":45,"nSamples":500,"individualID.1":61,"individualID.2":93,"transmission":false,"snpDist":16,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":57,"infectionDiff":702,"infectionDiffY":1.92329,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"061_094","label":"SNPs","pAvg":0.00294,"pSD":0.00922,"pScaled":0.00097,"pRank":49,"nSamples":500,"individualID.1":61,"individualID.2":94,"transmission":false,"snpDist":11,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":103,"infectionDiff":973,"infectionDiffY":2.66575,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"061_095","label":"SNPs","pAvg":0.00804,"pSD":0.02501,"pScaled":0.00409,"pRank":9,"nSamples":500,"individualID.1":61,"individualID.2":95,"transmission":false,"snpDist":11,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":-315,"infectionDiff":405,"infectionDiffY":1.10959,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"1","snpClose":false} {"pairID":"061_096","label":"SNPs","pAvg":0.00737,"pSD":0.02287,"pScaled":0.00258,"pRank":23,"nSamples":500,"individualID.1":61,"individualID.2":96,"transmission":false,"snpDist":11,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-220,"infectionDiff":637,"infectionDiffY":1.74521,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"061_097","label":"SNPs","pAvg":0.00108,"pSD":0.00343,"pScaled":0.00024,"pRank":76,"nSamples":500,"individualID.1":61,"individualID.2":97,"transmission":false,"snpDist":15,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":23,"infectionDiff":793,"infectionDiffY":2.1726,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"061_098","label":"SNPs","pAvg":0.00075,"pSD":0.00234,"pScaled":0.00021,"pRank":66,"nSamples":500,"individualID.1":61,"individualID.2":98,"transmission":false,"snpDist":15,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":-158,"infectionDiff":566,"infectionDiffY":1.55068,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"061_099","label":"SNPs","pAvg":0.03885,"pSD":0.00802,"pScaled":0.01327,"pRank":10,"nSamples":50,"individualID.1":61,"individualID.2":99,"transmission":false,"snpDist":8,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":-175,"infectionDiff":430,"infectionDiffY":1.17808,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"061_100","label":"SNPs","pAvg":0.01762,"pSD":0.00574,"pScaled":0.00519,"pRank":26,"nSamples":50,"individualID.1":61,"individualID.2":100,"transmission":false,"snpDist":8,"infectionDate.1":"1996-11-16 22:08:58","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-05-12 16:33:19","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":24,"infectionDiff":808,"infectionDiffY":2.2137,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"062_009","label":"SNPs","pAvg":0.00449,"pSD":0.01413,"pScaled":0.02001,"pRank":16,"nSamples":500,"individualID.1":62,"individualID.2":9,"transmission":false,"snpDist":14,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":1311,"infectionDiff":169,"infectionDiffY":0.46301,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"062_023","label":"SNPs","pAvg":0.00869,"pSD":0.00423,"pScaled":0.00387,"pRank":49,"nSamples":50,"individualID.1":62,"individualID.2":23,"transmission":false,"snpDist":10,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1468,"infectionDiff":1708,"infectionDiffY":4.67945,"timeCat":"5","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"062_026","label":"SNPs","pAvg":0.01473,"pSD":0.0037,"pScaled":0.00518,"pRank":18,"nSamples":50,"individualID.1":62,"individualID.2":26,"transmission":false,"snpDist":9,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1072,"infectionDiff":1005,"infectionDiffY":2.75342,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"062_027","label":"SNPs","pAvg":0.00764,"pSD":0.00379,"pScaled":0.00273,"pRank":58,"nSamples":50,"individualID.1":62,"individualID.2":27,"transmission":false,"snpDist":8,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1245,"infectionDiff":1595,"infectionDiffY":4.36986,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"062_028","label":"SNPs","pAvg":0.0439,"pSD":0.01331,"pScaled":0.01226,"pRank":13,"nSamples":50,"individualID.1":62,"individualID.2":28,"transmission":false,"snpDist":8,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":461,"infectionDiff":419,"infectionDiffY":1.14795,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"062_033","label":"SNPs","pAvg":0.00873,"pSD":0.00352,"pScaled":0.00398,"pRank":20,"nSamples":50,"individualID.1":62,"individualID.2":33,"transmission":false,"snpDist":3,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":689,"infectionDiff":1276,"infectionDiffY":3.49589,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"062_035","label":"SNPs","pAvg":0.07508,"pSD":0.01998,"pScaled":0.01952,"pRank":7,"nSamples":50,"individualID.1":62,"individualID.2":35,"transmission":false,"snpDist":8,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":651,"infectionDiff":74,"infectionDiffY":0.20274,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"062_036","label":"SNPs","pAvg":0.03833,"pSD":0.0118,"pScaled":0.01037,"pRank":14,"nSamples":50,"individualID.1":62,"individualID.2":36,"transmission":false,"snpDist":8,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":451,"infectionDiff":884,"infectionDiffY":2.42192,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"062_037","label":"SNPs","pAvg":0.00264,"pSD":0.00818,"pScaled":0.00266,"pRank":44,"nSamples":500,"individualID.1":62,"individualID.2":37,"transmission":false,"snpDist":12,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":838,"infectionDiff":406,"infectionDiffY":1.11233,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"062_038","label":"SNPs","pAvg":0.00273,"pSD":0.00852,"pScaled":0.00324,"pRank":35,"nSamples":500,"individualID.1":62,"individualID.2":38,"transmission":false,"snpDist":13,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":-100,"infectionDiff":51,"infectionDiffY":0.13973,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"062_040","label":"SNPs","pAvg":0.00139,"pSD":0.00455,"pScaled":0.00125,"pRank":63,"nSamples":500,"individualID.1":62,"individualID.2":40,"transmission":false,"snpDist":11,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":473,"infectionDiff":1140,"infectionDiffY":3.12329,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"062_045","label":"SNPs","pAvg":0.047,"pSD":0.01244,"pScaled":0.02845,"pRank":5,"nSamples":50,"individualID.1":62,"individualID.2":45,"transmission":false,"snpDist":4,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":847,"infectionDiff":651,"infectionDiffY":1.78356,"timeCat":"2","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"062_047","label":"SNPs","pAvg":0.63811,"pSD":0.43622,"pScaled":0.13764,"pRank":2,"nSamples":122,"individualID.1":62,"individualID.2":47,"transmission":false,"snpDist":2,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":-302,"infectionDiff":337,"infectionDiffY":0.92329,"timeCat":"1","Z1":"1","Z2":"1","Z3":"2","Z4":"1","snpClose":true} {"pairID":"062_051","label":"SNPs","pAvg":0.10341,"pSD":0.02274,"pScaled":0.04898,"pRank":2,"nSamples":50,"individualID.1":62,"individualID.2":51,"transmission":false,"snpDist":9,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-516,"infectionDiff":129,"infectionDiffY":0.35342,"timeCat":"1","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"062_052","label":"SNPs","pAvg":0.00958,"pSD":0.0034,"pScaled":0.00359,"pRank":33,"nSamples":50,"individualID.1":62,"individualID.2":52,"transmission":false,"snpDist":10,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1317,"infectionDiff":1156,"infectionDiffY":3.16712,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"062_053","label":"SNPs","pAvg":0.00179,"pSD":0.00555,"pScaled":0.00119,"pRank":41,"nSamples":500,"individualID.1":62,"individualID.2":53,"transmission":false,"snpDist":12,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":5,"infectionDiff":621,"infectionDiffY":1.70137,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"062_054","label":"SNPs","pAvg":0.00039,"pSD":0.00129,"pScaled":0.0001,"pRank":74,"nSamples":500,"individualID.1":62,"individualID.2":54,"transmission":false,"snpDist":12,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1176,"infectionDiff":1545,"infectionDiffY":4.23288,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"062_055","label":"SNPs","pAvg":0.00433,"pSD":0.01373,"pScaled":0.00133,"pRank":40,"nSamples":500,"individualID.1":62,"individualID.2":55,"transmission":false,"snpDist":12,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":159,"infectionDiff":813,"infectionDiffY":2.2274,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"062_056","label":"SNPs","pAvg":0.00148,"pSD":0.00461,"pScaled":0.00035,"pRank":51,"nSamples":500,"individualID.1":62,"individualID.2":56,"transmission":false,"snpDist":12,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":583,"infectionDiff":897,"infectionDiffY":2.45753,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"062_057","label":"SNPs","pAvg":0.00043,"pSD":0.00146,"pScaled":0.00009,"pRank":71,"nSamples":500,"individualID.1":62,"individualID.2":57,"transmission":false,"snpDist":13,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1146,"infectionDiff":1547,"infectionDiffY":4.23836,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"062_058","label":"SNPs","pAvg":0.00094,"pSD":0.00302,"pScaled":0.00093,"pRank":56,"nSamples":500,"individualID.1":62,"individualID.2":58,"transmission":false,"snpDist":14,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1431,"infectionDiff":1236,"infectionDiffY":3.3863,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"062_060","label":"SNPs","pAvg":0.00069,"pSD":0.00218,"pScaled":0.00033,"pRank":82,"nSamples":500,"individualID.1":62,"individualID.2":60,"transmission":false,"snpDist":12,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1472,"infectionDiff":1878,"infectionDiffY":5.14521,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"062_061","label":"SNPs","pAvg":0.00035,"pSD":0.00113,"pScaled":0.00066,"pRank":60,"nSamples":500,"individualID.1":62,"individualID.2":61,"transmission":false,"snpDist":11,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1265,"infectionDiff":1096,"infectionDiffY":3.00274,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"062_064","label":"SNPs","pAvg":0.00199,"pSD":0.00631,"pScaled":0.00076,"pRank":40,"nSamples":500,"individualID.1":62,"individualID.2":64,"transmission":false,"snpDist":13,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":215,"infectionDiff":777,"infectionDiffY":2.12877,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"062_065","label":"SNPs","pAvg":0.00078,"pSD":0.00245,"pScaled":0.0006,"pRank":45,"nSamples":500,"individualID.1":62,"individualID.2":65,"transmission":false,"snpDist":12,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":223,"infectionDiff":710,"infectionDiffY":1.94521,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"062_066","label":"SNPs","pAvg":0.00353,"pSD":0.01121,"pScaled":0.00093,"pRank":40,"nSamples":500,"individualID.1":62,"individualID.2":66,"transmission":false,"snpDist":13,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":370,"infectionDiff":856,"infectionDiffY":2.34521,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"1","snpClose":false} {"pairID":"062_067","label":"SNPs","pAvg":0.00048,"pSD":0.00151,"pScaled":0.00012,"pRank":89,"nSamples":500,"individualID.1":62,"individualID.2":67,"transmission":false,"snpDist":14,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1491,"infectionDiff":1942,"infectionDiffY":5.32055,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"062_068","label":"SNPs","pAvg":0.01123,"pSD":0.00475,"pScaled":0.00245,"pRank":33,"nSamples":50,"individualID.1":62,"individualID.2":68,"transmission":false,"snpDist":9,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":1098,"infectionDiff":1593,"infectionDiffY":4.36438,"timeCat":"5","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"062_069","label":"SNPs","pAvg":0.00134,"pSD":0.0007,"pScaled":0.00043,"pRank":75,"nSamples":50,"individualID.1":62,"individualID.2":69,"transmission":false,"snpDist":10,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1142,"infectionDiff":1620,"infectionDiffY":4.43836,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"062_070","label":"SNPs","pAvg":0.04309,"pSD":0.01025,"pScaled":0.01334,"pRank":11,"nSamples":50,"individualID.1":62,"individualID.2":70,"transmission":false,"snpDist":3,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":-321,"infectionDiff":38,"infectionDiffY":0.10411,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"062_071","label":"SNPs","pAvg":0.0437,"pSD":0.01066,"pScaled":0.04447,"pRank":8,"nSamples":500,"individualID.1":62,"individualID.2":71,"transmission":false,"snpDist":5,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":1197,"infectionDiff":296,"infectionDiffY":0.81096,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"062_072","label":"SNPs","pAvg":0.04501,"pSD":0.01346,"pScaled":0.0137,"pRank":8,"nSamples":50,"individualID.1":62,"individualID.2":72,"transmission":false,"snpDist":3,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":-362,"infectionDiff":215,"infectionDiffY":0.58904,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"062_073","label":"SNPs","pAvg":0.00057,"pSD":0.00186,"pScaled":0.00042,"pRank":55,"nSamples":500,"individualID.1":62,"individualID.2":73,"transmission":false,"snpDist":11,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":719,"infectionDiff":967,"infectionDiffY":2.64932,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"062_074","label":"SNPs","pAvg":0.0088,"pSD":0.00254,"pScaled":0.00483,"pRank":7,"nSamples":50,"individualID.1":62,"individualID.2":74,"transmission":false,"snpDist":10,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":559,"infectionDiff":347,"infectionDiffY":0.95068,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"062_075","label":"SNPs","pAvg":0.00015,"pSD":0.00047,"pScaled":0.00063,"pRank":90,"nSamples":500,"individualID.1":62,"individualID.2":75,"transmission":false,"snpDist":16,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1226,"infectionDiff":1920,"infectionDiffY":5.26027,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"062_076","label":"SNPs","pAvg":0.00777,"pSD":0.00384,"pScaled":0.0019,"pRank":45,"nSamples":50,"individualID.1":62,"individualID.2":76,"transmission":false,"snpDist":9,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1460,"infectionDiff":1593,"infectionDiffY":4.36438,"timeCat":"5","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"062_077","label":"SNPs","pAvg":0.00996,"pSD":0.00355,"pScaled":0.0022,"pRank":29,"nSamples":50,"individualID.1":62,"individualID.2":77,"transmission":false,"snpDist":8,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":613,"infectionDiff":1309,"infectionDiffY":3.5863,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"062_078","label":"SNPs","pAvg":0.00591,"pSD":0.00278,"pScaled":0.00131,"pRank":71,"nSamples":50,"individualID.1":62,"individualID.2":78,"transmission":false,"snpDist":8,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1304,"infectionDiff":1621,"infectionDiffY":4.4411,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"062_079","label":"SNPs","pAvg":0.0157,"pSD":0.00413,"pScaled":0.00789,"pRank":10,"nSamples":50,"individualID.1":62,"individualID.2":79,"transmission":false,"snpDist":5,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":713,"infectionDiff":905,"infectionDiffY":2.47945,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"062_080","label":"SNPs","pAvg":0.00083,"pSD":0.00261,"pScaled":0.00603,"pRank":34,"nSamples":500,"individualID.1":62,"individualID.2":80,"transmission":false,"snpDist":13,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":721,"infectionDiff":837,"infectionDiffY":2.29315,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"062_081","label":"SNPs","pAvg":0.00205,"pSD":0.00065,"pScaled":0.00051,"pRank":74,"nSamples":50,"individualID.1":62,"individualID.2":81,"transmission":false,"snpDist":8,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1437,"infectionDiff":2004,"infectionDiffY":5.49041,"timeCat":"6","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"062_082","label":"SNPs","pAvg":0.00724,"pSD":0.00205,"pScaled":0.00158,"pRank":51,"nSamples":50,"individualID.1":62,"individualID.2":82,"transmission":false,"snpDist":10,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1441,"infectionDiff":2081,"infectionDiffY":5.70137,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"062_083","label":"SNPs","pAvg":0.01177,"pSD":0.00535,"pScaled":0.00458,"pRank":29,"nSamples":50,"individualID.1":62,"individualID.2":83,"transmission":false,"snpDist":10,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1217,"infectionDiff":1551,"infectionDiffY":4.24932,"timeCat":"5","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"062_084","label":"SNPs","pAvg":0.00435,"pSD":0.00201,"pScaled":0.00219,"pRank":19,"nSamples":50,"individualID.1":62,"individualID.2":84,"transmission":false,"snpDist":7,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1460,"infectionDiff":1599,"infectionDiffY":4.38082,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"062_085","label":"SNPs","pAvg":0.00824,"pSD":0.00278,"pScaled":0.00282,"pRank":9,"nSamples":50,"individualID.1":62,"individualID.2":85,"transmission":false,"snpDist":5,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":572,"infectionDiff":1264,"infectionDiffY":3.46301,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"062_086","label":"SNPs","pAvg":0.00423,"pSD":0.0017,"pScaled":0.00135,"pRank":29,"nSamples":50,"individualID.1":62,"individualID.2":86,"transmission":false,"snpDist":10,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":410,"infectionDiff":892,"infectionDiffY":2.44384,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"062_087","label":"SNPs","pAvg":0.00051,"pSD":0.00162,"pScaled":0.00042,"pRank":55,"nSamples":500,"individualID.1":62,"individualID.2":87,"transmission":false,"snpDist":14,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":945,"infectionDiff":1432,"infectionDiffY":3.92329,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"062_088","label":"SNPs","pAvg":0.00661,"pSD":0.00318,"pScaled":0.00128,"pRank":52,"nSamples":50,"individualID.1":62,"individualID.2":88,"transmission":false,"snpDist":9,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":1055,"infectionDiff":1767,"infectionDiffY":4.8411,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"062_089","label":"SNPs","pAvg":0.00395,"pSD":0.00188,"pScaled":0.00127,"pRank":23,"nSamples":50,"individualID.1":62,"individualID.2":89,"transmission":false,"snpDist":6,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1346,"infectionDiff":1603,"infectionDiffY":4.39178,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"062_090","label":"SNPs","pAvg":0.00417,"pSD":0.00111,"pScaled":0.00108,"pRank":38,"nSamples":50,"individualID.1":62,"individualID.2":90,"transmission":false,"snpDist":7,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1417,"infectionDiff":1829,"infectionDiffY":5.01096,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"062_091","label":"SNPs","pAvg":0.01495,"pSD":0.00552,"pScaled":0.00749,"pRank":9,"nSamples":50,"individualID.1":62,"individualID.2":91,"transmission":false,"snpDist":6,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1438,"infectionDiff":1420,"infectionDiffY":3.89041,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"062_092","label":"SNPs","pAvg":0.00467,"pSD":0.00205,"pScaled":0.00189,"pRank":14,"nSamples":50,"individualID.1":62,"individualID.2":92,"transmission":false,"snpDist":6,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1485,"infectionDiff":1571,"infectionDiffY":4.30411,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"062_093","label":"SNPs","pAvg":0.00635,"pSD":0.00287,"pScaled":0.00173,"pRank":16,"nSamples":50,"individualID.1":62,"individualID.2":93,"transmission":false,"snpDist":7,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1322,"infectionDiff":1797,"infectionDiffY":4.92329,"timeCat":"5","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"062_094","label":"SNPs","pAvg":0.00016,"pSD":0.0005,"pScaled":0.00005,"pRank":95,"nSamples":500,"individualID.1":62,"individualID.2":94,"transmission":false,"snpDist":14,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1368,"infectionDiff":2069,"infectionDiffY":5.66849,"timeCat":"6","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"062_095","label":"SNPs","pAvg":0.00023,"pSD":0.00079,"pScaled":0.00012,"pRank":61,"nSamples":500,"individualID.1":62,"individualID.2":95,"transmission":false,"snpDist":14,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":950,"infectionDiff":1501,"infectionDiffY":4.11233,"timeCat":"5","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"062_096","label":"SNPs","pAvg":0.00016,"pSD":0.00055,"pScaled":0.00006,"pRank":87,"nSamples":500,"individualID.1":62,"individualID.2":96,"transmission":false,"snpDist":14,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":1045,"infectionDiff":1733,"infectionDiffY":4.74795,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"062_097","label":"SNPs","pAvg":0.00711,"pSD":0.00206,"pScaled":0.00159,"pRank":40,"nSamples":50,"individualID.1":62,"individualID.2":97,"transmission":false,"snpDist":6,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1288,"infectionDiff":1889,"infectionDiffY":5.17534,"timeCat":"6","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"062_098","label":"SNPs","pAvg":0.00373,"pSD":0.00166,"pScaled":0.00106,"pRank":27,"nSamples":50,"individualID.1":62,"individualID.2":98,"transmission":false,"snpDist":6,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":1107,"infectionDiff":1662,"infectionDiffY":4.55342,"timeCat":"5","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"062_099","label":"SNPs","pAvg":0.00015,"pSD":0.00051,"pScaled":0.00005,"pRank":71,"nSamples":500,"individualID.1":62,"individualID.2":99,"transmission":false,"snpDist":11,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":1090,"infectionDiff":1526,"infectionDiffY":4.18082,"timeCat":"5","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"062_100","label":"SNPs","pAvg":0.00088,"pSD":0.00273,"pScaled":0.00026,"pRank":86,"nSamples":500,"individualID.1":62,"individualID.2":100,"transmission":false,"snpDist":11,"infectionDate.1":"1993-11-17 08:00:03","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1995-11-24 14:40:20","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1289,"infectionDiff":1904,"infectionDiffY":5.21644,"timeCat":"6","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"063_009","label":"SNPs","pAvg":0.00075,"pSD":0.00233,"pScaled":0.00334,"pRank":38,"nSamples":500,"individualID.1":63,"individualID.2":9,"transmission":false,"snpDist":15,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":1879,"infectionDiff":375,"infectionDiffY":1.0274,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"063_018","label":"SNPs","pAvg":0.02681,"pSD":0.00545,"pScaled":0.03039,"pRank":13,"nSamples":500,"individualID.1":63,"individualID.2":18,"transmission":false,"snpDist":8,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1993-09-21 18:45:42","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1993-10-20 00:50:43","sampleDiff":-197,"infectionDiff":149,"infectionDiffY":0.40822,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"063_021","label":"SNPs","pAvg":0.05833,"pSD":0.0121,"pScaled":0.05568,"pRank":4,"nSamples":500,"individualID.1":63,"individualID.2":21,"transmission":false,"snpDist":9,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1993-09-19 00:23:37","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1997-10-03 23:38:50","sampleDiff":1248,"infectionDiff":146,"infectionDiffY":0.4,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"063_023","label":"SNPs","pAvg":0.00092,"pSD":0.00285,"pScaled":0.00041,"pRank":81,"nSamples":500,"individualID.1":63,"individualID.2":23,"transmission":false,"snpDist":11,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":2036,"infectionDiff":1914,"infectionDiffY":5.24384,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"063_026","label":"SNPs","pAvg":0.00768,"pSD":0.00248,"pScaled":0.0027,"pRank":33,"nSamples":50,"individualID.1":63,"individualID.2":26,"transmission":false,"snpDist":10,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1640,"infectionDiff":1211,"infectionDiffY":3.31781,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"063_027","label":"SNPs","pAvg":0.00987,"pSD":0.00411,"pScaled":0.00352,"pRank":37,"nSamples":50,"individualID.1":63,"individualID.2":27,"transmission":false,"snpDist":9,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1813,"infectionDiff":1800,"infectionDiffY":4.93151,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"063_028","label":"SNPs","pAvg":0.04043,"pSD":0.00852,"pScaled":0.01129,"pRank":17,"nSamples":50,"individualID.1":63,"individualID.2":28,"transmission":false,"snpDist":9,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":1030,"infectionDiff":625,"infectionDiffY":1.71233,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"063_033","label":"SNPs","pAvg":0.00132,"pSD":0.00067,"pScaled":0.0006,"pRank":61,"nSamples":50,"individualID.1":63,"individualID.2":33,"transmission":false,"snpDist":4,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":1257,"infectionDiff":1482,"infectionDiffY":4.06027,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"063_035","label":"SNPs","pAvg":0.02778,"pSD":0.00623,"pScaled":0.00722,"pRank":18,"nSamples":50,"individualID.1":63,"individualID.2":35,"transmission":false,"snpDist":9,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":1220,"infectionDiff":279,"infectionDiffY":0.76438,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"063_036","label":"SNPs","pAvg":0.03613,"pSD":0.01116,"pScaled":0.00977,"pRank":18,"nSamples":50,"individualID.1":63,"individualID.2":36,"transmission":false,"snpDist":9,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":1019,"infectionDiff":1090,"infectionDiffY":2.9863,"timeCat":"3","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"063_037","label":"SNPs","pAvg":0.00159,"pSD":0.00495,"pScaled":0.0016,"pRank":46,"nSamples":500,"individualID.1":63,"individualID.2":37,"transmission":false,"snpDist":13,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":1406,"infectionDiff":612,"infectionDiffY":1.67671,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"063_038","label":"SNPs","pAvg":0.00211,"pSD":0.00647,"pScaled":0.0025,"pRank":37,"nSamples":500,"individualID.1":63,"individualID.2":38,"transmission":false,"snpDist":14,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":468,"infectionDiff":257,"infectionDiffY":0.70411,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"063_040","label":"SNPs","pAvg":0.00181,"pSD":0.00566,"pScaled":0.00162,"pRank":58,"nSamples":500,"individualID.1":63,"individualID.2":40,"transmission":false,"snpDist":12,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":1041,"infectionDiff":1346,"infectionDiffY":3.68767,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"063_045","label":"SNPs","pAvg":0.00612,"pSD":0.00204,"pScaled":0.00371,"pRank":33,"nSamples":50,"individualID.1":63,"individualID.2":45,"transmission":false,"snpDist":5,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":1415,"infectionDiff":857,"infectionDiffY":2.34795,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"063_047","label":"SNPs","pAvg":0.02563,"pSD":0.00664,"pScaled":0.00553,"pRank":20,"nSamples":50,"individualID.1":63,"individualID.2":47,"transmission":false,"snpDist":3,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":266,"infectionDiff":542,"infectionDiffY":1.48493,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"063_048","label":"SNPs","pAvg":0.01184,"pSD":0.00271,"pScaled":0.00522,"pRank":18,"nSamples":50,"individualID.1":63,"individualID.2":48,"transmission":false,"snpDist":4,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1993-07-11 07:39:56","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1995-11-04 23:54:43","sampleDiff":549,"infectionDiff":76,"infectionDiffY":0.20822,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"063_051","label":"SNPs","pAvg":0.0283,"pSD":0.0064,"pScaled":0.0134,"pRank":15,"nSamples":50,"individualID.1":63,"individualID.2":51,"transmission":false,"snpDist":10,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":52,"infectionDiff":334,"infectionDiffY":0.91507,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"063_052","label":"SNPs","pAvg":0.00081,"pSD":0.00252,"pScaled":0.0003,"pRank":64,"nSamples":500,"individualID.1":63,"individualID.2":52,"transmission":false,"snpDist":11,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1885,"infectionDiff":1362,"infectionDiffY":3.73151,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"063_053","label":"SNPs","pAvg":0.00113,"pSD":0.00359,"pScaled":0.00075,"pRank":47,"nSamples":500,"individualID.1":63,"individualID.2":53,"transmission":false,"snpDist":13,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":573,"infectionDiff":826,"infectionDiffY":2.26301,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"063_054","label":"SNPs","pAvg":0.00016,"pSD":0.00055,"pScaled":0.00004,"pRank":75,"nSamples":500,"individualID.1":63,"individualID.2":54,"transmission":false,"snpDist":13,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1744,"infectionDiff":1750,"infectionDiffY":4.79452,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"063_055","label":"SNPs","pAvg":0.00152,"pSD":0.00476,"pScaled":0.00047,"pRank":49,"nSamples":500,"individualID.1":63,"individualID.2":55,"transmission":false,"snpDist":13,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":727,"infectionDiff":1018,"infectionDiffY":2.78904,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"063_056","label":"SNPs","pAvg":0.00081,"pSD":0.00255,"pScaled":0.00019,"pRank":56,"nSamples":500,"individualID.1":63,"individualID.2":56,"transmission":false,"snpDist":13,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":1151,"infectionDiff":1103,"infectionDiffY":3.02192,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"063_057","label":"SNPs","pAvg":0.00036,"pSD":0.0012,"pScaled":0.00007,"pRank":74,"nSamples":500,"individualID.1":63,"individualID.2":57,"transmission":false,"snpDist":14,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1714,"infectionDiff":1753,"infectionDiffY":4.80274,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"063_058","label":"SNPs","pAvg":0.00078,"pSD":0.00246,"pScaled":0.00077,"pRank":60,"nSamples":500,"individualID.1":63,"individualID.2":58,"transmission":false,"snpDist":15,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1999,"infectionDiff":1441,"infectionDiffY":3.94795,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"063_060","label":"SNPs","pAvg":0.00091,"pSD":0.00277,"pScaled":0.00044,"pRank":76,"nSamples":500,"individualID.1":63,"individualID.2":60,"transmission":false,"snpDist":13,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":2040,"infectionDiff":2083,"infectionDiffY":5.70685,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"063_061","label":"SNPs","pAvg":0.00041,"pSD":0.0013,"pScaled":0.00077,"pRank":58,"nSamples":500,"individualID.1":63,"individualID.2":61,"transmission":false,"snpDist":12,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1833,"infectionDiff":1301,"infectionDiffY":3.56438,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"063_062","label":"SNPs","pAvg":0.03313,"pSD":0.00806,"pScaled":0.00877,"pRank":14,"nSamples":50,"individualID.1":63,"individualID.2":62,"transmission":false,"snpDist":3,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1993-11-17 08:00:03","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1995-11-24 14:40:20","sampleDiff":568,"infectionDiff":205,"infectionDiffY":0.56164,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"063_064","label":"SNPs","pAvg":0.0006,"pSD":0.00192,"pScaled":0.00023,"pRank":52,"nSamples":500,"individualID.1":63,"individualID.2":64,"transmission":false,"snpDist":14,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":783,"infectionDiff":982,"infectionDiffY":2.69041,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"063_065","label":"SNPs","pAvg":0.0013,"pSD":0.00413,"pScaled":0.00101,"pRank":43,"nSamples":500,"individualID.1":63,"individualID.2":65,"transmission":false,"snpDist":13,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":791,"infectionDiff":915,"infectionDiffY":2.50685,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"063_066","label":"SNPs","pAvg":0.00318,"pSD":0.0099,"pScaled":0.00084,"pRank":42,"nSamples":500,"individualID.1":63,"individualID.2":66,"transmission":false,"snpDist":14,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":938,"infectionDiff":1062,"infectionDiffY":2.90959,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"063_067","label":"SNPs","pAvg":0.00037,"pSD":0.00114,"pScaled":0.00009,"pRank":93,"nSamples":500,"individualID.1":63,"individualID.2":67,"transmission":false,"snpDist":15,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":2060,"infectionDiff":2147,"infectionDiffY":5.88219,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"063_068","label":"SNPs","pAvg":0.00539,"pSD":0.00243,"pScaled":0.00118,"pRank":64,"nSamples":50,"individualID.1":63,"individualID.2":68,"transmission":false,"snpDist":10,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":1666,"infectionDiff":1799,"infectionDiffY":4.92877,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"063_069","label":"SNPs","pAvg":0.00015,"pSD":0.00047,"pScaled":0.00005,"pRank":83,"nSamples":500,"individualID.1":63,"individualID.2":69,"transmission":false,"snpDist":11,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1710,"infectionDiff":1826,"infectionDiffY":5.00274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"063_070","label":"SNPs","pAvg":0.76788,"pSD":0.40708,"pScaled":0.23776,"pRank":1,"nSamples":203,"individualID.1":63,"individualID.2":70,"transmission":true,"snpDist":0,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1993-12-25 05:01:42","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1995-01-07 11:11:12","sampleDiff":247,"infectionDiff":243,"infectionDiffY":0.66575,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"063_071","label":"SNPs","pAvg":0.04616,"pSD":0.01291,"pScaled":0.04697,"pRank":6,"nSamples":500,"individualID.1":63,"individualID.2":71,"transmission":true,"snpDist":4,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":1766,"infectionDiff":502,"infectionDiffY":1.37534,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"063_072","label":"SNPs","pAvg":0.79007,"pSD":0.3992,"pScaled":0.24042,"pRank":1,"nSamples":230,"individualID.1":63,"individualID.2":72,"transmission":true,"snpDist":0,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":206,"infectionDiff":421,"infectionDiffY":1.15342,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"063_073","label":"SNPs","pAvg":0.00076,"pSD":0.00246,"pScaled":0.00056,"pRank":52,"nSamples":500,"individualID.1":63,"individualID.2":73,"transmission":false,"snpDist":12,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":1288,"infectionDiff":1172,"infectionDiffY":3.21096,"timeCat":"4","Z1":"0","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"063_074","label":"SNPs","pAvg":0.00081,"pSD":0.00254,"pScaled":0.00045,"pRank":45,"nSamples":500,"individualID.1":63,"individualID.2":74,"transmission":false,"snpDist":11,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":1128,"infectionDiff":552,"infectionDiffY":1.51233,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"063_075","label":"SNPs","pAvg":0.00032,"pSD":0.00101,"pScaled":0.0014,"pRank":59,"nSamples":500,"individualID.1":63,"individualID.2":75,"transmission":false,"snpDist":17,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1794,"infectionDiff":2125,"infectionDiffY":5.82192,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"063_076","label":"SNPs","pAvg":0.00153,"pSD":0.00068,"pScaled":0.00037,"pRank":72,"nSamples":50,"individualID.1":63,"individualID.2":76,"transmission":false,"snpDist":10,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":2029,"infectionDiff":1799,"infectionDiffY":4.92877,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"063_077","label":"SNPs","pAvg":0.00182,"pSD":0.00083,"pScaled":0.0004,"pRank":64,"nSamples":50,"individualID.1":63,"individualID.2":77,"transmission":false,"snpDist":9,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":1182,"infectionDiff":1514,"infectionDiffY":4.14795,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"063_078","label":"SNPs","pAvg":0.00867,"pSD":0.00167,"pScaled":0.00192,"pRank":48,"nSamples":50,"individualID.1":63,"individualID.2":78,"transmission":false,"snpDist":9,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1872,"infectionDiff":1827,"infectionDiffY":5.00548,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"063_079","label":"SNPs","pAvg":0.83725,"pSD":0.36599,"pScaled":0.42094,"pRank":1,"nSamples":302,"individualID.1":63,"individualID.2":79,"transmission":false,"snpDist":2,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":1281,"infectionDiff":1110,"infectionDiffY":3.0411,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"063_080","label":"SNPs","pAvg":0.00068,"pSD":0.0021,"pScaled":0.00493,"pRank":41,"nSamples":500,"individualID.1":63,"individualID.2":80,"transmission":false,"snpDist":14,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":1290,"infectionDiff":1043,"infectionDiffY":2.85753,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"063_081","label":"SNPs","pAvg":0.00329,"pSD":0.00116,"pScaled":0.00082,"pRank":58,"nSamples":50,"individualID.1":63,"individualID.2":81,"transmission":false,"snpDist":9,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":2006,"infectionDiff":2210,"infectionDiffY":6.05479,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"063_082","label":"SNPs","pAvg":0.00052,"pSD":0.00161,"pScaled":0.00011,"pRank":95,"nSamples":500,"individualID.1":63,"individualID.2":82,"transmission":false,"snpDist":11,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":2010,"infectionDiff":2287,"infectionDiffY":6.26575,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"063_083","label":"SNPs","pAvg":0.00054,"pSD":0.00181,"pScaled":0.00021,"pRank":77,"nSamples":500,"individualID.1":63,"individualID.2":83,"transmission":false,"snpDist":11,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1785,"infectionDiff":1757,"infectionDiffY":4.8137,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"063_084","label":"SNPs","pAvg":0.00817,"pSD":0.00355,"pScaled":0.00412,"pRank":9,"nSamples":50,"individualID.1":63,"individualID.2":84,"transmission":false,"snpDist":4,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":2029,"infectionDiff":1805,"infectionDiffY":4.94521,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"063_085","label":"SNPs","pAvg":0.62085,"pSD":0.48444,"pScaled":0.21256,"pRank":4,"nSamples":131,"individualID.1":63,"individualID.2":85,"transmission":false,"snpDist":2,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":1140,"infectionDiff":1470,"infectionDiffY":4.0274,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"063_086","label":"SNPs","pAvg":0.00034,"pSD":0.00111,"pScaled":0.00011,"pRank":57,"nSamples":500,"individualID.1":63,"individualID.2":86,"transmission":false,"snpDist":11,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":978,"infectionDiff":1098,"infectionDiffY":3.00822,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"063_087","label":"SNPs","pAvg":0.00021,"pSD":0.00069,"pScaled":0.00017,"pRank":64,"nSamples":500,"individualID.1":63,"individualID.2":87,"transmission":false,"snpDist":15,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":1513,"infectionDiff":1637,"infectionDiffY":4.48493,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"063_088","label":"SNPs","pAvg":0.00446,"pSD":0.00093,"pScaled":0.00086,"pRank":67,"nSamples":50,"individualID.1":63,"individualID.2":88,"transmission":false,"snpDist":10,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":1623,"infectionDiff":1972,"infectionDiffY":5.40274,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"063_089","label":"SNPs","pAvg":0.00741,"pSD":0.00341,"pScaled":0.00238,"pRank":11,"nSamples":50,"individualID.1":63,"individualID.2":89,"transmission":false,"snpDist":3,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1915,"infectionDiff":1808,"infectionDiffY":4.95342,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"063_090","label":"SNPs","pAvg":0.0079,"pSD":0.00211,"pScaled":0.00205,"pRank":21,"nSamples":50,"individualID.1":63,"individualID.2":90,"transmission":false,"snpDist":4,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1985,"infectionDiff":2035,"infectionDiffY":5.57534,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"063_091","label":"SNPs","pAvg":0.00439,"pSD":0.00191,"pScaled":0.0022,"pRank":25,"nSamples":50,"individualID.1":63,"individualID.2":91,"transmission":false,"snpDist":3,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":2006,"infectionDiff":1626,"infectionDiffY":4.45479,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"063_092","label":"SNPs","pAvg":0.00861,"pSD":0.00375,"pScaled":0.00349,"pRank":8,"nSamples":50,"individualID.1":63,"individualID.2":92,"transmission":false,"snpDist":3,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":2053,"infectionDiff":1777,"infectionDiffY":4.86849,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"063_093","label":"SNPs","pAvg":0.00824,"pSD":0.00229,"pScaled":0.00224,"pRank":12,"nSamples":50,"individualID.1":63,"individualID.2":93,"transmission":false,"snpDist":4,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1890,"infectionDiff":2003,"infectionDiffY":5.48767,"timeCat":"6","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"063_094","label":"SNPs","pAvg":0.00041,"pSD":0.00127,"pScaled":0.00013,"pRank":86,"nSamples":500,"individualID.1":63,"individualID.2":94,"transmission":false,"snpDist":15,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1936,"infectionDiff":2274,"infectionDiffY":6.23014,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"063_095","label":"SNPs","pAvg":0.00021,"pSD":0.00073,"pScaled":0.00011,"pRank":64,"nSamples":500,"individualID.1":63,"individualID.2":95,"transmission":false,"snpDist":15,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":1519,"infectionDiff":1706,"infectionDiffY":4.67397,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"063_096","label":"SNPs","pAvg":0.0002,"pSD":0.00062,"pScaled":0.00007,"pRank":81,"nSamples":500,"individualID.1":63,"individualID.2":96,"transmission":false,"snpDist":15,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":1613,"infectionDiff":1938,"infectionDiffY":5.30959,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"063_097","label":"SNPs","pAvg":0.00476,"pSD":0.00107,"pScaled":0.00107,"pRank":49,"nSamples":50,"individualID.1":63,"individualID.2":97,"transmission":false,"snpDist":3,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1856,"infectionDiff":2094,"infectionDiffY":5.73699,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"063_098","label":"SNPs","pAvg":0.01495,"pSD":0.00327,"pScaled":0.00424,"pRank":9,"nSamples":50,"individualID.1":63,"individualID.2":98,"transmission":false,"snpDist":3,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":1675,"infectionDiff":1867,"infectionDiffY":5.11507,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"063_099","label":"SNPs","pAvg":0.00035,"pSD":0.00116,"pScaled":0.00012,"pRank":65,"nSamples":500,"individualID.1":63,"individualID.2":99,"transmission":false,"snpDist":12,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":1658,"infectionDiff":1731,"infectionDiffY":4.74247,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"063_100","label":"SNPs","pAvg":0.0002,"pSD":0.00062,"pScaled":0.00006,"pRank":94,"nSamples":500,"individualID.1":63,"individualID.2":100,"transmission":false,"snpDist":12,"infectionDate.1":"1993-04-25 22:05:23","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1994-05-05 10:52:37","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1857,"infectionDiff":2109,"infectionDiffY":5.77808,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"064_023","label":"SNPs","pAvg":0.00229,"pSD":0.00728,"pScaled":0.00102,"pRank":71,"nSamples":500,"individualID.1":64,"individualID.2":23,"transmission":false,"snpDist":13,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1253,"infectionDiff":932,"infectionDiffY":2.55342,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"064_026","label":"SNPs","pAvg":0.00405,"pSD":0.01263,"pScaled":0.00142,"pRank":49,"nSamples":500,"individualID.1":64,"individualID.2":26,"transmission":false,"snpDist":12,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":858,"infectionDiff":229,"infectionDiffY":0.6274,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"064_027","label":"SNPs","pAvg":0.00134,"pSD":0.00419,"pScaled":0.00048,"pRank":76,"nSamples":500,"individualID.1":64,"individualID.2":27,"transmission":false,"snpDist":11,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1030,"infectionDiff":818,"infectionDiffY":2.2411,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"064_033","label":"SNPs","pAvg":0.00633,"pSD":0.01967,"pScaled":0.00289,"pRank":31,"nSamples":500,"individualID.1":64,"individualID.2":33,"transmission":false,"snpDist":14,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":474,"infectionDiff":500,"infectionDiffY":1.36986,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"064_036","label":"SNPs","pAvg":0.03624,"pSD":0.00766,"pScaled":0.0098,"pRank":16,"nSamples":50,"individualID.1":64,"individualID.2":36,"transmission":false,"snpDist":7,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":236,"infectionDiff":108,"infectionDiffY":0.29589,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"064_040","label":"SNPs","pAvg":0.02653,"pSD":0.00714,"pScaled":0.02374,"pRank":16,"nSamples":500,"individualID.1":64,"individualID.2":40,"transmission":false,"snpDist":8,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":258,"infectionDiff":364,"infectionDiffY":0.99726,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"064_052","label":"SNPs","pAvg":0.03005,"pSD":0.00748,"pScaled":0.01127,"pRank":12,"nSamples":50,"individualID.1":64,"individualID.2":52,"transmission":false,"snpDist":9,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1102,"infectionDiff":380,"infectionDiffY":1.0411,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"064_054","label":"SNPs","pAvg":0.65864,"pSD":0.45967,"pScaled":0.1715,"pRank":3,"nSamples":140,"individualID.1":64,"individualID.2":54,"transmission":false,"snpDist":1,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":961,"infectionDiff":768,"infectionDiffY":2.10411,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":true} {"pairID":"064_055","label":"SNPs","pAvg":0.7365,"pSD":0.43416,"pScaled":0.2262,"pRank":1,"nSamples":185,"individualID.1":64,"individualID.2":55,"transmission":false,"snpDist":1,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":-56,"infectionDiff":36,"infectionDiffY":0.09863,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":true} {"pairID":"064_056","label":"SNPs","pAvg":0.57463,"pSD":0.47966,"pScaled":0.13731,"pRank":5,"nSamples":113,"individualID.1":64,"individualID.2":56,"transmission":false,"snpDist":1,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":368,"infectionDiff":121,"infectionDiffY":0.33151,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":true} {"pairID":"064_057","label":"SNPs","pAvg":0.52915,"pSD":0.4917,"pScaled":0.10581,"pRank":5,"nSamples":104,"individualID.1":64,"individualID.2":57,"transmission":false,"snpDist":2,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":931,"infectionDiff":771,"infectionDiffY":2.11233,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":true} {"pairID":"064_058","label":"SNPs","pAvg":0.02961,"pSD":0.00726,"pScaled":0.02922,"pRank":12,"nSamples":500,"individualID.1":64,"individualID.2":58,"transmission":false,"snpDist":5,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1216,"infectionDiff":459,"infectionDiffY":1.25753,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"064_060","label":"SNPs","pAvg":0.00991,"pSD":0.0035,"pScaled":0.0048,"pRank":32,"nSamples":50,"individualID.1":64,"individualID.2":60,"transmission":false,"snpDist":9,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1257,"infectionDiff":1101,"infectionDiffY":3.01644,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"064_061","label":"SNPs","pAvg":0.04421,"pSD":0.01282,"pScaled":0.08394,"pRank":3,"nSamples":500,"individualID.1":64,"individualID.2":61,"transmission":false,"snpDist":8,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1050,"infectionDiff":319,"infectionDiffY":0.87397,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"064_066","label":"SNPs","pAvg":0.69593,"pSD":0.44833,"pScaled":0.18378,"pRank":2,"nSamples":158,"individualID.1":64,"individualID.2":66,"transmission":false,"snpDist":0,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":155,"infectionDiff":80,"infectionDiffY":0.21918,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":true} {"pairID":"064_067","label":"SNPs","pAvg":0.01363,"pSD":0.00541,"pScaled":0.00344,"pRank":36,"nSamples":50,"individualID.1":64,"individualID.2":67,"transmission":false,"snpDist":3,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1277,"infectionDiff":1165,"infectionDiffY":3.19178,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"064_068","label":"SNPs","pAvg":0.03959,"pSD":0.01221,"pScaled":0.00865,"pRank":11,"nSamples":50,"individualID.1":64,"individualID.2":68,"transmission":false,"snpDist":6,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":883,"infectionDiff":817,"infectionDiffY":2.23836,"timeCat":"3","Z1":"0","Z2":"1","Z3":"2","Z4":"2"} {"pairID":"064_069","label":"SNPs","pAvg":0.0291,"pSD":0.00742,"pScaled":0.00933,"pRank":11,"nSamples":50,"individualID.1":64,"individualID.2":69,"transmission":false,"snpDist":7,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":928,"infectionDiff":844,"infectionDiffY":2.31233,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"064_073","label":"SNPs","pAvg":0.01245,"pSD":0.00355,"pScaled":0.00917,"pRank":12,"nSamples":50,"individualID.1":64,"individualID.2":73,"transmission":false,"snpDist":10,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":505,"infectionDiff":190,"infectionDiffY":0.52055,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"064_075","label":"SNPs","pAvg":0.00343,"pSD":0.00126,"pScaled":0.01487,"pRank":19,"nSamples":500,"individualID.1":64,"individualID.2":75,"transmission":false,"snpDist":3,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1011,"infectionDiff":1143,"infectionDiffY":3.13151,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"064_076","label":"SNPs","pAvg":0.02442,"pSD":0.0061,"pScaled":0.00598,"pRank":18,"nSamples":50,"individualID.1":64,"individualID.2":76,"transmission":false,"snpDist":6,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1246,"infectionDiff":817,"infectionDiffY":2.23836,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"064_077","label":"SNPs","pAvg":0.03047,"pSD":0.00729,"pScaled":0.00674,"pRank":15,"nSamples":50,"individualID.1":64,"individualID.2":77,"transmission":false,"snpDist":5,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":399,"infectionDiff":532,"infectionDiffY":1.45753,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"064_078","label":"SNPs","pAvg":0.01484,"pSD":0.00374,"pScaled":0.00329,"pRank":31,"nSamples":50,"individualID.1":64,"individualID.2":78,"transmission":false,"snpDist":5,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1090,"infectionDiff":845,"infectionDiffY":2.31507,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"064_079","label":"SNPs","pAvg":0.00173,"pSD":0.00547,"pScaled":0.00087,"pRank":43,"nSamples":500,"individualID.1":64,"individualID.2":79,"transmission":false,"snpDist":16,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":498,"infectionDiff":129,"infectionDiffY":0.35342,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"064_080","label":"SNPs","pAvg":0.0024,"pSD":0.00746,"pScaled":0.0175,"pRank":10,"nSamples":500,"individualID.1":64,"individualID.2":80,"transmission":false,"snpDist":12,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":507,"infectionDiff":61,"infectionDiffY":0.16712,"timeCat":"1","Z1":"0","Z2":"1","Z3":"2","Z4":"3","snpClose":false} {"pairID":"064_081","label":"SNPs","pAvg":0.00499,"pSD":0.00162,"pScaled":0.00124,"pRank":36,"nSamples":50,"individualID.1":64,"individualID.2":81,"transmission":false,"snpDist":5,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1223,"infectionDiff":1228,"infectionDiffY":3.36438,"timeCat":"4","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"064_082","label":"SNPs","pAvg":0.01688,"pSD":0.00629,"pScaled":0.00368,"pRank":24,"nSamples":50,"individualID.1":64,"individualID.2":82,"transmission":false,"snpDist":7,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1227,"infectionDiff":1305,"infectionDiffY":3.57534,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"064_083","label":"SNPs","pAvg":0.02082,"pSD":0.00619,"pScaled":0.0081,"pRank":17,"nSamples":50,"individualID.1":64,"individualID.2":83,"transmission":false,"snpDist":7,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1003,"infectionDiff":775,"infectionDiffY":2.12329,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"064_084","label":"SNPs","pAvg":0.00092,"pSD":0.00295,"pScaled":0.00046,"pRank":44,"nSamples":500,"individualID.1":64,"individualID.2":84,"transmission":false,"snpDist":18,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1246,"infectionDiff":823,"infectionDiffY":2.25479,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"064_085","label":"SNPs","pAvg":0.00156,"pSD":0.00493,"pScaled":0.00053,"pRank":34,"nSamples":500,"individualID.1":64,"individualID.2":85,"transmission":false,"snpDist":16,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":358,"infectionDiff":488,"infectionDiffY":1.33699,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"064_086","label":"SNPs","pAvg":0.05058,"pSD":0.01428,"pScaled":0.01611,"pRank":5,"nSamples":50,"individualID.1":64,"individualID.2":86,"transmission":false,"snpDist":9,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":196,"infectionDiff":116,"infectionDiffY":0.31781,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"064_087","label":"SNPs","pAvg":0.00471,"pSD":0.01467,"pScaled":0.00384,"pRank":16,"nSamples":500,"individualID.1":64,"individualID.2":87,"transmission":false,"snpDist":13,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":730,"infectionDiff":655,"infectionDiffY":1.79452,"timeCat":"2","Z1":"0","Z2":"1","Z3":"2","Z4":"2","snpClose":false} {"pairID":"064_088","label":"SNPs","pAvg":0.01502,"pSD":0.00415,"pScaled":0.00291,"pRank":25,"nSamples":50,"individualID.1":64,"individualID.2":88,"transmission":false,"snpDist":6,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":840,"infectionDiff":990,"infectionDiffY":2.71233,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"064_089","label":"SNPs","pAvg":0.0011,"pSD":0.00345,"pScaled":0.00035,"pRank":45,"nSamples":500,"individualID.1":64,"individualID.2":89,"transmission":false,"snpDist":17,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1132,"infectionDiff":826,"infectionDiffY":2.26301,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"064_090","label":"SNPs","pAvg":0.00107,"pSD":0.00338,"pScaled":0.00028,"pRank":65,"nSamples":500,"individualID.1":64,"individualID.2":90,"transmission":false,"snpDist":18,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1202,"infectionDiff":1053,"infectionDiffY":2.88493,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"064_091","label":"SNPs","pAvg":0.00396,"pSD":0.01251,"pScaled":0.00198,"pRank":30,"nSamples":500,"individualID.1":64,"individualID.2":91,"transmission":false,"snpDist":17,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1223,"infectionDiff":644,"infectionDiffY":1.76438,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"064_092","label":"SNPs","pAvg":0.00092,"pSD":0.00297,"pScaled":0.00037,"pRank":45,"nSamples":500,"individualID.1":64,"individualID.2":92,"transmission":false,"snpDist":17,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1270,"infectionDiff":795,"infectionDiffY":2.17808,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"064_093","label":"SNPs","pAvg":0.00171,"pSD":0.00539,"pScaled":0.00046,"pRank":43,"nSamples":500,"individualID.1":64,"individualID.2":93,"transmission":false,"snpDist":18,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1108,"infectionDiff":1021,"infectionDiffY":2.79726,"timeCat":"3","Z1":"1","Z2":"1","Z3":"2","Z4":"3","snpClose":false} {"pairID":"064_094","label":"SNPs","pAvg":0.00075,"pSD":0.00241,"pScaled":0.00025,"pRank":79,"nSamples":500,"individualID.1":64,"individualID.2":94,"transmission":false,"snpDist":13,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1153,"infectionDiff":1292,"infectionDiffY":3.53973,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"064_095","label":"SNPs","pAvg":0.00476,"pSD":0.01484,"pScaled":0.00242,"pRank":17,"nSamples":500,"individualID.1":64,"individualID.2":95,"transmission":false,"snpDist":13,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":736,"infectionDiff":724,"infectionDiffY":1.98356,"timeCat":"2","Z1":"0","Z2":"1","Z3":"2","Z4":"2","snpClose":false} {"pairID":"064_096","label":"SNPs","pAvg":0.0024,"pSD":0.00757,"pScaled":0.00084,"pRank":40,"nSamples":500,"individualID.1":64,"individualID.2":96,"transmission":false,"snpDist":13,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":831,"infectionDiff":956,"infectionDiffY":2.61918,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"064_097","label":"SNPs","pAvg":0.00184,"pSD":0.00584,"pScaled":0.00041,"pRank":68,"nSamples":500,"individualID.1":64,"individualID.2":97,"transmission":false,"snpDist":17,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1074,"infectionDiff":1112,"infectionDiffY":3.04658,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"064_098","label":"SNPs","pAvg":0.00054,"pSD":0.00169,"pScaled":0.00015,"pRank":70,"nSamples":500,"individualID.1":64,"individualID.2":98,"transmission":false,"snpDist":17,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":892,"infectionDiff":885,"infectionDiffY":2.42466,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"064_099","label":"SNPs","pAvg":0.01305,"pSD":0.00326,"pScaled":0.00446,"pRank":18,"nSamples":50,"individualID.1":64,"individualID.2":99,"transmission":false,"snpDist":10,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":875,"infectionDiff":749,"infectionDiffY":2.05205,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"064_100","label":"SNPs","pAvg":0.01386,"pSD":0.00534,"pScaled":0.00408,"pRank":32,"nSamples":50,"individualID.1":64,"individualID.2":100,"transmission":false,"snpDist":10,"infectionDate.1":"1996-01-02 21:54:22","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1996-06-26 07:07:21","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1074,"infectionDiff":1127,"infectionDiffY":3.08767,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"065_023","label":"SNPs","pAvg":0.01202,"pSD":0.004,"pScaled":0.00535,"pRank":29,"nSamples":50,"individualID.1":65,"individualID.2":23,"transmission":false,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1245,"infectionDiff":998,"infectionDiffY":2.73425,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"065_026","label":"SNPs","pAvg":0.00575,"pSD":0.01765,"pScaled":0.00202,"pRank":40,"nSamples":500,"individualID.1":65,"individualID.2":26,"transmission":false,"snpDist":11,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":849,"infectionDiff":295,"infectionDiffY":0.80822,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"065_027","label":"SNPs","pAvg":0.01282,"pSD":0.00434,"pScaled":0.00458,"pRank":33,"nSamples":50,"individualID.1":65,"individualID.2":27,"transmission":false,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1022,"infectionDiff":885,"infectionDiffY":2.42466,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"065_033","label":"SNPs","pAvg":0.0021,"pSD":0.00647,"pScaled":0.00096,"pRank":57,"nSamples":500,"individualID.1":65,"individualID.2":33,"transmission":false,"snpDist":13,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":466,"infectionDiff":566,"infectionDiffY":1.55068,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"065_036","label":"SNPs","pAvg":0.0234,"pSD":0.00642,"pScaled":0.00633,"pRank":27,"nSamples":50,"individualID.1":65,"individualID.2":36,"transmission":false,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":228,"infectionDiff":174,"infectionDiffY":0.47671,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"065_040","label":"SNPs","pAvg":0.01451,"pSD":0.00377,"pScaled":0.01298,"pRank":26,"nSamples":500,"individualID.1":65,"individualID.2":40,"transmission":false,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":250,"infectionDiff":430,"infectionDiffY":1.17808,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"065_052","label":"SNPs","pAvg":0.04667,"pSD":0.01336,"pScaled":0.01751,"pRank":7,"nSamples":50,"individualID.1":65,"individualID.2":52,"transmission":false,"snpDist":8,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1094,"infectionDiff":446,"infectionDiffY":1.22192,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"065_054","label":"SNPs","pAvg":0.01464,"pSD":0.00453,"pScaled":0.00381,"pRank":15,"nSamples":50,"individualID.1":65,"individualID.2":54,"transmission":false,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":953,"infectionDiff":835,"infectionDiffY":2.28767,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"065_055","label":"SNPs","pAvg":0.71856,"pSD":0.44805,"pScaled":0.22069,"pRank":3,"nSamples":176,"individualID.1":65,"individualID.2":55,"transmission":false,"snpDist":0,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":-64,"infectionDiff":103,"infectionDiffY":0.28219,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":true} {"pairID":"065_056","label":"SNPs","pAvg":0.68405,"pSD":0.44616,"pScaled":0.16345,"pRank":1,"nSamples":149,"individualID.1":65,"individualID.2":56,"transmission":false,"snpDist":0,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":360,"infectionDiff":187,"infectionDiffY":0.51233,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"065_057","label":"SNPs","pAvg":0.43819,"pSD":0.47957,"pScaled":0.08762,"pRank":8,"nSamples":86,"individualID.1":65,"individualID.2":57,"transmission":false,"snpDist":1,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":923,"infectionDiff":837,"infectionDiffY":2.29315,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"065_058","label":"SNPs","pAvg":0.04616,"pSD":0.01291,"pScaled":0.04555,"pRank":6,"nSamples":500,"individualID.1":65,"individualID.2":58,"transmission":false,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1208,"infectionDiff":526,"infectionDiffY":1.4411,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"065_060","label":"SNPs","pAvg":0.00681,"pSD":0.00216,"pScaled":0.0033,"pRank":51,"nSamples":50,"individualID.1":65,"individualID.2":60,"transmission":false,"snpDist":8,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1249,"infectionDiff":1168,"infectionDiffY":3.2,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"065_061","label":"SNPs","pAvg":0.03999,"pSD":0.00979,"pScaled":0.07594,"pRank":4,"nSamples":500,"individualID.1":65,"individualID.2":61,"transmission":false,"snpDist":7,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1042,"infectionDiff":386,"infectionDiffY":1.05753,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"065_064","label":"SNPs","pAvg":0.7093,"pSD":0.44604,"pScaled":0.26936,"pRank":3,"nSamples":167,"individualID.1":65,"individualID.2":64,"transmission":false,"snpDist":1,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":-8,"infectionDiff":67,"infectionDiffY":0.18356,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":true} {"pairID":"065_066","label":"SNPs","pAvg":0.67092,"pSD":0.46463,"pScaled":0.17717,"pRank":3,"nSamples":149,"individualID.1":65,"individualID.2":66,"transmission":false,"snpDist":1,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":147,"infectionDiff":146,"infectionDiffY":0.4,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"3","snpClose":true} {"pairID":"065_067","label":"SNPs","pAvg":0.01961,"pSD":0.00551,"pScaled":0.00495,"pRank":24,"nSamples":50,"individualID.1":65,"individualID.2":67,"transmission":false,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1269,"infectionDiff":1232,"infectionDiffY":3.37534,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"065_068","label":"SNPs","pAvg":0.00681,"pSD":0.0025,"pScaled":0.00149,"pRank":55,"nSamples":50,"individualID.1":65,"individualID.2":68,"transmission":false,"snpDist":5,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":875,"infectionDiff":884,"infectionDiffY":2.42192,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"065_069","label":"SNPs","pAvg":0.02606,"pSD":0.00885,"pScaled":0.00835,"pRank":13,"nSamples":50,"individualID.1":65,"individualID.2":69,"transmission":false,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":920,"infectionDiff":910,"infectionDiffY":2.49315,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"065_073","label":"SNPs","pAvg":0.05988,"pSD":0.01339,"pScaled":0.0441,"pRank":2,"nSamples":50,"individualID.1":65,"individualID.2":73,"transmission":false,"snpDist":9,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":497,"infectionDiff":257,"infectionDiffY":0.70411,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"065_075","label":"SNPs","pAvg":0.00673,"pSD":0.00214,"pScaled":0.02923,"pRank":14,"nSamples":500,"individualID.1":65,"individualID.2":75,"transmission":false,"snpDist":4,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1003,"infectionDiff":1210,"infectionDiffY":3.31507,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"065_076","label":"SNPs","pAvg":0.01488,"pSD":0.00473,"pScaled":0.00365,"pRank":27,"nSamples":50,"individualID.1":65,"individualID.2":76,"transmission":false,"snpDist":5,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1238,"infectionDiff":884,"infectionDiffY":2.42192,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"065_077","label":"SNPs","pAvg":0.02496,"pSD":0.00722,"pScaled":0.00552,"pRank":18,"nSamples":50,"individualID.1":65,"individualID.2":77,"transmission":false,"snpDist":4,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":391,"infectionDiff":599,"infectionDiffY":1.6411,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"065_078","label":"SNPs","pAvg":0.01104,"pSD":0.00387,"pScaled":0.00245,"pRank":40,"nSamples":50,"individualID.1":65,"individualID.2":78,"transmission":false,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1081,"infectionDiff":912,"infectionDiffY":2.49863,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"065_079","label":"SNPs","pAvg":0.01125,"pSD":0.00218,"pScaled":0.00566,"pRank":12,"nSamples":50,"individualID.1":65,"individualID.2":79,"transmission":false,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":490,"infectionDiff":195,"infectionDiffY":0.53425,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"065_080","label":"SNPs","pAvg":0.0033,"pSD":0.01021,"pScaled":0.02412,"pRank":7,"nSamples":500,"individualID.1":65,"individualID.2":80,"transmission":false,"snpDist":11,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":499,"infectionDiff":127,"infectionDiffY":0.34795,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"065_081","label":"SNPs","pAvg":0.00702,"pSD":0.00266,"pScaled":0.00175,"pRank":33,"nSamples":50,"individualID.1":65,"individualID.2":81,"transmission":false,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1215,"infectionDiff":1294,"infectionDiffY":3.54521,"timeCat":"4","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"065_082","label":"SNPs","pAvg":0.00416,"pSD":0.00137,"pScaled":0.00091,"pRank":77,"nSamples":50,"individualID.1":65,"individualID.2":82,"transmission":false,"snpDist":6,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1219,"infectionDiff":1371,"infectionDiffY":3.75616,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"065_083","label":"SNPs","pAvg":0.00666,"pSD":0.00214,"pScaled":0.00259,"pRank":52,"nSamples":50,"individualID.1":65,"individualID.2":83,"transmission":false,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":995,"infectionDiff":841,"infectionDiffY":2.30411,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"065_084","label":"SNPs","pAvg":0.00066,"pSD":0.00211,"pScaled":0.00034,"pRank":51,"nSamples":500,"individualID.1":65,"individualID.2":84,"transmission":false,"snpDist":17,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1238,"infectionDiff":889,"infectionDiffY":2.43562,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"065_085","label":"SNPs","pAvg":0.00074,"pSD":0.00231,"pScaled":0.00025,"pRank":51,"nSamples":500,"individualID.1":65,"individualID.2":85,"transmission":false,"snpDist":15,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":350,"infectionDiff":554,"infectionDiffY":1.51781,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"065_086","label":"SNPs","pAvg":0.0447,"pSD":0.00861,"pScaled":0.01424,"pRank":6,"nSamples":50,"individualID.1":65,"individualID.2":86,"transmission":false,"snpDist":8,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":188,"infectionDiff":182,"infectionDiffY":0.49863,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"065_087","label":"SNPs","pAvg":0.00424,"pSD":0.01304,"pScaled":0.00346,"pRank":18,"nSamples":500,"individualID.1":65,"individualID.2":87,"transmission":false,"snpDist":12,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":722,"infectionDiff":722,"infectionDiffY":1.97808,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"065_088","label":"SNPs","pAvg":0.00583,"pSD":0.00199,"pScaled":0.00113,"pRank":56,"nSamples":50,"individualID.1":65,"individualID.2":88,"transmission":false,"snpDist":5,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":832,"infectionDiff":1057,"infectionDiffY":2.89589,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"065_089","label":"SNPs","pAvg":0.00058,"pSD":0.00185,"pScaled":0.00019,"pRank":59,"nSamples":500,"individualID.1":65,"individualID.2":89,"transmission":false,"snpDist":16,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1124,"infectionDiff":893,"infectionDiffY":2.44658,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"065_090","label":"SNPs","pAvg":0.00369,"pSD":0.00137,"pScaled":0.00096,"pRank":42,"nSamples":50,"individualID.1":65,"individualID.2":90,"transmission":false,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1194,"infectionDiff":1119,"infectionDiffY":3.06575,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"065_091","label":"SNPs","pAvg":0.00075,"pSD":0.00233,"pScaled":0.00037,"pRank":61,"nSamples":500,"individualID.1":65,"individualID.2":91,"transmission":false,"snpDist":16,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1215,"infectionDiff":711,"infectionDiffY":1.94795,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"065_092","label":"SNPs","pAvg":0.00065,"pSD":0.00207,"pScaled":0.00026,"pRank":54,"nSamples":500,"individualID.1":65,"individualID.2":92,"transmission":false,"snpDist":16,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1262,"infectionDiff":862,"infectionDiffY":2.36164,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"065_093","label":"SNPs","pAvg":0.00062,"pSD":0.00196,"pScaled":0.00017,"pRank":64,"nSamples":500,"individualID.1":65,"individualID.2":93,"transmission":false,"snpDist":17,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1100,"infectionDiff":1087,"infectionDiffY":2.97808,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"065_094","label":"SNPs","pAvg":0.03476,"pSD":0.0092,"pScaled":0.01146,"pRank":9,"nSamples":50,"individualID.1":65,"individualID.2":94,"transmission":false,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1145,"infectionDiff":1359,"infectionDiffY":3.72329,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"065_095","label":"SNPs","pAvg":0.00328,"pSD":0.01016,"pScaled":0.00167,"pRank":22,"nSamples":500,"individualID.1":65,"individualID.2":95,"transmission":false,"snpDist":12,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":728,"infectionDiff":791,"infectionDiffY":2.16712,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"065_096","label":"SNPs","pAvg":0.02933,"pSD":0.00904,"pScaled":0.01027,"pRank":8,"nSamples":50,"individualID.1":65,"individualID.2":96,"transmission":false,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":823,"infectionDiff":1023,"infectionDiffY":2.80274,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"065_097","label":"SNPs","pAvg":0.00372,"pSD":0.00129,"pScaled":0.00083,"pRank":61,"nSamples":50,"individualID.1":65,"individualID.2":97,"transmission":false,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1066,"infectionDiff":1179,"infectionDiffY":3.23014,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"065_098","label":"SNPs","pAvg":0.00111,"pSD":0.00352,"pScaled":0.00032,"pRank":52,"nSamples":500,"individualID.1":65,"individualID.2":98,"transmission":false,"snpDist":16,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":884,"infectionDiff":952,"infectionDiffY":2.60822,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"065_099","label":"SNPs","pAvg":0.05656,"pSD":0.0156,"pScaled":0.01932,"pRank":4,"nSamples":50,"individualID.1":65,"individualID.2":99,"transmission":false,"snpDist":9,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":867,"infectionDiff":816,"infectionDiffY":2.23562,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"065_100","label":"SNPs","pAvg":0.01113,"pSD":0.00322,"pScaled":0.00328,"pRank":35,"nSamples":50,"individualID.1":65,"individualID.2":100,"transmission":false,"infectionDate.1":"1995-10-28 04:44:51","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1996-07-04 07:57:04","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1066,"infectionDiff":1194,"infectionDiffY":3.27123,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"066_023","label":"SNPs","pAvg":0.00706,"pSD":0.02231,"pScaled":0.00314,"pRank":53,"nSamples":500,"individualID.1":66,"individualID.2":23,"transmission":false,"snpDist":13,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1098,"infectionDiff":852,"infectionDiffY":2.33425,"timeCat":"3","Z1":"1","Z2":"1","Z3":"2","Z4":"1","snpClose":false} {"pairID":"066_026","label":"SNPs","pAvg":0.00449,"pSD":0.01411,"pScaled":0.00158,"pRank":45,"nSamples":500,"individualID.1":66,"individualID.2":26,"transmission":false,"snpDist":12,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":703,"infectionDiff":149,"infectionDiffY":0.40822,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"066_027","label":"SNPs","pAvg":0.00425,"pSD":0.01338,"pScaled":0.00152,"pRank":71,"nSamples":500,"individualID.1":66,"individualID.2":27,"transmission":false,"snpDist":11,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":875,"infectionDiff":738,"infectionDiffY":2.02192,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"066_033","label":"SNPs","pAvg":0.00204,"pSD":0.00636,"pScaled":0.00093,"pRank":58,"nSamples":500,"individualID.1":66,"individualID.2":33,"transmission":false,"snpDist":14,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":319,"infectionDiff":420,"infectionDiffY":1.15068,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"066_036","label":"SNPs","pAvg":0.10707,"pSD":0.02167,"pScaled":0.02896,"pRank":4,"nSamples":50,"individualID.1":66,"individualID.2":36,"transmission":false,"snpDist":7,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":81,"infectionDiff":28,"infectionDiffY":0.07671,"timeCat":"1","Z1":"0","Z2":"1","Z3":"2","Z4":"1"} {"pairID":"066_040","label":"SNPs","pAvg":0.08177,"pSD":0.01979,"pScaled":0.07314,"pRank":1,"nSamples":500,"individualID.1":66,"individualID.2":40,"transmission":false,"snpDist":8,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":103,"infectionDiff":284,"infectionDiffY":0.77808,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"066_052","label":"SNPs","pAvg":0.04348,"pSD":0.01215,"pScaled":0.01631,"pRank":8,"nSamples":50,"individualID.1":66,"individualID.2":52,"transmission":false,"snpDist":9,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":947,"infectionDiff":300,"infectionDiffY":0.82192,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"066_054","label":"SNPs","pAvg":0.59857,"pSD":0.48371,"pScaled":0.15586,"pRank":4,"nSamples":122,"individualID.1":66,"individualID.2":54,"transmission":false,"snpDist":1,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":806,"infectionDiff":689,"infectionDiffY":1.88767,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":true} {"pairID":"066_056","label":"SNPs","pAvg":0.44402,"pSD":0.47463,"pScaled":0.1061,"pRank":6,"nSamples":86,"individualID.1":66,"individualID.2":56,"transmission":false,"snpDist":1,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":213,"infectionDiff":41,"infectionDiffY":0.11233,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":true} {"pairID":"066_057","label":"SNPs","pAvg":0.57299,"pSD":0.4815,"pScaled":0.11457,"pRank":3,"nSamples":113,"individualID.1":66,"individualID.2":57,"transmission":false,"snpDist":2,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":776,"infectionDiff":691,"infectionDiffY":1.89315,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":true} {"pairID":"066_058","label":"SNPs","pAvg":0.03429,"pSD":0.00975,"pScaled":0.03384,"pRank":9,"nSamples":500,"individualID.1":66,"individualID.2":58,"transmission":false,"snpDist":5,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1061,"infectionDiff":379,"infectionDiffY":1.03836,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"066_060","label":"SNPs","pAvg":0.04418,"pSD":0.01326,"pScaled":0.02141,"pRank":6,"nSamples":50,"individualID.1":66,"individualID.2":60,"transmission":false,"snpDist":9,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1102,"infectionDiff":1021,"infectionDiffY":2.79726,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"066_061","label":"SNPs","pAvg":0.0084,"pSD":0.00269,"pScaled":0.01595,"pRank":14,"nSamples":500,"individualID.1":66,"individualID.2":61,"transmission":false,"snpDist":8,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":895,"infectionDiff":239,"infectionDiffY":0.65479,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"066_067","label":"SNPs","pAvg":0.02638,"pSD":0.00751,"pScaled":0.00666,"pRank":22,"nSamples":50,"individualID.1":66,"individualID.2":67,"transmission":false,"snpDist":3,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1122,"infectionDiff":1085,"infectionDiffY":2.9726,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"066_068","label":"SNPs","pAvg":0.03506,"pSD":0.01193,"pScaled":0.00766,"pRank":13,"nSamples":50,"individualID.1":66,"individualID.2":68,"transmission":false,"snpDist":6,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":728,"infectionDiff":737,"infectionDiffY":2.01918,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"066_069","label":"SNPs","pAvg":0.00507,"pSD":0.00135,"pScaled":0.00163,"pRank":33,"nSamples":50,"individualID.1":66,"individualID.2":69,"transmission":false,"snpDist":7,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":773,"infectionDiff":764,"infectionDiffY":2.09315,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"066_073","label":"SNPs","pAvg":0.02486,"pSD":0.00671,"pScaled":0.01831,"pRank":5,"nSamples":50,"individualID.1":66,"individualID.2":73,"transmission":false,"snpDist":10,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":350,"infectionDiff":110,"infectionDiffY":0.30137,"timeCat":"1","Z1":"1","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"066_075","label":"SNPs","pAvg":0.01041,"pSD":0.0034,"pScaled":0.04518,"pRank":8,"nSamples":500,"individualID.1":66,"individualID.2":75,"transmission":false,"snpDist":3,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":856,"infectionDiff":1064,"infectionDiffY":2.91507,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"066_076","label":"SNPs","pAvg":0.01444,"pSD":0.00414,"pScaled":0.00354,"pRank":30,"nSamples":50,"individualID.1":66,"individualID.2":76,"transmission":false,"snpDist":6,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1091,"infectionDiff":737,"infectionDiffY":2.01918,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"066_077","label":"SNPs","pAvg":0.01817,"pSD":0.00457,"pScaled":0.00402,"pRank":23,"nSamples":50,"individualID.1":66,"individualID.2":77,"transmission":false,"snpDist":5,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":244,"infectionDiff":452,"infectionDiffY":1.23836,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"066_078","label":"SNPs","pAvg":0.04926,"pSD":0.01175,"pScaled":0.01091,"pRank":9,"nSamples":50,"individualID.1":66,"individualID.2":78,"transmission":false,"snpDist":5,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":935,"infectionDiff":765,"infectionDiffY":2.09589,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"066_079","label":"SNPs","pAvg":0.00244,"pSD":0.00768,"pScaled":0.00123,"pRank":36,"nSamples":500,"individualID.1":66,"individualID.2":79,"transmission":false,"snpDist":16,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":343,"infectionDiff":49,"infectionDiffY":0.13425,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"066_081","label":"SNPs","pAvg":0.00996,"pSD":0.00301,"pScaled":0.00248,"pRank":22,"nSamples":50,"individualID.1":66,"individualID.2":81,"transmission":false,"snpDist":5,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1068,"infectionDiff":1148,"infectionDiffY":3.14521,"timeCat":"4","Z1":"1","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"066_082","label":"SNPs","pAvg":0.01452,"pSD":0.00529,"pScaled":0.00316,"pRank":29,"nSamples":50,"individualID.1":66,"individualID.2":82,"transmission":false,"snpDist":7,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1072,"infectionDiff":1225,"infectionDiffY":3.35616,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"066_083","label":"SNPs","pAvg":0.04893,"pSD":0.01266,"pScaled":0.01904,"pRank":4,"nSamples":50,"individualID.1":66,"individualID.2":83,"transmission":false,"snpDist":7,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":848,"infectionDiff":695,"infectionDiffY":1.90411,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"066_084","label":"SNPs","pAvg":0.00136,"pSD":0.00425,"pScaled":0.00068,"pRank":37,"nSamples":500,"individualID.1":66,"individualID.2":84,"transmission":false,"snpDist":18,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1091,"infectionDiff":743,"infectionDiffY":2.03562,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"066_085","label":"SNPs","pAvg":0.00217,"pSD":0.00676,"pScaled":0.00074,"pRank":26,"nSamples":500,"individualID.1":66,"individualID.2":85,"transmission":false,"snpDist":16,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":203,"infectionDiff":408,"infectionDiffY":1.11781,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"066_086","label":"SNPs","pAvg":0.00877,"pSD":0.00271,"pScaled":0.00279,"pRank":15,"nSamples":50,"individualID.1":66,"individualID.2":86,"transmission":false,"snpDist":9,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":41,"infectionDiff":36,"infectionDiffY":0.09863,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"066_087","label":"SNPs","pAvg":0.00097,"pSD":0.00306,"pScaled":0.00079,"pRank":42,"nSamples":500,"individualID.1":66,"individualID.2":87,"transmission":false,"snpDist":13,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":575,"infectionDiff":575,"infectionDiffY":1.57534,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"066_088","label":"SNPs","pAvg":0.02501,"pSD":0.00601,"pScaled":0.00484,"pRank":16,"nSamples":50,"individualID.1":66,"individualID.2":88,"transmission":false,"snpDist":6,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":685,"infectionDiff":910,"infectionDiffY":2.49315,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"066_089","label":"SNPs","pAvg":0.00158,"pSD":0.00492,"pScaled":0.00051,"pRank":38,"nSamples":500,"individualID.1":66,"individualID.2":89,"transmission":false,"snpDist":17,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":977,"infectionDiff":747,"infectionDiffY":2.04658,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"066_090","label":"SNPs","pAvg":0.00155,"pSD":0.00482,"pScaled":0.0004,"pRank":56,"nSamples":500,"individualID.1":66,"individualID.2":90,"transmission":false,"snpDist":18,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1047,"infectionDiff":973,"infectionDiffY":2.66575,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"066_091","label":"SNPs","pAvg":0.00358,"pSD":0.01109,"pScaled":0.0018,"pRank":31,"nSamples":500,"individualID.1":66,"individualID.2":91,"transmission":false,"snpDist":17,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1068,"infectionDiff":564,"infectionDiffY":1.54521,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"066_092","label":"SNPs","pAvg":0.00183,"pSD":0.00568,"pScaled":0.00074,"pRank":28,"nSamples":500,"individualID.1":66,"individualID.2":92,"transmission":false,"snpDist":17,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1115,"infectionDiff":715,"infectionDiffY":1.9589,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"066_093","label":"SNPs","pAvg":0.0025,"pSD":0.00782,"pScaled":0.00068,"pRank":33,"nSamples":500,"individualID.1":66,"individualID.2":93,"transmission":false,"snpDist":18,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":953,"infectionDiff":941,"infectionDiffY":2.57808,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"066_094","label":"SNPs","pAvg":0.00058,"pSD":0.0019,"pScaled":0.00019,"pRank":82,"nSamples":500,"individualID.1":66,"individualID.2":94,"transmission":false,"snpDist":13,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":998,"infectionDiff":1212,"infectionDiffY":3.32055,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"066_095","label":"SNPs","pAvg":0.00098,"pSD":0.0031,"pScaled":0.0005,"pRank":43,"nSamples":500,"individualID.1":66,"individualID.2":95,"transmission":false,"snpDist":13,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":581,"infectionDiff":644,"infectionDiffY":1.76438,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"066_096","label":"SNPs","pAvg":0.00048,"pSD":0.00153,"pScaled":0.00017,"pRank":71,"nSamples":500,"individualID.1":66,"individualID.2":96,"transmission":false,"snpDist":13,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":676,"infectionDiff":876,"infectionDiffY":2.4,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"066_097","label":"SNPs","pAvg":0.00259,"pSD":0.00799,"pScaled":0.00058,"pRank":66,"nSamples":500,"individualID.1":66,"individualID.2":97,"transmission":false,"snpDist":17,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":919,"infectionDiff":1033,"infectionDiffY":2.83014,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":false} {"pairID":"066_098","label":"SNPs","pAvg":0.00301,"pSD":0.00945,"pScaled":0.00086,"pRank":31,"nSamples":500,"individualID.1":66,"individualID.2":98,"transmission":false,"snpDist":17,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":737,"infectionDiff":805,"infectionDiffY":2.20548,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"066_099","label":"SNPs","pAvg":0.01197,"pSD":0.00398,"pScaled":0.00409,"pRank":19,"nSamples":50,"individualID.1":66,"individualID.2":99,"transmission":false,"snpDist":10,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":720,"infectionDiff":669,"infectionDiffY":1.83288,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"066_100","label":"SNPs","pAvg":0.01234,"pSD":0.00369,"pScaled":0.00364,"pRank":34,"nSamples":50,"individualID.1":66,"individualID.2":100,"transmission":false,"snpDist":10,"infectionDate.1":"1996-03-22 15:36:25","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1996-11-28 06:53:25","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":919,"infectionDiff":1047,"infectionDiffY":2.86849,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"067_081","label":"SNPs","pAvg":0.01953,"pSD":0.00579,"pScaled":0.00486,"pRank":10,"nSamples":50,"individualID.1":67,"individualID.2":81,"transmission":false,"infectionDate.1":"1999-03-13 00:28:54","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-12-24 23:34:19","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":-54,"infectionDiff":62,"infectionDiffY":0.16986,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"067_082","label":"SNPs","pAvg":0.03159,"pSD":0.00605,"pScaled":0.00688,"pRank":13,"nSamples":50,"individualID.1":67,"individualID.2":82,"transmission":false,"snpDist":8,"infectionDate.1":"1999-03-13 00:28:54","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-12-24 23:34:19","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":-50,"infectionDiff":140,"infectionDiffY":0.38356,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"067_094","label":"SNPs","pAvg":0.0616,"pSD":0.01243,"pScaled":0.02031,"pRank":5,"nSamples":50,"individualID.1":67,"individualID.2":94,"transmission":false,"infectionDate.1":"1999-03-13 00:28:54","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-12-24 23:34:19","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":-123,"infectionDiff":127,"infectionDiffY":0.34795,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"068_023","label":"SNPs","pAvg":0.0559,"pSD":0.01314,"pScaled":0.02488,"pRank":6,"nSamples":50,"individualID.1":68,"individualID.2":23,"transmission":false,"snpDist":9,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":370,"infectionDiff":115,"infectionDiffY":0.31507,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"068_027","label":"SNPs","pAvg":0.04534,"pSD":0.01109,"pScaled":0.01619,"pRank":6,"nSamples":50,"individualID.1":68,"individualID.2":27,"transmission":false,"snpDist":7,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":147,"infectionDiff":1,"infectionDiffY":0.00274,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"068_060","label":"SNPs","pAvg":0.04009,"pSD":0.00923,"pScaled":0.01942,"pRank":9,"nSamples":50,"individualID.1":68,"individualID.2":60,"transmission":false,"snpDist":5,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":374,"infectionDiff":284,"infectionDiffY":0.77808,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"068_067","label":"SNPs","pAvg":0.02871,"pSD":0.00702,"pScaled":0.00724,"pRank":18,"nSamples":50,"individualID.1":68,"individualID.2":67,"transmission":false,"snpDist":7,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":394,"infectionDiff":348,"infectionDiffY":0.95342,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"068_069","label":"SNPs","pAvg":0.74619,"pSD":0.43185,"pScaled":0.23923,"pRank":3,"nSamples":194,"individualID.1":68,"individualID.2":69,"transmission":false,"snpDist":1,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":45,"infectionDiff":27,"infectionDiffY":0.07397,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":true} {"pairID":"068_075","label":"SNPs","pAvg":0.0084,"pSD":0.00269,"pScaled":0.03647,"pRank":11,"nSamples":500,"individualID.1":68,"individualID.2":75,"transmission":false,"snpDist":9,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":128,"infectionDiff":327,"infectionDiffY":0.89589,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"068_078","label":"SNPs","pAvg":0.6062,"pSD":0.47455,"pScaled":0.13423,"pRank":4,"nSamples":122,"individualID.1":68,"individualID.2":78,"transmission":false,"snpDist":1,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":207,"infectionDiff":28,"infectionDiffY":0.07671,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":true} {"pairID":"068_081","label":"SNPs","pAvg":0.52388,"pSD":0.4972,"pScaled":0.13047,"pRank":5,"nSamples":104,"individualID.1":68,"individualID.2":81,"transmission":false,"snpDist":1,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":340,"infectionDiff":411,"infectionDiffY":1.12603,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":true} {"pairID":"068_082","label":"SNPs","pAvg":0.06646,"pSD":0.01904,"pScaled":0.01447,"pRank":7,"nSamples":50,"individualID.1":68,"individualID.2":82,"transmission":false,"snpDist":3,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":344,"infectionDiff":488,"infectionDiffY":1.33699,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"068_084","label":"SNPs","pAvg":0.00507,"pSD":0.01571,"pScaled":0.00256,"pRank":12,"nSamples":500,"individualID.1":68,"individualID.2":84,"transmission":false,"snpDist":14,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":363,"infectionDiff":6,"infectionDiffY":0.01644,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"068_088","label":"SNPs","pAvg":0.57483,"pSD":0.47943,"pScaled":0.11123,"pRank":3,"nSamples":113,"individualID.1":68,"individualID.2":88,"transmission":false,"snpDist":2,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-43,"infectionDiff":173,"infectionDiffY":0.47397,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"1","snpClose":true} {"pairID":"068_089","label":"SNPs","pAvg":0.00436,"pSD":0.01365,"pScaled":0.0014,"pRank":21,"nSamples":500,"individualID.1":68,"individualID.2":89,"transmission":false,"snpDist":13,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":249,"infectionDiff":9,"infectionDiffY":0.02466,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"068_090","label":"SNPs","pAvg":0.0045,"pSD":0.01403,"pScaled":0.00117,"pRank":37,"nSamples":500,"individualID.1":68,"individualID.2":90,"transmission":false,"snpDist":14,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":319,"infectionDiff":236,"infectionDiffY":0.64658,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"068_093","label":"SNPs","pAvg":0.00681,"pSD":0.02098,"pScaled":0.00185,"pRank":14,"nSamples":500,"individualID.1":68,"individualID.2":93,"transmission":false,"snpDist":14,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":225,"infectionDiff":204,"infectionDiffY":0.5589,"timeCat":"1","Z1":"0","Z2":"1","Z3":"2","Z4":"2","snpClose":false} {"pairID":"068_094","label":"SNPs","pAvg":0.00702,"pSD":0.0021,"pScaled":0.00232,"pRank":34,"nSamples":50,"individualID.1":68,"individualID.2":94,"transmission":false,"snpDist":9,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":270,"infectionDiff":475,"infectionDiffY":1.30137,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"068_096","label":"SNPs","pAvg":0.01762,"pSD":0.00565,"pScaled":0.00617,"pRank":13,"nSamples":50,"individualID.1":68,"individualID.2":96,"transmission":false,"snpDist":9,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-52,"infectionDiff":139,"infectionDiffY":0.38082,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"068_097","label":"SNPs","pAvg":0.0073,"pSD":0.02269,"pScaled":0.00164,"pRank":39,"nSamples":500,"individualID.1":68,"individualID.2":97,"transmission":false,"snpDist":13,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":191,"infectionDiff":295,"infectionDiffY":0.80822,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":false} {"pairID":"068_098","label":"SNPs","pAvg":0.00233,"pSD":0.00737,"pScaled":0.00066,"pRank":34,"nSamples":500,"individualID.1":68,"individualID.2":98,"transmission":false,"snpDist":13,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":9,"infectionDiff":68,"infectionDiffY":0.1863,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"068_100","label":"SNPs","pAvg":0.02698,"pSD":0.00719,"pScaled":0.00795,"pRank":20,"nSamples":50,"individualID.1":68,"individualID.2":100,"transmission":false,"snpDist":6,"infectionDate.1":"1998-03-29 17:26:23","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1998-11-26 07:03:10","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":191,"infectionDiff":310,"infectionDiffY":0.84932,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"069_023","label":"SNPs","pAvg":0.0133,"pSD":0.00343,"pScaled":0.00592,"pRank":28,"nSamples":50,"individualID.1":69,"individualID.2":23,"transmission":false,"infectionDate.1":"1998-04-25 15:40:02","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1999-01-09 20:59:51","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":326,"infectionDiff":88,"infectionDiffY":0.2411,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"069_060","label":"SNPs","pAvg":0.01125,"pSD":0.00251,"pScaled":0.00545,"pRank":28,"nSamples":50,"individualID.1":69,"individualID.2":60,"transmission":false,"snpDist":6,"infectionDate.1":"1998-04-25 15:40:02","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-01-09 20:59:51","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":330,"infectionDiff":257,"infectionDiffY":0.70411,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"069_067","label":"SNPs","pAvg":0.02741,"pSD":0.00559,"pScaled":0.00692,"pRank":19,"nSamples":50,"individualID.1":69,"individualID.2":67,"transmission":false,"infectionDate.1":"1998-04-25 15:40:02","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-01-09 20:59:51","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":349,"infectionDiff":321,"infectionDiffY":0.87945,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"069_075","label":"SNPs","pAvg":0.01113,"pSD":0.0024,"pScaled":0.04834,"pRank":4,"nSamples":500,"individualID.1":69,"individualID.2":75,"transmission":false,"snpDist":10,"infectionDate.1":"1998-04-25 15:40:02","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-01-09 20:59:51","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":83,"infectionDiff":300,"infectionDiffY":0.82192,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"069_078","label":"SNPs","pAvg":0.01112,"pSD":0.00224,"pScaled":0.00246,"pRank":39,"nSamples":50,"individualID.1":69,"individualID.2":78,"transmission":false,"infectionDate.1":"1998-04-25 15:40:02","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1999-01-09 20:59:51","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":162,"infectionDiff":1,"infectionDiffY":0.00274,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"069_081","label":"SNPs","pAvg":0.00867,"pSD":0.00205,"pScaled":0.00216,"pRank":29,"nSamples":50,"individualID.1":69,"individualID.2":81,"transmission":false,"infectionDate.1":"1998-04-25 15:40:02","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-01-09 20:59:51","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":295,"infectionDiff":384,"infectionDiffY":1.05205,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"069_082","label":"SNPs","pAvg":0.01475,"pSD":0.00344,"pScaled":0.00321,"pRank":26,"nSamples":50,"individualID.1":69,"individualID.2":82,"transmission":false,"snpDist":4,"infectionDate.1":"1998-04-25 15:40:02","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-01-09 20:59:51","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":299,"infectionDiff":461,"infectionDiffY":1.26301,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"069_088","label":"SNPs","pAvg":0.01163,"pSD":0.00247,"pScaled":0.00225,"pRank":27,"nSamples":50,"individualID.1":69,"individualID.2":88,"transmission":false,"snpDist":3,"infectionDate.1":"1998-04-25 15:40:02","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-01-09 20:59:51","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-88,"infectionDiff":146,"infectionDiffY":0.4,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"069_090","label":"SNPs","pAvg":0.02115,"pSD":0.00468,"pScaled":0.00548,"pRank":14,"nSamples":50,"individualID.1":69,"individualID.2":90,"transmission":false,"infectionDate.1":"1998-04-25 15:40:02","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-01-09 20:59:51","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":275,"infectionDiff":209,"infectionDiffY":0.5726,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"069_093","label":"SNPs","pAvg":0.00234,"pSD":0.00731,"pScaled":0.00064,"pRank":36,"nSamples":500,"individualID.1":69,"individualID.2":93,"transmission":false,"snpDist":15,"infectionDate.1":"1998-04-25 15:40:02","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-01-09 20:59:51","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":180,"infectionDiff":177,"infectionDiffY":0.48493,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"069_094","label":"SNPs","pAvg":0.03444,"pSD":0.00797,"pScaled":0.01135,"pRank":10,"nSamples":50,"individualID.1":69,"individualID.2":94,"transmission":false,"infectionDate.1":"1998-04-25 15:40:02","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-01-09 20:59:51","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":226,"infectionDiff":448,"infectionDiffY":1.2274,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"069_096","label":"SNPs","pAvg":0.08297,"pSD":0.01459,"pScaled":0.02906,"pRank":4,"nSamples":50,"individualID.1":69,"individualID.2":96,"transmission":false,"infectionDate.1":"1998-04-25 15:40:02","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-01-09 20:59:51","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-97,"infectionDiff":112,"infectionDiffY":0.30685,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"069_097","label":"SNPs","pAvg":0.02114,"pSD":0.0049,"pScaled":0.00474,"pRank":18,"nSamples":50,"individualID.1":69,"individualID.2":97,"transmission":false,"infectionDate.1":"1998-04-25 15:40:02","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-01-09 20:59:51","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":146,"infectionDiff":269,"infectionDiffY":0.73699,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"069_098","label":"SNPs","pAvg":0.00113,"pSD":0.00346,"pScaled":0.00032,"pRank":49,"nSamples":500,"individualID.1":69,"individualID.2":98,"transmission":false,"snpDist":14,"infectionDate.1":"1998-04-25 15:40:02","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1999-01-09 20:59:51","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":-35,"infectionDiff":41,"infectionDiffY":0.11233,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"069_100","label":"SNPs","pAvg":0.02753,"pSD":0.00522,"pScaled":0.00811,"pRank":15,"nSamples":50,"individualID.1":69,"individualID.2":100,"transmission":false,"infectionDate.1":"1998-04-25 15:40:02","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-01-09 20:59:51","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":147,"infectionDiff":283,"infectionDiffY":0.77534,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"070_009","label":"SNPs","pAvg":0.00274,"pSD":0.00841,"pScaled":0.01222,"pRank":24,"nSamples":500,"individualID.1":70,"individualID.2":9,"transmission":false,"snpDist":15,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1994-05-05 15:46:59","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-06-27 11:49:38","sampleDiff":1632,"infectionDiff":131,"infectionDiffY":0.3589,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"070_023","label":"SNPs","pAvg":0.01543,"pSD":0.00692,"pScaled":0.00687,"pRank":26,"nSamples":50,"individualID.1":70,"individualID.2":23,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1789,"infectionDiff":1670,"infectionDiffY":4.57534,"timeCat":"5","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"070_026","label":"SNPs","pAvg":0.03261,"pSD":0.01014,"pScaled":0.01146,"pRank":6,"nSamples":50,"individualID.1":70,"individualID.2":26,"transmission":false,"snpDist":10,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1393,"infectionDiff":967,"infectionDiffY":2.64932,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"070_027","label":"SNPs","pAvg":0.01687,"pSD":0.00745,"pScaled":0.00602,"pRank":21,"nSamples":50,"individualID.1":70,"individualID.2":27,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1566,"infectionDiff":1557,"infectionDiffY":4.26575,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"070_028","label":"SNPs","pAvg":0.0654,"pSD":0.01311,"pScaled":0.01827,"pRank":6,"nSamples":50,"individualID.1":70,"individualID.2":28,"transmission":false,"snpDist":9,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":783,"infectionDiff":381,"infectionDiffY":1.04384,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"070_033","label":"SNPs","pAvg":0.01009,"pSD":0.00325,"pScaled":0.0046,"pRank":17,"nSamples":50,"individualID.1":70,"individualID.2":33,"transmission":false,"snpDist":4,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":1010,"infectionDiff":1238,"infectionDiffY":3.39178,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"070_035","label":"SNPs","pAvg":0.04532,"pSD":0.00922,"pScaled":0.01178,"pRank":12,"nSamples":50,"individualID.1":70,"individualID.2":35,"transmission":false,"snpDist":9,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1994-01-30 04:24:34","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1997-09-06 01:15:55","sampleDiff":973,"infectionDiff":36,"infectionDiffY":0.09863,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"070_036","label":"SNPs","pAvg":0.05718,"pSD":0.01502,"pScaled":0.01547,"pRank":7,"nSamples":50,"individualID.1":70,"individualID.2":36,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":772,"infectionDiff":846,"infectionDiffY":2.31781,"timeCat":"3","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"070_037","label":"SNPs","pAvg":0.04242,"pSD":0.00977,"pScaled":0.04278,"pRank":8,"nSamples":500,"individualID.1":70,"individualID.2":37,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":1159,"infectionDiff":369,"infectionDiffY":1.01096,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"070_038","label":"SNPs","pAvg":0.05833,"pSD":0.0121,"pScaled":0.06926,"pRank":5,"nSamples":500,"individualID.1":70,"individualID.2":38,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1994-01-07 13:44:53","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1995-08-16 04:42:01","sampleDiff":221,"infectionDiff":13,"infectionDiffY":0.03562,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"070_040","label":"SNPs","pAvg":0.03091,"pSD":0.00824,"pScaled":0.02765,"pRank":9,"nSamples":500,"individualID.1":70,"individualID.2":40,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":794,"infectionDiff":1102,"infectionDiffY":3.01918,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"070_045","label":"SNPs","pAvg":0.02246,"pSD":0.00503,"pScaled":0.01359,"pRank":11,"nSamples":50,"individualID.1":70,"individualID.2":45,"transmission":false,"snpDist":5,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":1168,"infectionDiff":613,"infectionDiffY":1.67945,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"070_047","label":"SNPs","pAvg":0.05574,"pSD":0.01105,"pScaled":0.01202,"pRank":12,"nSamples":50,"individualID.1":70,"individualID.2":47,"transmission":false,"snpDist":3,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":19,"infectionDiff":299,"infectionDiffY":0.81918,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"070_051","label":"SNPs","pAvg":0.04632,"pSD":0.01024,"pScaled":0.02194,"pRank":10,"nSamples":50,"individualID.1":70,"individualID.2":51,"transmission":false,"snpDist":10,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1994-03-25 21:23:15","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1994-06-26 22:12:17","sampleDiff":-195,"infectionDiff":91,"infectionDiffY":0.24932,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"070_052","label":"SNPs","pAvg":0.00217,"pSD":0.00679,"pScaled":0.00082,"pRank":57,"nSamples":500,"individualID.1":70,"individualID.2":52,"transmission":false,"snpDist":11,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1638,"infectionDiff":1118,"infectionDiffY":3.06301,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"070_053","label":"SNPs","pAvg":0.00427,"pSD":0.0131,"pScaled":0.00285,"pRank":33,"nSamples":500,"individualID.1":70,"individualID.2":53,"transmission":false,"snpDist":13,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":326,"infectionDiff":583,"infectionDiffY":1.59726,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"070_054","label":"SNPs","pAvg":0.00448,"pSD":0.00188,"pScaled":0.00117,"pRank":52,"nSamples":50,"individualID.1":70,"individualID.2":54,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1497,"infectionDiff":1507,"infectionDiffY":4.12877,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"070_055","label":"SNPs","pAvg":0.00266,"pSD":0.00841,"pScaled":0.00082,"pRank":45,"nSamples":500,"individualID.1":70,"individualID.2":55,"transmission":false,"snpDist":13,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":480,"infectionDiff":775,"infectionDiffY":2.12329,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"070_056","label":"SNPs","pAvg":0.00339,"pSD":0.01079,"pScaled":0.00081,"pRank":40,"nSamples":500,"individualID.1":70,"individualID.2":56,"transmission":false,"snpDist":13,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":904,"infectionDiff":859,"infectionDiffY":2.35342,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"070_057","label":"SNPs","pAvg":0.00101,"pSD":0.00333,"pScaled":0.0002,"pRank":58,"nSamples":500,"individualID.1":70,"individualID.2":57,"transmission":false,"snpDist":14,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1467,"infectionDiff":1509,"infectionDiffY":4.13425,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"070_058","label":"SNPs","pAvg":0.02137,"pSD":0.00592,"pScaled":0.02109,"pRank":14,"nSamples":500,"individualID.1":70,"individualID.2":58,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1752,"infectionDiff":1198,"infectionDiffY":3.28219,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"070_060","label":"SNPs","pAvg":0.0015,"pSD":0.00462,"pScaled":0.00072,"pRank":69,"nSamples":500,"individualID.1":70,"individualID.2":60,"transmission":false,"snpDist":13,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1793,"infectionDiff":1840,"infectionDiffY":5.0411,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"070_061","label":"SNPs","pAvg":0.00064,"pSD":0.00203,"pScaled":0.00121,"pRank":53,"nSamples":500,"individualID.1":70,"individualID.2":61,"transmission":false,"snpDist":12,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1586,"infectionDiff":1058,"infectionDiffY":2.89863,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"070_064","label":"SNPs","pAvg":0.00168,"pSD":0.00525,"pScaled":0.00064,"pRank":42,"nSamples":500,"individualID.1":70,"individualID.2":64,"transmission":false,"snpDist":14,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":536,"infectionDiff":739,"infectionDiffY":2.02466,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"070_065","label":"SNPs","pAvg":0.01763,"pSD":0.005,"pScaled":0.0136,"pRank":8,"nSamples":50,"individualID.1":70,"individualID.2":65,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":544,"infectionDiff":672,"infectionDiffY":1.8411,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"070_066","label":"SNPs","pAvg":0.00536,"pSD":0.01667,"pScaled":0.00142,"pRank":32,"nSamples":500,"individualID.1":70,"individualID.2":66,"transmission":false,"snpDist":14,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":691,"infectionDiff":818,"infectionDiffY":2.2411,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"1","snpClose":false} {"pairID":"070_067","label":"SNPs","pAvg":0.01022,"pSD":0.00222,"pScaled":0.00258,"pRank":40,"nSamples":50,"individualID.1":70,"individualID.2":67,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1813,"infectionDiff":1904,"infectionDiffY":5.21644,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"070_068","label":"SNPs","pAvg":0.00918,"pSD":0.00397,"pScaled":0.002,"pRank":40,"nSamples":50,"individualID.1":70,"individualID.2":68,"transmission":false,"snpDist":10,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":1419,"infectionDiff":1556,"infectionDiffY":4.26301,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"070_069","label":"SNPs","pAvg":0.00153,"pSD":0.00071,"pScaled":0.00049,"pRank":65,"nSamples":50,"individualID.1":70,"individualID.2":69,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1463,"infectionDiff":1582,"infectionDiffY":4.33425,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"070_071","label":"SNPs","pAvg":0.09407,"pSD":0.01546,"pScaled":0.09571,"pRank":1,"nSamples":500,"individualID.1":70,"individualID.2":71,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":1519,"infectionDiff":259,"infectionDiffY":0.70959,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"070_072","label":"SNPs","pAvg":0.692,"pSD":0.45412,"pScaled":0.21057,"pRank":2,"nSamples":158,"individualID.1":70,"individualID.2":72,"transmission":false,"snpDist":0,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1994-06-20 19:11:11","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1994-11-27 22:42:59","sampleDiff":-41,"infectionDiff":178,"infectionDiffY":0.48767,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"070_073","label":"SNPs","pAvg":0.00107,"pSD":0.00345,"pScaled":0.00079,"pRank":47,"nSamples":500,"individualID.1":70,"individualID.2":73,"transmission":false,"snpDist":12,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":1040,"infectionDiff":929,"infectionDiffY":2.54521,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"070_074","label":"SNPs","pAvg":0.01015,"pSD":0.00231,"pScaled":0.00557,"pRank":4,"nSamples":50,"individualID.1":70,"individualID.2":74,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":881,"infectionDiff":309,"infectionDiffY":0.84658,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"070_075","label":"SNPs","pAvg":0.00031,"pSD":0.00095,"pScaled":0.00133,"pRank":65,"nSamples":500,"individualID.1":70,"individualID.2":75,"transmission":false,"snpDist":17,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1547,"infectionDiff":1882,"infectionDiffY":5.15616,"timeCat":"6","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"070_076","label":"SNPs","pAvg":0.00433,"pSD":0.00164,"pScaled":0.00106,"pRank":62,"nSamples":50,"individualID.1":70,"individualID.2":76,"transmission":false,"snpDist":10,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1782,"infectionDiff":1556,"infectionDiffY":4.26301,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"070_077","label":"SNPs","pAvg":0.01118,"pSD":0.00337,"pScaled":0.00247,"pRank":27,"nSamples":50,"individualID.1":70,"individualID.2":77,"transmission":false,"snpDist":9,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":935,"infectionDiff":1271,"infectionDiffY":3.48219,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"070_078","label":"SNPs","pAvg":0.01333,"pSD":0.00541,"pScaled":0.00295,"pRank":36,"nSamples":50,"individualID.1":70,"individualID.2":78,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1625,"infectionDiff":1584,"infectionDiffY":4.33973,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"070_079","label":"SNPs","pAvg":0.01797,"pSD":0.00572,"pScaled":0.00903,"pRank":6,"nSamples":50,"individualID.1":70,"individualID.2":79,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":1034,"infectionDiff":867,"infectionDiffY":2.37534,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"070_080","label":"SNPs","pAvg":0.00069,"pSD":0.00219,"pScaled":0.00506,"pRank":39,"nSamples":500,"individualID.1":70,"individualID.2":80,"transmission":false,"snpDist":14,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":1043,"infectionDiff":799,"infectionDiffY":2.18904,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"070_081","label":"SNPs","pAvg":0.00329,"pSD":0.00116,"pScaled":0.00082,"pRank":58,"nSamples":50,"individualID.1":70,"individualID.2":81,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1759,"infectionDiff":1966,"infectionDiffY":5.3863,"timeCat":"6","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"070_082","label":"SNPs","pAvg":0.00087,"pSD":0.00269,"pScaled":0.00019,"pRank":91,"nSamples":500,"individualID.1":70,"individualID.2":82,"transmission":false,"snpDist":11,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1763,"infectionDiff":2043,"infectionDiffY":5.59726,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"070_083","label":"SNPs","pAvg":0.00938,"pSD":0.00473,"pScaled":0.00365,"pRank":35,"nSamples":50,"individualID.1":70,"individualID.2":83,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1538,"infectionDiff":1513,"infectionDiffY":4.14521,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"070_084","label":"SNPs","pAvg":0.00507,"pSD":0.00203,"pScaled":0.00256,"pRank":13,"nSamples":50,"individualID.1":70,"individualID.2":84,"transmission":false,"snpDist":4,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1782,"infectionDiff":1561,"infectionDiffY":4.27671,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"070_085","label":"SNPs","pAvg":0.71853,"pSD":0.44809,"pScaled":0.246,"pRank":2,"nSamples":176,"individualID.1":70,"individualID.2":85,"transmission":false,"snpDist":2,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":893,"infectionDiff":1226,"infectionDiffY":3.3589,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"070_086","label":"SNPs","pAvg":0.0005,"pSD":0.00161,"pScaled":0.00016,"pRank":54,"nSamples":500,"individualID.1":70,"individualID.2":86,"transmission":false,"snpDist":11,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":731,"infectionDiff":854,"infectionDiffY":2.33973,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"070_087","label":"SNPs","pAvg":0.00046,"pSD":0.00148,"pScaled":0.00038,"pRank":56,"nSamples":500,"individualID.1":70,"individualID.2":87,"transmission":false,"snpDist":15,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":1266,"infectionDiff":1394,"infectionDiffY":3.81918,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"070_088","label":"SNPs","pAvg":0.00781,"pSD":0.00367,"pScaled":0.00151,"pRank":41,"nSamples":50,"individualID.1":70,"individualID.2":88,"transmission":false,"snpDist":10,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":1376,"infectionDiff":1729,"infectionDiffY":4.73699,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"070_089","label":"SNPs","pAvg":0.00446,"pSD":0.00198,"pScaled":0.00143,"pRank":20,"nSamples":50,"individualID.1":70,"individualID.2":89,"transmission":false,"snpDist":3,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1668,"infectionDiff":1565,"infectionDiffY":4.28767,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"070_090","label":"SNPs","pAvg":0.00455,"pSD":0.0018,"pScaled":0.00118,"pRank":35,"nSamples":50,"individualID.1":70,"individualID.2":90,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1738,"infectionDiff":1791,"infectionDiffY":4.90685,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"070_091","label":"SNPs","pAvg":0.01687,"pSD":0.00646,"pScaled":0.00845,"pRank":5,"nSamples":50,"individualID.1":70,"individualID.2":91,"transmission":false,"snpDist":3,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1759,"infectionDiff":1383,"infectionDiffY":3.78904,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"070_092","label":"SNPs","pAvg":0.00525,"pSD":0.00209,"pScaled":0.00213,"pRank":11,"nSamples":50,"individualID.1":70,"individualID.2":92,"transmission":false,"snpDist":3,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1806,"infectionDiff":1534,"infectionDiffY":4.20274,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"070_093","label":"SNPs","pAvg":0.00496,"pSD":0.00231,"pScaled":0.00135,"pRank":22,"nSamples":50,"individualID.1":70,"individualID.2":93,"transmission":false,"snpDist":4,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1643,"infectionDiff":1759,"infectionDiffY":4.81918,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"070_094","label":"SNPs","pAvg":0.00409,"pSD":0.00099,"pScaled":0.00135,"pRank":40,"nSamples":50,"individualID.1":70,"individualID.2":94,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1689,"infectionDiff":2031,"infectionDiffY":5.56438,"timeCat":"6","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"070_095","label":"SNPs","pAvg":0.00021,"pSD":0.00073,"pScaled":0.00011,"pRank":64,"nSamples":500,"individualID.1":70,"individualID.2":95,"transmission":false,"snpDist":15,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":1272,"infectionDiff":1463,"infectionDiffY":4.00822,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"070_096","label":"SNPs","pAvg":0.00195,"pSD":0.00086,"pScaled":0.00068,"pRank":49,"nSamples":50,"individualID.1":70,"individualID.2":96,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":1366,"infectionDiff":1695,"infectionDiffY":4.64384,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"070_097","label":"SNPs","pAvg":0.00837,"pSD":0.00217,"pScaled":0.00188,"pRank":29,"nSamples":50,"individualID.1":70,"individualID.2":97,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1609,"infectionDiff":1851,"infectionDiffY":5.07123,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"070_098","label":"SNPs","pAvg":0.00868,"pSD":0.00323,"pScaled":0.00246,"pRank":12,"nSamples":50,"individualID.1":70,"individualID.2":98,"transmission":false,"snpDist":3,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":1428,"infectionDiff":1624,"infectionDiffY":4.44932,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"070_099","label":"SNPs","pAvg":0.00035,"pSD":0.00116,"pScaled":0.00012,"pRank":65,"nSamples":500,"individualID.1":70,"individualID.2":99,"transmission":false,"snpDist":12,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":1411,"infectionDiff":1488,"infectionDiffY":4.07671,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"070_100","label":"SNPs","pAvg":0.00547,"pSD":0.00121,"pScaled":0.00161,"pRank":58,"nSamples":50,"individualID.1":70,"individualID.2":100,"transmission":false,"infectionDate.1":"1993-12-25 05:01:42","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1995-01-07 11:11:12","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1610,"infectionDiff":1866,"infectionDiffY":5.11233,"timeCat":"6","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"071_023","label":"SNPs","pAvg":0.0343,"pSD":0.00875,"pScaled":0.01527,"pRank":14,"nSamples":50,"individualID.1":71,"individualID.2":23,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":271,"infectionDiff":1412,"infectionDiffY":3.86849,"timeCat":"4","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"071_026","label":"SNPs","pAvg":0.00457,"pSD":0.01426,"pScaled":0.00161,"pRank":44,"nSamples":500,"individualID.1":71,"individualID.2":26,"transmission":false,"snpDist":14,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":-125,"infectionDiff":709,"infectionDiffY":1.94247,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"071_027","label":"SNPs","pAvg":0.03431,"pSD":0.00878,"pScaled":0.01225,"pRank":10,"nSamples":50,"individualID.1":71,"individualID.2":27,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":47,"infectionDiff":1298,"infectionDiffY":3.55616,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"071_028","label":"SNPs","pAvg":0.00872,"pSD":0.02679,"pScaled":0.00243,"pRank":42,"nSamples":500,"individualID.1":71,"individualID.2":28,"transmission":false,"snpDist":13,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":-736,"infectionDiff":123,"infectionDiffY":0.33699,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"1","snpClose":false} {"pairID":"071_033","label":"SNPs","pAvg":0.01574,"pSD":0.00486,"pScaled":0.00718,"pRank":9,"nSamples":50,"individualID.1":71,"individualID.2":33,"transmission":false,"snpDist":8,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":-508,"infectionDiff":980,"infectionDiffY":2.68493,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"071_036","label":"SNPs","pAvg":0.08057,"pSD":0.01896,"pScaled":0.02179,"pRank":6,"nSamples":50,"individualID.1":71,"individualID.2":36,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":-747,"infectionDiff":588,"infectionDiffY":1.61096,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"071_037","label":"SNPs","pAvg":0.05449,"pSD":0.01283,"pScaled":0.05494,"pRank":5,"nSamples":500,"individualID.1":71,"individualID.2":37,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":-360,"infectionDiff":110,"infectionDiffY":0.30137,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"071_040","label":"SNPs","pAvg":0.04857,"pSD":0.01426,"pScaled":0.04344,"pRank":7,"nSamples":500,"individualID.1":71,"individualID.2":40,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":-724,"infectionDiff":844,"infectionDiffY":2.31233,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"071_045","label":"SNPs","pAvg":0.02823,"pSD":0.00633,"pScaled":0.01709,"pRank":9,"nSamples":50,"individualID.1":71,"individualID.2":45,"transmission":false,"snpDist":9,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":-351,"infectionDiff":355,"infectionDiffY":0.9726,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"071_047","label":"SNPs","pAvg":0.05574,"pSD":0.01105,"pScaled":0.01202,"pRank":12,"nSamples":50,"individualID.1":71,"individualID.2":47,"transmission":false,"snpDist":7,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":-1500,"infectionDiff":40,"infectionDiffY":0.10959,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"071_052","label":"SNPs","pAvg":0.00323,"pSD":0.0102,"pScaled":0.00121,"pRank":54,"nSamples":500,"individualID.1":71,"individualID.2":52,"transmission":false,"snpDist":15,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":120,"infectionDiff":860,"infectionDiffY":2.35616,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"071_053","label":"SNPs","pAvg":0.00519,"pSD":0.01595,"pScaled":0.00347,"pRank":29,"nSamples":500,"individualID.1":71,"individualID.2":53,"transmission":false,"snpDist":17,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":-1193,"infectionDiff":324,"infectionDiffY":0.88767,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"071_054","label":"SNPs","pAvg":0.01002,"pSD":0.00294,"pScaled":0.00261,"pRank":17,"nSamples":50,"individualID.1":71,"individualID.2":54,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":-22,"infectionDiff":1249,"infectionDiffY":3.42192,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"071_055","label":"SNPs","pAvg":0.00357,"pSD":0.01101,"pScaled":0.0011,"pRank":43,"nSamples":500,"individualID.1":71,"individualID.2":55,"transmission":false,"snpDist":17,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":-1039,"infectionDiff":516,"infectionDiffY":1.4137,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"071_056","label":"SNPs","pAvg":0.00458,"pSD":0.01441,"pScaled":0.00109,"pRank":34,"nSamples":500,"individualID.1":71,"individualID.2":56,"transmission":false,"snpDist":17,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":-615,"infectionDiff":601,"infectionDiffY":1.64658,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"071_057","label":"SNPs","pAvg":0.00216,"pSD":0.00674,"pScaled":0.00043,"pRank":49,"nSamples":500,"individualID.1":71,"individualID.2":57,"transmission":false,"snpDist":18,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":-52,"infectionDiff":1251,"infectionDiffY":3.4274,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"071_058","label":"SNPs","pAvg":0.03387,"pSD":0.01072,"pScaled":0.03342,"pRank":10,"nSamples":500,"individualID.1":71,"individualID.2":58,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":233,"infectionDiff":939,"infectionDiffY":2.5726,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"071_060","label":"SNPs","pAvg":0.00144,"pSD":0.0048,"pScaled":0.0007,"pRank":71,"nSamples":500,"individualID.1":71,"individualID.2":60,"transmission":false,"snpDist":17,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":275,"infectionDiff":1581,"infectionDiffY":4.33151,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"071_061","label":"SNPs","pAvg":0.00063,"pSD":0.00198,"pScaled":0.0012,"pRank":54,"nSamples":500,"individualID.1":71,"individualID.2":61,"transmission":false,"snpDist":16,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":68,"infectionDiff":799,"infectionDiffY":2.18904,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"071_064","label":"SNPs","pAvg":0.00223,"pSD":0.00687,"pScaled":0.00085,"pRank":38,"nSamples":500,"individualID.1":71,"individualID.2":64,"transmission":false,"snpDist":18,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":-983,"infectionDiff":480,"infectionDiffY":1.31507,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"071_065","label":"SNPs","pAvg":0.01763,"pSD":0.005,"pScaled":0.0136,"pRank":8,"nSamples":50,"individualID.1":71,"individualID.2":65,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":-975,"infectionDiff":413,"infectionDiffY":1.13151,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"071_066","label":"SNPs","pAvg":0.00702,"pSD":0.02172,"pScaled":0.00185,"pRank":30,"nSamples":500,"individualID.1":71,"individualID.2":66,"transmission":false,"snpDist":18,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":-828,"infectionDiff":560,"infectionDiffY":1.53425,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"1","snpClose":false} {"pairID":"071_067","label":"SNPs","pAvg":0.00979,"pSD":0.00426,"pScaled":0.00247,"pRank":45,"nSamples":50,"individualID.1":71,"individualID.2":67,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":294,"infectionDiff":1645,"infectionDiffY":4.50685,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"071_068","label":"SNPs","pAvg":0.00208,"pSD":0.00655,"pScaled":0.00045,"pRank":75,"nSamples":500,"individualID.1":71,"individualID.2":68,"transmission":false,"snpDist":14,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":-100,"infectionDiff":1297,"infectionDiffY":3.55342,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"071_069","label":"SNPs","pAvg":0.00328,"pSD":0.0013,"pScaled":0.00105,"pRank":46,"nSamples":50,"individualID.1":71,"individualID.2":69,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":-55,"infectionDiff":1324,"infectionDiffY":3.6274,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"071_073","label":"SNPs","pAvg":0.00157,"pSD":0.00492,"pScaled":0.00115,"pRank":45,"nSamples":500,"individualID.1":71,"individualID.2":73,"transmission":false,"snpDist":16,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":-478,"infectionDiff":670,"infectionDiffY":1.83562,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"071_074","label":"SNPs","pAvg":0.01015,"pSD":0.00231,"pScaled":0.00557,"pRank":4,"nSamples":50,"individualID.1":71,"individualID.2":74,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":-638,"infectionDiff":50,"infectionDiffY":0.13699,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"071_075","label":"SNPs","pAvg":0.0003,"pSD":0.00101,"pScaled":0.00131,"pRank":68,"nSamples":500,"individualID.1":71,"individualID.2":75,"transmission":false,"snpDist":21,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":28,"infectionDiff":1624,"infectionDiffY":4.44932,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"071_076","label":"SNPs","pAvg":0.00095,"pSD":0.00303,"pScaled":0.00023,"pRank":75,"nSamples":500,"individualID.1":71,"individualID.2":76,"transmission":false,"snpDist":14,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":263,"infectionDiff":1297,"infectionDiffY":3.55342,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"071_077","label":"SNPs","pAvg":0.00179,"pSD":0.00565,"pScaled":0.0004,"pRank":65,"nSamples":500,"individualID.1":71,"individualID.2":77,"transmission":false,"snpDist":13,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":-584,"infectionDiff":1012,"infectionDiffY":2.7726,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"071_078","label":"SNPs","pAvg":0.03181,"pSD":0.00846,"pScaled":0.00704,"pRank":18,"nSamples":50,"individualID.1":71,"individualID.2":78,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":107,"infectionDiff":1325,"infectionDiffY":3.63014,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"071_079","label":"SNPs","pAvg":0.02377,"pSD":0.00673,"pScaled":0.01195,"pRank":4,"nSamples":50,"individualID.1":71,"individualID.2":79,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":-485,"infectionDiff":609,"infectionDiffY":1.66849,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"071_080","label":"SNPs","pAvg":0.00093,"pSD":0.00289,"pScaled":0.00676,"pRank":31,"nSamples":500,"individualID.1":71,"individualID.2":80,"transmission":false,"snpDist":18,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":-476,"infectionDiff":541,"infectionDiffY":1.48219,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"071_081","label":"SNPs","pAvg":0.00324,"pSD":0.00171,"pScaled":0.00081,"pRank":67,"nSamples":50,"individualID.1":71,"individualID.2":81,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":240,"infectionDiff":1708,"infectionDiffY":4.67945,"timeCat":"5","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"071_082","label":"SNPs","pAvg":0.00089,"pSD":0.0029,"pScaled":0.00019,"pRank":89,"nSamples":500,"individualID.1":71,"individualID.2":82,"transmission":false,"snpDist":15,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":244,"infectionDiff":1785,"infectionDiffY":4.89041,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"071_083","label":"SNPs","pAvg":0.02054,"pSD":0.00507,"pScaled":0.00799,"pRank":18,"nSamples":50,"individualID.1":71,"individualID.2":83,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":20,"infectionDiff":1255,"infectionDiffY":3.43836,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"071_084","label":"SNPs","pAvg":0.0118,"pSD":0.0032,"pScaled":0.00595,"pRank":7,"nSamples":50,"individualID.1":71,"individualID.2":84,"transmission":false,"snpDist":8,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":263,"infectionDiff":1303,"infectionDiffY":3.56986,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"071_085","label":"SNPs","pAvg":0.01496,"pSD":0.0049,"pScaled":0.00512,"pRank":5,"nSamples":50,"individualID.1":71,"individualID.2":85,"transmission":false,"snpDist":6,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":-625,"infectionDiff":968,"infectionDiffY":2.65205,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"071_086","label":"SNPs","pAvg":0.00069,"pSD":0.00214,"pScaled":0.00022,"pRank":53,"nSamples":500,"individualID.1":71,"individualID.2":86,"transmission":false,"snpDist":15,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":-787,"infectionDiff":596,"infectionDiffY":1.63288,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"071_087","label":"SNPs","pAvg":0.00046,"pSD":0.00148,"pScaled":0.00038,"pRank":56,"nSamples":500,"individualID.1":71,"individualID.2":87,"transmission":false,"snpDist":19,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":-252,"infectionDiff":1135,"infectionDiffY":3.10959,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"071_088","label":"SNPs","pAvg":0.00078,"pSD":0.00261,"pScaled":0.00015,"pRank":86,"nSamples":500,"individualID.1":71,"individualID.2":88,"transmission":false,"snpDist":14,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-143,"infectionDiff":1470,"infectionDiffY":4.0274,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"071_089","label":"SNPs","pAvg":0.00981,"pSD":0.00317,"pScaled":0.00315,"pRank":8,"nSamples":50,"individualID.1":71,"individualID.2":89,"transmission":false,"snpDist":7,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":149,"infectionDiff":1306,"infectionDiffY":3.57808,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"071_090","label":"SNPs","pAvg":0.00455,"pSD":0.0018,"pScaled":0.00118,"pRank":35,"nSamples":50,"individualID.1":71,"individualID.2":90,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":220,"infectionDiff":1533,"infectionDiffY":4.2,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"071_091","label":"SNPs","pAvg":0.01687,"pSD":0.00646,"pScaled":0.00845,"pRank":5,"nSamples":50,"individualID.1":71,"individualID.2":91,"transmission":false,"snpDist":7,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":241,"infectionDiff":1124,"infectionDiffY":3.07945,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"071_092","label":"SNPs","pAvg":0.01168,"pSD":0.00364,"pScaled":0.00474,"pRank":6,"nSamples":50,"individualID.1":71,"individualID.2":92,"transmission":false,"snpDist":7,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":288,"infectionDiff":1275,"infectionDiffY":3.49315,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"071_093","label":"SNPs","pAvg":0.00496,"pSD":0.00231,"pScaled":0.00135,"pRank":22,"nSamples":50,"individualID.1":71,"individualID.2":93,"transmission":false,"snpDist":8,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":125,"infectionDiff":1501,"infectionDiffY":4.11233,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"071_094","label":"SNPs","pAvg":0.00389,"pSD":0.00172,"pScaled":0.00128,"pRank":45,"nSamples":50,"individualID.1":71,"individualID.2":94,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":171,"infectionDiff":1772,"infectionDiffY":4.85479,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"071_095","label":"SNPs","pAvg":0.00048,"pSD":0.00154,"pScaled":0.00024,"pRank":56,"nSamples":500,"individualID.1":71,"individualID.2":95,"transmission":false,"snpDist":19,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":-247,"infectionDiff":1204,"infectionDiffY":3.29863,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"071_096","label":"SNPs","pAvg":0.00425,"pSD":0.00127,"pScaled":0.00149,"pRank":33,"nSamples":50,"individualID.1":71,"individualID.2":96,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-152,"infectionDiff":1436,"infectionDiffY":3.93425,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"071_097","label":"SNPs","pAvg":0.00773,"pSD":0.00328,"pScaled":0.00173,"pRank":38,"nSamples":50,"individualID.1":71,"individualID.2":97,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":91,"infectionDiff":1592,"infectionDiffY":4.36164,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"071_098","label":"SNPs","pAvg":0.01904,"pSD":0.00534,"pScaled":0.00541,"pRank":7,"nSamples":50,"individualID.1":71,"individualID.2":98,"transmission":false,"snpDist":7,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":-90,"infectionDiff":1365,"infectionDiffY":3.73973,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"071_099","label":"SNPs","pAvg":0.00067,"pSD":0.00211,"pScaled":0.00023,"pRank":63,"nSamples":500,"individualID.1":71,"individualID.2":99,"transmission":false,"snpDist":16,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":-108,"infectionDiff":1229,"infectionDiffY":3.36712,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"071_100","label":"SNPs","pAvg":0.00456,"pSD":0.00224,"pScaled":0.00134,"pRank":67,"nSamples":50,"individualID.1":71,"individualID.2":100,"transmission":false,"infectionDate.1":"1994-09-09 19:04:39","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-03-06 01:28:06","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":92,"infectionDiff":1607,"infectionDiffY":4.40274,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"072_023","label":"SNPs","pAvg":0.00057,"pSD":0.00188,"pScaled":0.00025,"pRank":85,"nSamples":500,"individualID.1":72,"individualID.2":23,"transmission":false,"snpDist":11,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1830,"infectionDiff":1493,"infectionDiffY":4.09041,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"072_026","label":"SNPs","pAvg":0.00555,"pSD":0.00178,"pScaled":0.00195,"pRank":41,"nSamples":50,"individualID.1":72,"individualID.2":26,"transmission":false,"snpDist":10,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":1434,"infectionDiff":790,"infectionDiffY":2.16438,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"072_027","label":"SNPs","pAvg":0.00941,"pSD":0.00277,"pScaled":0.00336,"pRank":39,"nSamples":50,"individualID.1":72,"individualID.2":27,"transmission":false,"snpDist":9,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":1606,"infectionDiff":1379,"infectionDiffY":3.77808,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"072_028","label":"SNPs","pAvg":0.03404,"pSD":0.00754,"pScaled":0.00951,"pRank":22,"nSamples":50,"individualID.1":72,"individualID.2":28,"transmission":false,"snpDist":9,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":823,"infectionDiff":204,"infectionDiffY":0.5589,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"072_033","label":"SNPs","pAvg":0.0064,"pSD":0.0024,"pScaled":0.00292,"pRank":30,"nSamples":50,"individualID.1":72,"individualID.2":33,"transmission":false,"snpDist":4,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":1051,"infectionDiff":1061,"infectionDiffY":2.90685,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"072_036","label":"SNPs","pAvg":0.02224,"pSD":0.00407,"pScaled":0.00601,"pRank":28,"nSamples":50,"individualID.1":72,"individualID.2":36,"transmission":false,"snpDist":9,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":812,"infectionDiff":669,"infectionDiffY":1.83288,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"072_037","label":"SNPs","pAvg":0.0012,"pSD":0.00369,"pScaled":0.00121,"pRank":47,"nSamples":500,"individualID.1":72,"individualID.2":37,"transmission":false,"snpDist":13,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":1199,"infectionDiff":191,"infectionDiffY":0.52329,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"072_040","label":"SNPs","pAvg":0.00181,"pSD":0.00565,"pScaled":0.00162,"pRank":59,"nSamples":500,"individualID.1":72,"individualID.2":40,"transmission":false,"snpDist":12,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":835,"infectionDiff":925,"infectionDiffY":2.53425,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"072_045","label":"SNPs","pAvg":0.01877,"pSD":0.00498,"pScaled":0.01136,"pRank":16,"nSamples":50,"individualID.1":72,"individualID.2":45,"transmission":false,"snpDist":5,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":1208,"infectionDiff":436,"infectionDiffY":1.19452,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"072_047","label":"SNPs","pAvg":0.05551,"pSD":0.01458,"pScaled":0.01197,"pRank":14,"nSamples":50,"individualID.1":72,"individualID.2":47,"transmission":false,"snpDist":3,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1994-10-20 06:41:42","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1995-01-26 03:24:26","sampleDiff":59,"infectionDiff":121,"infectionDiffY":0.33151,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"072_052","label":"SNPs","pAvg":0.00053,"pSD":0.00169,"pScaled":0.0002,"pRank":65,"nSamples":500,"individualID.1":72,"individualID.2":52,"transmission":false,"snpDist":11,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":1679,"infectionDiff":941,"infectionDiffY":2.57808,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"072_053","label":"SNPs","pAvg":0.0009,"pSD":0.00281,"pScaled":0.0006,"pRank":48,"nSamples":500,"individualID.1":72,"individualID.2":53,"transmission":false,"snpDist":13,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":366,"infectionDiff":405,"infectionDiffY":1.10959,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"072_054","label":"SNPs","pAvg":0.00041,"pSD":0.0013,"pScaled":0.00011,"pRank":72,"nSamples":500,"individualID.1":72,"individualID.2":54,"transmission":false,"snpDist":13,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":1537,"infectionDiff":1330,"infectionDiffY":3.64384,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"072_055","label":"SNPs","pAvg":0.00455,"pSD":0.01427,"pScaled":0.0014,"pRank":37,"nSamples":500,"individualID.1":72,"individualID.2":55,"transmission":false,"snpDist":13,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":521,"infectionDiff":597,"infectionDiffY":1.63562,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"072_056","label":"SNPs","pAvg":0.00072,"pSD":0.00224,"pScaled":0.00017,"pRank":58,"nSamples":500,"individualID.1":72,"individualID.2":56,"transmission":false,"snpDist":13,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":944,"infectionDiff":682,"infectionDiffY":1.86849,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"072_057","label":"SNPs","pAvg":0.00036,"pSD":0.00115,"pScaled":0.00007,"pRank":75,"nSamples":500,"individualID.1":72,"individualID.2":57,"transmission":false,"snpDist":14,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":1507,"infectionDiff":1332,"infectionDiffY":3.64932,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"072_058","label":"SNPs","pAvg":0.00055,"pSD":0.00176,"pScaled":0.00054,"pRank":64,"nSamples":500,"individualID.1":72,"individualID.2":58,"transmission":false,"snpDist":15,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1792,"infectionDiff":1020,"infectionDiffY":2.79452,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"072_060","label":"SNPs","pAvg":0.0005,"pSD":0.00163,"pScaled":0.00024,"pRank":88,"nSamples":500,"individualID.1":72,"individualID.2":60,"transmission":false,"snpDist":13,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1834,"infectionDiff":1662,"infectionDiffY":4.55342,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"072_061","label":"SNPs","pAvg":0.00057,"pSD":0.00182,"pScaled":0.00108,"pRank":55,"nSamples":500,"individualID.1":72,"individualID.2":61,"transmission":false,"snpDist":12,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":1627,"infectionDiff":880,"infectionDiffY":2.41096,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"072_064","label":"SNPs","pAvg":0.00091,"pSD":0.00283,"pScaled":0.00035,"pRank":50,"nSamples":500,"individualID.1":72,"individualID.2":64,"transmission":false,"snpDist":14,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":576,"infectionDiff":561,"infectionDiffY":1.53699,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"072_065","label":"SNPs","pAvg":0.00076,"pSD":0.00237,"pScaled":0.00059,"pRank":47,"nSamples":500,"individualID.1":72,"individualID.2":65,"transmission":false,"snpDist":13,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":584,"infectionDiff":494,"infectionDiffY":1.35342,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"072_066","label":"SNPs","pAvg":0.00249,"pSD":0.0077,"pScaled":0.00066,"pRank":44,"nSamples":500,"individualID.1":72,"individualID.2":66,"transmission":false,"snpDist":14,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":731,"infectionDiff":641,"infectionDiffY":1.75616,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"072_067","label":"SNPs","pAvg":0.00016,"pSD":0.00052,"pScaled":0.00004,"pRank":96,"nSamples":500,"individualID.1":72,"individualID.2":67,"transmission":false,"snpDist":15,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1853,"infectionDiff":1726,"infectionDiffY":4.72877,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"072_068","label":"SNPs","pAvg":0.01049,"pSD":0.00334,"pScaled":0.00229,"pRank":34,"nSamples":50,"individualID.1":72,"individualID.2":68,"transmission":false,"snpDist":10,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":1459,"infectionDiff":1378,"infectionDiffY":3.77534,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"072_069","label":"SNPs","pAvg":0.00037,"pSD":0.00121,"pScaled":0.00012,"pRank":81,"nSamples":500,"individualID.1":72,"individualID.2":69,"transmission":false,"snpDist":11,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":1504,"infectionDiff":1405,"infectionDiffY":3.84932,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"072_071","label":"SNPs","pAvg":0.02681,"pSD":0.00545,"pScaled":0.02728,"pRank":17,"nSamples":500,"individualID.1":72,"individualID.2":71,"transmission":false,"snpDist":4,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1994-09-09 19:04:39","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-03-06 01:28:06","sampleDiff":1559,"infectionDiff":81,"infectionDiffY":0.22192,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"072_073","label":"SNPs","pAvg":0.0006,"pSD":0.00193,"pScaled":0.00044,"pRank":53,"nSamples":500,"individualID.1":72,"individualID.2":73,"transmission":false,"snpDist":12,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":1081,"infectionDiff":751,"infectionDiffY":2.05753,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"072_074","label":"SNPs","pAvg":0.00086,"pSD":0.00268,"pScaled":0.00047,"pRank":43,"nSamples":500,"individualID.1":72,"individualID.2":74,"transmission":false,"snpDist":11,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1994-10-30 04:54:20","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1997-06-06 01:47:02","sampleDiff":921,"infectionDiff":131,"infectionDiffY":0.3589,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"072_075","label":"SNPs","pAvg":0.00017,"pSD":0.00058,"pScaled":0.00075,"pRank":79,"nSamples":500,"individualID.1":72,"individualID.2":75,"transmission":false,"snpDist":17,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":1587,"infectionDiff":1705,"infectionDiffY":4.67123,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"072_076","label":"SNPs","pAvg":0.00767,"pSD":0.0023,"pScaled":0.00188,"pRank":46,"nSamples":50,"individualID.1":72,"individualID.2":76,"transmission":false,"snpDist":10,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1822,"infectionDiff":1378,"infectionDiffY":3.77534,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"072_077","label":"SNPs","pAvg":0.00532,"pSD":0.00173,"pScaled":0.00118,"pRank":49,"nSamples":50,"individualID.1":72,"individualID.2":77,"transmission":false,"snpDist":9,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":975,"infectionDiff":1093,"infectionDiffY":2.99452,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"072_078","label":"SNPs","pAvg":0.01094,"pSD":0.00309,"pScaled":0.00242,"pRank":41,"nSamples":50,"individualID.1":72,"individualID.2":78,"transmission":false,"snpDist":9,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":1666,"infectionDiff":1406,"infectionDiffY":3.85205,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"072_079","label":"SNPs","pAvg":0.80499,"pSD":0.38886,"pScaled":0.40472,"pRank":2,"nSamples":248,"individualID.1":72,"individualID.2":79,"transmission":true,"snpDist":2,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":1074,"infectionDiff":690,"infectionDiffY":1.89041,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"072_080","label":"SNPs","pAvg":0.00079,"pSD":0.00244,"pScaled":0.00574,"pRank":36,"nSamples":500,"individualID.1":72,"individualID.2":80,"transmission":false,"snpDist":14,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":1083,"infectionDiff":622,"infectionDiffY":1.70411,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"072_081","label":"SNPs","pAvg":0.00183,"pSD":0.00088,"pScaled":0.00046,"pRank":85,"nSamples":50,"individualID.1":72,"individualID.2":81,"transmission":false,"snpDist":9,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1799,"infectionDiff":1789,"infectionDiffY":4.90137,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"072_082","label":"SNPs","pAvg":0.00045,"pSD":0.00139,"pScaled":0.0001,"pRank":96,"nSamples":500,"individualID.1":72,"individualID.2":82,"transmission":false,"snpDist":11,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1803,"infectionDiff":1866,"infectionDiffY":5.11233,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"072_083","label":"SNPs","pAvg":0.00108,"pSD":0.00346,"pScaled":0.00042,"pRank":72,"nSamples":500,"individualID.1":72,"individualID.2":83,"transmission":false,"snpDist":11,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":1579,"infectionDiff":1336,"infectionDiffY":3.66027,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"072_084","label":"SNPs","pAvg":0.0163,"pSD":0.00472,"pScaled":0.00822,"pRank":6,"nSamples":50,"individualID.1":72,"individualID.2":84,"transmission":false,"snpDist":4,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1822,"infectionDiff":1384,"infectionDiffY":3.79178,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"072_085","label":"SNPs","pAvg":0.6294,"pSD":0.47353,"pScaled":0.21549,"pRank":3,"nSamples":131,"individualID.1":72,"individualID.2":85,"transmission":false,"snpDist":2,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":934,"infectionDiff":1049,"infectionDiffY":2.87397,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"072_086","label":"SNPs","pAvg":0.00078,"pSD":0.00244,"pScaled":0.00025,"pRank":52,"nSamples":500,"individualID.1":72,"individualID.2":86,"transmission":false,"snpDist":11,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":772,"infectionDiff":677,"infectionDiffY":1.85479,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"072_087","label":"SNPs","pAvg":0.00042,"pSD":0.00137,"pScaled":0.00035,"pRank":58,"nSamples":500,"individualID.1":72,"individualID.2":87,"transmission":false,"snpDist":15,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":1307,"infectionDiff":1216,"infectionDiffY":3.33151,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"072_088","label":"SNPs","pAvg":0.00523,"pSD":0.00227,"pScaled":0.00101,"pRank":58,"nSamples":50,"individualID.1":72,"individualID.2":88,"transmission":false,"snpDist":10,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":1416,"infectionDiff":1551,"infectionDiffY":4.24932,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"072_089","label":"SNPs","pAvg":0.01866,"pSD":0.00523,"pScaled":0.00599,"pRank":7,"nSamples":50,"individualID.1":72,"individualID.2":89,"transmission":false,"snpDist":3,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":1708,"infectionDiff":1387,"infectionDiffY":3.8,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"072_090","label":"SNPs","pAvg":0.00859,"pSD":0.00368,"pScaled":0.00223,"pRank":20,"nSamples":50,"individualID.1":72,"individualID.2":90,"transmission":false,"snpDist":4,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1779,"infectionDiff":1614,"infectionDiffY":4.42192,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"072_091","label":"SNPs","pAvg":0.01133,"pSD":0.004,"pScaled":0.00568,"pRank":10,"nSamples":50,"individualID.1":72,"individualID.2":91,"transmission":false,"snpDist":3,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1800,"infectionDiff":1205,"infectionDiffY":3.30137,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"072_092","label":"SNPs","pAvg":0.01615,"pSD":0.00498,"pScaled":0.00656,"pRank":5,"nSamples":50,"individualID.1":72,"individualID.2":92,"transmission":false,"snpDist":3,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1847,"infectionDiff":1356,"infectionDiffY":3.71507,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"072_093","label":"SNPs","pAvg":0.00924,"pSD":0.00417,"pScaled":0.00251,"pRank":11,"nSamples":50,"individualID.1":72,"individualID.2":93,"transmission":false,"snpDist":4,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":1684,"infectionDiff":1582,"infectionDiffY":4.33425,"timeCat":"5","Z1":"1","Z2":"0","Z3":"3","Z4":"1"} {"pairID":"072_094","label":"SNPs","pAvg":0.00018,"pSD":0.00056,"pScaled":0.00006,"pRank":94,"nSamples":500,"individualID.1":72,"individualID.2":94,"transmission":false,"snpDist":15,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":1730,"infectionDiff":1853,"infectionDiffY":5.07671,"timeCat":"6","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"072_095","label":"SNPs","pAvg":0.00043,"pSD":0.00139,"pScaled":0.00022,"pRank":57,"nSamples":500,"individualID.1":72,"individualID.2":95,"transmission":false,"snpDist":15,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":1312,"infectionDiff":1285,"infectionDiffY":3.52055,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"072_096","label":"SNPs","pAvg":0.00018,"pSD":0.00059,"pScaled":0.00006,"pRank":85,"nSamples":500,"individualID.1":72,"individualID.2":96,"transmission":false,"snpDist":15,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":1407,"infectionDiff":1517,"infectionDiffY":4.15616,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"072_097","label":"SNPs","pAvg":0.00506,"pSD":0.0021,"pScaled":0.00113,"pRank":48,"nSamples":50,"individualID.1":72,"individualID.2":97,"transmission":false,"snpDist":3,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":1650,"infectionDiff":1673,"infectionDiffY":4.58356,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"072_098","label":"SNPs","pAvg":0.01793,"pSD":0.00515,"pScaled":0.00509,"pRank":8,"nSamples":50,"individualID.1":72,"individualID.2":98,"transmission":false,"snpDist":3,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":1469,"infectionDiff":1446,"infectionDiffY":3.96164,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"072_099","label":"SNPs","pAvg":0.0003,"pSD":0.00095,"pScaled":0.0001,"pRank":69,"nSamples":500,"individualID.1":72,"individualID.2":99,"transmission":false,"snpDist":12,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":1452,"infectionDiff":1310,"infectionDiffY":3.58904,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"072_100","label":"SNPs","pAvg":0.00027,"pSD":0.0009,"pScaled":0.00008,"pRank":93,"nSamples":500,"individualID.1":72,"individualID.2":100,"transmission":false,"snpDist":12,"infectionDate.1":"1994-06-20 19:11:11","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1994-11-27 22:42:59","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1651,"infectionDiff":1688,"infectionDiffY":4.62466,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"073_023","label":"SNPs","pAvg":0.00158,"pSD":0.00509,"pScaled":0.0007,"pRank":75,"nSamples":500,"individualID.1":73,"individualID.2":23,"transmission":false,"snpDist":11,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":749,"infectionDiff":742,"infectionDiffY":2.03288,"timeCat":"3","Z1":"1","Z2":"1","Z3":"2","Z4":"3","snpClose":false} {"pairID":"073_026","label":"SNPs","pAvg":0.01708,"pSD":0.00574,"pScaled":0.006,"pRank":10,"nSamples":50,"individualID.1":73,"individualID.2":26,"transmission":false,"snpDist":10,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":353,"infectionDiff":39,"infectionDiffY":0.10685,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"073_027","label":"SNPs","pAvg":0.01234,"pSD":0.00447,"pScaled":0.00441,"pRank":34,"nSamples":50,"individualID.1":73,"individualID.2":27,"transmission":false,"snpDist":9,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":525,"infectionDiff":628,"infectionDiffY":1.72055,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"073_033","label":"SNPs","pAvg":0.00096,"pSD":0.003,"pScaled":0.00044,"pRank":63,"nSamples":500,"individualID.1":73,"individualID.2":33,"transmission":false,"snpDist":11,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":-30,"infectionDiff":310,"infectionDiffY":0.84932,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"073_040","label":"SNPs","pAvg":0.01857,"pSD":0.00553,"pScaled":0.01662,"pRank":19,"nSamples":500,"individualID.1":73,"individualID.2":40,"transmission":false,"snpDist":8,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":-246,"infectionDiff":174,"infectionDiffY":0.47671,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"073_052","label":"SNPs","pAvg":0.0166,"pSD":0.0053,"pScaled":0.00623,"pRank":21,"nSamples":50,"individualID.1":73,"individualID.2":52,"transmission":false,"snpDist":5,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":598,"infectionDiff":190,"infectionDiffY":0.52055,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"073_054","label":"SNPs","pAvg":0.00742,"pSD":0.00196,"pScaled":0.00193,"pRank":30,"nSamples":50,"individualID.1":73,"individualID.2":54,"transmission":false,"snpDist":9,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":456,"infectionDiff":578,"infectionDiffY":1.58356,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"073_057","label":"SNPs","pAvg":0.01287,"pSD":0.00413,"pScaled":0.00257,"pRank":24,"nSamples":50,"individualID.1":73,"individualID.2":57,"transmission":false,"snpDist":10,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":426,"infectionDiff":581,"infectionDiffY":1.59178,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"073_058","label":"SNPs","pAvg":0.00163,"pSD":0.00514,"pScaled":0.00161,"pRank":52,"nSamples":500,"individualID.1":73,"individualID.2":58,"transmission":false,"snpDist":11,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":711,"infectionDiff":269,"infectionDiffY":0.73699,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"073_060","label":"SNPs","pAvg":0.0098,"pSD":0.00346,"pScaled":0.00475,"pRank":33,"nSamples":50,"individualID.1":73,"individualID.2":60,"transmission":false,"snpDist":9,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":753,"infectionDiff":911,"infectionDiffY":2.49589,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"073_061","label":"SNPs","pAvg":0.02317,"pSD":0.00671,"pScaled":0.044,"pRank":7,"nSamples":500,"individualID.1":73,"individualID.2":61,"transmission":false,"snpDist":8,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":546,"infectionDiff":129,"infectionDiffY":0.35342,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"073_067","label":"SNPs","pAvg":0.00097,"pSD":0.00308,"pScaled":0.00024,"pRank":77,"nSamples":500,"individualID.1":73,"individualID.2":67,"transmission":false,"snpDist":11,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":772,"infectionDiff":975,"infectionDiffY":2.67123,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"073_068","label":"SNPs","pAvg":0.00958,"pSD":0.00265,"pScaled":0.00209,"pRank":38,"nSamples":50,"individualID.1":73,"individualID.2":68,"transmission":false,"snpDist":6,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":378,"infectionDiff":627,"infectionDiffY":1.71781,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"073_069","label":"SNPs","pAvg":0.02143,"pSD":0.00599,"pScaled":0.00687,"pRank":15,"nSamples":50,"individualID.1":73,"individualID.2":69,"transmission":false,"snpDist":7,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":423,"infectionDiff":654,"infectionDiffY":1.79178,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"073_075","label":"SNPs","pAvg":0.00103,"pSD":0.00326,"pScaled":0.00445,"pRank":37,"nSamples":500,"individualID.1":73,"individualID.2":75,"transmission":false,"snpDist":13,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":506,"infectionDiff":953,"infectionDiffY":2.61096,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"073_076","label":"SNPs","pAvg":0.00732,"pSD":0.00183,"pScaled":0.00179,"pRank":48,"nSamples":50,"individualID.1":73,"individualID.2":76,"transmission":false,"snpDist":6,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":741,"infectionDiff":627,"infectionDiffY":1.71781,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"073_077","label":"SNPs","pAvg":0.00856,"pSD":0.0029,"pScaled":0.00189,"pRank":32,"nSamples":50,"individualID.1":73,"individualID.2":77,"transmission":false,"snpDist":5,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":-106,"infectionDiff":342,"infectionDiffY":0.93699,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"073_078","label":"SNPs","pAvg":0.01548,"pSD":0.00483,"pScaled":0.00343,"pRank":28,"nSamples":50,"individualID.1":73,"individualID.2":78,"transmission":false,"snpDist":5,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":585,"infectionDiff":655,"infectionDiffY":1.79452,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"073_081","label":"SNPs","pAvg":0.01647,"pSD":0.00555,"pScaled":0.0041,"pRank":12,"nSamples":50,"individualID.1":73,"individualID.2":81,"transmission":false,"snpDist":5,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":718,"infectionDiff":1037,"infectionDiffY":2.8411,"timeCat":"3","Z1":"1","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"073_082","label":"SNPs","pAvg":0.00307,"pSD":0.00127,"pScaled":0.00067,"pRank":84,"nSamples":50,"individualID.1":73,"individualID.2":82,"transmission":false,"snpDist":7,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":722,"infectionDiff":1115,"infectionDiffY":3.05479,"timeCat":"4","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"073_083","label":"SNPs","pAvg":0.01047,"pSD":0.00306,"pScaled":0.00407,"pRank":30,"nSamples":50,"individualID.1":73,"individualID.2":83,"transmission":false,"snpDist":7,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":498,"infectionDiff":584,"infectionDiffY":1.6,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"073_084","label":"SNPs","pAvg":0.00066,"pSD":0.00207,"pScaled":0.00033,"pRank":52,"nSamples":500,"individualID.1":73,"individualID.2":84,"transmission":false,"snpDist":16,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":741,"infectionDiff":632,"infectionDiffY":1.73151,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"073_085","label":"SNPs","pAvg":0.001,"pSD":0.00314,"pScaled":0.00034,"pRank":43,"nSamples":500,"individualID.1":73,"individualID.2":85,"transmission":false,"snpDist":14,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":-147,"infectionDiff":298,"infectionDiffY":0.81644,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"073_087","label":"SNPs","pAvg":0.02567,"pSD":0.00739,"pScaled":0.02095,"pRank":5,"nSamples":50,"individualID.1":73,"individualID.2":87,"transmission":false,"snpDist":7,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":226,"infectionDiff":465,"infectionDiffY":1.27397,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"073_088","label":"SNPs","pAvg":0.00547,"pSD":0.00154,"pScaled":0.00106,"pRank":57,"nSamples":50,"individualID.1":73,"individualID.2":88,"transmission":false,"snpDist":6,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":335,"infectionDiff":800,"infectionDiffY":2.19178,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"073_089","label":"SNPs","pAvg":0.00079,"pSD":0.00247,"pScaled":0.00026,"pRank":52,"nSamples":500,"individualID.1":73,"individualID.2":89,"transmission":false,"snpDist":15,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":627,"infectionDiff":636,"infectionDiffY":1.74247,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"073_090","label":"SNPs","pAvg":0.00056,"pSD":0.00176,"pScaled":0.00015,"pRank":75,"nSamples":500,"individualID.1":73,"individualID.2":90,"transmission":false,"snpDist":16,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":698,"infectionDiff":863,"infectionDiffY":2.36438,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"073_091","label":"SNPs","pAvg":0.00077,"pSD":0.00239,"pScaled":0.00039,"pRank":58,"nSamples":500,"individualID.1":73,"individualID.2":91,"transmission":false,"snpDist":15,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":719,"infectionDiff":454,"infectionDiffY":1.24384,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"073_092","label":"SNPs","pAvg":0.00065,"pSD":0.00204,"pScaled":0.00026,"pRank":53,"nSamples":500,"individualID.1":73,"individualID.2":92,"transmission":false,"snpDist":15,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":766,"infectionDiff":605,"infectionDiffY":1.65753,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"073_093","label":"SNPs","pAvg":0.00092,"pSD":0.00291,"pScaled":0.00025,"pRank":53,"nSamples":500,"individualID.1":73,"individualID.2":93,"transmission":false,"snpDist":16,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":603,"infectionDiff":831,"infectionDiffY":2.27671,"timeCat":"3","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"073_094","label":"SNPs","pAvg":0.01528,"pSD":0.00552,"pScaled":0.00504,"pRank":20,"nSamples":50,"individualID.1":73,"individualID.2":94,"transmission":false,"snpDist":7,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":649,"infectionDiff":1102,"infectionDiffY":3.01918,"timeCat":"4","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"073_095","label":"SNPs","pAvg":0.02612,"pSD":0.00716,"pScaled":0.0133,"pRank":6,"nSamples":50,"individualID.1":73,"individualID.2":95,"transmission":false,"snpDist":7,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":231,"infectionDiff":534,"infectionDiffY":1.46301,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"2"} {"pairID":"073_096","label":"SNPs","pAvg":0.01279,"pSD":0.00374,"pScaled":0.00448,"pRank":14,"nSamples":50,"individualID.1":73,"individualID.2":96,"transmission":false,"snpDist":7,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":326,"infectionDiff":766,"infectionDiffY":2.09863,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"073_097","label":"SNPs","pAvg":0.00054,"pSD":0.0017,"pScaled":0.00012,"pRank":87,"nSamples":500,"individualID.1":73,"individualID.2":97,"transmission":false,"snpDist":15,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":569,"infectionDiff":922,"infectionDiffY":2.52603,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"073_098","label":"SNPs","pAvg":0.00155,"pSD":0.00489,"pScaled":0.00044,"pRank":42,"nSamples":500,"individualID.1":73,"individualID.2":98,"transmission":false,"snpDist":15,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":388,"infectionDiff":695,"infectionDiffY":1.90411,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"073_099","label":"SNPs","pAvg":0.03511,"pSD":0.01064,"pScaled":0.012,"pRank":11,"nSamples":50,"individualID.1":73,"individualID.2":99,"transmission":false,"snpDist":4,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":371,"infectionDiff":559,"infectionDiffY":1.53151,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"073_100","label":"SNPs","pAvg":0.0045,"pSD":0.00154,"pScaled":0.00132,"pRank":68,"nSamples":50,"individualID.1":73,"individualID.2":100,"transmission":false,"snpDist":4,"infectionDate.1":"1996-07-10 23:14:09","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1997-11-12 22:53:27","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":570,"infectionDiff":937,"infectionDiffY":2.56712,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"074_023","label":"SNPs","pAvg":0.00393,"pSD":0.00157,"pScaled":0.00175,"pRank":63,"nSamples":50,"individualID.1":74,"individualID.2":23,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":909,"infectionDiff":1361,"infectionDiffY":3.72877,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"074_026","label":"SNPs","pAvg":0.0089,"pSD":0.00226,"pScaled":0.00313,"pRank":25,"nSamples":50,"individualID.1":74,"individualID.2":26,"transmission":false,"snpDist":9,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":513,"infectionDiff":658,"infectionDiffY":1.80274,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"074_027","label":"SNPs","pAvg":0.00395,"pSD":0.00124,"pScaled":0.00141,"pRank":73,"nSamples":50,"individualID.1":74,"individualID.2":27,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":685,"infectionDiff":1248,"infectionDiffY":3.41918,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"074_028","label":"SNPs","pAvg":0.0102,"pSD":0.00281,"pScaled":0.00285,"pRank":36,"nSamples":50,"individualID.1":74,"individualID.2":28,"transmission":false,"snpDist":8,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1995-01-10 10:44:18","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1997-02-28 00:00:05","sampleDiff":-98,"infectionDiff":72,"infectionDiffY":0.19726,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"074_033","label":"SNPs","pAvg":0.01072,"pSD":0.00359,"pScaled":0.00489,"pRank":16,"nSamples":50,"individualID.1":74,"individualID.2":33,"transmission":false,"snpDist":10,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":130,"infectionDiff":929,"infectionDiffY":2.54521,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"074_036","label":"SNPs","pAvg":0.00923,"pSD":0.0021,"pScaled":0.0025,"pRank":44,"nSamples":50,"individualID.1":74,"individualID.2":36,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":-109,"infectionDiff":537,"infectionDiffY":1.47123,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"074_037","label":"SNPs","pAvg":0.01043,"pSD":0.00274,"pScaled":0.01051,"pRank":26,"nSamples":500,"individualID.1":74,"individualID.2":37,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1994-12-28 18:57:34","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1998-03-11 06:54:30","sampleDiff":278,"infectionDiff":60,"infectionDiffY":0.16438,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"074_040","label":"SNPs","pAvg":0.00554,"pSD":0.00192,"pScaled":0.00496,"pRank":50,"nSamples":500,"individualID.1":74,"individualID.2":40,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":-86,"infectionDiff":793,"infectionDiffY":2.1726,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"074_045","label":"SNPs","pAvg":0.00104,"pSD":0.00324,"pScaled":0.00063,"pRank":49,"nSamples":500,"individualID.1":74,"individualID.2":45,"transmission":false,"snpDist":12,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1995-08-30 12:16:02","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1998-03-20 03:03:53","sampleDiff":287,"infectionDiff":304,"infectionDiffY":0.83288,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"074_052","label":"SNPs","pAvg":0.00613,"pSD":0.00186,"pScaled":0.0023,"pRank":45,"nSamples":50,"individualID.1":74,"individualID.2":52,"transmission":false,"snpDist":4,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":758,"infectionDiff":809,"infectionDiffY":2.21644,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"074_053","label":"SNPs","pAvg":0.00988,"pSD":0.0025,"pScaled":0.00659,"pRank":20,"nSamples":50,"individualID.1":74,"individualID.2":53,"transmission":false,"snpDist":8,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1995-07-31 03:48:58","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1995-11-29 03:55:29","sampleDiff":-555,"infectionDiff":274,"infectionDiffY":0.75068,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"074_054","label":"SNPs","pAvg":0.00699,"pSD":0.002,"pScaled":0.00182,"pRank":31,"nSamples":50,"individualID.1":74,"individualID.2":54,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":616,"infectionDiff":1198,"infectionDiffY":3.28219,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"074_055","label":"SNPs","pAvg":0.00726,"pSD":0.00174,"pScaled":0.00223,"pRank":29,"nSamples":50,"individualID.1":74,"individualID.2":55,"transmission":false,"snpDist":8,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1996-02-08 01:18:52","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1996-05-01 11:28:49","sampleDiff":-401,"infectionDiff":466,"infectionDiffY":1.27671,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"074_056","label":"SNPs","pAvg":0.00861,"pSD":0.00221,"pScaled":0.00206,"pRank":28,"nSamples":50,"individualID.1":74,"individualID.2":56,"transmission":false,"snpDist":8,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":23,"infectionDiff":550,"infectionDiffY":1.50685,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"074_057","label":"SNPs","pAvg":0.00408,"pSD":0.00134,"pScaled":0.00082,"pRank":44,"nSamples":50,"individualID.1":74,"individualID.2":57,"transmission":false,"snpDist":9,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":586,"infectionDiff":1200,"infectionDiffY":3.28767,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"074_058","label":"SNPs","pAvg":0.00636,"pSD":0.00213,"pScaled":0.00627,"pRank":39,"nSamples":500,"individualID.1":74,"individualID.2":58,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":871,"infectionDiff":889,"infectionDiffY":2.43562,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"074_060","label":"SNPs","pAvg":0.00159,"pSD":0.00079,"pScaled":0.00077,"pRank":68,"nSamples":50,"individualID.1":74,"individualID.2":60,"transmission":false,"snpDist":8,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":913,"infectionDiff":1531,"infectionDiffY":4.19452,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"074_061","label":"SNPs","pAvg":0.01231,"pSD":0.00407,"pScaled":0.02337,"pRank":11,"nSamples":500,"individualID.1":74,"individualID.2":61,"transmission":false,"snpDist":7,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":706,"infectionDiff":749,"infectionDiffY":2.05205,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"074_064","label":"SNPs","pAvg":0.01536,"pSD":0.00394,"pScaled":0.00583,"pRank":12,"nSamples":50,"individualID.1":74,"individualID.2":64,"transmission":false,"snpDist":9,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1996-01-02 21:54:22","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1996-06-26 07:07:21","sampleDiff":-345,"infectionDiff":430,"infectionDiffY":1.17808,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"074_065","label":"SNPs","pAvg":0.01115,"pSD":0.00247,"pScaled":0.00861,"pRank":14,"nSamples":50,"individualID.1":74,"individualID.2":65,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1995-10-28 04:44:51","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1996-07-04 07:57:04","sampleDiff":-337,"infectionDiff":363,"infectionDiffY":0.99452,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"074_066","label":"SNPs","pAvg":0.00772,"pSD":0.002,"pScaled":0.00204,"pRank":29,"nSamples":50,"individualID.1":74,"individualID.2":66,"transmission":false,"snpDist":9,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":-190,"infectionDiff":509,"infectionDiffY":1.39452,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"074_067","label":"SNPs","pAvg":0.00179,"pSD":0.0008,"pScaled":0.00045,"pRank":72,"nSamples":50,"individualID.1":74,"individualID.2":67,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":932,"infectionDiff":1595,"infectionDiffY":4.36986,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"074_068","label":"SNPs","pAvg":0.0084,"pSD":0.00289,"pScaled":0.00183,"pRank":46,"nSamples":50,"individualID.1":74,"individualID.2":68,"transmission":false,"snpDist":5,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":538,"infectionDiff":1247,"infectionDiffY":3.41644,"timeCat":"4","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"074_069","label":"SNPs","pAvg":0.00625,"pSD":0.00234,"pScaled":0.00201,"pRank":26,"nSamples":50,"individualID.1":74,"individualID.2":69,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":583,"infectionDiff":1273,"infectionDiffY":3.48767,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"074_073","label":"SNPs","pAvg":0.02315,"pSD":0.00456,"pScaled":0.01705,"pRank":7,"nSamples":50,"individualID.1":74,"individualID.2":73,"transmission":false,"snpDist":3,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":160,"infectionDiff":620,"infectionDiffY":1.69863,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"074_075","label":"SNPs","pAvg":0.00015,"pSD":0.00052,"pScaled":0.00067,"pRank":88,"nSamples":500,"individualID.1":74,"individualID.2":75,"transmission":false,"snpDist":12,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":666,"infectionDiff":1573,"infectionDiffY":4.30959,"timeCat":"5","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"074_076","label":"SNPs","pAvg":0.00338,"pSD":0.00136,"pScaled":0.00083,"pRank":69,"nSamples":50,"individualID.1":74,"individualID.2":76,"transmission":false,"snpDist":5,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":901,"infectionDiff":1247,"infectionDiffY":3.41644,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"074_077","label":"SNPs","pAvg":0.00633,"pSD":0.00205,"pScaled":0.0014,"pRank":46,"nSamples":50,"individualID.1":74,"individualID.2":77,"transmission":false,"snpDist":4,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":54,"infectionDiff":962,"infectionDiffY":2.63562,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"074_078","label":"SNPs","pAvg":0.00346,"pSD":0.00127,"pScaled":0.00077,"pRank":80,"nSamples":50,"individualID.1":74,"individualID.2":78,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":745,"infectionDiff":1275,"infectionDiffY":3.49315,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"074_079","label":"SNPs","pAvg":0.01665,"pSD":0.00499,"pScaled":0.00837,"pRank":8,"nSamples":50,"individualID.1":74,"individualID.2":79,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":153,"infectionDiff":558,"infectionDiffY":1.52877,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"074_080","label":"SNPs","pAvg":0.04919,"pSD":0.01359,"pScaled":0.35934,"pRank":1,"nSamples":500,"individualID.1":74,"individualID.2":80,"transmission":true,"snpDist":3,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1996-03-03 15:59:34","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1997-11-15 01:34:29","sampleDiff":162,"infectionDiff":490,"infectionDiffY":1.34247,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"074_081","label":"SNPs","pAvg":0.0016,"pSD":0.00081,"pScaled":0.0004,"pRank":90,"nSamples":50,"individualID.1":74,"individualID.2":81,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":878,"infectionDiff":1657,"infectionDiffY":4.53973,"timeCat":"5","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"074_082","label":"SNPs","pAvg":0.00363,"pSD":0.00154,"pScaled":0.00079,"pRank":83,"nSamples":50,"individualID.1":74,"individualID.2":82,"transmission":false,"snpDist":6,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":882,"infectionDiff":1734,"infectionDiffY":4.75068,"timeCat":"5","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"074_083","label":"SNPs","pAvg":0.00436,"pSD":0.00144,"pScaled":0.0017,"pRank":68,"nSamples":50,"individualID.1":74,"individualID.2":83,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":658,"infectionDiff":1204,"infectionDiffY":3.29863,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"074_084","label":"SNPs","pAvg":0.00078,"pSD":0.00244,"pScaled":0.00039,"pRank":49,"nSamples":500,"individualID.1":74,"individualID.2":84,"transmission":false,"snpDist":15,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":901,"infectionDiff":1252,"infectionDiffY":3.43014,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"074_085","label":"SNPs","pAvg":0.00106,"pSD":0.00341,"pScaled":0.00036,"pRank":42,"nSamples":500,"individualID.1":74,"individualID.2":85,"transmission":false,"snpDist":13,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":13,"infectionDiff":917,"infectionDiffY":2.51233,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"074_086","label":"SNPs","pAvg":0.70456,"pSD":0.45331,"pScaled":0.2244,"pRank":2,"nSamples":167,"individualID.1":74,"individualID.2":86,"transmission":false,"snpDist":0,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":-149,"infectionDiff":545,"infectionDiffY":1.49315,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":true} {"pairID":"074_087","label":"SNPs","pAvg":0.01371,"pSD":0.00398,"pScaled":0.01119,"pRank":6,"nSamples":50,"individualID.1":74,"individualID.2":87,"transmission":false,"snpDist":4,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":386,"infectionDiff":1085,"infectionDiffY":2.9726,"timeCat":"3","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"074_088","label":"SNPs","pAvg":0.00362,"pSD":0.0013,"pScaled":0.0007,"pRank":78,"nSamples":50,"individualID.1":74,"individualID.2":88,"transmission":false,"snpDist":5,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":495,"infectionDiff":1420,"infectionDiffY":3.89041,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"074_089","label":"SNPs","pAvg":0.00067,"pSD":0.00213,"pScaled":0.00022,"pRank":58,"nSamples":500,"individualID.1":74,"individualID.2":89,"transmission":false,"snpDist":14,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":787,"infectionDiff":1256,"infectionDiffY":3.4411,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"074_090","label":"SNPs","pAvg":0.00315,"pSD":0.00141,"pScaled":0.00082,"pRank":45,"nSamples":50,"individualID.1":74,"individualID.2":90,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":858,"infectionDiff":1482,"infectionDiffY":4.06027,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"074_091","label":"SNPs","pAvg":0.00106,"pSD":0.00338,"pScaled":0.00053,"pRank":47,"nSamples":500,"individualID.1":74,"individualID.2":91,"transmission":false,"snpDist":14,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":879,"infectionDiff":1074,"infectionDiffY":2.94247,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"074_092","label":"SNPs","pAvg":0.00078,"pSD":0.00246,"pScaled":0.00031,"pRank":51,"nSamples":500,"individualID.1":74,"individualID.2":92,"transmission":false,"snpDist":14,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":926,"infectionDiff":1225,"infectionDiffY":3.35616,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"074_093","label":"SNPs","pAvg":0.00075,"pSD":0.0024,"pScaled":0.0002,"pRank":60,"nSamples":500,"individualID.1":74,"individualID.2":93,"transmission":false,"snpDist":15,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":763,"infectionDiff":1450,"infectionDiffY":3.9726,"timeCat":"4","Z1":"0","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"074_094","label":"SNPs","pAvg":0.0019,"pSD":0.0009,"pScaled":0.00063,"pRank":59,"nSamples":50,"individualID.1":74,"individualID.2":94,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":809,"infectionDiff":1722,"infectionDiffY":4.71781,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"074_095","label":"SNPs","pAvg":0.00891,"pSD":0.00321,"pScaled":0.00454,"pRank":8,"nSamples":50,"individualID.1":74,"individualID.2":95,"transmission":false,"snpDist":4,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":391,"infectionDiff":1154,"infectionDiffY":3.16164,"timeCat":"4","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"074_096","label":"SNPs","pAvg":0.00797,"pSD":0.00235,"pScaled":0.00279,"pRank":22,"nSamples":50,"individualID.1":74,"individualID.2":96,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":486,"infectionDiff":1386,"infectionDiffY":3.79726,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"074_097","label":"SNPs","pAvg":0.00301,"pSD":0.00135,"pScaled":0.00067,"pRank":64,"nSamples":50,"individualID.1":74,"individualID.2":97,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":729,"infectionDiff":1542,"infectionDiffY":4.22466,"timeCat":"5","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"074_098","label":"SNPs","pAvg":0.00035,"pSD":0.00112,"pScaled":0.0001,"pRank":79,"nSamples":500,"individualID.1":74,"individualID.2":98,"transmission":false,"snpDist":14,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":548,"infectionDiff":1315,"infectionDiffY":3.60274,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"074_099","label":"SNPs","pAvg":0.71687,"pSD":0.45073,"pScaled":0.24491,"pRank":3,"nSamples":176,"individualID.1":74,"individualID.2":99,"transmission":false,"snpDist":1,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":530,"infectionDiff":1179,"infectionDiffY":3.23014,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":true} {"pairID":"074_100","label":"SNPs","pAvg":0.00164,"pSD":0.00085,"pScaled":0.00048,"pRank":78,"nSamples":50,"individualID.1":74,"individualID.2":100,"transmission":false,"infectionDate.1":"1994-10-30 04:54:20","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1997-06-06 01:47:02","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":730,"infectionDiff":1557,"infectionDiffY":4.26575,"timeCat":"5","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"075_067","label":"SNPs","pAvg":0.01909,"pSD":0.00402,"pScaled":0.00482,"pRank":25,"nSamples":50,"individualID.1":75,"individualID.2":67,"transmission":false,"snpDist":6,"infectionDate.1":"1999-02-19 09:11:04","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-04-03 08:10:08","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":266,"infectionDiff":22,"infectionDiffY":0.06027,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"075_081","label":"SNPs","pAvg":0.02243,"pSD":0.00645,"pScaled":0.00559,"pRank":8,"nSamples":50,"individualID.1":75,"individualID.2":81,"transmission":false,"snpDist":8,"infectionDate.1":"1999-02-19 09:11:04","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-04-03 08:10:08","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":212,"infectionDiff":84,"infectionDiffY":0.23014,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"075_082","label":"SNPs","pAvg":0.00966,"pSD":0.00222,"pScaled":0.0021,"pRank":35,"nSamples":50,"individualID.1":75,"individualID.2":82,"transmission":false,"snpDist":10,"infectionDate.1":"1999-02-19 09:11:04","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-04-03 08:10:08","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":216,"infectionDiff":161,"infectionDiffY":0.4411,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"075_094","label":"SNPs","pAvg":0.00212,"pSD":0.0065,"pScaled":0.0007,"pRank":52,"nSamples":500,"individualID.1":75,"individualID.2":94,"transmission":false,"snpDist":16,"infectionDate.1":"1999-02-19 09:11:04","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-04-03 08:10:08","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":142,"infectionDiff":149,"infectionDiffY":0.40822,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"076_023","label":"SNPs","pAvg":0.03707,"pSD":0.00844,"pScaled":0.0165,"pRank":12,"nSamples":50,"individualID.1":76,"individualID.2":23,"transmission":false,"snpDist":9,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":8,"infectionDiff":115,"infectionDiffY":0.31507,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"076_027","label":"SNPs","pAvg":0.02758,"pSD":0.00584,"pScaled":0.00985,"pRank":13,"nSamples":50,"individualID.1":76,"individualID.2":27,"transmission":false,"snpDist":7,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":-216,"infectionDiff":1,"infectionDiffY":0.00274,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"076_060","label":"SNPs","pAvg":0.03181,"pSD":0.00722,"pScaled":0.01541,"pRank":12,"nSamples":50,"individualID.1":76,"individualID.2":60,"transmission":false,"snpDist":3,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":12,"infectionDiff":284,"infectionDiffY":0.77808,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"076_067","label":"SNPs","pAvg":0.04501,"pSD":0.00878,"pScaled":0.01136,"pRank":12,"nSamples":50,"individualID.1":76,"individualID.2":67,"transmission":false,"snpDist":7,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":31,"infectionDiff":348,"infectionDiffY":0.95342,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"076_069","label":"SNPs","pAvg":0.03117,"pSD":0.00674,"pScaled":0.00999,"pRank":10,"nSamples":50,"individualID.1":76,"individualID.2":69,"transmission":false,"snpDist":3,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":-318,"infectionDiff":27,"infectionDiffY":0.07397,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"076_075","label":"SNPs","pAvg":0.01113,"pSD":0.0024,"pScaled":0.04834,"pRank":4,"nSamples":500,"individualID.1":76,"individualID.2":75,"transmission":false,"snpDist":9,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-235,"infectionDiff":327,"infectionDiffY":0.89589,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"076_078","label":"SNPs","pAvg":0.72464,"pSD":0.43838,"pScaled":0.16045,"pRank":1,"nSamples":176,"individualID.1":76,"individualID.2":78,"transmission":false,"snpDist":1,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":-156,"infectionDiff":28,"infectionDiffY":0.07671,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"076_081","label":"SNPs","pAvg":0.35628,"pSD":0.47614,"pScaled":0.08873,"pRank":6,"nSamples":77,"individualID.1":76,"individualID.2":81,"transmission":false,"snpDist":1,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":-23,"infectionDiff":411,"infectionDiffY":1.12603,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":true} {"pairID":"076_082","label":"SNPs","pAvg":0.02172,"pSD":0.00464,"pScaled":0.00473,"pRank":18,"nSamples":50,"individualID.1":76,"individualID.2":82,"transmission":false,"snpDist":3,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":-19,"infectionDiff":488,"infectionDiffY":1.33699,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"076_084","label":"SNPs","pAvg":0.00101,"pSD":0.0031,"pScaled":0.00051,"pRank":43,"nSamples":500,"individualID.1":76,"individualID.2":84,"transmission":false,"snpDist":14,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":-0,"infectionDiff":6,"infectionDiffY":0.01644,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"076_088","label":"SNPs","pAvg":0.49034,"pSD":0.4861,"pScaled":0.09488,"pRank":5,"nSamples":95,"individualID.1":76,"individualID.2":88,"transmission":false,"snpDist":2,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-406,"infectionDiff":173,"infectionDiffY":0.47397,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"076_089","label":"SNPs","pAvg":0.00117,"pSD":0.00359,"pScaled":0.00037,"pRank":44,"nSamples":500,"individualID.1":76,"individualID.2":89,"transmission":false,"snpDist":13,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":-114,"infectionDiff":9,"infectionDiffY":0.02466,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"076_090","label":"SNPs","pAvg":0.00112,"pSD":0.00343,"pScaled":0.00029,"pRank":63,"nSamples":500,"individualID.1":76,"individualID.2":90,"transmission":false,"snpDist":14,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":-43,"infectionDiff":236,"infectionDiffY":0.64658,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"076_093","label":"SNPs","pAvg":0.00125,"pSD":0.00389,"pScaled":0.00034,"pRank":49,"nSamples":500,"individualID.1":76,"individualID.2":93,"transmission":false,"snpDist":14,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":-138,"infectionDiff":204,"infectionDiffY":0.5589,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"076_094","label":"SNPs","pAvg":0.02083,"pSD":0.00427,"pScaled":0.00687,"pRank":12,"nSamples":50,"individualID.1":76,"individualID.2":94,"transmission":false,"snpDist":9,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":-92,"infectionDiff":475,"infectionDiffY":1.30137,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"076_096","label":"SNPs","pAvg":0.02792,"pSD":0.0063,"pScaled":0.00978,"pRank":9,"nSamples":50,"individualID.1":76,"individualID.2":96,"transmission":false,"snpDist":9,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-415,"infectionDiff":139,"infectionDiffY":0.38082,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"076_097","label":"SNPs","pAvg":0.00308,"pSD":0.00942,"pScaled":0.00069,"pRank":63,"nSamples":500,"individualID.1":76,"individualID.2":97,"transmission":false,"snpDist":13,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":-172,"infectionDiff":295,"infectionDiffY":0.80822,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"076_098","label":"SNPs","pAvg":0.00113,"pSD":0.00346,"pScaled":0.00032,"pRank":49,"nSamples":500,"individualID.1":76,"individualID.2":98,"transmission":false,"snpDist":13,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":-353,"infectionDiff":68,"infectionDiffY":0.1863,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"076_100","label":"SNPs","pAvg":0.08632,"pSD":0.01424,"pScaled":0.02544,"pRank":4,"nSamples":50,"individualID.1":76,"individualID.2":100,"transmission":false,"snpDist":6,"infectionDate.1":"1998-03-29 18:22:50","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-11-24 02:09:24","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":-171,"infectionDiff":310,"infectionDiffY":0.84932,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"077_023","label":"SNPs","pAvg":0.02357,"pSD":0.00474,"pScaled":0.01049,"pRank":16,"nSamples":50,"individualID.1":77,"individualID.2":23,"transmission":false,"snpDist":8,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":855,"infectionDiff":400,"infectionDiffY":1.09589,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"077_027","label":"SNPs","pAvg":0.03176,"pSD":0.00638,"pScaled":0.01134,"pRank":11,"nSamples":50,"individualID.1":77,"individualID.2":27,"transmission":false,"snpDist":6,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":631,"infectionDiff":286,"infectionDiffY":0.78356,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"077_054","label":"SNPs","pAvg":0.04479,"pSD":0.00937,"pScaled":0.01166,"pRank":7,"nSamples":50,"individualID.1":77,"individualID.2":54,"transmission":false,"snpDist":4,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":562,"infectionDiff":236,"infectionDiffY":0.64658,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"077_057","label":"SNPs","pAvg":0.052,"pSD":0.00972,"pScaled":0.0104,"pRank":12,"nSamples":50,"individualID.1":77,"individualID.2":57,"transmission":false,"snpDist":5,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":532,"infectionDiff":239,"infectionDiffY":0.65479,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"077_060","label":"SNPs","pAvg":0.02193,"pSD":0.00448,"pScaled":0.01062,"pRank":17,"nSamples":50,"individualID.1":77,"individualID.2":60,"transmission":false,"snpDist":4,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":859,"infectionDiff":569,"infectionDiffY":1.5589,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"077_067","label":"SNPs","pAvg":0.03952,"pSD":0.00968,"pScaled":0.00997,"pRank":13,"nSamples":50,"individualID.1":77,"individualID.2":67,"transmission":false,"snpDist":6,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":878,"infectionDiff":633,"infectionDiffY":1.73425,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"077_068","label":"SNPs","pAvg":0.67577,"pSD":0.4578,"pScaled":0.14763,"pRank":1,"nSamples":149,"individualID.1":77,"individualID.2":68,"transmission":false,"snpDist":1,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":484,"infectionDiff":285,"infectionDiffY":0.78082,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":true} {"pairID":"077_069","label":"SNPs","pAvg":0.76032,"pSD":0.42032,"pScaled":0.24376,"pRank":1,"nSamples":203,"individualID.1":77,"individualID.2":69,"transmission":false,"snpDist":2,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":529,"infectionDiff":312,"infectionDiffY":0.85479,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"077_075","label":"SNPs","pAvg":0.00749,"pSD":0.00185,"pScaled":0.0325,"pRank":13,"nSamples":500,"individualID.1":77,"individualID.2":75,"transmission":false,"snpDist":8,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":612,"infectionDiff":611,"infectionDiffY":1.67397,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"077_076","label":"SNPs","pAvg":0.6795,"pSD":0.45254,"pScaled":0.16655,"pRank":3,"nSamples":149,"individualID.1":77,"individualID.2":76,"transmission":false,"snpDist":1,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":847,"infectionDiff":285,"infectionDiffY":0.78082,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"077_078","label":"SNPs","pAvg":0.56926,"pSD":0.48567,"pScaled":0.12605,"pRank":5,"nSamples":113,"individualID.1":77,"individualID.2":78,"transmission":false,"snpDist":0,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":691,"infectionDiff":313,"infectionDiffY":0.85753,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"077_081","label":"SNPs","pAvg":0.64554,"pSD":0.47726,"pScaled":0.16076,"pRank":2,"nSamples":140,"individualID.1":77,"individualID.2":81,"transmission":false,"snpDist":0,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":824,"infectionDiff":696,"infectionDiffY":1.90685,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":true} {"pairID":"077_082","label":"SNPs","pAvg":0.62521,"pSD":0.47888,"pScaled":0.13611,"pRank":3,"nSamples":131,"individualID.1":77,"individualID.2":82,"transmission":false,"snpDist":2,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":828,"infectionDiff":773,"infectionDiffY":2.11781,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"077_083","label":"SNPs","pAvg":0.79613,"pSD":0.38772,"pScaled":0.30976,"pRank":2,"nSamples":230,"individualID.1":77,"individualID.2":83,"transmission":true,"snpDist":2,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":604,"infectionDiff":243,"infectionDiffY":0.66575,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"2","snpClose":true} {"pairID":"077_084","label":"SNPs","pAvg":0.00116,"pSD":0.00356,"pScaled":0.00059,"pRank":38,"nSamples":500,"individualID.1":77,"individualID.2":84,"transmission":false,"snpDist":13,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":847,"infectionDiff":291,"infectionDiffY":0.79726,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"077_087","label":"SNPs","pAvg":0.03446,"pSD":0.0083,"pScaled":0.02812,"pRank":3,"nSamples":50,"individualID.1":77,"individualID.2":87,"transmission":false,"snpDist":8,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":332,"infectionDiff":123,"infectionDiffY":0.33699,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"077_088","label":"SNPs","pAvg":0.44204,"pSD":0.47628,"pScaled":0.08554,"pRank":6,"nSamples":86,"individualID.1":77,"individualID.2":88,"transmission":false,"snpDist":1,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":441,"infectionDiff":458,"infectionDiffY":1.25479,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"077_089","label":"SNPs","pAvg":0.00101,"pSD":0.00311,"pScaled":0.00032,"pRank":47,"nSamples":500,"individualID.1":77,"individualID.2":89,"transmission":false,"snpDist":12,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":733,"infectionDiff":294,"infectionDiffY":0.80548,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"077_090","label":"SNPs","pAvg":0.00077,"pSD":0.00238,"pScaled":0.0002,"pRank":71,"nSamples":500,"individualID.1":77,"individualID.2":90,"transmission":false,"snpDist":13,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":804,"infectionDiff":521,"infectionDiffY":1.4274,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"077_091","label":"SNPs","pAvg":0.0026,"pSD":0.00799,"pScaled":0.0013,"pRank":34,"nSamples":500,"individualID.1":77,"individualID.2":91,"transmission":false,"snpDist":12,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":825,"infectionDiff":112,"infectionDiffY":0.30685,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"077_092","label":"SNPs","pAvg":0.00113,"pSD":0.00352,"pScaled":0.00046,"pRank":40,"nSamples":500,"individualID.1":77,"individualID.2":92,"transmission":false,"snpDist":12,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":872,"infectionDiff":263,"infectionDiffY":0.72055,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"077_093","label":"SNPs","pAvg":0.00084,"pSD":0.00258,"pScaled":0.00023,"pRank":54,"nSamples":500,"individualID.1":77,"individualID.2":93,"transmission":false,"snpDist":13,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":709,"infectionDiff":489,"infectionDiffY":1.33973,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"077_094","label":"SNPs","pAvg":0.01789,"pSD":0.00559,"pScaled":0.0059,"pRank":15,"nSamples":50,"individualID.1":77,"individualID.2":94,"transmission":false,"snpDist":8,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":755,"infectionDiff":760,"infectionDiffY":2.08219,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"077_095","label":"SNPs","pAvg":0.03453,"pSD":0.00792,"pScaled":0.01757,"pRank":4,"nSamples":50,"individualID.1":77,"individualID.2":95,"transmission":false,"snpDist":8,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":337,"infectionDiff":192,"infectionDiffY":0.52603,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"077_096","label":"SNPs","pAvg":0.02438,"pSD":0.00611,"pScaled":0.00854,"pRank":10,"nSamples":50,"individualID.1":77,"individualID.2":96,"transmission":false,"snpDist":8,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":432,"infectionDiff":424,"infectionDiffY":1.16164,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"077_097","label":"SNPs","pAvg":0.00209,"pSD":0.00644,"pScaled":0.00047,"pRank":67,"nSamples":500,"individualID.1":77,"individualID.2":97,"transmission":false,"snpDist":12,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":675,"infectionDiff":580,"infectionDiffY":1.58904,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"077_098","label":"SNPs","pAvg":0.00097,"pSD":0.003,"pScaled":0.00028,"pRank":57,"nSamples":500,"individualID.1":77,"individualID.2":98,"transmission":false,"snpDist":12,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":494,"infectionDiff":353,"infectionDiffY":0.96712,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"077_099","label":"SNPs","pAvg":0.03172,"pSD":0.00698,"pScaled":0.01084,"pRank":12,"nSamples":50,"individualID.1":77,"individualID.2":99,"transmission":false,"snpDist":5,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":476,"infectionDiff":217,"infectionDiffY":0.59452,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"077_100","label":"SNPs","pAvg":0.04034,"pSD":0.0097,"pScaled":0.01189,"pRank":7,"nSamples":50,"individualID.1":77,"individualID.2":100,"transmission":false,"snpDist":5,"infectionDate.1":"1997-06-17 21:43:24","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1997-07-30 00:47:32","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":676,"infectionDiff":595,"infectionDiffY":1.63014,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"078_023","label":"SNPs","pAvg":0.1098,"pSD":0.01838,"pScaled":0.04887,"pRank":2,"nSamples":50,"individualID.1":78,"individualID.2":23,"transmission":false,"infectionDate.1":"1998-04-26 19:29:31","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1999-06-20 19:47:24","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":164,"infectionDiff":87,"infectionDiffY":0.23836,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"078_060","label":"SNPs","pAvg":0.09426,"pSD":0.01537,"pScaled":0.04567,"pRank":2,"nSamples":50,"individualID.1":78,"individualID.2":60,"transmission":false,"snpDist":4,"infectionDate.1":"1998-04-26 19:29:31","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-06-20 19:47:24","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":168,"infectionDiff":256,"infectionDiffY":0.70137,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"078_067","label":"SNPs","pAvg":0.05193,"pSD":0.01068,"pScaled":0.0131,"pRank":8,"nSamples":50,"individualID.1":78,"individualID.2":67,"transmission":false,"infectionDate.1":"1998-04-26 19:29:31","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-06-20 19:47:24","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":187,"infectionDiff":320,"infectionDiffY":0.87671,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"078_075","label":"SNPs","pAvg":0.02144,"pSD":0.00462,"pScaled":0.09306,"pRank":1,"nSamples":500,"individualID.1":78,"individualID.2":75,"transmission":false,"snpDist":8,"infectionDate.1":"1998-04-26 19:29:31","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-06-20 19:47:24","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-78,"infectionDiff":299,"infectionDiffY":0.81918,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"078_081","label":"SNPs","pAvg":0.01761,"pSD":0.00552,"pScaled":0.00439,"pRank":11,"nSamples":50,"individualID.1":78,"individualID.2":81,"transmission":false,"infectionDate.1":"1998-04-26 19:29:31","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-06-20 19:47:24","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":133,"infectionDiff":383,"infectionDiffY":1.04932,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"078_082","label":"SNPs","pAvg":0.53655,"pSD":0.484,"pScaled":0.11681,"pRank":5,"nSamples":104,"individualID.1":78,"individualID.2":82,"transmission":false,"snpDist":2,"infectionDate.1":"1998-04-26 19:29:31","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-06-20 19:47:24","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":137,"infectionDiff":460,"infectionDiffY":1.26027,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"078_088","label":"SNPs","pAvg":0.30315,"pSD":0.42131,"pScaled":0.05866,"pRank":9,"nSamples":68,"individualID.1":78,"individualID.2":88,"transmission":false,"snpDist":1,"infectionDate.1":"1998-04-26 19:29:31","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-06-20 19:47:24","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-250,"infectionDiff":145,"infectionDiffY":0.39726,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"078_090","label":"SNPs","pAvg":0.03052,"pSD":0.00564,"pScaled":0.00791,"pRank":9,"nSamples":50,"individualID.1":78,"individualID.2":90,"transmission":false,"infectionDate.1":"1998-04-26 19:29:31","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-06-20 19:47:24","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":113,"infectionDiff":208,"infectionDiffY":0.56986,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"078_093","label":"SNPs","pAvg":0.00338,"pSD":0.01043,"pScaled":0.00092,"pRank":26,"nSamples":500,"individualID.1":78,"individualID.2":93,"transmission":false,"snpDist":13,"infectionDate.1":"1998-04-26 19:29:31","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-06-20 19:47:24","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":18,"infectionDiff":176,"infectionDiffY":0.48219,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"078_094","label":"SNPs","pAvg":0.01607,"pSD":0.00394,"pScaled":0.0053,"pRank":18,"nSamples":50,"individualID.1":78,"individualID.2":94,"transmission":false,"infectionDate.1":"1998-04-26 19:29:31","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-06-20 19:47:24","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":64,"infectionDiff":447,"infectionDiffY":1.22466,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"078_096","label":"SNPs","pAvg":0.01047,"pSD":0.00234,"pScaled":0.00367,"pRank":17,"nSamples":50,"individualID.1":78,"individualID.2":96,"transmission":false,"infectionDate.1":"1998-04-26 19:29:31","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-06-20 19:47:24","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-259,"infectionDiff":111,"infectionDiffY":0.30411,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"078_097","label":"SNPs","pAvg":0.05262,"pSD":0.0092,"pScaled":0.01179,"pRank":9,"nSamples":50,"individualID.1":78,"individualID.2":97,"transmission":false,"infectionDate.1":"1998-04-26 19:29:31","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-06-20 19:47:24","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":-16,"infectionDiff":267,"infectionDiffY":0.73151,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"078_098","label":"SNPs","pAvg":0.00605,"pSD":0.01855,"pScaled":0.00172,"pRank":14,"nSamples":500,"individualID.1":78,"individualID.2":98,"transmission":false,"snpDist":12,"infectionDate.1":"1998-04-26 19:29:31","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1999-06-20 19:47:24","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":-197,"infectionDiff":40,"infectionDiffY":0.10959,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"078_100","label":"SNPs","pAvg":0.02753,"pSD":0.00522,"pScaled":0.00811,"pRank":15,"nSamples":50,"individualID.1":78,"individualID.2":100,"transmission":false,"infectionDate.1":"1998-04-26 19:29:31","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-06-20 19:47:24","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":-15,"infectionDiff":282,"infectionDiffY":0.7726,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"079_023","label":"SNPs","pAvg":0.01729,"pSD":0.00431,"pScaled":0.00769,"pRank":23,"nSamples":50,"individualID.1":79,"individualID.2":23,"transmission":false,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":755,"infectionDiff":803,"infectionDiffY":2.2,"timeCat":"3","Z1":"0","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"079_026","label":"SNPs","pAvg":0.00114,"pSD":0.00351,"pScaled":0.0004,"pRank":59,"nSamples":500,"individualID.1":79,"individualID.2":26,"transmission":false,"snpDist":12,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":359,"infectionDiff":100,"infectionDiffY":0.27397,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"079_027","label":"SNPs","pAvg":0.02394,"pSD":0.00635,"pScaled":0.00855,"pRank":17,"nSamples":50,"individualID.1":79,"individualID.2":27,"transmission":false,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":532,"infectionDiff":689,"infectionDiffY":1.88767,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"079_033","label":"SNPs","pAvg":0.01438,"pSD":0.00421,"pScaled":0.00656,"pRank":12,"nSamples":50,"individualID.1":79,"individualID.2":33,"transmission":false,"snpDist":6,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":-24,"infectionDiff":371,"infectionDiffY":1.01644,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"079_040","label":"SNPs","pAvg":0.02681,"pSD":0.00545,"pScaled":0.02398,"pRank":15,"nSamples":500,"individualID.1":79,"individualID.2":40,"transmission":false,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":-240,"infectionDiff":235,"infectionDiffY":0.64384,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"079_052","label":"SNPs","pAvg":0.00114,"pSD":0.00349,"pScaled":0.00043,"pRank":61,"nSamples":500,"individualID.1":79,"individualID.2":52,"transmission":false,"snpDist":13,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":604,"infectionDiff":251,"infectionDiffY":0.68767,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"079_054","label":"SNPs","pAvg":0.01456,"pSD":0.00378,"pScaled":0.00379,"pRank":16,"nSamples":50,"individualID.1":79,"individualID.2":54,"transmission":false,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":463,"infectionDiff":640,"infectionDiffY":1.75342,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"079_057","label":"SNPs","pAvg":0.00089,"pSD":0.00277,"pScaled":0.00018,"pRank":63,"nSamples":500,"individualID.1":79,"individualID.2":57,"transmission":false,"snpDist":16,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":433,"infectionDiff":642,"infectionDiffY":1.7589,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"079_058","label":"SNPs","pAvg":0.01113,"pSD":0.0024,"pScaled":0.01099,"pRank":26,"nSamples":500,"individualID.1":79,"individualID.2":58,"transmission":false,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":718,"infectionDiff":331,"infectionDiffY":0.90685,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"079_060","label":"SNPs","pAvg":0.00147,"pSD":0.00473,"pScaled":0.00071,"pRank":70,"nSamples":500,"individualID.1":79,"individualID.2":60,"transmission":false,"snpDist":15,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":759,"infectionDiff":973,"infectionDiffY":2.66575,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"079_061","label":"SNPs","pAvg":0.00217,"pSD":0.00665,"pScaled":0.00412,"pRank":36,"nSamples":500,"individualID.1":79,"individualID.2":61,"transmission":false,"snpDist":14,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":552,"infectionDiff":191,"infectionDiffY":0.52329,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"079_067","label":"SNPs","pAvg":0.00637,"pSD":0.00208,"pScaled":0.00161,"pRank":52,"nSamples":50,"individualID.1":79,"individualID.2":67,"transmission":false,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":779,"infectionDiff":1037,"infectionDiffY":2.8411,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"079_068","label":"SNPs","pAvg":0.00499,"pSD":0.01557,"pScaled":0.00109,"pRank":69,"nSamples":500,"individualID.1":79,"individualID.2":68,"transmission":false,"snpDist":12,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":385,"infectionDiff":688,"infectionDiffY":1.88493,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"079_069","label":"SNPs","pAvg":0.01375,"pSD":0.00363,"pScaled":0.00441,"pRank":21,"nSamples":50,"individualID.1":79,"individualID.2":69,"transmission":false,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":430,"infectionDiff":715,"infectionDiffY":1.9589,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"079_073","label":"SNPs","pAvg":0.00103,"pSD":0.00324,"pScaled":0.00076,"pRank":48,"nSamples":500,"individualID.1":79,"individualID.2":73,"transmission":false,"snpDist":14,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":7,"infectionDiff":62,"infectionDiffY":0.16986,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"079_075","label":"SNPs","pAvg":0.00057,"pSD":0.0018,"pScaled":0.00248,"pRank":50,"nSamples":500,"individualID.1":79,"individualID.2":75,"transmission":false,"snpDist":19,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":513,"infectionDiff":1015,"infectionDiffY":2.78082,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"079_076","label":"SNPs","pAvg":0.00075,"pSD":0.00234,"pScaled":0.00018,"pRank":78,"nSamples":500,"individualID.1":79,"individualID.2":76,"transmission":false,"snpDist":12,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":748,"infectionDiff":688,"infectionDiffY":1.88493,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"079_077","label":"SNPs","pAvg":0.00088,"pSD":0.00274,"pScaled":0.00019,"pRank":70,"nSamples":500,"individualID.1":79,"individualID.2":77,"transmission":false,"snpDist":11,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":-99,"infectionDiff":403,"infectionDiffY":1.10411,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"079_078","label":"SNPs","pAvg":0.02072,"pSD":0.0042,"pScaled":0.00459,"pRank":22,"nSamples":50,"individualID.1":79,"individualID.2":78,"transmission":false,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":591,"infectionDiff":716,"infectionDiffY":1.96164,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"079_081","label":"SNPs","pAvg":0.0035,"pSD":0.00136,"pScaled":0.00087,"pRank":57,"nSamples":50,"individualID.1":79,"individualID.2":81,"transmission":false,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":725,"infectionDiff":1099,"infectionDiffY":3.01096,"timeCat":"4","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"079_082","label":"SNPs","pAvg":0.00228,"pSD":0.00711,"pScaled":0.0005,"pRank":87,"nSamples":500,"individualID.1":79,"individualID.2":82,"transmission":false,"snpDist":13,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":729,"infectionDiff":1176,"infectionDiffY":3.22192,"timeCat":"4","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"079_083","label":"SNPs","pAvg":0.02642,"pSD":0.00613,"pScaled":0.01028,"pRank":10,"nSamples":50,"individualID.1":79,"individualID.2":83,"transmission":false,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":505,"infectionDiff":646,"infectionDiffY":1.76986,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"079_084","label":"SNPs","pAvg":0.82544,"pSD":0.36358,"pScaled":0.41644,"pRank":2,"nSamples":266,"individualID.1":79,"individualID.2":84,"transmission":true,"snpDist":2,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":748,"infectionDiff":694,"infectionDiffY":1.90137,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"079_085","label":"SNPs","pAvg":0.78277,"pSD":0.392,"pScaled":0.26799,"pRank":1,"nSamples":212,"individualID.1":79,"individualID.2":85,"transmission":true,"snpDist":0,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":-140,"infectionDiff":359,"infectionDiffY":0.98356,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"079_087","label":"SNPs","pAvg":0.00179,"pSD":0.0056,"pScaled":0.00146,"pRank":37,"nSamples":500,"individualID.1":79,"individualID.2":87,"transmission":false,"snpDist":16,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":232,"infectionDiff":527,"infectionDiffY":1.44384,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"079_088","label":"SNPs","pAvg":0.00158,"pSD":0.005,"pScaled":0.00031,"pRank":84,"nSamples":500,"individualID.1":79,"individualID.2":88,"transmission":false,"snpDist":12,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":342,"infectionDiff":861,"infectionDiffY":2.3589,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"079_089","label":"SNPs","pAvg":0.66501,"pSD":0.45113,"pScaled":0.21333,"pRank":4,"nSamples":140,"individualID.1":79,"individualID.2":89,"transmission":false,"snpDist":1,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":634,"infectionDiff":698,"infectionDiffY":1.91233,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"079_090","label":"SNPs","pAvg":0.04805,"pSD":0.01288,"pScaled":0.01246,"pRank":7,"nSamples":50,"individualID.1":79,"individualID.2":90,"transmission":false,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":704,"infectionDiff":924,"infectionDiffY":2.53151,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"079_091","label":"SNPs","pAvg":0.83056,"pSD":0.36721,"pScaled":0.41627,"pRank":1,"nSamples":284,"individualID.1":79,"individualID.2":91,"transmission":false,"snpDist":1,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":725,"infectionDiff":515,"infectionDiffY":1.41096,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"079_092","label":"SNPs","pAvg":0.8056,"pSD":0.37882,"pScaled":0.32692,"pRank":1,"nSamples":239,"individualID.1":79,"individualID.2":92,"transmission":false,"snpDist":1,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":772,"infectionDiff":666,"infectionDiffY":1.82466,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"079_093","label":"SNPs","pAvg":0.66067,"pSD":0.45696,"pScaled":0.1795,"pRank":3,"nSamples":140,"individualID.1":79,"individualID.2":93,"transmission":false,"snpDist":2,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":610,"infectionDiff":892,"infectionDiffY":2.44384,"timeCat":"3","Z1":"0","Z2":"1","Z3":"3","Z4":"1","snpClose":true} {"pairID":"079_094","label":"SNPs","pAvg":0.00397,"pSD":0.00128,"pScaled":0.00131,"pRank":44,"nSamples":50,"individualID.1":79,"individualID.2":94,"transmission":false,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":655,"infectionDiff":1164,"infectionDiffY":3.18904,"timeCat":"4","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"079_095","label":"SNPs","pAvg":0.00186,"pSD":0.00581,"pScaled":0.00095,"pRank":38,"nSamples":500,"individualID.1":79,"individualID.2":95,"transmission":false,"snpDist":16,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":238,"infectionDiff":596,"infectionDiffY":1.63288,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"079_096","label":"SNPs","pAvg":0.01238,"pSD":0.00357,"pScaled":0.00433,"pRank":15,"nSamples":50,"individualID.1":79,"individualID.2":96,"transmission":false,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":333,"infectionDiff":827,"infectionDiffY":2.26575,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"079_097","label":"SNPs","pAvg":0.0293,"pSD":0.00879,"pScaled":0.00656,"pRank":16,"nSamples":50,"individualID.1":79,"individualID.2":97,"transmission":false,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":576,"infectionDiff":984,"infectionDiffY":2.69589,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"079_098","label":"SNPs","pAvg":0.62758,"pSD":0.47586,"pScaled":0.17819,"pRank":4,"nSamples":131,"individualID.1":79,"individualID.2":98,"transmission":false,"snpDist":1,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":394,"infectionDiff":757,"infectionDiffY":2.07397,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"079_099","label":"SNPs","pAvg":0.00082,"pSD":0.00253,"pScaled":0.00028,"pRank":61,"nSamples":500,"individualID.1":79,"individualID.2":99,"transmission":false,"snpDist":14,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":377,"infectionDiff":621,"infectionDiffY":1.70137,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"079_100","label":"SNPs","pAvg":0.00637,"pSD":0.00203,"pScaled":0.00188,"pRank":56,"nSamples":50,"individualID.1":79,"individualID.2":100,"transmission":false,"infectionDate.1":"1996-05-10 10:04:22","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1997-11-06 08:23:01","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":576,"infectionDiff":998,"infectionDiffY":2.73425,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"080_023","label":"SNPs","pAvg":0.00069,"pSD":0.00223,"pScaled":0.00031,"pRank":84,"nSamples":500,"individualID.1":80,"individualID.2":23,"transmission":false,"snpDist":13,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":747,"infectionDiff":871,"infectionDiffY":2.3863,"timeCat":"3","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"080_026","label":"SNPs","pAvg":0.001,"pSD":0.00315,"pScaled":0.00035,"pRank":60,"nSamples":500,"individualID.1":80,"individualID.2":26,"transmission":false,"snpDist":12,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":351,"infectionDiff":168,"infectionDiffY":0.46027,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_027","label":"SNPs","pAvg":0.00056,"pSD":0.00178,"pScaled":0.0002,"pRank":81,"nSamples":500,"individualID.1":80,"individualID.2":27,"transmission":false,"snpDist":11,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":523,"infectionDiff":757,"infectionDiffY":2.07397,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_033","label":"SNPs","pAvg":0.00123,"pSD":0.00388,"pScaled":0.00056,"pRank":62,"nSamples":500,"individualID.1":80,"individualID.2":33,"transmission":false,"snpDist":13,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":-32,"infectionDiff":439,"infectionDiffY":1.20274,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_036","label":"SNPs","pAvg":0.015,"pSD":0.0029,"pScaled":0.00406,"pRank":35,"nSamples":50,"individualID.1":80,"individualID.2":36,"transmission":false,"snpDist":5,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1996-04-19 15:10:02","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1997-02-17 02:48:06","sampleDiff":-271,"infectionDiff":47,"infectionDiffY":0.12877,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"080_040","label":"SNPs","pAvg":0.0084,"pSD":0.00269,"pScaled":0.00751,"pRank":42,"nSamples":500,"individualID.1":80,"individualID.2":40,"transmission":false,"snpDist":10,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":-248,"infectionDiff":303,"infectionDiffY":0.83014,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"080_052","label":"SNPs","pAvg":0.00964,"pSD":0.00263,"pScaled":0.00362,"pRank":32,"nSamples":50,"individualID.1":80,"individualID.2":52,"transmission":false,"snpDist":7,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":596,"infectionDiff":319,"infectionDiffY":0.87397,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"080_054","label":"SNPs","pAvg":0.00125,"pSD":0.00389,"pScaled":0.00032,"pRank":63,"nSamples":500,"individualID.1":80,"individualID.2":54,"transmission":false,"snpDist":11,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":454,"infectionDiff":708,"infectionDiffY":1.93973,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_056","label":"SNPs","pAvg":0.00098,"pSD":0.00304,"pScaled":0.00023,"pRank":53,"nSamples":500,"individualID.1":80,"individualID.2":56,"transmission":false,"snpDist":11,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":-139,"infectionDiff":60,"infectionDiffY":0.16438,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_057","label":"SNPs","pAvg":0.00074,"pSD":0.0023,"pScaled":0.00015,"pRank":65,"nSamples":500,"individualID.1":80,"individualID.2":57,"transmission":false,"snpDist":12,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":424,"infectionDiff":710,"infectionDiffY":1.94521,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_058","label":"SNPs","pAvg":0.00074,"pSD":0.00232,"pScaled":0.00073,"pRank":62,"nSamples":500,"individualID.1":80,"individualID.2":58,"transmission":false,"snpDist":11,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":709,"infectionDiff":398,"infectionDiffY":1.09041,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_060","label":"SNPs","pAvg":0.00045,"pSD":0.00144,"pScaled":0.00022,"pRank":91,"nSamples":500,"individualID.1":80,"individualID.2":60,"transmission":false,"snpDist":11,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":751,"infectionDiff":1040,"infectionDiffY":2.84932,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_061","label":"SNPs","pAvg":0.05059,"pSD":0.01402,"pScaled":0.09606,"pRank":2,"nSamples":500,"individualID.1":80,"individualID.2":61,"transmission":false,"snpDist":10,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":544,"infectionDiff":258,"infectionDiffY":0.70685,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"080_066","label":"SNPs","pAvg":0.00123,"pSD":0.00384,"pScaled":0.00033,"pRank":50,"nSamples":500,"individualID.1":80,"individualID.2":66,"transmission":false,"snpDist":12,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1996-03-22 15:36:25","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1996-11-28 06:53:25","sampleDiff":-352,"infectionDiff":19,"infectionDiffY":0.05205,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"080_067","label":"SNPs","pAvg":0.00034,"pSD":0.00109,"pScaled":0.00009,"pRank":94,"nSamples":500,"individualID.1":80,"individualID.2":67,"transmission":false,"snpDist":13,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":770,"infectionDiff":1104,"infectionDiffY":3.02466,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_068","label":"SNPs","pAvg":0.01651,"pSD":0.00622,"pScaled":0.00361,"pRank":25,"nSamples":50,"individualID.1":80,"individualID.2":68,"transmission":false,"snpDist":8,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":376,"infectionDiff":756,"infectionDiffY":2.07123,"timeCat":"3","Z1":"1","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"080_069","label":"SNPs","pAvg":0.02521,"pSD":0.00663,"pScaled":0.00808,"pRank":14,"nSamples":50,"individualID.1":80,"individualID.2":69,"transmission":false,"snpDist":9,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":421,"infectionDiff":783,"infectionDiffY":2.14521,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"080_073","label":"SNPs","pAvg":0.05317,"pSD":0.01454,"pScaled":0.03915,"pRank":3,"nSamples":50,"individualID.1":80,"individualID.2":73,"transmission":false,"snpDist":6,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":-2,"infectionDiff":129,"infectionDiffY":0.35342,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"080_075","label":"SNPs","pAvg":0.00047,"pSD":0.00151,"pScaled":0.00205,"pRank":51,"nSamples":500,"individualID.1":80,"individualID.2":75,"transmission":false,"snpDist":15,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":504,"infectionDiff":1083,"infectionDiffY":2.96712,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_076","label":"SNPs","pAvg":0.00443,"pSD":0.00151,"pScaled":0.00109,"pRank":61,"nSamples":50,"individualID.1":80,"individualID.2":76,"transmission":false,"snpDist":8,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":739,"infectionDiff":756,"infectionDiffY":2.07123,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"080_077","label":"SNPs","pAvg":0.00771,"pSD":0.00224,"pScaled":0.00171,"pRank":37,"nSamples":50,"individualID.1":80,"individualID.2":77,"transmission":false,"snpDist":7,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":-108,"infectionDiff":471,"infectionDiffY":1.29041,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"080_078","label":"SNPs","pAvg":0.0047,"pSD":0.00154,"pScaled":0.00104,"pRank":74,"nSamples":50,"individualID.1":80,"individualID.2":78,"transmission":false,"snpDist":7,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":583,"infectionDiff":784,"infectionDiffY":2.14795,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"080_079","label":"SNPs","pAvg":0.00198,"pSD":0.00622,"pScaled":0.001,"pRank":37,"nSamples":500,"individualID.1":80,"individualID.2":79,"transmission":false,"snpDist":15,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":-9,"infectionDiff":68,"infectionDiffY":0.1863,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_081","label":"SNPs","pAvg":0.00442,"pSD":0.00177,"pScaled":0.0011,"pRank":44,"nSamples":50,"individualID.1":80,"individualID.2":81,"transmission":false,"snpDist":7,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":716,"infectionDiff":1167,"infectionDiffY":3.19726,"timeCat":"4","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"080_082","label":"SNPs","pAvg":0.0068,"pSD":0.00239,"pScaled":0.00148,"pRank":55,"nSamples":50,"individualID.1":80,"individualID.2":82,"transmission":false,"snpDist":9,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":720,"infectionDiff":1244,"infectionDiffY":3.40822,"timeCat":"4","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"080_083","label":"SNPs","pAvg":0.01203,"pSD":0.00343,"pScaled":0.00468,"pRank":24,"nSamples":50,"individualID.1":80,"individualID.2":83,"transmission":false,"snpDist":9,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":496,"infectionDiff":714,"infectionDiffY":1.95616,"timeCat":"2","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"080_084","label":"SNPs","pAvg":0.00105,"pSD":0.00336,"pScaled":0.00053,"pRank":42,"nSamples":500,"individualID.1":80,"individualID.2":84,"transmission":false,"snpDist":17,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":739,"infectionDiff":762,"infectionDiffY":2.08767,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_085","label":"SNPs","pAvg":0.00131,"pSD":0.00418,"pScaled":0.00045,"pRank":40,"nSamples":500,"individualID.1":80,"individualID.2":85,"transmission":false,"snpDist":15,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":-149,"infectionDiff":427,"infectionDiffY":1.16986,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_086","label":"SNPs","pAvg":0.0446,"pSD":0.01282,"pScaled":0.0142,"pRank":7,"nSamples":50,"individualID.1":80,"individualID.2":86,"transmission":true,"snpDist":3,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1996-04-27 16:07:59","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1997-01-07 22:11:07","sampleDiff":-311,"infectionDiff":55,"infectionDiffY":0.15068,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2"} {"pairID":"080_087","label":"SNPs","pAvg":0.90522,"pSD":0.28466,"pScaled":0.73864,"pRank":1,"nSamples":500,"individualID.1":80,"individualID.2":87,"transmission":true,"snpDist":1,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":224,"infectionDiff":594,"infectionDiffY":1.6274,"timeCat":"2","Z1":"1","Z2":"1","Z3":"2","Z4":"2","snpClose":true} {"pairID":"080_088","label":"SNPs","pAvg":0.00482,"pSD":0.00149,"pScaled":0.00093,"pRank":65,"nSamples":50,"individualID.1":80,"individualID.2":88,"transmission":false,"snpDist":8,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":333,"infectionDiff":929,"infectionDiffY":2.54521,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"080_089","label":"SNPs","pAvg":0.00096,"pSD":0.00306,"pScaled":0.00031,"pRank":50,"nSamples":500,"individualID.1":80,"individualID.2":89,"transmission":false,"snpDist":16,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":625,"infectionDiff":766,"infectionDiffY":2.09863,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_090","label":"SNPs","pAvg":0.00096,"pSD":0.00303,"pScaled":0.00025,"pRank":69,"nSamples":500,"individualID.1":80,"individualID.2":90,"transmission":false,"snpDist":17,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":696,"infectionDiff":992,"infectionDiffY":2.71781,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_091","label":"SNPs","pAvg":0.00127,"pSD":0.00402,"pScaled":0.00063,"pRank":45,"nSamples":500,"individualID.1":80,"individualID.2":91,"transmission":false,"snpDist":16,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":717,"infectionDiff":583,"infectionDiffY":1.59726,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_092","label":"SNPs","pAvg":0.00106,"pSD":0.00338,"pScaled":0.00043,"pRank":44,"nSamples":500,"individualID.1":80,"individualID.2":92,"transmission":false,"snpDist":16,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":764,"infectionDiff":734,"infectionDiffY":2.01096,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_093","label":"SNPs","pAvg":0.0015,"pSD":0.00477,"pScaled":0.00041,"pRank":47,"nSamples":500,"individualID.1":80,"individualID.2":93,"transmission":false,"snpDist":17,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":601,"infectionDiff":960,"infectionDiffY":2.63014,"timeCat":"3","Z1":"0","Z2":"1","Z3":"2","Z4":"3","snpClose":false} {"pairID":"080_094","label":"SNPs","pAvg":0.73198,"pSD":0.4416,"pScaled":0.24131,"pRank":3,"nSamples":185,"individualID.1":80,"individualID.2":94,"transmission":false,"snpDist":1,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":647,"infectionDiff":1231,"infectionDiffY":3.3726,"timeCat":"4","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":true} {"pairID":"080_095","label":"SNPs","pAvg":0.78579,"pSD":0.3971,"pScaled":0.3999,"pRank":2,"nSamples":221,"individualID.1":80,"individualID.2":95,"transmission":false,"snpDist":1,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":229,"infectionDiff":663,"infectionDiffY":1.81644,"timeCat":"2","Z1":"1","Z2":"1","Z3":"2","Z4":"2","snpClose":true} {"pairID":"080_096","label":"SNPs","pAvg":0.65224,"pSD":0.46826,"pScaled":0.22843,"pRank":3,"nSamples":140,"individualID.1":80,"individualID.2":96,"transmission":false,"snpDist":1,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":324,"infectionDiff":895,"infectionDiffY":2.45205,"timeCat":"3","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":true} {"pairID":"080_097","label":"SNPs","pAvg":0.00091,"pSD":0.00287,"pScaled":0.0002,"pRank":80,"nSamples":500,"individualID.1":80,"individualID.2":97,"transmission":false,"snpDist":16,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":567,"infectionDiff":1052,"infectionDiffY":2.88219,"timeCat":"3","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_098","label":"SNPs","pAvg":0.00047,"pSD":0.0015,"pScaled":0.00013,"pRank":73,"nSamples":500,"individualID.1":80,"individualID.2":98,"transmission":false,"snpDist":16,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":386,"infectionDiff":824,"infectionDiffY":2.25753,"timeCat":"3","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"080_099","label":"SNPs","pAvg":0.02079,"pSD":0.00589,"pScaled":0.0071,"pRank":14,"nSamples":50,"individualID.1":80,"individualID.2":99,"transmission":false,"snpDist":4,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":368,"infectionDiff":688,"infectionDiffY":1.88493,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"080_100","label":"SNPs","pAvg":0.00522,"pSD":0.00163,"pScaled":0.00154,"pRank":62,"nSamples":50,"individualID.1":80,"individualID.2":100,"transmission":false,"snpDist":4,"infectionDate.1":"1996-03-03 15:59:34","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1997-11-15 01:34:29","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":568,"infectionDiff":1066,"infectionDiffY":2.92055,"timeCat":"3","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"081_082","label":"SNPs","pAvg":0.59352,"pSD":0.48978,"pScaled":0.12921,"pRank":4,"nSamples":122,"individualID.1":81,"individualID.2":82,"transmission":false,"snpDist":2,"infectionDate.1":"1999-05-14 10:24:27","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-11-01 00:16:25","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":4,"infectionDiff":77,"infectionDiffY":0.21096,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":true} {"pairID":"081_094","label":"SNPs","pAvg":0.01712,"pSD":0.0054,"pScaled":0.00564,"pRank":16,"nSamples":50,"individualID.1":81,"individualID.2":94,"transmission":false,"infectionDate.1":"1999-05-14 10:24:27","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-11-01 00:16:25","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":-69,"infectionDiff":65,"infectionDiffY":0.17808,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"083_023","label":"SNPs","pAvg":0.0559,"pSD":0.01314,"pScaled":0.02488,"pRank":6,"nSamples":50,"individualID.1":83,"individualID.2":23,"transmission":false,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":251,"infectionDiff":157,"infectionDiffY":0.43014,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"083_027","label":"SNPs","pAvg":0.04534,"pSD":0.01109,"pScaled":0.01619,"pRank":6,"nSamples":50,"individualID.1":83,"individualID.2":27,"transmission":false,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":28,"infectionDiff":43,"infectionDiffY":0.11781,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"083_060","label":"SNPs","pAvg":0.04009,"pSD":0.00923,"pScaled":0.01942,"pRank":9,"nSamples":50,"individualID.1":83,"individualID.2":60,"transmission":false,"snpDist":6,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":255,"infectionDiff":327,"infectionDiffY":0.89589,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"083_067","label":"SNPs","pAvg":0.02162,"pSD":0.00536,"pScaled":0.00545,"pRank":23,"nSamples":50,"individualID.1":83,"individualID.2":67,"transmission":false,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":274,"infectionDiff":391,"infectionDiffY":1.07123,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"083_068","label":"SNPs","pAvg":0.06878,"pSD":0.01294,"pScaled":0.01503,"pRank":7,"nSamples":50,"individualID.1":83,"individualID.2":68,"transmission":false,"snpDist":3,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":-120,"infectionDiff":42,"infectionDiffY":0.11507,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"1"} {"pairID":"083_069","label":"SNPs","pAvg":0.00791,"pSD":0.00232,"pScaled":0.00254,"pRank":25,"nSamples":50,"individualID.1":83,"individualID.2":69,"transmission":false,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":-75,"infectionDiff":69,"infectionDiffY":0.18904,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"083_075","label":"SNPs","pAvg":0.0064,"pSD":0.00183,"pScaled":0.02778,"pRank":15,"nSamples":500,"individualID.1":83,"individualID.2":75,"transmission":false,"snpDist":10,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":8,"infectionDiff":369,"infectionDiffY":1.01096,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"083_076","label":"SNPs","pAvg":0.0231,"pSD":0.00699,"pScaled":0.00566,"pRank":19,"nSamples":50,"individualID.1":83,"individualID.2":76,"transmission":false,"snpDist":3,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":243,"infectionDiff":42,"infectionDiffY":0.11507,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"083_078","label":"SNPs","pAvg":0.03913,"pSD":0.01012,"pScaled":0.00866,"pRank":15,"nSamples":50,"individualID.1":83,"individualID.2":78,"transmission":false,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":87,"infectionDiff":70,"infectionDiffY":0.19178,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"083_081","label":"SNPs","pAvg":0.00967,"pSD":0.00293,"pScaled":0.00241,"pRank":25,"nSamples":50,"individualID.1":83,"individualID.2":81,"transmission":false,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":220,"infectionDiff":453,"infectionDiffY":1.2411,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"083_082","label":"SNPs","pAvg":0.03486,"pSD":0.00875,"pScaled":0.00759,"pRank":12,"nSamples":50,"individualID.1":83,"individualID.2":82,"transmission":false,"snpDist":4,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":224,"infectionDiff":530,"infectionDiffY":1.45205,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"083_084","label":"SNPs","pAvg":0.00277,"pSD":0.00859,"pScaled":0.0014,"pRank":22,"nSamples":500,"individualID.1":83,"individualID.2":84,"transmission":false,"snpDist":15,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":243,"infectionDiff":48,"infectionDiffY":0.13151,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"083_088","label":"SNPs","pAvg":0.64606,"pSD":0.45237,"pScaled":0.12502,"pRank":1,"nSamples":131,"individualID.1":83,"individualID.2":88,"transmission":true,"snpDist":1,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-163,"infectionDiff":215,"infectionDiffY":0.58904,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"1","snpClose":true} {"pairID":"083_089","label":"SNPs","pAvg":0.0024,"pSD":0.00756,"pScaled":0.00077,"pRank":26,"nSamples":500,"individualID.1":83,"individualID.2":89,"transmission":false,"snpDist":13,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":129,"infectionDiff":52,"infectionDiffY":0.14247,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"083_090","label":"SNPs","pAvg":0.0243,"pSD":0.0069,"pScaled":0.0063,"pRank":12,"nSamples":50,"individualID.1":83,"individualID.2":90,"transmission":false,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":200,"infectionDiff":278,"infectionDiffY":0.76164,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"083_092","label":"SNPs","pAvg":0.00282,"pSD":0.0088,"pScaled":0.00115,"pRank":21,"nSamples":500,"individualID.1":83,"individualID.2":92,"transmission":false,"snpDist":13,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":268,"infectionDiff":20,"infectionDiffY":0.05479,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"083_093","label":"SNPs","pAvg":0.00376,"pSD":0.01162,"pScaled":0.00102,"pRank":25,"nSamples":500,"individualID.1":83,"individualID.2":93,"transmission":false,"snpDist":14,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":105,"infectionDiff":246,"infectionDiffY":0.67397,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"2","snpClose":false} {"pairID":"083_094","label":"SNPs","pAvg":0.00702,"pSD":0.0021,"pScaled":0.00232,"pRank":34,"nSamples":50,"individualID.1":83,"individualID.2":94,"transmission":false,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":151,"infectionDiff":518,"infectionDiffY":1.41918,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"083_096","label":"SNPs","pAvg":0.00939,"pSD":0.00306,"pScaled":0.00329,"pRank":18,"nSamples":50,"individualID.1":83,"individualID.2":96,"transmission":false,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-172,"infectionDiff":181,"infectionDiffY":0.49589,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"083_097","label":"SNPs","pAvg":0.0402,"pSD":0.0104,"pScaled":0.00901,"pRank":14,"nSamples":50,"individualID.1":83,"individualID.2":97,"transmission":false,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":71,"infectionDiff":338,"infectionDiffY":0.92603,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"083_098","label":"SNPs","pAvg":0.00233,"pSD":0.00737,"pScaled":0.00066,"pRank":34,"nSamples":500,"individualID.1":83,"individualID.2":98,"transmission":false,"snpDist":13,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":-110,"infectionDiff":111,"infectionDiffY":0.30411,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"083_100","label":"SNPs","pAvg":0.02698,"pSD":0.00719,"pScaled":0.00795,"pRank":20,"nSamples":50,"individualID.1":83,"individualID.2":100,"transmission":false,"infectionDate.1":"1998-02-15 10:36:35","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-03-25 21:28:52","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":72,"infectionDiff":352,"infectionDiffY":0.96438,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"084_023","label":"SNPs","pAvg":0.00312,"pSD":0.00963,"pScaled":0.00139,"pRank":67,"nSamples":500,"individualID.1":84,"individualID.2":23,"transmission":false,"snpDist":15,"infectionDate.1":"1998-04-04 11:08:25","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1999-11-24 00:46:30","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":8,"infectionDiff":109,"infectionDiffY":0.29863,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"084_060","label":"SNPs","pAvg":0.00283,"pSD":0.00873,"pScaled":0.00137,"pRank":61,"nSamples":500,"individualID.1":84,"individualID.2":60,"transmission":false,"snpDist":17,"infectionDate.1":"1998-04-04 11:08:25","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-11-24 00:46:30","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":12,"infectionDiff":279,"infectionDiffY":0.76438,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"084_067","label":"SNPs","pAvg":0.00114,"pSD":0.0035,"pScaled":0.00029,"pRank":75,"nSamples":500,"individualID.1":84,"individualID.2":67,"transmission":false,"snpDist":19,"infectionDate.1":"1998-04-04 11:08:25","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-11-24 00:46:30","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":31,"infectionDiff":343,"infectionDiffY":0.93973,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"084_069","label":"SNPs","pAvg":0.00173,"pSD":0.00532,"pScaled":0.00055,"pRank":56,"nSamples":500,"individualID.1":84,"individualID.2":69,"transmission":false,"snpDist":15,"infectionDate.1":"1998-04-04 11:08:25","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1999-11-24 00:46:30","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":-318,"infectionDiff":21,"infectionDiffY":0.05753,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"084_075","label":"SNPs","pAvg":0.001,"pSD":0.00311,"pScaled":0.00433,"pRank":38,"nSamples":500,"individualID.1":84,"individualID.2":75,"transmission":false,"snpDist":21,"infectionDate.1":"1998-04-04 11:08:25","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-11-24 00:46:30","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-235,"infectionDiff":321,"infectionDiffY":0.87945,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"084_078","label":"SNPs","pAvg":0.00265,"pSD":0.0081,"pScaled":0.00059,"pRank":83,"nSamples":500,"individualID.1":84,"individualID.2":78,"transmission":false,"snpDist":13,"infectionDate.1":"1998-04-04 11:08:25","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1999-11-24 00:46:30","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":-156,"infectionDiff":22,"infectionDiffY":0.06027,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"084_081","label":"SNPs","pAvg":0.00075,"pSD":0.00233,"pScaled":0.00019,"pRank":94,"nSamples":500,"individualID.1":84,"individualID.2":81,"transmission":false,"snpDist":13,"infectionDate.1":"1998-04-04 11:08:25","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-11-24 00:46:30","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":-23,"infectionDiff":405,"infectionDiffY":1.10959,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"084_082","label":"SNPs","pAvg":0.00486,"pSD":0.0152,"pScaled":0.00106,"pRank":66,"nSamples":500,"individualID.1":84,"individualID.2":82,"transmission":false,"snpDist":15,"infectionDate.1":"1998-04-04 11:08:25","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-11-24 00:46:30","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":-19,"infectionDiff":482,"infectionDiffY":1.32055,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"084_088","label":"SNPs","pAvg":0.00276,"pSD":0.00842,"pScaled":0.00053,"pRank":81,"nSamples":500,"individualID.1":84,"individualID.2":88,"transmission":false,"snpDist":14,"infectionDate.1":"1998-04-04 11:08:25","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-11-24 00:46:30","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-406,"infectionDiff":167,"infectionDiffY":0.45753,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"084_089","label":"SNPs","pAvg":0.07797,"pSD":0.01287,"pScaled":0.02501,"pRank":5,"nSamples":50,"individualID.1":84,"individualID.2":89,"transmission":false,"snpDist":3,"infectionDate.1":"1998-04-04 11:08:25","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1999-11-24 00:46:30","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":-114,"infectionDiff":4,"infectionDiffY":0.01096,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"084_090","label":"SNPs","pAvg":0.08041,"pSD":0.01321,"pScaled":0.02085,"pRank":6,"nSamples":50,"individualID.1":84,"individualID.2":90,"transmission":false,"snpDist":4,"infectionDate.1":"1998-04-04 11:08:25","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-11-24 00:46:30","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":-43,"infectionDiff":230,"infectionDiffY":0.63014,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"084_093","label":"SNPs","pAvg":0.08438,"pSD":0.0174,"pScaled":0.02293,"pRank":6,"nSamples":50,"individualID.1":84,"individualID.2":93,"transmission":false,"snpDist":4,"infectionDate.1":"1998-04-04 11:08:25","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-11-24 00:46:30","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":-138,"infectionDiff":198,"infectionDiffY":0.54247,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"084_094","label":"SNPs","pAvg":0.00089,"pSD":0.00276,"pScaled":0.00029,"pRank":74,"nSamples":500,"individualID.1":84,"individualID.2":94,"transmission":false,"snpDist":18,"infectionDate.1":"1998-04-04 11:08:25","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-11-24 00:46:30","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":-92,"infectionDiff":470,"infectionDiffY":1.28767,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"084_096","label":"SNPs","pAvg":0.00214,"pSD":0.00658,"pScaled":0.00075,"pRank":41,"nSamples":500,"individualID.1":84,"individualID.2":96,"transmission":false,"snpDist":18,"infectionDate.1":"1998-04-04 11:08:25","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-11-24 00:46:30","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-415,"infectionDiff":133,"infectionDiffY":0.36438,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"084_097","label":"SNPs","pAvg":0.04995,"pSD":0.01002,"pScaled":0.01119,"pRank":10,"nSamples":50,"individualID.1":84,"individualID.2":97,"transmission":false,"snpDist":3,"infectionDate.1":"1998-04-04 11:08:25","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-11-24 00:46:30","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":-172,"infectionDiff":290,"infectionDiffY":0.79452,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"084_098","label":"SNPs","pAvg":0.04263,"pSD":0.00882,"pScaled":0.0121,"pRank":6,"nSamples":50,"individualID.1":84,"individualID.2":98,"transmission":false,"snpDist":3,"infectionDate.1":"1998-04-04 11:08:25","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1999-11-24 00:46:30","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":-353,"infectionDiff":63,"infectionDiffY":0.1726,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"084_100","label":"SNPs","pAvg":0.00116,"pSD":0.00358,"pScaled":0.00034,"pRank":81,"nSamples":500,"individualID.1":84,"individualID.2":100,"transmission":false,"snpDist":16,"infectionDate.1":"1998-04-04 11:08:25","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-11-24 00:46:30","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":-171,"infectionDiff":304,"infectionDiffY":0.83288,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"085_023","label":"SNPs","pAvg":0.00282,"pSD":0.00873,"pScaled":0.00125,"pRank":69,"nSamples":500,"individualID.1":85,"individualID.2":23,"transmission":false,"snpDist":13,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":896,"infectionDiff":444,"infectionDiffY":1.21644,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"085_027","label":"SNPs","pAvg":0.00276,"pSD":0.00848,"pScaled":0.00098,"pRank":75,"nSamples":500,"individualID.1":85,"individualID.2":27,"transmission":false,"snpDist":11,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":673,"infectionDiff":330,"infectionDiffY":0.90411,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"085_033","label":"SNPs","pAvg":0.0213,"pSD":0.00528,"pScaled":0.00971,"pRank":7,"nSamples":50,"individualID.1":85,"individualID.2":33,"transmission":false,"snpDist":6,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":117,"infectionDiff":12,"infectionDiffY":0.03288,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"085_054","label":"SNPs","pAvg":0.00219,"pSD":0.00677,"pScaled":0.00057,"pRank":60,"nSamples":500,"individualID.1":85,"individualID.2":54,"transmission":false,"snpDist":15,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":603,"infectionDiff":281,"infectionDiffY":0.76986,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"085_057","label":"SNPs","pAvg":0.00101,"pSD":0.00311,"pScaled":0.0002,"pRank":60,"nSamples":500,"individualID.1":85,"individualID.2":57,"transmission":false,"snpDist":16,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":574,"infectionDiff":283,"infectionDiffY":0.77534,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"085_060","label":"SNPs","pAvg":0.0025,"pSD":0.0078,"pScaled":0.00121,"pRank":65,"nSamples":500,"individualID.1":85,"individualID.2":60,"transmission":false,"snpDist":15,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":900,"infectionDiff":614,"infectionDiffY":1.68219,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"085_067","label":"SNPs","pAvg":0.00074,"pSD":0.0023,"pScaled":0.00019,"pRank":86,"nSamples":500,"individualID.1":85,"individualID.2":67,"transmission":false,"snpDist":17,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":919,"infectionDiff":677,"infectionDiffY":1.85479,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"085_068","label":"SNPs","pAvg":0.00558,"pSD":0.01723,"pScaled":0.00122,"pRank":63,"nSamples":500,"individualID.1":85,"individualID.2":68,"transmission":false,"snpDist":12,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":525,"infectionDiff":329,"infectionDiffY":0.90137,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"085_069","label":"SNPs","pAvg":0.002,"pSD":0.00612,"pScaled":0.00064,"pRank":51,"nSamples":500,"individualID.1":85,"individualID.2":69,"transmission":false,"snpDist":13,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":570,"infectionDiff":356,"infectionDiffY":0.97534,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"085_075","label":"SNPs","pAvg":0.00087,"pSD":0.0027,"pScaled":0.00379,"pRank":43,"nSamples":500,"individualID.1":85,"individualID.2":75,"transmission":false,"snpDist":19,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":653,"infectionDiff":656,"infectionDiffY":1.79726,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"085_076","label":"SNPs","pAvg":0.00109,"pSD":0.00334,"pScaled":0.00027,"pRank":74,"nSamples":500,"individualID.1":85,"individualID.2":76,"transmission":false,"snpDist":12,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":888,"infectionDiff":329,"infectionDiffY":0.90137,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"085_077","label":"SNPs","pAvg":0.00095,"pSD":0.00291,"pScaled":0.00021,"pRank":69,"nSamples":500,"individualID.1":85,"individualID.2":77,"transmission":false,"snpDist":11,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":41,"infectionDiff":44,"infectionDiffY":0.12055,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"085_078","label":"SNPs","pAvg":0.00307,"pSD":0.00943,"pScaled":0.00068,"pRank":81,"nSamples":500,"individualID.1":85,"individualID.2":78,"transmission":false,"snpDist":11,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":732,"infectionDiff":357,"infectionDiffY":0.97808,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"085_081","label":"SNPs","pAvg":0.00065,"pSD":0.00205,"pScaled":0.00016,"pRank":96,"nSamples":500,"individualID.1":85,"individualID.2":81,"transmission":false,"snpDist":11,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":865,"infectionDiff":740,"infectionDiffY":2.0274,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"085_082","label":"SNPs","pAvg":0.00295,"pSD":0.00926,"pScaled":0.00064,"pRank":85,"nSamples":500,"individualID.1":85,"individualID.2":82,"transmission":false,"snpDist":13,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":869,"infectionDiff":817,"infectionDiffY":2.23836,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"085_083","label":"SNPs","pAvg":0.00292,"pSD":0.00908,"pScaled":0.00114,"pRank":69,"nSamples":500,"individualID.1":85,"individualID.2":83,"transmission":false,"snpDist":13,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":645,"infectionDiff":287,"infectionDiffY":0.7863,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"085_084","label":"SNPs","pAvg":0.83787,"pSD":0.3514,"pScaled":0.42272,"pRank":1,"nSamples":284,"individualID.1":85,"individualID.2":84,"transmission":false,"snpDist":2,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":888,"infectionDiff":335,"infectionDiffY":0.91781,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"085_087","label":"SNPs","pAvg":0.00217,"pSD":0.00672,"pScaled":0.00177,"pRank":29,"nSamples":500,"individualID.1":85,"individualID.2":87,"transmission":false,"snpDist":16,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":373,"infectionDiff":168,"infectionDiffY":0.46027,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"085_088","label":"SNPs","pAvg":0.00245,"pSD":0.00767,"pScaled":0.00047,"pRank":83,"nSamples":500,"individualID.1":85,"individualID.2":88,"transmission":false,"snpDist":12,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":482,"infectionDiff":502,"infectionDiffY":1.37534,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"085_089","label":"SNPs","pAvg":0.7121,"pSD":0.42457,"pScaled":0.22844,"pRank":3,"nSamples":158,"individualID.1":85,"individualID.2":89,"transmission":true,"snpDist":1,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":774,"infectionDiff":339,"infectionDiffY":0.92877,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"085_090","label":"SNPs","pAvg":0.72205,"pSD":0.42658,"pScaled":0.1872,"pRank":2,"nSamples":167,"individualID.1":85,"individualID.2":90,"transmission":true,"snpDist":2,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":845,"infectionDiff":565,"infectionDiffY":1.54795,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"085_091","label":"SNPs","pAvg":0.82247,"pSD":0.36971,"pScaled":0.41221,"pRank":2,"nSamples":266,"individualID.1":85,"individualID.2":91,"transmission":true,"snpDist":1,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":866,"infectionDiff":156,"infectionDiffY":0.4274,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"085_092","label":"SNPs","pAvg":0.72391,"pSD":0.42368,"pScaled":0.29377,"pRank":3,"nSamples":167,"individualID.1":85,"individualID.2":92,"transmission":true,"snpDist":1,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":913,"infectionDiff":307,"infectionDiffY":0.8411,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"085_093","label":"SNPs","pAvg":0.64755,"pSD":0.45044,"pScaled":0.17594,"pRank":4,"nSamples":131,"individualID.1":85,"individualID.2":93,"transmission":true,"snpDist":2,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":750,"infectionDiff":533,"infectionDiffY":1.46027,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"1","snpClose":true} {"pairID":"085_094","label":"SNPs","pAvg":0.0006,"pSD":0.00191,"pScaled":0.0002,"pRank":81,"nSamples":500,"individualID.1":85,"individualID.2":94,"transmission":false,"snpDist":16,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":796,"infectionDiff":805,"infectionDiffY":2.20548,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"085_095","label":"SNPs","pAvg":0.00214,"pSD":0.00667,"pScaled":0.00109,"pRank":30,"nSamples":500,"individualID.1":85,"individualID.2":95,"transmission":false,"snpDist":16,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":378,"infectionDiff":236,"infectionDiffY":0.64658,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"085_096","label":"SNPs","pAvg":0.00156,"pSD":0.00486,"pScaled":0.00055,"pRank":61,"nSamples":500,"individualID.1":85,"individualID.2":96,"transmission":false,"snpDist":16,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":473,"infectionDiff":468,"infectionDiffY":1.28219,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"085_097","label":"SNPs","pAvg":0.65864,"pSD":0.45968,"pScaled":0.14757,"pRank":3,"nSamples":140,"individualID.1":85,"individualID.2":97,"transmission":false,"snpDist":1,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":716,"infectionDiff":625,"infectionDiffY":1.71233,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"085_098","label":"SNPs","pAvg":0.69573,"pSD":0.44865,"pScaled":0.19754,"pRank":2,"nSamples":158,"individualID.1":85,"individualID.2":98,"transmission":false,"snpDist":1,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":535,"infectionDiff":397,"infectionDiffY":1.08767,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"085_099","label":"SNPs","pAvg":0.00093,"pSD":0.00287,"pScaled":0.00032,"pRank":57,"nSamples":500,"individualID.1":85,"individualID.2":99,"transmission":false,"snpDist":14,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":518,"infectionDiff":261,"infectionDiffY":0.71507,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"085_100","label":"SNPs","pAvg":0.00073,"pSD":0.00225,"pScaled":0.00021,"pRank":89,"nSamples":500,"individualID.1":85,"individualID.2":100,"transmission":false,"snpDist":14,"infectionDate.1":"1997-05-04 13:01:47","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1997-06-18 21:43:24","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":717,"infectionDiff":639,"infectionDiffY":1.75068,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"086_023","label":"SNPs","pAvg":0.00731,"pSD":0.00213,"pScaled":0.00325,"pRank":52,"nSamples":50,"individualID.1":86,"individualID.2":23,"transmission":false,"snpDist":10,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":1058,"infectionDiff":816,"infectionDiffY":2.23562,"timeCat":"3","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"086_026","label":"SNPs","pAvg":0.027,"pSD":0.0056,"pScaled":0.00949,"pRank":8,"nSamples":50,"individualID.1":86,"individualID.2":26,"transmission":false,"snpDist":9,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1996-08-18 14:02:06","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1998-10-31 19:53:19","sampleDiff":662,"infectionDiff":113,"infectionDiffY":0.30959,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"086_027","label":"SNPs","pAvg":0.00752,"pSD":0.00202,"pScaled":0.00268,"pRank":59,"nSamples":50,"individualID.1":86,"individualID.2":27,"transmission":false,"snpDist":8,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":835,"infectionDiff":702,"infectionDiffY":1.92329,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"086_033","label":"SNPs","pAvg":0.04556,"pSD":0.0129,"pScaled":0.02078,"pRank":5,"nSamples":50,"individualID.1":86,"individualID.2":33,"transmission":false,"snpDist":10,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1997-05-16 16:31:02","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1997-10-13 18:53:18","sampleDiff":279,"infectionDiff":384,"infectionDiffY":1.05205,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"086_040","label":"SNPs","pAvg":0.01113,"pSD":0.0024,"pScaled":0.00996,"pRank":28,"nSamples":500,"individualID.1":86,"individualID.2":40,"transmission":false,"snpDist":7,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1996-12-31 15:18:39","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1997-03-11 14:22:26","sampleDiff":63,"infectionDiff":248,"infectionDiffY":0.67945,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"086_052","label":"SNPs","pAvg":0.02661,"pSD":0.00596,"pScaled":0.00998,"pRank":13,"nSamples":50,"individualID.1":86,"individualID.2":52,"transmission":false,"snpDist":4,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1997-01-16 15:24:25","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-07-03 14:35:56","sampleDiff":907,"infectionDiff":264,"infectionDiffY":0.72329,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"086_054","label":"SNPs","pAvg":0.04575,"pSD":0.01286,"pScaled":0.01191,"pRank":6,"nSamples":50,"individualID.1":86,"individualID.2":54,"transmission":false,"snpDist":8,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":765,"infectionDiff":653,"infectionDiffY":1.78904,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"086_056","label":"SNPs","pAvg":0.02558,"pSD":0.0049,"pScaled":0.00611,"pRank":13,"nSamples":50,"individualID.1":86,"individualID.2":56,"transmission":false,"snpDist":8,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1996-05-02 10:43:38","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1997-06-29 09:25:54","sampleDiff":172,"infectionDiff":5,"infectionDiffY":0.0137,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"086_057","label":"SNPs","pAvg":0.02125,"pSD":0.00415,"pScaled":0.00425,"pRank":16,"nSamples":50,"individualID.1":86,"individualID.2":57,"transmission":false,"snpDist":9,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":736,"infectionDiff":655,"infectionDiffY":1.79452,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"086_058","label":"SNPs","pAvg":0.02681,"pSD":0.00545,"pScaled":0.02645,"pRank":13,"nSamples":500,"individualID.1":86,"individualID.2":58,"transmission":false,"snpDist":10,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1997-04-06 02:35:55","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-10-25 09:14:08","sampleDiff":1020,"infectionDiff":343,"infectionDiffY":0.93973,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"086_060","label":"SNPs","pAvg":0.00585,"pSD":0.00211,"pScaled":0.00284,"pRank":53,"nSamples":50,"individualID.1":86,"individualID.2":60,"transmission":false,"snpDist":8,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":1062,"infectionDiff":985,"infectionDiffY":2.69863,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"086_061","label":"SNPs","pAvg":0.08261,"pSD":0.01433,"pScaled":0.15685,"pRank":1,"nSamples":500,"individualID.1":86,"individualID.2":61,"transmission":false,"snpDist":7,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1996-11-16 22:08:58","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-05-12 16:33:19","sampleDiff":855,"infectionDiff":203,"infectionDiffY":0.55616,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"086_067","label":"SNPs","pAvg":0.01526,"pSD":0.00435,"pScaled":0.00385,"pRank":33,"nSamples":50,"individualID.1":86,"individualID.2":67,"transmission":false,"snpDist":10,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":1081,"infectionDiff":1049,"infectionDiffY":2.87397,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"086_068","label":"SNPs","pAvg":0.01506,"pSD":0.00344,"pScaled":0.00329,"pRank":27,"nSamples":50,"individualID.1":86,"individualID.2":68,"transmission":false,"snpDist":5,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":687,"infectionDiff":701,"infectionDiffY":1.92055,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"086_069","label":"SNPs","pAvg":0.07596,"pSD":0.01781,"pScaled":0.02435,"pRank":4,"nSamples":50,"individualID.1":86,"individualID.2":69,"transmission":false,"snpDist":6,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":732,"infectionDiff":728,"infectionDiffY":1.99452,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"086_073","label":"SNPs","pAvg":0.03491,"pSD":0.00821,"pScaled":0.02571,"pRank":4,"nSamples":50,"individualID.1":86,"individualID.2":73,"transmission":false,"snpDist":3,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1996-07-10 23:14:09","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1997-11-12 22:53:27","sampleDiff":309,"infectionDiff":74,"infectionDiffY":0.20274,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2"} {"pairID":"086_075","label":"SNPs","pAvg":0.00064,"pSD":0.00205,"pScaled":0.00279,"pRank":47,"nSamples":500,"individualID.1":86,"individualID.2":75,"transmission":false,"snpDist":12,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":815,"infectionDiff":1028,"infectionDiffY":2.81644,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"086_076","label":"SNPs","pAvg":0.02447,"pSD":0.00635,"pScaled":0.006,"pRank":16,"nSamples":50,"individualID.1":86,"individualID.2":76,"transmission":false,"snpDist":5,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":1050,"infectionDiff":701,"infectionDiffY":1.92055,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"086_077","label":"SNPs","pAvg":0.02063,"pSD":0.00451,"pScaled":0.00456,"pRank":20,"nSamples":50,"individualID.1":86,"individualID.2":77,"transmission":false,"snpDist":4,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1997-06-17 21:43:24","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1997-07-30 00:47:32","sampleDiff":203,"infectionDiff":416,"infectionDiffY":1.13973,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"086_078","label":"SNPs","pAvg":0.00867,"pSD":0.00208,"pScaled":0.00192,"pRank":52,"nSamples":50,"individualID.1":86,"individualID.2":78,"transmission":false,"snpDist":4,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":894,"infectionDiff":729,"infectionDiffY":1.99726,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"086_079","label":"SNPs","pAvg":0.00189,"pSD":0.0058,"pScaled":0.00095,"pRank":40,"nSamples":500,"individualID.1":86,"individualID.2":79,"transmission":false,"snpDist":13,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1996-05-10 10:04:22","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1997-11-06 08:23:01","sampleDiff":302,"infectionDiff":13,"infectionDiffY":0.03562,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"086_081","label":"SNPs","pAvg":0.00396,"pSD":0.00128,"pScaled":0.00099,"pRank":48,"nSamples":50,"individualID.1":86,"individualID.2":81,"transmission":false,"snpDist":4,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":1027,"infectionDiff":1112,"infectionDiffY":3.04658,"timeCat":"4","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"086_082","label":"SNPs","pAvg":0.00703,"pSD":0.00238,"pScaled":0.00153,"pRank":54,"nSamples":50,"individualID.1":86,"individualID.2":82,"transmission":false,"snpDist":6,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":1031,"infectionDiff":1189,"infectionDiffY":3.25753,"timeCat":"4","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"086_083","label":"SNPs","pAvg":0.00814,"pSD":0.00193,"pScaled":0.00317,"pRank":44,"nSamples":50,"individualID.1":86,"individualID.2":83,"transmission":false,"snpDist":6,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":807,"infectionDiff":659,"infectionDiffY":1.80548,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"086_084","label":"SNPs","pAvg":0.00142,"pSD":0.00439,"pScaled":0.00072,"pRank":36,"nSamples":500,"individualID.1":86,"individualID.2":84,"transmission":false,"snpDist":15,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":1050,"infectionDiff":707,"infectionDiffY":1.93699,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"086_085","label":"SNPs","pAvg":0.00175,"pSD":0.00546,"pScaled":0.0006,"pRank":30,"nSamples":500,"individualID.1":86,"individualID.2":85,"transmission":false,"snpDist":13,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1997-05-04 13:01:47","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1997-06-18 21:43:24","sampleDiff":162,"infectionDiff":372,"infectionDiffY":1.01918,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"086_087","label":"SNPs","pAvg":0.06988,"pSD":0.0152,"pScaled":0.05702,"pRank":2,"nSamples":50,"individualID.1":86,"individualID.2":87,"transmission":false,"snpDist":4,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":535,"infectionDiff":539,"infectionDiffY":1.47671,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"086_088","label":"SNPs","pAvg":0.00664,"pSD":0.00217,"pScaled":0.00129,"pRank":51,"nSamples":50,"individualID.1":86,"individualID.2":88,"transmission":false,"snpDist":5,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":644,"infectionDiff":874,"infectionDiffY":2.39452,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"086_089","label":"SNPs","pAvg":0.00171,"pSD":0.0054,"pScaled":0.00055,"pRank":35,"nSamples":500,"individualID.1":86,"individualID.2":89,"transmission":false,"snpDist":14,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":936,"infectionDiff":711,"infectionDiffY":1.94795,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"086_090","label":"SNPs","pAvg":0.00123,"pSD":0.00392,"pScaled":0.00032,"pRank":62,"nSamples":500,"individualID.1":86,"individualID.2":90,"transmission":false,"snpDist":15,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":1007,"infectionDiff":937,"infectionDiffY":2.56712,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"086_091","label":"SNPs","pAvg":0.00166,"pSD":0.00523,"pScaled":0.00083,"pRank":43,"nSamples":500,"individualID.1":86,"individualID.2":91,"transmission":false,"snpDist":14,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1997-10-07 17:26:10","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-11-01 17:29:56","sampleDiff":1028,"infectionDiff":528,"infectionDiffY":1.44658,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"086_092","label":"SNPs","pAvg":0.00137,"pSD":0.00426,"pScaled":0.00056,"pRank":39,"nSamples":500,"individualID.1":86,"individualID.2":92,"transmission":false,"snpDist":14,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":1075,"infectionDiff":679,"infectionDiffY":1.86027,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"086_093","label":"SNPs","pAvg":0.00134,"pSD":0.00422,"pScaled":0.00036,"pRank":48,"nSamples":500,"individualID.1":86,"individualID.2":93,"transmission":false,"snpDist":15,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":912,"infectionDiff":905,"infectionDiffY":2.47945,"timeCat":"3","Z1":"1","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"086_094","label":"SNPs","pAvg":0.01577,"pSD":0.00541,"pScaled":0.0052,"pRank":19,"nSamples":50,"individualID.1":86,"individualID.2":94,"transmission":false,"snpDist":4,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":958,"infectionDiff":1176,"infectionDiffY":3.22192,"timeCat":"4","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"086_095","label":"SNPs","pAvg":0.07178,"pSD":0.01615,"pScaled":0.03653,"pRank":3,"nSamples":50,"individualID.1":86,"individualID.2":95,"transmission":false,"snpDist":4,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":540,"infectionDiff":608,"infectionDiffY":1.66575,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"1"} {"pairID":"086_096","label":"SNPs","pAvg":0.04941,"pSD":0.01461,"pScaled":0.0173,"pRank":7,"nSamples":50,"individualID.1":86,"individualID.2":96,"transmission":false,"snpDist":4,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":635,"infectionDiff":840,"infectionDiffY":2.30137,"timeCat":"3","Z1":"0","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"086_097","label":"SNPs","pAvg":0.00123,"pSD":0.00392,"pScaled":0.00028,"pRank":72,"nSamples":500,"individualID.1":86,"individualID.2":97,"transmission":false,"snpDist":14,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":878,"infectionDiff":997,"infectionDiffY":2.73151,"timeCat":"3","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"086_098","label":"SNPs","pAvg":0.00063,"pSD":0.002,"pScaled":0.00018,"pRank":69,"nSamples":500,"individualID.1":86,"individualID.2":98,"transmission":false,"snpDist":14,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":697,"infectionDiff":769,"infectionDiffY":2.10685,"timeCat":"3","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"086_099","label":"SNPs","pAvg":0.73886,"pSD":0.43029,"pScaled":0.25242,"pRank":2,"nSamples":185,"individualID.1":86,"individualID.2":99,"transmission":false,"snpDist":1,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":680,"infectionDiff":633,"infectionDiffY":1.73425,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"086_100","label":"SNPs","pAvg":0.76768,"pSD":0.41917,"pScaled":0.22622,"pRank":2,"nSamples":212,"individualID.1":86,"individualID.2":100,"transmission":false,"snpDist":1,"infectionDate.1":"1996-04-27 16:07:59","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1997-01-07 22:11:07","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":879,"infectionDiff":1011,"infectionDiffY":2.76986,"timeCat":"3","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"087_023","label":"SNPs","pAvg":0.00123,"pSD":0.00384,"pScaled":0.00055,"pRank":76,"nSamples":500,"individualID.1":87,"individualID.2":23,"transmission":false,"snpDist":14,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":523,"infectionDiff":277,"infectionDiffY":0.7589,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"087_027","label":"SNPs","pAvg":0.001,"pSD":0.00314,"pScaled":0.00036,"pRank":78,"nSamples":500,"individualID.1":87,"individualID.2":27,"transmission":false,"snpDist":12,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":300,"infectionDiff":163,"infectionDiffY":0.44658,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"087_054","label":"SNPs","pAvg":0.00453,"pSD":0.01438,"pScaled":0.00118,"pRank":50,"nSamples":500,"individualID.1":87,"individualID.2":54,"transmission":false,"snpDist":12,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":231,"infectionDiff":113,"infectionDiffY":0.30959,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"087_057","label":"SNPs","pAvg":0.00262,"pSD":0.00818,"pScaled":0.00052,"pRank":47,"nSamples":500,"individualID.1":87,"individualID.2":57,"transmission":false,"snpDist":13,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":201,"infectionDiff":115,"infectionDiffY":0.31507,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"087_060","label":"SNPs","pAvg":0.00068,"pSD":0.00211,"pScaled":0.00033,"pRank":84,"nSamples":500,"individualID.1":87,"individualID.2":60,"transmission":false,"snpDist":12,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":527,"infectionDiff":446,"infectionDiffY":1.22192,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"087_067","label":"SNPs","pAvg":0.00216,"pSD":0.0067,"pScaled":0.00055,"pRank":67,"nSamples":500,"individualID.1":87,"individualID.2":67,"transmission":false,"snpDist":14,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":546,"infectionDiff":510,"infectionDiffY":1.39726,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"087_068","label":"SNPs","pAvg":0.02844,"pSD":0.00687,"pScaled":0.00621,"pRank":16,"nSamples":50,"individualID.1":87,"individualID.2":68,"transmission":false,"snpDist":9,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":153,"infectionDiff":162,"infectionDiffY":0.44384,"timeCat":"1","Z1":"1","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"087_069","label":"SNPs","pAvg":0.07241,"pSD":0.01787,"pScaled":0.02321,"pRank":5,"nSamples":50,"individualID.1":87,"individualID.2":69,"transmission":false,"snpDist":10,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":197,"infectionDiff":189,"infectionDiffY":0.51781,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"087_075","label":"SNPs","pAvg":0.00064,"pSD":0.00201,"pScaled":0.0028,"pRank":46,"nSamples":500,"individualID.1":87,"individualID.2":75,"transmission":false,"snpDist":16,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":281,"infectionDiff":488,"infectionDiffY":1.33699,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"087_076","label":"SNPs","pAvg":0.0231,"pSD":0.00699,"pScaled":0.00566,"pRank":19,"nSamples":50,"individualID.1":87,"individualID.2":76,"transmission":false,"snpDist":9,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":515,"infectionDiff":162,"infectionDiffY":0.44384,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"087_078","label":"SNPs","pAvg":0.00854,"pSD":0.00253,"pScaled":0.00189,"pRank":53,"nSamples":50,"individualID.1":87,"individualID.2":78,"transmission":false,"snpDist":8,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":359,"infectionDiff":190,"infectionDiffY":0.52055,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"087_081","label":"SNPs","pAvg":0.00967,"pSD":0.00293,"pScaled":0.00241,"pRank":25,"nSamples":50,"individualID.1":87,"individualID.2":81,"transmission":false,"snpDist":8,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":492,"infectionDiff":572,"infectionDiffY":1.56712,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"087_082","label":"SNPs","pAvg":0.01455,"pSD":0.00451,"pScaled":0.00317,"pRank":27,"nSamples":50,"individualID.1":87,"individualID.2":82,"transmission":false,"snpDist":10,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":496,"infectionDiff":650,"infectionDiffY":1.78082,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"087_083","label":"SNPs","pAvg":0.01497,"pSD":0.00327,"pScaled":0.00582,"pRank":21,"nSamples":50,"individualID.1":87,"individualID.2":83,"transmission":false,"snpDist":10,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":272,"infectionDiff":119,"infectionDiffY":0.32603,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"087_084","label":"SNPs","pAvg":0.00186,"pSD":0.00582,"pScaled":0.00094,"pRank":27,"nSamples":500,"individualID.1":87,"individualID.2":84,"transmission":false,"snpDist":18,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":515,"infectionDiff":167,"infectionDiffY":0.45753,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"087_088","label":"SNPs","pAvg":0.00871,"pSD":0.00287,"pScaled":0.00168,"pRank":39,"nSamples":50,"individualID.1":87,"individualID.2":88,"transmission":false,"snpDist":9,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":110,"infectionDiff":335,"infectionDiffY":0.91781,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"087_089","label":"SNPs","pAvg":0.00167,"pSD":0.00529,"pScaled":0.00054,"pRank":36,"nSamples":500,"individualID.1":87,"individualID.2":89,"transmission":false,"snpDist":17,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":401,"infectionDiff":171,"infectionDiffY":0.46849,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"087_090","label":"SNPs","pAvg":0.00129,"pSD":0.00403,"pScaled":0.00033,"pRank":61,"nSamples":500,"individualID.1":87,"individualID.2":90,"transmission":false,"snpDist":18,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":472,"infectionDiff":398,"infectionDiffY":1.09041,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"087_092","label":"SNPs","pAvg":0.00189,"pSD":0.00595,"pScaled":0.00077,"pRank":26,"nSamples":500,"individualID.1":87,"individualID.2":92,"transmission":false,"snpDist":17,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":540,"infectionDiff":140,"infectionDiffY":0.38356,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"087_093","label":"SNPs","pAvg":0.00258,"pSD":0.008,"pScaled":0.0007,"pRank":31,"nSamples":500,"individualID.1":87,"individualID.2":93,"transmission":false,"snpDist":18,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":377,"infectionDiff":365,"infectionDiffY":1,"timeCat":"1","Z1":"0","Z2":"1","Z3":"2","Z4":"3","snpClose":false} {"pairID":"087_094","label":"SNPs","pAvg":0.73797,"pSD":0.43175,"pScaled":0.24329,"pRank":2,"nSamples":185,"individualID.1":87,"individualID.2":94,"transmission":false,"snpDist":2,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":423,"infectionDiff":637,"infectionDiffY":1.74521,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":true} {"pairID":"087_095","label":"SNPs","pAvg":0.86415,"pSD":0.32148,"pScaled":0.43977,"pRank":1,"nSamples":329,"individualID.1":87,"individualID.2":95,"transmission":true,"snpDist":2,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":5,"infectionDiff":69,"infectionDiffY":0.18904,"timeCat":"1","Z1":"1","Z2":"1","Z3":"2","Z4":"1","snpClose":true} {"pairID":"087_096","label":"SNPs","pAvg":0.79871,"pSD":0.38284,"pScaled":0.27973,"pRank":1,"nSamples":230,"individualID.1":87,"individualID.2":96,"transmission":true,"snpDist":0,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":100,"infectionDiff":301,"infectionDiffY":0.82466,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":true} {"pairID":"087_097","label":"SNPs","pAvg":0.00122,"pSD":0.0038,"pScaled":0.00027,"pRank":73,"nSamples":500,"individualID.1":87,"individualID.2":97,"transmission":false,"snpDist":17,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":343,"infectionDiff":457,"infectionDiffY":1.25205,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"087_098","label":"SNPs","pAvg":0.00086,"pSD":0.00274,"pScaled":0.00024,"pRank":63,"nSamples":500,"individualID.1":87,"individualID.2":98,"transmission":false,"snpDist":17,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":162,"infectionDiff":230,"infectionDiffY":0.63014,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"087_099","label":"SNPs","pAvg":0.04328,"pSD":0.01139,"pScaled":0.01479,"pRank":8,"nSamples":50,"individualID.1":87,"individualID.2":99,"transmission":false,"snpDist":5,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":145,"infectionDiff":94,"infectionDiffY":0.25753,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"087_100","label":"SNPs","pAvg":0.01982,"pSD":0.00557,"pScaled":0.00584,"pRank":23,"nSamples":50,"individualID.1":87,"individualID.2":100,"transmission":false,"snpDist":5,"infectionDate.1":"1997-10-19 01:38:36","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1998-06-26 16:36:22","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":344,"infectionDiff":472,"infectionDiffY":1.29315,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"088_060","label":"SNPs","pAvg":0.0509,"pSD":0.00903,"pScaled":0.02466,"pRank":5,"nSamples":50,"individualID.1":88,"individualID.2":60,"transmission":false,"snpDist":5,"infectionDate.1":"1998-09-18 20:11:45","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1998-10-14 07:18:33","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":417,"infectionDiff":111,"infectionDiffY":0.30411,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"088_067","label":"SNPs","pAvg":0.02741,"pSD":0.00559,"pScaled":0.00692,"pRank":19,"nSamples":50,"individualID.1":88,"individualID.2":67,"transmission":false,"snpDist":7,"infectionDate.1":"1998-09-18 20:11:45","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1998-10-14 07:18:33","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":437,"infectionDiff":175,"infectionDiffY":0.47945,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"088_075","label":"SNPs","pAvg":0.01113,"pSD":0.0024,"pScaled":0.04834,"pRank":4,"nSamples":500,"individualID.1":88,"individualID.2":75,"transmission":false,"snpDist":9,"infectionDate.1":"1998-09-18 20:11:45","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1998-10-14 07:18:33","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":171,"infectionDiff":154,"infectionDiffY":0.42192,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"088_081","label":"SNPs","pAvg":0.68708,"pSD":0.46136,"pScaled":0.17111,"pRank":1,"nSamples":158,"individualID.1":88,"individualID.2":81,"transmission":false,"snpDist":1,"infectionDate.1":"1998-09-18 20:11:45","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1998-10-14 07:18:33","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":383,"infectionDiff":238,"infectionDiffY":0.65205,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":true} {"pairID":"088_082","label":"SNPs","pAvg":0.04513,"pSD":0.01,"pScaled":0.00982,"pRank":8,"nSamples":50,"individualID.1":88,"individualID.2":82,"transmission":false,"snpDist":3,"infectionDate.1":"1998-09-18 20:11:45","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1998-10-14 07:18:33","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":387,"infectionDiff":315,"infectionDiffY":0.86301,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"088_090","label":"SNPs","pAvg":0.00305,"pSD":0.00933,"pScaled":0.00079,"pRank":46,"nSamples":500,"individualID.1":88,"individualID.2":90,"transmission":false,"snpDist":13,"infectionDate.1":"1998-09-18 20:11:45","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1998-10-14 07:18:33","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":362,"infectionDiff":63,"infectionDiffY":0.1726,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"088_093","label":"SNPs","pAvg":0.00338,"pSD":0.01043,"pScaled":0.00092,"pRank":26,"nSamples":500,"individualID.1":88,"individualID.2":93,"transmission":false,"snpDist":13,"infectionDate.1":"1998-09-18 20:11:45","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1998-10-14 07:18:33","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":268,"infectionDiff":31,"infectionDiffY":0.08493,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"088_094","label":"SNPs","pAvg":0.01052,"pSD":0.00242,"pScaled":0.00347,"pRank":25,"nSamples":50,"individualID.1":88,"individualID.2":94,"transmission":false,"snpDist":9,"infectionDate.1":"1998-09-18 20:11:45","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1998-10-14 07:18:33","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":313,"infectionDiff":302,"infectionDiffY":0.8274,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"088_097","label":"SNPs","pAvg":0.00526,"pSD":0.01606,"pScaled":0.00118,"pRank":46,"nSamples":500,"individualID.1":88,"individualID.2":97,"transmission":false,"snpDist":12,"infectionDate.1":"1998-09-18 20:11:45","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1998-10-14 07:18:33","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":234,"infectionDiff":122,"infectionDiffY":0.33425,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"088_100","label":"SNPs","pAvg":0.02753,"pSD":0.00522,"pScaled":0.00811,"pRank":15,"nSamples":50,"individualID.1":88,"individualID.2":100,"transmission":false,"snpDist":6,"infectionDate.1":"1998-09-18 20:11:45","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1998-10-14 07:18:33","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":234,"infectionDiff":137,"infectionDiffY":0.37534,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"089_023","label":"SNPs","pAvg":0.00371,"pSD":0.01144,"pScaled":0.00165,"pRank":64,"nSamples":500,"individualID.1":89,"individualID.2":23,"transmission":false,"snpDist":14,"infectionDate.1":"1998-04-08 04:18:17","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1999-08-01 23:56:04","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":122,"infectionDiff":106,"infectionDiffY":0.29041,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"089_060","label":"SNPs","pAvg":0.00318,"pSD":0.00982,"pScaled":0.00154,"pRank":59,"nSamples":500,"individualID.1":89,"individualID.2":60,"transmission":false,"snpDist":16,"infectionDate.1":"1998-04-08 04:18:17","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-08-01 23:56:04","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":126,"infectionDiff":275,"infectionDiffY":0.75342,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"089_067","label":"SNPs","pAvg":0.00099,"pSD":0.00305,"pScaled":0.00025,"pRank":76,"nSamples":500,"individualID.1":89,"individualID.2":67,"transmission":false,"snpDist":18,"infectionDate.1":"1998-04-08 04:18:17","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-08-01 23:56:04","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":145,"infectionDiff":339,"infectionDiffY":0.92877,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"089_069","label":"SNPs","pAvg":0.002,"pSD":0.00612,"pScaled":0.00064,"pRank":51,"nSamples":500,"individualID.1":89,"individualID.2":69,"transmission":false,"snpDist":14,"infectionDate.1":"1998-04-08 04:18:17","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1999-08-01 23:56:04","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":-204,"infectionDiff":17,"infectionDiffY":0.04658,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"089_075","label":"SNPs","pAvg":0.00114,"pSD":0.00352,"pScaled":0.00496,"pRank":32,"nSamples":500,"individualID.1":89,"individualID.2":75,"transmission":false,"snpDist":20,"infectionDate.1":"1998-04-08 04:18:17","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-08-01 23:56:04","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-121,"infectionDiff":317,"infectionDiffY":0.86849,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"089_078","label":"SNPs","pAvg":0.00307,"pSD":0.00943,"pScaled":0.00068,"pRank":81,"nSamples":500,"individualID.1":89,"individualID.2":78,"transmission":false,"snpDist":12,"infectionDate.1":"1998-04-08 04:18:17","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1999-08-01 23:56:04","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":-42,"infectionDiff":19,"infectionDiffY":0.05205,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"089_081","label":"SNPs","pAvg":0.00087,"pSD":0.00268,"pScaled":0.00022,"pRank":92,"nSamples":500,"individualID.1":89,"individualID.2":81,"transmission":false,"snpDist":12,"infectionDate.1":"1998-04-08 04:18:17","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-08-01 23:56:04","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":91,"infectionDiff":401,"infectionDiffY":1.09863,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"089_082","label":"SNPs","pAvg":0.00415,"pSD":0.01273,"pScaled":0.0009,"pRank":78,"nSamples":500,"individualID.1":89,"individualID.2":82,"transmission":false,"snpDist":14,"infectionDate.1":"1998-04-08 04:18:17","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-08-01 23:56:04","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":95,"infectionDiff":479,"infectionDiffY":1.31233,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"089_088","label":"SNPs","pAvg":0.00316,"pSD":0.00971,"pScaled":0.00061,"pRank":79,"nSamples":500,"individualID.1":89,"individualID.2":88,"transmission":false,"snpDist":12,"infectionDate.1":"1998-04-08 04:18:17","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-08-01 23:56:04","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-292,"infectionDiff":164,"infectionDiffY":0.44932,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"089_090","label":"SNPs","pAvg":0.52103,"pSD":0.45693,"pScaled":0.13508,"pRank":5,"nSamples":95,"individualID.1":89,"individualID.2":90,"transmission":false,"snpDist":1,"infectionDate.1":"1998-04-08 04:18:17","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-08-01 23:56:04","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":71,"infectionDiff":226,"infectionDiffY":0.61918,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"089_093","label":"SNPs","pAvg":0.67715,"pSD":0.43486,"pScaled":0.18398,"pRank":2,"nSamples":140,"individualID.1":89,"individualID.2":93,"transmission":false,"snpDist":1,"infectionDate.1":"1998-04-08 04:18:17","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-08-01 23:56:04","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":-24,"infectionDiff":194,"infectionDiffY":0.53151,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"1","snpClose":true} {"pairID":"089_094","label":"SNPs","pAvg":0.00079,"pSD":0.00245,"pScaled":0.00026,"pRank":77,"nSamples":500,"individualID.1":89,"individualID.2":94,"transmission":false,"snpDist":17,"infectionDate.1":"1998-04-08 04:18:17","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-08-01 23:56:04","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":22,"infectionDiff":466,"infectionDiffY":1.27671,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"089_096","label":"SNPs","pAvg":0.00195,"pSD":0.00601,"pScaled":0.00068,"pRank":47,"nSamples":500,"individualID.1":89,"individualID.2":96,"transmission":false,"snpDist":17,"infectionDate.1":"1998-04-08 04:18:17","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-08-01 23:56:04","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-301,"infectionDiff":130,"infectionDiffY":0.35616,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"089_097","label":"SNPs","pAvg":0.63988,"pSD":0.46016,"pScaled":0.14337,"pRank":4,"nSamples":131,"individualID.1":89,"individualID.2":97,"transmission":true,"snpDist":0,"infectionDate.1":"1998-04-08 04:18:17","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-08-01 23:56:04","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":-58,"infectionDiff":286,"infectionDiffY":0.78356,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"089_098","label":"SNPs","pAvg":0.57929,"pSD":0.47439,"pScaled":0.16448,"pRank":5,"nSamples":113,"individualID.1":89,"individualID.2":98,"transmission":true,"snpDist":0,"infectionDate.1":"1998-04-08 04:18:17","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1999-08-01 23:56:04","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":-239,"infectionDiff":59,"infectionDiffY":0.16164,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"089_100","label":"SNPs","pAvg":0.001,"pSD":0.00306,"pScaled":0.00029,"pRank":83,"nSamples":500,"individualID.1":89,"individualID.2":100,"transmission":false,"snpDist":15,"infectionDate.1":"1998-04-08 04:18:17","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-08-01 23:56:04","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":-57,"infectionDiff":301,"infectionDiffY":0.82466,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"090_060","label":"SNPs","pAvg":0.00318,"pSD":0.00982,"pScaled":0.00154,"pRank":59,"nSamples":500,"individualID.1":90,"individualID.2":60,"transmission":false,"snpDist":17,"infectionDate.1":"1998-11-20 14:40:54","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-10-11 14:45:53","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":55,"infectionDiff":48,"infectionDiffY":0.13151,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"090_067","label":"SNPs","pAvg":0.00991,"pSD":0.0021,"pScaled":0.0025,"pRank":44,"nSamples":50,"individualID.1":90,"individualID.2":67,"transmission":false,"infectionDate.1":"1998-11-20 14:40:54","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-10-11 14:45:53","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":74,"infectionDiff":112,"infectionDiffY":0.30685,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"090_075","label":"SNPs","pAvg":0.00111,"pSD":0.00344,"pScaled":0.00483,"pRank":33,"nSamples":500,"individualID.1":90,"individualID.2":75,"transmission":false,"snpDist":21,"infectionDate.1":"1998-11-20 14:40:54","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-10-11 14:45:53","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-191,"infectionDiff":91,"infectionDiffY":0.24932,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"090_081","label":"SNPs","pAvg":0.01118,"pSD":0.00293,"pScaled":0.00278,"pRank":20,"nSamples":50,"individualID.1":90,"individualID.2":81,"transmission":false,"infectionDate.1":"1998-11-20 14:40:54","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-10-11 14:45:53","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":20,"infectionDiff":175,"infectionDiffY":0.47945,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"090_082","label":"SNPs","pAvg":0.00518,"pSD":0.01585,"pScaled":0.00113,"pRank":65,"nSamples":500,"individualID.1":90,"individualID.2":82,"transmission":false,"snpDist":15,"infectionDate.1":"1998-11-20 14:40:54","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-10-11 14:45:53","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":24,"infectionDiff":252,"infectionDiffY":0.69041,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"090_094","label":"SNPs","pAvg":0.01052,"pSD":0.00242,"pScaled":0.00347,"pRank":25,"nSamples":50,"individualID.1":90,"individualID.2":94,"transmission":false,"infectionDate.1":"1998-11-20 14:40:54","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-10-11 14:45:53","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":-49,"infectionDiff":240,"infectionDiffY":0.65753,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"090_097","label":"SNPs","pAvg":0.05649,"pSD":0.01083,"pScaled":0.01266,"pRank":7,"nSamples":50,"individualID.1":90,"individualID.2":97,"transmission":false,"infectionDate.1":"1998-11-20 14:40:54","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-10-11 14:45:53","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":-129,"infectionDiff":60,"infectionDiffY":0.16438,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"090_100","label":"SNPs","pAvg":0.00995,"pSD":0.00207,"pScaled":0.00293,"pRank":38,"nSamples":50,"individualID.1":90,"individualID.2":100,"transmission":false,"infectionDate.1":"1998-11-20 14:40:54","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-10-11 14:45:53","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":-128,"infectionDiff":74,"infectionDiffY":0.20274,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"091_023","label":"SNPs","pAvg":0.006,"pSD":0.01838,"pScaled":0.00267,"pRank":56,"nSamples":500,"individualID.1":91,"individualID.2":23,"transmission":false,"snpDist":14,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":30,"infectionDiff":288,"infectionDiffY":0.78904,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"091_027","label":"SNPs","pAvg":0.00461,"pSD":0.01416,"pScaled":0.00165,"pRank":69,"nSamples":500,"individualID.1":91,"individualID.2":27,"transmission":false,"snpDist":12,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":-193,"infectionDiff":174,"infectionDiffY":0.47671,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"091_054","label":"SNPs","pAvg":0.00588,"pSD":0.01808,"pScaled":0.00153,"pRank":35,"nSamples":500,"individualID.1":91,"individualID.2":54,"transmission":false,"snpDist":16,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":-262,"infectionDiff":125,"infectionDiffY":0.34247,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"091_057","label":"SNPs","pAvg":0.00273,"pSD":0.00836,"pScaled":0.00055,"pRank":46,"nSamples":500,"individualID.1":91,"individualID.2":57,"transmission":false,"snpDist":17,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":-292,"infectionDiff":127,"infectionDiffY":0.34795,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"091_060","label":"SNPs","pAvg":0.00405,"pSD":0.01258,"pScaled":0.00196,"pRank":58,"nSamples":500,"individualID.1":91,"individualID.2":60,"transmission":false,"snpDist":16,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":34,"infectionDiff":457,"infectionDiffY":1.25205,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"091_067","label":"SNPs","pAvg":0.00207,"pSD":0.00637,"pScaled":0.00052,"pRank":69,"nSamples":500,"individualID.1":91,"individualID.2":67,"transmission":false,"snpDist":18,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":53,"infectionDiff":521,"infectionDiffY":1.4274,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"091_068","label":"SNPs","pAvg":0.00924,"pSD":0.02838,"pScaled":0.00202,"pRank":39,"nSamples":500,"individualID.1":91,"individualID.2":68,"transmission":false,"snpDist":13,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":-340,"infectionDiff":173,"infectionDiffY":0.47397,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"1","snpClose":false} {"pairID":"091_069","label":"SNPs","pAvg":0.002,"pSD":0.00612,"pScaled":0.00064,"pRank":51,"nSamples":500,"individualID.1":91,"individualID.2":69,"transmission":false,"snpDist":14,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":-296,"infectionDiff":200,"infectionDiffY":0.54795,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"091_075","label":"SNPs","pAvg":0.00087,"pSD":0.00269,"pScaled":0.00378,"pRank":45,"nSamples":500,"individualID.1":91,"individualID.2":75,"transmission":false,"snpDist":20,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-212,"infectionDiff":500,"infectionDiffY":1.36986,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"091_076","label":"SNPs","pAvg":0.00307,"pSD":0.00944,"pScaled":0.00075,"pRank":70,"nSamples":500,"individualID.1":91,"individualID.2":76,"transmission":false,"snpDist":13,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":22,"infectionDiff":173,"infectionDiffY":0.47397,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"091_078","label":"SNPs","pAvg":0.00509,"pSD":0.01559,"pScaled":0.00113,"pRank":72,"nSamples":500,"individualID.1":91,"individualID.2":78,"transmission":false,"snpDist":12,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":-134,"infectionDiff":201,"infectionDiffY":0.55068,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"091_081","label":"SNPs","pAvg":0.00087,"pSD":0.00268,"pScaled":0.00022,"pRank":92,"nSamples":500,"individualID.1":91,"individualID.2":81,"transmission":false,"snpDist":12,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":-1,"infectionDiff":584,"infectionDiffY":1.6,"timeCat":"2","Z1":"1","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"091_082","label":"SNPs","pAvg":0.00676,"pSD":0.02078,"pScaled":0.00147,"pRank":56,"nSamples":500,"individualID.1":91,"individualID.2":82,"transmission":false,"snpDist":14,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":3,"infectionDiff":661,"infectionDiffY":1.81096,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"091_083","label":"SNPs","pAvg":0.00485,"pSD":0.01506,"pScaled":0.00189,"pRank":62,"nSamples":500,"individualID.1":91,"individualID.2":83,"transmission":false,"snpDist":14,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":-221,"infectionDiff":131,"infectionDiffY":0.3589,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"1","snpClose":false} {"pairID":"091_084","label":"SNPs","pAvg":0.05082,"pSD":0.00901,"pScaled":0.02564,"pRank":4,"nSamples":50,"individualID.1":91,"individualID.2":84,"transmission":false,"snpDist":3,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":22,"infectionDiff":179,"infectionDiffY":0.49041,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"091_087","label":"SNPs","pAvg":0.00217,"pSD":0.00672,"pScaled":0.00177,"pRank":29,"nSamples":500,"individualID.1":91,"individualID.2":87,"transmission":false,"snpDist":17,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1997-10-19 01:38:36","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1998-06-26 16:36:22","sampleDiff":-493,"infectionDiff":11,"infectionDiffY":0.03014,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"091_088","label":"SNPs","pAvg":0.00523,"pSD":0.01602,"pScaled":0.00101,"pRank":59,"nSamples":500,"individualID.1":91,"individualID.2":88,"transmission":false,"snpDist":13,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-383,"infectionDiff":346,"infectionDiffY":0.94795,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":false} {"pairID":"091_089","label":"SNPs","pAvg":0.71758,"pSD":0.43337,"pScaled":0.23019,"pRank":2,"nSamples":167,"individualID.1":91,"individualID.2":89,"transmission":false,"snpDist":2,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":-92,"infectionDiff":182,"infectionDiffY":0.49863,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"091_090","label":"SNPs","pAvg":0.04457,"pSD":0.01228,"pScaled":0.01156,"pRank":8,"nSamples":50,"individualID.1":91,"individualID.2":90,"transmission":false,"snpDist":3,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":-21,"infectionDiff":409,"infectionDiffY":1.12055,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"091_092","label":"SNPs","pAvg":0.75486,"pSD":0.41711,"pScaled":0.30633,"pRank":2,"nSamples":194,"individualID.1":91,"individualID.2":92,"transmission":false,"snpDist":2,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":47,"infectionDiff":151,"infectionDiffY":0.4137,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"091_093","label":"SNPs","pAvg":0.04882,"pSD":0.01237,"pScaled":0.01326,"pRank":7,"nSamples":50,"individualID.1":91,"individualID.2":93,"transmission":false,"snpDist":3,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":-116,"infectionDiff":377,"infectionDiffY":1.03288,"timeCat":"2","Z1":"1","Z2":"1","Z3":"3","Z4":"2"} {"pairID":"091_094","label":"SNPs","pAvg":0.00079,"pSD":0.00245,"pScaled":0.00026,"pRank":77,"nSamples":500,"individualID.1":91,"individualID.2":94,"transmission":false,"snpDist":17,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":-70,"infectionDiff":648,"infectionDiffY":1.77534,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"091_095","label":"SNPs","pAvg":0.00214,"pSD":0.00667,"pScaled":0.00109,"pRank":30,"nSamples":500,"individualID.1":91,"individualID.2":95,"transmission":false,"snpDist":17,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1997-12-26 23:59:12","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1998-07-02 02:22:57","sampleDiff":-488,"infectionDiff":80,"infectionDiffY":0.21918,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"091_096","label":"SNPs","pAvg":0.00195,"pSD":0.00601,"pScaled":0.00068,"pRank":47,"nSamples":500,"individualID.1":91,"individualID.2":96,"transmission":false,"snpDist":17,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-393,"infectionDiff":312,"infectionDiffY":0.85479,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"091_097","label":"SNPs","pAvg":0.66942,"pSD":0.44523,"pScaled":0.14999,"pRank":2,"nSamples":140,"individualID.1":91,"individualID.2":97,"transmission":false,"snpDist":2,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":-150,"infectionDiff":468,"infectionDiffY":1.28219,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"091_098","label":"SNPs","pAvg":0.65379,"pSD":0.46618,"pScaled":0.18563,"pRank":3,"nSamples":140,"individualID.1":91,"individualID.2":98,"transmission":false,"snpDist":2,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":-331,"infectionDiff":241,"infectionDiffY":0.66027,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"091_099","label":"SNPs","pAvg":0.00093,"pSD":0.00287,"pScaled":0.00032,"pRank":57,"nSamples":500,"individualID.1":91,"individualID.2":99,"transmission":false,"snpDist":15,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":-348,"infectionDiff":105,"infectionDiffY":0.28767,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"091_100","label":"SNPs","pAvg":0.00203,"pSD":0.00626,"pScaled":0.0006,"pRank":75,"nSamples":500,"individualID.1":91,"individualID.2":100,"transmission":false,"snpDist":15,"infectionDate.1":"1997-10-07 17:26:10","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-11-01 17:29:56","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":-149,"infectionDiff":483,"infectionDiffY":1.32329,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"092_023","label":"SNPs","pAvg":0.00312,"pSD":0.00963,"pScaled":0.00139,"pRank":67,"nSamples":500,"individualID.1":92,"individualID.2":23,"transmission":false,"snpDist":14,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":-17,"infectionDiff":137,"infectionDiffY":0.37534,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"2","snpClose":false} {"pairID":"092_027","label":"SNPs","pAvg":0.00318,"pSD":0.00975,"pScaled":0.00113,"pRank":74,"nSamples":500,"individualID.1":92,"individualID.2":27,"transmission":false,"snpDist":12,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":-240,"infectionDiff":23,"infectionDiffY":0.06301,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"092_060","label":"SNPs","pAvg":0.00283,"pSD":0.00873,"pScaled":0.00137,"pRank":61,"nSamples":500,"individualID.1":92,"individualID.2":60,"transmission":false,"snpDist":16,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":-13,"infectionDiff":306,"infectionDiffY":0.83836,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"092_067","label":"SNPs","pAvg":0.00086,"pSD":0.00267,"pScaled":0.00022,"pRank":82,"nSamples":500,"individualID.1":92,"individualID.2":67,"transmission":false,"snpDist":18,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":6,"infectionDiff":370,"infectionDiffY":1.0137,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"092_068","label":"SNPs","pAvg":0.00648,"pSD":0.02011,"pScaled":0.00142,"pRank":59,"nSamples":500,"individualID.1":92,"individualID.2":68,"transmission":false,"snpDist":13,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":-387,"infectionDiff":22,"infectionDiffY":0.06027,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"092_069","label":"SNPs","pAvg":0.00173,"pSD":0.00532,"pScaled":0.00055,"pRank":56,"nSamples":500,"individualID.1":92,"individualID.2":69,"transmission":false,"snpDist":14,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":-343,"infectionDiff":49,"infectionDiffY":0.13425,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"092_075","label":"SNPs","pAvg":0.00097,"pSD":0.00302,"pScaled":0.00419,"pRank":41,"nSamples":500,"individualID.1":92,"individualID.2":75,"transmission":false,"snpDist":20,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-259,"infectionDiff":349,"infectionDiffY":0.95616,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"092_076","label":"SNPs","pAvg":0.00094,"pSD":0.0029,"pScaled":0.00023,"pRank":76,"nSamples":500,"individualID.1":92,"individualID.2":76,"transmission":false,"snpDist":13,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":-25,"infectionDiff":22,"infectionDiffY":0.06027,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"092_078","label":"SNPs","pAvg":0.00265,"pSD":0.0081,"pScaled":0.00059,"pRank":83,"nSamples":500,"individualID.1":92,"individualID.2":78,"transmission":false,"snpDist":12,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":-181,"infectionDiff":50,"infectionDiffY":0.13699,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"092_081","label":"SNPs","pAvg":0.00075,"pSD":0.00233,"pScaled":0.00019,"pRank":94,"nSamples":500,"individualID.1":92,"individualID.2":81,"transmission":false,"snpDist":12,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":-48,"infectionDiff":433,"infectionDiffY":1.1863,"timeCat":"2","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"092_082","label":"SNPs","pAvg":0.00486,"pSD":0.0152,"pScaled":0.00106,"pRank":66,"nSamples":500,"individualID.1":92,"individualID.2":82,"transmission":false,"snpDist":14,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":-44,"infectionDiff":510,"infectionDiffY":1.39726,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"092_084","label":"SNPs","pAvg":0.09072,"pSD":0.01606,"pScaled":0.04577,"pRank":3,"nSamples":50,"individualID.1":92,"individualID.2":84,"transmission":false,"snpDist":3,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":-25,"infectionDiff":28,"infectionDiffY":0.07671,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"092_088","label":"SNPs","pAvg":0.00276,"pSD":0.00842,"pScaled":0.00053,"pRank":81,"nSamples":500,"individualID.1":92,"individualID.2":88,"transmission":false,"snpDist":12,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-430,"infectionDiff":195,"infectionDiffY":0.53425,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"092_089","label":"SNPs","pAvg":0.7508,"pSD":0.41064,"pScaled":0.24085,"pRank":1,"nSamples":185,"individualID.1":92,"individualID.2":89,"transmission":false,"snpDist":0,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":-139,"infectionDiff":31,"infectionDiffY":0.08493,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"092_090","label":"SNPs","pAvg":0.67158,"pSD":0.44228,"pScaled":0.17412,"pRank":3,"nSamples":140,"individualID.1":92,"individualID.2":90,"transmission":false,"snpDist":1,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":-68,"infectionDiff":258,"infectionDiffY":0.70685,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":true} {"pairID":"092_093","label":"SNPs","pAvg":0.71025,"pSD":0.42731,"pScaled":0.19297,"pRank":1,"nSamples":158,"individualID.1":92,"individualID.2":93,"transmission":false,"snpDist":1,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":-163,"infectionDiff":226,"infectionDiffY":0.61918,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"1","snpClose":true} {"pairID":"092_094","label":"SNPs","pAvg":0.00089,"pSD":0.00276,"pScaled":0.00029,"pRank":74,"nSamples":500,"individualID.1":92,"individualID.2":94,"transmission":false,"snpDist":17,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":-117,"infectionDiff":497,"infectionDiffY":1.36164,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"092_096","label":"SNPs","pAvg":0.00214,"pSD":0.00658,"pScaled":0.00075,"pRank":41,"nSamples":500,"individualID.1":92,"individualID.2":96,"transmission":false,"snpDist":17,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-440,"infectionDiff":161,"infectionDiffY":0.4411,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"092_097","label":"SNPs","pAvg":0.38309,"pSD":0.45638,"pScaled":0.08583,"pRank":6,"nSamples":77,"individualID.1":92,"individualID.2":97,"transmission":false,"snpDist":0,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":-197,"infectionDiff":317,"infectionDiffY":0.86849,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"2","snpClose":true} {"pairID":"092_098","label":"SNPs","pAvg":0.69703,"pSD":0.44671,"pScaled":0.19791,"pRank":1,"nSamples":158,"individualID.1":92,"individualID.2":98,"transmission":false,"snpDist":0,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":-378,"infectionDiff":90,"infectionDiffY":0.24658,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"092_100","label":"SNPs","pAvg":0.00116,"pSD":0.00358,"pScaled":0.00034,"pRank":81,"nSamples":500,"individualID.1":92,"individualID.2":100,"transmission":false,"snpDist":15,"infectionDate.1":"1998-03-07 19:10:07","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-12-18 17:45:19","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":-196,"infectionDiff":332,"infectionDiffY":0.90959,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"093_060","label":"SNPs","pAvg":0.00278,"pSD":0.00863,"pScaled":0.00135,"pRank":64,"nSamples":500,"individualID.1":93,"individualID.2":60,"transmission":false,"snpDist":17,"infectionDate.1":"1998-10-19 11:22:04","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1999-07-08 20:29:43","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":150,"infectionDiff":81,"infectionDiffY":0.22192,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"093_067","label":"SNPs","pAvg":0.00091,"pSD":0.00288,"pScaled":0.00023,"pRank":79,"nSamples":500,"individualID.1":93,"individualID.2":67,"transmission":false,"snpDist":19,"infectionDate.1":"1998-10-19 11:22:04","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-07-08 20:29:43","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":169,"infectionDiff":145,"infectionDiffY":0.39726,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"093_075","label":"SNPs","pAvg":0.00096,"pSD":0.00304,"pScaled":0.00417,"pRank":42,"nSamples":500,"individualID.1":93,"individualID.2":75,"transmission":false,"snpDist":21,"infectionDate.1":"1998-10-19 11:22:04","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-07-08 20:29:43","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-97,"infectionDiff":123,"infectionDiffY":0.33699,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"093_081","label":"SNPs","pAvg":0.00141,"pSD":0.00437,"pScaled":0.00035,"pRank":91,"nSamples":500,"individualID.1":93,"individualID.2":81,"transmission":false,"snpDist":13,"infectionDate.1":"1998-10-19 11:22:04","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-07-08 20:29:43","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":115,"infectionDiff":207,"infectionDiffY":0.56712,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"093_082","label":"SNPs","pAvg":0.00444,"pSD":0.01398,"pScaled":0.00097,"pRank":74,"nSamples":500,"individualID.1":93,"individualID.2":82,"transmission":false,"snpDist":15,"infectionDate.1":"1998-10-19 11:22:04","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-07-08 20:29:43","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":119,"infectionDiff":284,"infectionDiffY":0.77808,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"093_090","label":"SNPs","pAvg":0.72468,"pSD":0.42254,"pScaled":0.18788,"pRank":1,"nSamples":167,"individualID.1":93,"individualID.2":90,"transmission":false,"snpDist":2,"infectionDate.1":"1998-10-19 11:22:04","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1999-07-08 20:29:43","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":95,"infectionDiff":32,"infectionDiffY":0.08767,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":true} {"pairID":"093_094","label":"SNPs","pAvg":0.00084,"pSD":0.00266,"pScaled":0.00028,"pRank":76,"nSamples":500,"individualID.1":93,"individualID.2":94,"transmission":false,"snpDist":18,"infectionDate.1":"1998-10-19 11:22:04","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-07-08 20:29:43","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":46,"infectionDiff":272,"infectionDiffY":0.74521,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"093_097","label":"SNPs","pAvg":0.68086,"pSD":0.45065,"pScaled":0.15255,"pRank":1,"nSamples":149,"individualID.1":93,"individualID.2":97,"transmission":false,"snpDist":1,"infectionDate.1":"1998-10-19 11:22:04","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1999-07-08 20:29:43","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":-34,"infectionDiff":92,"infectionDiffY":0.25205,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"2","snpClose":true} {"pairID":"093_100","label":"SNPs","pAvg":0.00084,"pSD":0.00265,"pScaled":0.00025,"pRank":87,"nSamples":500,"individualID.1":93,"individualID.2":100,"transmission":false,"snpDist":16,"infectionDate.1":"1998-10-19 11:22:04","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-07-08 20:29:43","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":-33,"infectionDiff":106,"infectionDiffY":0.29041,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"094_082","label":"SNPs","pAvg":0.01113,"pSD":0.0022,"pScaled":0.00242,"pRank":33,"nSamples":50,"individualID.1":94,"individualID.2":82,"transmission":false,"snpDist":10,"infectionDate.1":"1999-07-18 02:56:50","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-08-23 18:03:47","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":73,"infectionDiff":13,"infectionDiffY":0.03562,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"095_023","label":"SNPs","pAvg":0.00123,"pSD":0.00384,"pScaled":0.00055,"pRank":76,"nSamples":500,"individualID.1":95,"individualID.2":23,"transmission":false,"snpDist":14,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":518,"infectionDiff":208,"infectionDiffY":0.56986,"timeCat":"1","Z1":"0","Z2":"0","Z3":"2","Z4":"3","snpClose":false} {"pairID":"095_027","label":"SNPs","pAvg":0.001,"pSD":0.00314,"pScaled":0.00036,"pRank":78,"nSamples":500,"individualID.1":95,"individualID.2":27,"transmission":false,"snpDist":12,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":294,"infectionDiff":94,"infectionDiffY":0.25753,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"095_054","label":"SNPs","pAvg":0.00453,"pSD":0.01438,"pScaled":0.00118,"pRank":50,"nSamples":500,"individualID.1":95,"individualID.2":54,"transmission":false,"snpDist":12,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":225,"infectionDiff":44,"infectionDiffY":0.12055,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"2","snpClose":false} {"pairID":"095_057","label":"SNPs","pAvg":0.00262,"pSD":0.00818,"pScaled":0.00052,"pRank":47,"nSamples":500,"individualID.1":95,"individualID.2":57,"transmission":false,"snpDist":13,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":195,"infectionDiff":46,"infectionDiffY":0.12603,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"095_060","label":"SNPs","pAvg":0.00068,"pSD":0.00211,"pScaled":0.00033,"pRank":84,"nSamples":500,"individualID.1":95,"individualID.2":60,"transmission":false,"snpDist":12,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":522,"infectionDiff":377,"infectionDiffY":1.03288,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"095_067","label":"SNPs","pAvg":0.00216,"pSD":0.0067,"pScaled":0.00055,"pRank":67,"nSamples":500,"individualID.1":95,"individualID.2":67,"transmission":false,"snpDist":14,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":541,"infectionDiff":441,"infectionDiffY":1.20822,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2","snpClose":false} {"pairID":"095_068","label":"SNPs","pAvg":0.02844,"pSD":0.00687,"pScaled":0.00621,"pRank":16,"nSamples":50,"individualID.1":95,"individualID.2":68,"transmission":false,"snpDist":9,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":147,"infectionDiff":93,"infectionDiffY":0.25479,"timeCat":"1","Z1":"1","Z2":"1","Z3":"2","Z4":"3"} {"pairID":"095_069","label":"SNPs","pAvg":0.07241,"pSD":0.01787,"pScaled":0.02321,"pRank":5,"nSamples":50,"individualID.1":95,"individualID.2":69,"transmission":false,"snpDist":10,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":192,"infectionDiff":120,"infectionDiffY":0.32877,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"1"} {"pairID":"095_075","label":"SNPs","pAvg":0.00062,"pSD":0.00195,"pScaled":0.0027,"pRank":48,"nSamples":500,"individualID.1":95,"individualID.2":75,"transmission":false,"snpDist":16,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":275,"infectionDiff":419,"infectionDiffY":1.14795,"timeCat":"2","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"095_076","label":"SNPs","pAvg":0.0231,"pSD":0.00699,"pScaled":0.00566,"pRank":19,"nSamples":50,"individualID.1":95,"individualID.2":76,"transmission":false,"snpDist":9,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":510,"infectionDiff":93,"infectionDiffY":0.25479,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"095_078","label":"SNPs","pAvg":0.00854,"pSD":0.00253,"pScaled":0.00189,"pRank":53,"nSamples":50,"individualID.1":95,"individualID.2":78,"transmission":false,"snpDist":8,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":354,"infectionDiff":121,"infectionDiffY":0.33151,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"095_081","label":"SNPs","pAvg":0.00967,"pSD":0.00293,"pScaled":0.00241,"pRank":25,"nSamples":50,"individualID.1":95,"individualID.2":81,"transmission":false,"snpDist":8,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":487,"infectionDiff":503,"infectionDiffY":1.37808,"timeCat":"2","Z1":"0","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"095_082","label":"SNPs","pAvg":0.01455,"pSD":0.00451,"pScaled":0.00317,"pRank":27,"nSamples":50,"individualID.1":95,"individualID.2":82,"transmission":false,"snpDist":10,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":491,"infectionDiff":581,"infectionDiffY":1.59178,"timeCat":"2","Z1":"1","Z2":"1","Z3":"4","Z4":"3"} {"pairID":"095_083","label":"SNPs","pAvg":0.01497,"pSD":0.00327,"pScaled":0.00582,"pRank":21,"nSamples":50,"individualID.1":95,"individualID.2":83,"transmission":false,"snpDist":9,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":267,"infectionDiff":50,"infectionDiffY":0.13699,"timeCat":"1","Z1":"1","Z2":"0","Z3":"2","Z4":"3"} {"pairID":"095_084","label":"SNPs","pAvg":0.00186,"pSD":0.00582,"pScaled":0.00094,"pRank":27,"nSamples":500,"individualID.1":95,"individualID.2":84,"transmission":false,"snpDist":18,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":510,"infectionDiff":98,"infectionDiffY":0.26849,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"095_088","label":"SNPs","pAvg":0.00871,"pSD":0.00287,"pScaled":0.00168,"pRank":39,"nSamples":50,"individualID.1":95,"individualID.2":88,"transmission":false,"snpDist":9,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":104,"infectionDiff":266,"infectionDiffY":0.72877,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3"} {"pairID":"095_089","label":"SNPs","pAvg":0.00167,"pSD":0.00529,"pScaled":0.00054,"pRank":36,"nSamples":500,"individualID.1":95,"individualID.2":89,"transmission":false,"snpDist":17,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":396,"infectionDiff":102,"infectionDiffY":0.27945,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"095_090","label":"SNPs","pAvg":0.00168,"pSD":0.0053,"pScaled":0.00044,"pRank":54,"nSamples":500,"individualID.1":95,"individualID.2":90,"transmission":false,"snpDist":18,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":467,"infectionDiff":329,"infectionDiffY":0.90137,"timeCat":"1","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"095_092","label":"SNPs","pAvg":0.00189,"pSD":0.00595,"pScaled":0.00077,"pRank":26,"nSamples":500,"individualID.1":95,"individualID.2":92,"transmission":false,"snpDist":17,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":535,"infectionDiff":71,"infectionDiffY":0.19452,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"095_093","label":"SNPs","pAvg":0.00258,"pSD":0.008,"pScaled":0.0007,"pRank":31,"nSamples":500,"individualID.1":95,"individualID.2":93,"transmission":false,"snpDist":18,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":372,"infectionDiff":296,"infectionDiffY":0.81096,"timeCat":"1","Z1":"0","Z2":"1","Z3":"2","Z4":"3","snpClose":false} {"pairID":"095_094","label":"SNPs","pAvg":0.78924,"pSD":0.40078,"pScaled":0.26019,"pRank":1,"nSamples":230,"individualID.1":95,"individualID.2":94,"transmission":false,"snpDist":2,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":418,"infectionDiff":568,"infectionDiffY":1.55616,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"1","snpClose":true} {"pairID":"095_096","label":"SNPs","pAvg":0.79871,"pSD":0.38284,"pScaled":0.27973,"pRank":1,"nSamples":230,"individualID.1":95,"individualID.2":96,"transmission":false,"snpDist":2,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":95,"infectionDiff":232,"infectionDiffY":0.63562,"timeCat":"1","Z1":"1","Z2":"1","Z3":"4","Z4":"1","snpClose":true} {"pairID":"095_097","label":"SNPs","pAvg":0.00122,"pSD":0.0038,"pScaled":0.00027,"pRank":73,"nSamples":500,"individualID.1":95,"individualID.2":97,"transmission":false,"snpDist":17,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":338,"infectionDiff":388,"infectionDiffY":1.06301,"timeCat":"2","Z1":"0","Z2":"1","Z3":"4","Z4":"3","snpClose":false} {"pairID":"095_098","label":"SNPs","pAvg":0.00086,"pSD":0.00274,"pScaled":0.00024,"pRank":63,"nSamples":500,"individualID.1":95,"individualID.2":98,"transmission":false,"snpDist":17,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":157,"infectionDiff":161,"infectionDiffY":0.4411,"timeCat":"1","Z1":"0","Z2":"0","Z3":"4","Z4":"3","snpClose":false} {"pairID":"095_099","label":"SNPs","pAvg":0.04328,"pSD":0.01139,"pScaled":0.01479,"pRank":8,"nSamples":50,"individualID.1":95,"individualID.2":99,"transmission":false,"snpDist":5,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1998-01-21 00:28:08","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1998-11-18 11:04:39","sampleDiff":139,"infectionDiff":25,"infectionDiffY":0.06849,"timeCat":"1","Z1":"1","Z2":"0","Z3":"4","Z4":"1"} {"pairID":"095_100","label":"SNPs","pAvg":0.01982,"pSD":0.00557,"pScaled":0.00584,"pRank":23,"nSamples":50,"individualID.1":95,"individualID.2":100,"transmission":false,"snpDist":5,"infectionDate.1":"1997-12-26 23:59:12","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1998-07-02 02:22:57","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":339,"infectionDiff":403,"infectionDiffY":1.10411,"timeCat":"2","Z1":"1","Z2":"0","Z3":"4","Z4":"2"} {"pairID":"096_060","label":"SNPs","pAvg":0.001,"pSD":0.0031,"pScaled":0.00049,"pRank":74,"nSamples":500,"individualID.1":96,"individualID.2":60,"transmission":false,"snpDist":12,"infectionDate.1":"1998-08-15 20:20:34","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1998-10-04 22:04:43","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":427,"infectionDiff":145,"infectionDiffY":0.39726,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"096_067","label":"SNPs","pAvg":0.03155,"pSD":0.00612,"pScaled":0.00796,"pRank":15,"nSamples":50,"individualID.1":96,"individualID.2":67,"transmission":false,"infectionDate.1":"1998-08-15 20:20:34","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1998-10-04 22:04:43","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":446,"infectionDiff":209,"infectionDiffY":0.5726,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"096_075","label":"SNPs","pAvg":0.001,"pSD":0.00308,"pScaled":0.00432,"pRank":39,"nSamples":500,"individualID.1":96,"individualID.2":75,"transmission":false,"snpDist":16,"infectionDate.1":"1998-08-15 20:20:34","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1998-10-04 22:04:43","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":180,"infectionDiff":188,"infectionDiffY":0.51507,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"096_081","label":"SNPs","pAvg":0.00978,"pSD":0.00276,"pScaled":0.00243,"pRank":23,"nSamples":50,"individualID.1":96,"individualID.2":81,"transmission":false,"infectionDate.1":"1998-08-15 20:20:34","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1998-10-04 22:04:43","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":392,"infectionDiff":272,"infectionDiffY":0.74521,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"096_082","label":"SNPs","pAvg":0.02145,"pSD":0.00441,"pScaled":0.00467,"pRank":19,"nSamples":50,"individualID.1":96,"individualID.2":82,"transmission":false,"snpDist":10,"infectionDate.1":"1998-08-15 20:20:34","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1998-10-04 22:04:43","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":396,"infectionDiff":349,"infectionDiffY":0.95616,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"096_088","label":"SNPs","pAvg":0.01021,"pSD":0.00244,"pScaled":0.00198,"pRank":29,"nSamples":50,"individualID.1":96,"individualID.2":88,"transmission":false,"snpDist":9,"infectionDate.1":"1998-08-15 20:20:34","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1998-10-04 22:04:43","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":9,"infectionDiff":34,"infectionDiffY":0.09315,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"096_090","label":"SNPs","pAvg":0.01879,"pSD":0.00427,"pScaled":0.00487,"pRank":16,"nSamples":50,"individualID.1":96,"individualID.2":90,"transmission":false,"infectionDate.1":"1998-08-15 20:20:34","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1998-10-04 22:04:43","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":372,"infectionDiff":97,"infectionDiffY":0.26575,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"096_093","label":"SNPs","pAvg":0.00203,"pSD":0.00635,"pScaled":0.00055,"pRank":40,"nSamples":500,"individualID.1":96,"individualID.2":93,"transmission":false,"snpDist":18,"infectionDate.1":"1998-08-15 20:20:34","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1998-10-04 22:04:43","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":277,"infectionDiff":65,"infectionDiffY":0.17808,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"096_094","label":"SNPs","pAvg":0.05054,"pSD":0.00954,"pScaled":0.01666,"pRank":6,"nSamples":50,"individualID.1":96,"individualID.2":94,"transmission":false,"infectionDate.1":"1998-08-15 20:20:34","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1998-10-04 22:04:43","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":323,"infectionDiff":336,"infectionDiffY":0.92055,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"096_097","label":"SNPs","pAvg":0.0186,"pSD":0.00422,"pScaled":0.00417,"pRank":20,"nSamples":50,"individualID.1":96,"individualID.2":97,"transmission":false,"infectionDate.1":"1998-08-15 20:20:34","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1998-10-04 22:04:43","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":243,"infectionDiff":156,"infectionDiffY":0.4274,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"096_100","label":"SNPs","pAvg":0.03218,"pSD":0.00666,"pScaled":0.00948,"pRank":9,"nSamples":50,"individualID.1":96,"individualID.2":100,"transmission":false,"infectionDate.1":"1998-08-15 20:20:34","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1998-10-04 22:04:43","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":244,"infectionDiff":171,"infectionDiffY":0.46849,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"097_067","label":"SNPs","pAvg":0.02741,"pSD":0.00559,"pScaled":0.00692,"pRank":19,"nSamples":50,"individualID.1":97,"individualID.2":67,"transmission":false,"infectionDate.1":"1999-01-19 04:22:48","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-06-04 20:37:48","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":203,"infectionDiff":53,"infectionDiffY":0.14521,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"097_075","label":"SNPs","pAvg":0.00111,"pSD":0.00341,"pScaled":0.00481,"pRank":34,"nSamples":500,"individualID.1":97,"individualID.2":75,"transmission":false,"snpDist":20,"infectionDate.1":"1999-01-19 04:22:48","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-06-04 20:37:48","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-63,"infectionDiff":31,"infectionDiffY":0.08493,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"097_081","label":"SNPs","pAvg":0.01118,"pSD":0.00293,"pScaled":0.00278,"pRank":20,"nSamples":50,"individualID.1":97,"individualID.2":81,"transmission":false,"infectionDate.1":"1999-01-19 04:22:48","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-06-04 20:37:48","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":149,"infectionDiff":115,"infectionDiffY":0.31507,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"097_082","label":"SNPs","pAvg":0.00837,"pSD":0.02553,"pScaled":0.00182,"pRank":42,"nSamples":500,"individualID.1":97,"individualID.2":82,"transmission":false,"snpDist":14,"infectionDate.1":"1999-01-19 04:22:48","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-06-04 20:37:48","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":153,"infectionDiff":192,"infectionDiffY":0.52603,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"1","snpClose":false} {"pairID":"097_094","label":"SNPs","pAvg":0.01052,"pSD":0.00242,"pScaled":0.00347,"pRank":25,"nSamples":50,"individualID.1":97,"individualID.2":94,"transmission":false,"infectionDate.1":"1999-01-19 04:22:48","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-06-04 20:37:48","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":80,"infectionDiff":180,"infectionDiffY":0.49315,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"097_100","label":"SNPs","pAvg":0.02753,"pSD":0.00522,"pScaled":0.00811,"pRank":15,"nSamples":50,"individualID.1":97,"individualID.2":100,"transmission":false,"infectionDate.1":"1999-01-19 04:22:48","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1999-06-04 20:37:48","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":1,"infectionDiff":15,"infectionDiffY":0.0411,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"098_023","label":"SNPs","pAvg":0.00694,"pSD":0.0214,"pScaled":0.00309,"pRank":54,"nSamples":500,"individualID.1":98,"individualID.2":23,"transmission":false,"snpDist":14,"infectionDate.1":"1998-06-06 00:54:59","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1998-12-05 14:50:42","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":361,"infectionDiff":47,"infectionDiffY":0.12877,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"2","snpClose":false} {"pairID":"098_060","label":"SNPs","pAvg":0.00598,"pSD":0.0184,"pScaled":0.0029,"pRank":52,"nSamples":500,"individualID.1":98,"individualID.2":60,"transmission":false,"snpDist":16,"infectionDate.1":"1998-06-06 00:54:59","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1998-12-05 14:50:42","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":365,"infectionDiff":216,"infectionDiffY":0.59178,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"098_067","label":"SNPs","pAvg":0.00191,"pSD":0.00587,"pScaled":0.00048,"pRank":70,"nSamples":500,"individualID.1":98,"individualID.2":67,"transmission":false,"snpDist":18,"infectionDate.1":"1998-06-06 00:54:59","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1998-12-05 14:50:42","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":384,"infectionDiff":280,"infectionDiffY":0.76712,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"098_075","label":"SNPs","pAvg":0.00216,"pSD":0.00665,"pScaled":0.00937,"pRank":26,"nSamples":500,"individualID.1":98,"individualID.2":75,"transmission":false,"snpDist":20,"infectionDate.1":"1998-06-06 00:54:59","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1998-12-05 14:50:42","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":119,"infectionDiff":258,"infectionDiffY":0.70685,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"098_081","label":"SNPs","pAvg":0.00224,"pSD":0.00703,"pScaled":0.00056,"pRank":73,"nSamples":500,"individualID.1":98,"individualID.2":81,"transmission":false,"snpDist":12,"infectionDate.1":"1998-06-06 00:54:59","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1998-12-05 14:50:42","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":330,"infectionDiff":342,"infectionDiffY":0.93699,"timeCat":"1","Z1":"1","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"098_082","label":"SNPs","pAvg":0.00217,"pSD":0.00668,"pScaled":0.00047,"pRank":88,"nSamples":500,"individualID.1":98,"individualID.2":82,"transmission":false,"snpDist":14,"infectionDate.1":"1998-06-06 00:54:59","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1998-12-05 14:50:42","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":334,"infectionDiff":420,"infectionDiffY":1.15068,"timeCat":"2","Z1":"0","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"098_088","label":"SNPs","pAvg":0.00316,"pSD":0.00971,"pScaled":0.00061,"pRank":79,"nSamples":500,"individualID.1":98,"individualID.2":88,"transmission":false,"snpDist":12,"infectionDate.1":"1998-06-06 00:54:59","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1998-12-05 14:50:42","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-52,"infectionDiff":105,"infectionDiffY":0.28767,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":false} {"pairID":"098_090","label":"SNPs","pAvg":0.63723,"pSD":0.46353,"pScaled":0.16521,"pRank":4,"nSamples":131,"individualID.1":98,"individualID.2":90,"transmission":false,"snpDist":1,"infectionDate.1":"1998-06-06 00:54:59","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1998-12-05 14:50:42","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":310,"infectionDiff":168,"infectionDiffY":0.46027,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1","snpClose":true} {"pairID":"098_093","label":"SNPs","pAvg":0.63871,"pSD":0.46165,"pScaled":0.17354,"pRank":5,"nSamples":131,"individualID.1":98,"individualID.2":93,"transmission":false,"snpDist":1,"infectionDate.1":"1998-06-06 00:54:59","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1998-12-05 14:50:42","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":215,"infectionDiff":135,"infectionDiffY":0.36986,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"1","snpClose":true} {"pairID":"098_094","label":"SNPs","pAvg":0.00161,"pSD":0.00498,"pScaled":0.00053,"pRank":65,"nSamples":500,"individualID.1":98,"individualID.2":94,"transmission":false,"snpDist":17,"infectionDate.1":"1998-06-06 00:54:59","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1998-12-05 14:50:42","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":261,"infectionDiff":407,"infectionDiffY":1.11507,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"098_096","label":"SNPs","pAvg":0.00105,"pSD":0.00323,"pScaled":0.00037,"pRank":67,"nSamples":500,"individualID.1":98,"individualID.2":96,"transmission":false,"snpDist":17,"infectionDate.1":"1998-06-06 00:54:59","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1998-12-05 14:50:42","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-62,"infectionDiff":71,"infectionDiffY":0.19452,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"098_097","label":"SNPs","pAvg":0.57116,"pSD":0.48353,"pScaled":0.12797,"pRank":5,"nSamples":113,"individualID.1":98,"individualID.2":97,"transmission":false,"snpDist":0,"infectionDate.1":"1998-06-06 00:54:59","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1998-12-05 14:50:42","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":181,"infectionDiff":227,"infectionDiffY":0.62192,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"098_100","label":"SNPs","pAvg":0.001,"pSD":0.00306,"pScaled":0.00029,"pRank":83,"nSamples":500,"individualID.1":98,"individualID.2":100,"transmission":false,"snpDist":15,"infectionDate.1":"1998-06-06 00:54:59","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1998-12-05 14:50:42","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":182,"infectionDiff":242,"infectionDiffY":0.66301,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"099_023","label":"SNPs","pAvg":0.00216,"pSD":0.00676,"pScaled":0.00096,"pRank":73,"nSamples":500,"individualID.1":99,"individualID.2":23,"transmission":false,"snpDist":11,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1998-07-22 16:40:51","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-12-01 16:41:38","sampleDiff":378,"infectionDiff":183,"infectionDiffY":0.50137,"timeCat":"1","Z1":"0","Z2":"1","Z3":"3","Z4":"3","snpClose":false} {"pairID":"099_027","label":"SNPs","pAvg":0.02193,"pSD":0.00503,"pScaled":0.00783,"pRank":18,"nSamples":50,"individualID.1":99,"individualID.2":27,"transmission":false,"snpDist":9,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1998-03-30 20:42:40","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-04-22 10:20:52","sampleDiff":155,"infectionDiff":69,"infectionDiffY":0.18904,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"099_054","label":"SNPs","pAvg":0.02727,"pSD":0.00564,"pScaled":0.0071,"pRank":11,"nSamples":50,"individualID.1":99,"individualID.2":54,"transmission":false,"snpDist":9,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1998-02-09 09:08:16","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-02-12 06:45:29","sampleDiff":86,"infectionDiff":19,"infectionDiffY":0.05205,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"099_057","label":"SNPs","pAvg":0.06026,"pSD":0.01119,"pScaled":0.01205,"pRank":11,"nSamples":50,"individualID.1":99,"individualID.2":57,"transmission":false,"snpDist":10,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1998-02-11 11:35:11","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-01-13 10:15:32","sampleDiff":56,"infectionDiff":21,"infectionDiffY":0.05753,"timeCat":"1","Z1":"1","Z2":"1","Z3":"1","Z4":"2"} {"pairID":"099_060","label":"SNPs","pAvg":0.01928,"pSD":0.00448,"pScaled":0.00934,"pRank":19,"nSamples":50,"individualID.1":99,"individualID.2":60,"transmission":false,"snpDist":9,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1999-01-08 01:05:48","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-12-05 17:50:03","sampleDiff":382,"infectionDiff":352,"infectionDiffY":0.96438,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"099_067","label":"SNPs","pAvg":0.00458,"pSD":0.01424,"pScaled":0.00116,"pRank":63,"nSamples":500,"individualID.1":99,"individualID.2":67,"transmission":false,"snpDist":11,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":402,"infectionDiff":416,"infectionDiffY":1.13973,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"2","snpClose":false} {"pairID":"099_068","label":"SNPs","pAvg":0.01204,"pSD":0.00363,"pScaled":0.00263,"pRank":29,"nSamples":50,"individualID.1":99,"individualID.2":68,"transmission":false,"snpDist":6,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1998-03-29 17:26:23","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1998-11-26 07:03:10","sampleDiff":8,"infectionDiff":68,"infectionDiffY":0.1863,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"099_069","label":"SNPs","pAvg":0.04448,"pSD":0.00957,"pScaled":0.01426,"pRank":9,"nSamples":50,"individualID.1":99,"individualID.2":69,"transmission":false,"snpDist":7,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1998-04-25 15:40:02","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-01-09 20:59:51","sampleDiff":52,"infectionDiff":95,"infectionDiffY":0.26027,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"099_075","label":"SNPs","pAvg":0.00147,"pSD":0.00459,"pScaled":0.00637,"pRank":30,"nSamples":500,"individualID.1":99,"individualID.2":75,"transmission":false,"snpDist":13,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":136,"infectionDiff":394,"infectionDiffY":1.07945,"timeCat":"2","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"099_076","label":"SNPs","pAvg":0.02647,"pSD":0.005,"pScaled":0.00649,"pRank":15,"nSamples":50,"individualID.1":99,"individualID.2":76,"transmission":false,"snpDist":6,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1998-03-29 18:22:50","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-11-24 02:09:24","sampleDiff":371,"infectionDiff":68,"infectionDiffY":0.1863,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"099_078","label":"SNPs","pAvg":0.01946,"pSD":0.00439,"pScaled":0.00431,"pRank":23,"nSamples":50,"individualID.1":99,"individualID.2":78,"transmission":false,"snpDist":5,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1998-04-26 19:29:31","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-06-20 19:47:24","sampleDiff":214,"infectionDiff":96,"infectionDiffY":0.26301,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3"} {"pairID":"099_081","label":"SNPs","pAvg":0.0152,"pSD":0.00439,"pScaled":0.00378,"pRank":13,"nSamples":50,"individualID.1":99,"individualID.2":81,"transmission":false,"snpDist":5,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":348,"infectionDiff":478,"infectionDiffY":1.30959,"timeCat":"2","Z1":"0","Z2":"1","Z3":"3","Z4":"3"} {"pairID":"099_082","label":"SNPs","pAvg":0.0089,"pSD":0.00238,"pScaled":0.00194,"pRank":36,"nSamples":50,"individualID.1":99,"individualID.2":82,"transmission":false,"snpDist":7,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":352,"infectionDiff":556,"infectionDiffY":1.52329,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"099_083","label":"SNPs","pAvg":0.01191,"pSD":0.00327,"pScaled":0.00463,"pRank":25,"nSamples":50,"individualID.1":99,"individualID.2":83,"transmission":false,"snpDist":7,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1998-02-15 10:36:35","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-03-25 21:28:52","sampleDiff":127,"infectionDiff":25,"infectionDiffY":0.06849,"timeCat":"1","Z1":"1","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"099_084","label":"SNPs","pAvg":0.00116,"pSD":0.00356,"pScaled":0.00059,"pRank":38,"nSamples":500,"individualID.1":99,"individualID.2":84,"transmission":false,"snpDist":16,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1998-04-04 11:08:25","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-11-24 00:46:30","sampleDiff":371,"infectionDiff":73,"infectionDiffY":0.2,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"099_088","label":"SNPs","pAvg":0.01021,"pSD":0.00244,"pScaled":0.00198,"pRank":29,"nSamples":50,"individualID.1":99,"individualID.2":88,"transmission":false,"snpDist":6,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1998-09-18 20:11:45","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1998-10-14 07:18:33","sampleDiff":-35,"infectionDiff":241,"infectionDiffY":0.66027,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3"} {"pairID":"099_089","label":"SNPs","pAvg":0.00101,"pSD":0.00311,"pScaled":0.00032,"pRank":47,"nSamples":500,"individualID.1":99,"individualID.2":89,"transmission":false,"snpDist":15,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1998-04-08 04:18:17","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-08-01 23:56:04","sampleDiff":257,"infectionDiff":77,"infectionDiffY":0.21096,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"099_090","label":"SNPs","pAvg":0.001,"pSD":0.00308,"pScaled":0.00026,"pRank":66,"nSamples":500,"individualID.1":99,"individualID.2":90,"transmission":false,"snpDist":16,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1998-11-20 14:40:54","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-10-11 14:45:53","sampleDiff":327,"infectionDiff":304,"infectionDiffY":0.83288,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"099_092","label":"SNPs","pAvg":0.00113,"pSD":0.00352,"pScaled":0.00046,"pRank":40,"nSamples":500,"individualID.1":99,"individualID.2":92,"transmission":false,"snpDist":15,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1998-03-07 19:10:07","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-12-18 17:45:19","sampleDiff":395,"infectionDiff":46,"infectionDiffY":0.12603,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"099_093","label":"SNPs","pAvg":0.00109,"pSD":0.00338,"pScaled":0.0003,"pRank":50,"nSamples":500,"individualID.1":99,"individualID.2":93,"transmission":false,"snpDist":16,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1998-10-19 11:22:04","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-07-08 20:29:43","sampleDiff":232,"infectionDiff":271,"infectionDiffY":0.74247,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"3","snpClose":false} {"pairID":"099_094","label":"SNPs","pAvg":0.07621,"pSD":0.01866,"pScaled":0.02512,"pRank":4,"nSamples":50,"individualID.1":99,"individualID.2":94,"transmission":false,"snpDist":5,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":278,"infectionDiff":543,"infectionDiffY":1.48767,"timeCat":"2","Z1":"1","Z2":"1","Z3":"1","Z4":"1"} {"pairID":"099_096","label":"SNPs","pAvg":0.05021,"pSD":0.0102,"pScaled":0.01759,"pRank":6,"nSamples":50,"individualID.1":99,"individualID.2":96,"transmission":false,"snpDist":5,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1998-08-15 20:20:34","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1998-10-04 22:04:43","sampleDiff":-45,"infectionDiff":207,"infectionDiffY":0.56712,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"099_097","label":"SNPs","pAvg":0.00099,"pSD":0.00305,"pScaled":0.00022,"pRank":77,"nSamples":500,"individualID.1":99,"individualID.2":97,"transmission":false,"snpDist":15,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1999-01-19 04:22:48","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-06-04 20:37:48","sampleDiff":198,"infectionDiff":363,"infectionDiffY":0.99452,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"099_098","label":"SNPs","pAvg":0.00196,"pSD":0.00603,"pScaled":0.00056,"pRank":36,"nSamples":500,"individualID.1":99,"individualID.2":98,"transmission":false,"snpDist":15,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1998-06-06 00:54:59","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1998-12-05 14:50:42","sampleDiff":17,"infectionDiff":136,"infectionDiffY":0.3726,"timeCat":"1","Z1":"0","Z2":"1","Z3":"1","Z4":"3","snpClose":false} {"pairID":"099_100","label":"SNPs","pAvg":0.69112,"pSD":0.45542,"pScaled":0.20366,"pRank":3,"nSamples":158,"individualID.1":99,"individualID.2":100,"transmission":false,"snpDist":0,"infectionDate.1":"1998-01-21 00:28:08","infectionDate.2":"1999-02-02 21:14:50","sampleDate.1":"1998-11-18 11:04:39","sampleDate.2":"1999-06-05 16:34:03","sampleDiff":199,"infectionDiff":378,"infectionDiffY":1.03562,"timeCat":"2","Z1":"1","Z2":"0","Z3":"1","Z4":"2","snpClose":true} {"pairID":"100_067","label":"SNPs","pAvg":0.05154,"pSD":0.00952,"pScaled":0.01301,"pRank":10,"nSamples":50,"individualID.1":100,"individualID.2":67,"transmission":false,"infectionDate.1":"1999-02-02 21:14:50","infectionDate.2":"1999-03-13 00:28:54","sampleDate.1":"1999-06-05 16:34:03","sampleDate.2":"1999-12-24 23:34:19","sampleDiff":202,"infectionDiff":38,"infectionDiffY":0.10411,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"1"} {"pairID":"100_075","label":"SNPs","pAvg":0.00099,"pSD":0.00307,"pScaled":0.00431,"pRank":40,"nSamples":500,"individualID.1":100,"individualID.2":75,"transmission":false,"snpDist":13,"infectionDate.1":"1999-02-02 21:14:50","infectionDate.2":"1999-02-19 09:11:04","sampleDate.1":"1999-06-05 16:34:03","sampleDate.2":"1999-04-03 08:10:08","sampleDiff":-63,"infectionDiff":16,"infectionDiffY":0.04384,"timeCat":"1","Z1":"0","Z2":"0","Z3":"1","Z4":"3","snpClose":false} {"pairID":"100_081","label":"SNPs","pAvg":0.00978,"pSD":0.00276,"pScaled":0.00243,"pRank":23,"nSamples":50,"individualID.1":100,"individualID.2":81,"transmission":false,"infectionDate.1":"1999-02-02 21:14:50","infectionDate.2":"1999-05-14 10:24:27","sampleDate.1":"1999-06-05 16:34:03","sampleDate.2":"1999-11-01 00:16:25","sampleDiff":148,"infectionDiff":101,"infectionDiffY":0.27671,"timeCat":"1","Z1":"0","Z2":"0","Z3":"3","Z4":"3"} {"pairID":"100_082","label":"SNPs","pAvg":0.03159,"pSD":0.00605,"pScaled":0.00688,"pRank":13,"nSamples":50,"individualID.1":100,"individualID.2":82,"transmission":false,"snpDist":7,"infectionDate.1":"1999-02-02 21:14:50","infectionDate.2":"1999-07-30 16:21:14","sampleDate.1":"1999-06-05 16:34:03","sampleDate.2":"1999-11-05 01:51:36","sampleDiff":152,"infectionDiff":178,"infectionDiffY":0.48767,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"} {"pairID":"100_094","label":"SNPs","pAvg":0.03116,"pSD":0.00686,"pScaled":0.01027,"pRank":11,"nSamples":50,"individualID.1":100,"individualID.2":94,"transmission":false,"infectionDate.1":"1999-02-02 21:14:50","infectionDate.2":"1999-07-18 02:56:50","sampleDate.1":"1999-06-05 16:34:03","sampleDate.2":"1999-08-23 18:03:47","sampleDiff":79,"infectionDiff":165,"infectionDiffY":0.45205,"timeCat":"1","Z1":"1","Z2":"0","Z3":"1","Z4":"2"}