Setup and Requirements | Format weather station data | Calculate epidemic onset | Estimate canopy closure | Calculate growth rate | Calculate canopy closure dates | Plot date values
This package is considered a duplicate. The official version of this package is found at:https://paulmelloy.r-universe.dev/cercospoRa
Package: cercospoRa 0.0.2
Paul Melloy
cercospoRa: Process Based Epidemiological Model for Cercospora Leaf Spot of Sugar Beet
Estimates sugar beet canopy closure with remotely sensed leaf area index and estimates when action might be needed to protect the crop from a Leaf Spot epidemic with a negative prognosis model based on published models.
Authors:
cercospoRa_0.0.2.tar.gz
cercospoRa_0.0.2.zip(r-4.7-any)cercospoRa_0.0.2.zip(r-4.6-any)cercospoRa_0.0.2.zip(r-4.5-any)
cercospoRa_0.0.2.tgz(r-4.6-any)cercospoRa_0.0.2.tgz(r-4.5-any)
cercospoRa_0.0.2.tar.gz(r-4.7-any)cercospoRa_0.0.2.tar.gz(r-4.6-any)
cercospoRa_0.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
cercospoRa/json (API)
| # Install 'cercospoRa' in R: |
| install.packages('cercospoRa', repos = c('https://epiverse-connect.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/paulmelloy/cercospora/issues
Pkgdown/docs site:https://paulmelloy.com.au
Datasets:
- weathr - Weather station data
Last updated from:8570ce711a. Checks:9 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 173 | ||
| source / vignettes | OK | 267 | ||
| linux-release | OK | 167 | ||
| macos-release | OK | 153 | ||
| macos-oldrel | OK | 103 | ||
| windows-devel | OK | 107 | ||
| windows-release | OK | 109 | ||
| windows-oldrel | OK | 99 | ||
| wasm-release | OK | 139 |
Exports:calc_c_closurecalc_DIVcalc_epidemic_onsetcalc_epidemic_onset_from_imagecalc_r_x0format_weatherread_sb_growth_parameter
Dependencies:bootcircularclassclassIntcpp11data.tableDBIe1071genericsKernSmoothlubridateminpack.lmmvtnormproxyRcpps2sfterratimechangeunitswk
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate canopy closure date | calc_c_closure |
| Calculate daily infection values | calc_DIV |
| Calculate epidemic onset | calc_epidemic_onset |
| Calculate epidemic onset from image | calc_epidemic_onset_from_image |
| Calculate growth rate and LAI at t0 | calc_r_x0 |
| Calculate cDIV threshold for sugar beet cultivars | calc_susceptibility |
| Format weather data into a standardised format. | format_weather |
| Calculate Cercospora Latent Period | latent_period |
| Read LAI images at several time points | read_sb_growth_parameter |
| Get temperature index | temperature_index |
| Weather station data | weathr |