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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "nosoi" in publications use:'
type: software
license: GPL-3.0-only
title: 'nosoi: A Forward Agent-Based Transmission Chain Simulator'
version: 1.1.2
doi: 10.1111/2041-210X.13422
identifiers:
- type: doi
  value: 10.32614/CRAN.package.nosoi
abstract: The aim of 'nosoi' (pronounced no.si) is to provide a flexible agent-based
  stochastic transmission chain/epidemic simulator (Lequime et al. Methods in Ecology
  and Evolution 11:1002-1007). It is named after the daimones of plague, sickness
  and disease that escaped Pandora's jar in the Greek mythology. 'nosoi' is able to
  take into account the influence of multiple variable on the transmission process
  (e.g. dual-host systems (such as arboviruses), within-host viral dynamics, transportation,
  population structure), alone or taken together, to create complex but relatively
  intuitive epidemiological simulations.
authors:
- family-names: Lequime
  given-names: Sebastian
  email: sebastian.lequime@gmail.com
  orcid: https://orcid.org/0000-0002-3140-0651
- family-names: Bastide
  given-names: Paul
  email: paul.bastide@umontpellier.fr
  orcid: https://orcid.org/0000-0002-8084-9893
- family-names: Dellicour
  given-names: Simon
  email: simon.dellicour@kuleuven.be
  orcid: https://orcid.org/0000-0001-9558-1052
- family-names: Lemey
  given-names: Philippe
  email: philippe.lemey@kuleuven.be
  orcid: https://orcid.org/0000-0003-2826-5353
- family-names: Baele
  given-names: Guy
  email: guy.baele@kuleuven.be
  orcid: https://orcid.org/0000-0002-1915-7732
preferred-citation:
  type: article
  title: 'nosoi: A stochastic agent-based transmission chain simulation framework
    in R'
  authors:
  - family-names: Lequime
    given-names: Sebastian
    email: sebastian.lequime@gmail.com
    orcid: https://orcid.org/0000-0002-3140-0651
  - family-names: Bastide
    given-names: Paul
    email: paul.bastide@umontpellier.fr
    orcid: https://orcid.org/0000-0002-8084-9893
  - family-names: Dellicour
    given-names: Simon
    email: simon.dellicour@kuleuven.be
    orcid: https://orcid.org/0000-0001-9558-1052
  - family-names: Lemey
    given-names: Philippe
    email: philippe.lemey@kuleuven.be
    orcid: https://orcid.org/0000-0003-2826-5353
  - family-names: Baele
    given-names: Guy
    email: guy.baele@kuleuven.be
    orcid: https://orcid.org/0000-0002-1915-7732
  journal: Methods in Ecology and Evolution
  year: '2020'
  volume: '11'
  issue: '8'
  doi: 10.1111/2041-210X.13422
  start: 1002-1007
repository: https://epiverse-connect.r-universe.dev
repository-code: https://github.com/slequime/nosoi
commit: e2b8bc7964f0ca211f0e14dbc08c11dcdaeba742
url: https://slequime.github.io/nosoi/
contact:
- family-names: Lequime
  given-names: Sebastian
  email: sebastian.lequime@gmail.com
  orcid: https://orcid.org/0000-0002-3140-0651