R packages by epiverse-connect

Using Survey Weights with nhanesAUpdated 18 hours ago

Robert Gentleman and Teresa Filshtein Sonmez

Rendered from UsingSurveyWeights.rmd in nhanesA 1.1.7.

Lexis functions for representation and analysis of follow-up dataUpdated 1 days ago

Bendix Carstensen

Rendered from aaflup.rnw in Epi 2.58.

Time dependent covariates in Lexis objects: addCov & addDrugUpdated 1 days ago

Bendix Carstensen

Rendered from addLexis.rnw in Epi 2.58.

Likelihood Free Markhov Chain Monte Carlo (LFMCMC)Updated 6 days ago

Andrew Pulsipher

Rendered from likelihood-free-mcmc.Rmd in epiworldR 0.5-0.

Competing risks with Lexis, parametric rates and simulation based confidence intervalsUpdated 10 days ago

Bendix Carstensen

Rendered from crisk.rnw in Epi 2.58.

Simulation of multistate models with multiple timescales: simLexisUpdated 10 days ago

Bendix Carstensen

Rendered from simLexis.rnw in Epi 2.58.

Years of life lost (YLL)Updated 10 days ago

Bendix Carstensen

Rendered from yll.rnw in Epi 2.58.

Gaussian Process implementation detailsUpdated 12 days ago

Sebastian Funk

Rendered from gaussian_process_implementation_details.Rmd in EpiNow2 1.6.1.9000.

Model definition: estimate_infections()Updated 12 days ago

Sebastian Funk

Rendered from estimate_infections.Rmd in EpiNow2 1.6.1.9000.

Model definition: estimate_truncation()Updated 12 days ago

Sebastian Funk

Rendered from estimate_truncation.Rmd in EpiNow2 1.6.1.9000.

Introducing nhanesAUpdated 17 days ago

Christopher J. Endres

Rendered from Introducing_nhanesA.Rmd in nhanesA 1.1.7.

Download CentreUpdated 21 days ago

Emanuele Guidotti

Rendered from data.Rmd in COVID19 3.0.0.

Getting started with outbreak detectionUpdated 22 days ago

Sebastian Meyer

Rendered from surveillance.Rnw in surveillance 1.24.1.

Monitoring count time series in R: Aberration detection in public health surveillanceUpdated 22 days ago

Sebastian Meyer

Rendered from monitoringCounts.Rnw in surveillance 1.24.1.

Getting started with EpiNow2Updated 26 days ago

Sebastian Funk

Rendered from EpiNow2.Rmd in EpiNow2 1.6.1.9000.

Using epinow() for running in production modeUpdated 26 days ago

Sebastian Funk

Rendered from epinow.Rmd in EpiNow2 1.6.1.9000.

Introduction to cleanepiUpdated 1 months ago

Karim Mané

Rendered from cleanepi.Rmd in cleanepi 1.0.2.9000.

Package Design vignette for {cleanepi}Updated 1 months ago

Karim Mané

Rendered from design_principle.Rmd in cleanepi 1.0.2.9000.

Introduction to socialmixrUpdated 1 months ago

Sebastian Funk

Rendered from socialmixr.Rmd in socialmixr 0.4.0.9000.

AMR for PythonUpdated 1 months ago

Matthijs S. Berends

Rendered from AMR_for_Python.Rmd in AMR 2.1.1.9110.

EpiModel: Mathematical Modeling of Infectious Disease DynamicsUpdated 2 months ago

Samuel M. Jenness, Steven M. Goodreau, Martina Morris, and Adrien Le Guillou

Rendered from Intro.Rmd in EpiModel 2.5.0.

Working with Custom Attributes and Summary Statistics in EpiModelUpdated 2 months ago

EpiModel vr packageVersion('EpiModel')

Rendered from attributes-and-summary-statistics.Rmd in EpiModel 2.5.0.

Working with Network Objects in EpiModelUpdated 2 months ago

EpiModel vr packageVersion('EpiModel')

Rendered from network-objects.Rmd in EpiModel 2.5.0.

Getting started with epiworldRUpdated 2 months ago

Derek Meyer, George Vega Yon

Rendered from getting-started.Rmd in epiworldR 0.5-0.

Implementation details of epiworldRUpdated 2 months ago

George Vega Yon, Derek Meyer

Rendered from implementation.Rmd in epiworldR 0.5-0.

Mixing modelsUpdated 2 months ago

George Vega Yon

Rendered from mixing.Rmd in epiworldR 0.5-0.

Run MultipleUpdated 2 months ago

Derek Meyer, George Vega Yon

Rendered from run-multiple.Rmd in epiworldR 0.5-0.

An introduction to incidence2Updated 2 months ago

Tim Taylor

Rendered from incidence2.Rmd in incidence2 2.6.0.

Workflow for Rt estimation and forecastingUpdated 2 months ago

Sebastian Funk

Rendered from estimate_infections_workflow.Rmd in EpiNow2 1.6.1.9000.

Examples: estimate_infections()Updated 2 months ago

Sebastian Funk

Rendered from estimate_infections_options.Rmd in EpiNow2 1.6.1.9000.

hhh4 (spatio-temporal): Endemic-epidemic modeling of areal count time seriesUpdated 2 months ago

Sebastian Meyer

Rendered from hhh4_spacetime.Rnw in surveillance 1.24.1.

hhh4: An endemic-epidemic modelling framework for infectious disease countsUpdated 2 months ago

Sebastian Meyer

Rendered from hhh4.Rnw in surveillance 1.24.1.

twinstim: An endemic-epidemic modeling framework for spatio-temporal point patternsUpdated 2 months ago

Sebastian Meyer

Rendered from twinstim.Rnw in surveillance 1.24.1.

Welcome to the AMR packageUpdated 2 months ago

Matthijs S. Berends

Rendered from welcome_to_AMR.Rmd in AMR 2.1.1.9110.

Kernel Density PlotUpdated 2 months ago

lindbrook

Rendered from kernel.density.Rmd in cholera 0.8.0.9486.

Descriptive epidemiology using Updated 2 months ago

Mark Stevenson

Rendered from epiR_descriptive.Rmd in epiR 2.0.76.

Surveillance system assessment using Updated 2 months ago

Mark Stevenson and Evan Sergeant

Rendered from epiR_surveillance.Rmd in epiR 2.0.76.

Measures of association using Updated 2 months ago

Mark Stevenson

Rendered from epiR_measures_of_association.Rmd in epiR 2.0.76.

Sample size calculations using Updated 2 months ago

Mark Stevenson

Rendered from epiR_sample_size.Rmd in epiR 2.0.76.

Dealing with missed generations of infections with EpiEstimUpdated 3 months ago

Andrea Brizzi

Rendered from EpiEstim_backimputation.Rmd in EpiEstim 2.4.

EpiEstim: a demonstrationUpdated 3 months ago

Anne Cori

Rendered from short_demo.Rmd in EpiEstim 2.4.

EpiEstim VignetteUpdated 3 months ago

Rebecca Nash

Rendered from full_EpiEstim_vignette.Rmd in EpiEstim 2.4.

MV-EpiEstimUpdated 3 months ago

Anne Cori

Rendered from MV_EpiEstim_vignette.Rmd in EpiEstim 2.4.

Get started with epidatrUpdated 3 months ago

David Weber

Rendered from epidatr.Rmd in epidatr 1.2.0.

A primer on working with delay distributionsUpdated 4 months ago

Adam Kucharski

Rendered from delay_distributions.Rmd in cfr 0.1.2.

Calculating a static, delay-adjusted estimate of disease severityUpdated 4 months ago

Adam Kucharski

Rendered from estimate_static_severity.Rmd in cfr 0.1.2.

Estimating disease severity while correcting for reporting delaysUpdated 4 months ago

Adam Kucharski

Rendered from cfr.Rmd in cfr 0.1.2.

Estimating how disease severity varies over the course of an outbreakUpdated 4 months ago

Adam Kucharski

Rendered from estimate_time_varying_severity.Rmd in cfr 0.1.2.

Estimating the proportion of cases that are ascertained during an outbreakUpdated 4 months ago

Adam Kucharski

Rendered from estimate_ascertainment.Rmd in cfr 0.1.2.

Handling data from {incidence2}Updated 4 months ago

Adam Kucharski

Rendered from data_from_incidence2.Rmd in cfr 0.1.2.

Compatibility with dplyrUpdated 5 months ago

Hugo Gruson

Rendered from compat-dplyr.Rmd in linelist 1.1.4.9000.

Using mstate for the analyses of Putter et al. (Stat Med 2007)Updated 5 months ago

Hein Putter

Rendered from Tutorial.Rnw in mstate 0.3.3.

An introduction to linelistUpdated 5 months ago

Hugo Gruson

Rendered from linelist.Rmd in linelist 1.1.4.9000.

Design Principles for linelistUpdated 5 months ago

Hugo Gruson

Rendered from design-principles.Rmd in linelist 1.1.4.9000.

Calculating the final size of an epidemicUpdated 6 months ago

Rosalind Eggo

Rendered from finalsize.Rmd in finalsize 0.2.1.9000.

Modelling uncertainty in R₀Updated 6 months ago

Rosalind Eggo

Rendered from uncertainty_params.Rmd in finalsize 0.2.1.9000.

Projecting re-emergence risk after waning or new birthsUpdated 6 months ago

Rosalind Eggo

Rendered from demographic_turnover.Rmd in finalsize 0.2.1.9000.

Customize plots of incidenceUpdated 7 months ago

Thibaut Jombart, Zhian N. Kamvar

Rendered from customize_plot.Rmd in incidence 1.7.5.

Overview of the incidence packageUpdated 7 months ago

Thibaut Jombart, Zhian N. Kamvar

Rendered from overview.Rmd in incidence 1.7.5.

Scheduled eventsUpdated 8 months ago

Stefan Widgren

Rendered from scheduled-events.Rmd in SimInf 9.8.1.9000.

Modelling heterogeneous susceptibilityUpdated 8 months ago

Rosalind Eggo

Rendered from varying_susceptibility.Rmd in finalsize 0.2.1.9000.

Theoretical backgroundUpdated 8 months ago

Adam Kucharski

Rendered from theoretical_background.Rmd in finalsize 0.2.1.9000.

"Unstacking" BarsUpdated 8 months ago

lindbrook

Rendered from unstacking.bars.Rmd in cholera 0.8.0.9486.

Duplicate and Missing CasesUpdated 8 months ago

lindbrook

Rendered from duplicate.missing.cases.Rmd in cholera 0.8.0.9486.

RoadsUpdated 8 months ago

lindbrook

Rendered from roads.Rmd in cholera 0.8.0.9486.

Software permissions and regulationsUpdated 8 months ago

Hugo Gruson

Rendered from software-permissions.Rmd in linelist 1.1.4.9000.

Finding data sources and signals of interestUpdated 9 months ago

David Weber

Rendered from signal-discovery.Rmd in epidatr 1.2.0.

Understanding and accessing versioned dataUpdated 9 months ago

David Weber

Rendered from versioned-data.Rmd in epidatr 1.2.0.

Software permissions and regulationsUpdated 9 months ago

Adam Kucharski

Rendered from software-permissions.Rmd in cfr 0.1.2.

DrugBank Database XML ParserUpdated 9 months ago

Mohammed Ali

Rendered from dbparser.Rmd in dbparser 2.0.3.

Getting startedUpdated 10 months ago

Sebastian Lequime

Rendered from nosoi.Rmd in nosoi 1.1.2.

Output and summarizationUpdated 10 months ago

Sebastian Lequime

Rendered from output.Rmd in nosoi 1.1.2.

Spread of a pathogen in a continuous spaceUpdated 10 months ago

Sebastian Lequime

Rendered from continuous.Rmd in nosoi 1.1.2.

Spread of a pathogen in a discrete structured populationUpdated 10 months ago

Sebastian Lequime

Rendered from discrete.Rmd in nosoi 1.1.2.

Post-process data in a trajectoryUpdated 10 months ago

Stefan Widgren

Rendered from post-process-data.Rmd in SimInf 9.8.1.9000.

Guide to constructing susceptibility matricesUpdated 1 years ago

Rosalind Eggo

Rendered from susceptibility_matrices.Rmd in finalsize 0.2.1.9000.

Modelling heterogeneous social contactsUpdated 1 years ago

Rosalind Eggo

Rendered from varying_contacts.Rmd in finalsize 0.2.1.9000.

Introduction to record linkage with diyarUpdated 1 years ago

Olisaeloka Nsonwu

Rendered from links.Rmd in diyar 0.5.1.9001.

Divvy up events with partitionsUpdated 1 years ago

Olisaeloka Nsonwu

Rendered from panes.Rmd in diyar 0.5.1.9001.

Introduction to epidemiological case definitions with diyarUpdated 1 years ago

Olisaeloka Nsonwu

Rendered from episodes.Rmd in diyar 0.5.1.9001.

EpiStatsUpdated 1 years ago

Jean Pierre Decorps

Rendered from EpiStats.Rmd in EpiStats 1.6-2.

Case studies and use in the literatureUpdated 1 years ago

Sebastian Funk

Rendered from case-studies.Rmd in EpiNow2 1.6.1.9000.

Using epiCleanrUpdated 1 years ago

Mohamed A. Yusuf

Rendered from using_epicleanr.Rmd in epiCleanr 0.2.0.

apisensrUpdated 1 years ago

Denis Haine

Rendered from apisensr.Rmd in apisensr 1.0.0.

Quantitative Bias Analysis for Epidemiologic DataUpdated 1 years ago

Denis Haine

Rendered from episensr.Rmd in episensr 1.3.0.

DSAIDE Package TutorialUpdated 1 years ago

Andreas Handel

Rendered from DSAIDE.Rmd in DSAIDE 0.9.6.

Guide to odin docsUpdated 1 years ago

Rich FitzJohn

Rendered from guide.Rmd in odin 1.5.11.

EpiEstim for aggregated incidence dataUpdated 1 years ago

Rebecca Nash

Rendered from EpiEstim_aggregated_data.Rmd in EpiEstim 2.4.

algo.glrnb: Count data regression charts using the generalized likelihood ratio statisticUpdated 2 years ago

Sebastian Meyer

Rendered from glrnb.Rnw in surveillance 1.24.1.

twinSIR: Individual-level epidemic modeling for a fixed population with known distancesUpdated 2 years ago

Sebastian Meyer

Rendered from twinSIR.Rnw in surveillance 1.24.1.

Multiple Bias ModelingUpdated 2 years ago

Denis Haine

Rendered from c_multiple_bias.Rmd in episensr 1.3.0.

Additional Sensitivity AnalysesUpdated 2 years ago

Denis Haine

Rendered from d_other_sens.Rmd in episensr 1.3.0.

odinUpdated 2 years ago

Rich FitzJohn

Rendered from odin.Rmd in odin 1.5.11.

Using outbreak data to estimate the relative case fatality ratioUpdated 2 years ago

Nicholas G Reich

Rendered from CFR_vignette.Rmd in coarseDataTools 0.7.1.

ddeUpdated 2 years ago

Rich FitzJohn

Rendered from dde.Rmd in dde 1.0.7.

Alternative software for estimating the reproduction numberUpdated 2 years ago

Anne Cori

Rendered from alternative_software.Rmd in EpiEstim 2.4.

Comparison with a compartmental modelUpdated 2 years ago

Rosalind Eggo

Rendered from compare_sir_model.Rmd in finalsize 0.2.1.9000.

List of included regionsUpdated 2 years ago

Hugo Gruson

Rendered from countries.Rmd in contactdata 1.1.0.9000.

Visualise age pyramidsUpdated 2 years ago

Hugo Gruson

Rendered from visualise_age.Rmd in contactdata 1.1.0.9000.

Visualise contact matricesUpdated 2 years ago

Hugo Gruson

Rendered from visualise_contact.Rmd in contactdata 1.1.0.9000.

debuggingUpdated 2 years ago

Rich FitzJohn

Rendered from debugging.Rmd in odin 1.5.11.

PythonUpdated 2 years ago

Emanuele Guidotti

Rendered from python.Rmd in COVID19 3.0.0.

RUpdated 2 years ago

Emanuele Guidotti

Rendered from r.Rmd in COVID19 3.0.0.

Model definition: estimate_secondary()Updated 2 years ago

Sebastian Funk

Rendered from estimate_secondary.Rmd in EpiNow2 1.6.1.9000.

Overview of the epitrix packageUpdated 2 years ago

Thibaut Jombart

Rendered from epitrix.Rmd in epitrix 0.4.0.

Covid19R Project Data FormatUpdated 2 years ago

Rami Krispin

Rendered from covid19R.Rmd in coronavirus 0.4.1.

number_line and overlapsUpdated 2 years ago

Olisaeloka Nsonwu

Rendered from number_line.Rmd in diyar 0.5.1.9001.

Example to estimate incubation periodUpdated 2 years ago

Flavio Finger

Rendered from estimate_incubation.Rmd in epitrix 0.4.0.

odin discrete modelsUpdated 2 years ago

Thibaut Jombart, Rich FitzJohn

Rendered from discrete.Rmd in odin 1.5.11.

odin functionsUpdated 2 years ago

Rich FitzJohn

Rendered from functions.Rmd in odin 1.5.11.

SMR VignetteUpdated 2 years ago

Matti Rantanen

Rendered from sir.Rmd in popEpi 0.4.12.

SimInf: An R Package for Data-Driven Stochastic Disease Spread SimulationsUpdated 2 years ago

Stefan Widgren

Rendered from SimInf.Rnw in SimInf 9.8.1.9000.

Working with Model Parameters in EpiModelUpdated 2 years ago

EpiModel vr packageVersion('EpiModel')

Rendered from model-parameters.Rmd in EpiModel 2.5.0.

Using custom priors, likelihood, or movements in outbreaker2Updated 2 years ago

Thibaut Jombart

Rendered from customisation.Rmd in outbreaker2 1.1.3.

riskCommunicator Manuscript VignetteUpdated 3 years ago

Jessica Grembi, Elizabeth Rogawski McQuade

Rendered from Vignette_manuscript.Rmd in riskCommunicator 1.0.1.

riskCommunicator package extended vignetteUpdated 3 years ago

Jessica Grembi, Elizabeth Rogawski McQuade

Rendered from Vignette_newbieRusers.Rmd in riskCommunicator 1.0.1.

Inference of transmission tree from a dated phylogenyUpdated 3 years ago

Xavier Didelot

Rendered from infer.Rmd in TransPhylo 1.4.10.

Introduction to the covid19sf DatasetsUpdated 3 years ago

Rami Krispin

Rendered from intro.Rmd in covid19sf 0.1.2.

ContributorsUpdated 3 years ago

Emanuele Guidotti

Rendered from contributors.Rmd in COVID19 3.0.0.

DocumentationUpdated 3 years ago

Emanuele Guidotti

Rendered from docs.Rmd in COVID19 3.0.0.

IntroductionUpdated 3 years ago

Thibaut Jombart

Rendered from Introduction.Rmd in trending 0.1.0.

Prediction intervals for GLMsUpdated 3 years ago

Thibaut Jombart

Rendered from prediction_intervals.Rmd in trending 0.1.0.

voronoiPolygons(): Tiles, Triangles and PolygonsUpdated 3 years ago

lindbrook

Rendered from tiles.polygons.Rmd in cholera 0.8.0.9486.

R Package deSolve: Solving Initial Value Differential Equations in RUpdated 3 years ago

Thomas Petzoldt

Rendered from deSolve.Rnw in deSolve 1.40.

R Package deSolve: Writing Code in Compiled LanguagesUpdated 3 years ago

Thomas Petzoldt

Rendered from compiledCode.Rnw in deSolve 1.40.

Using EpiCurveUpdated 3 years ago

[email protected]

Rendered from EpiCurve.Rmd in EpiCurve 2.4-2.

Introduction to the covid19italy DatasetsUpdated 3 years ago

Rami Krispin

Rendered from intro.Rmd in covid19italy 0.3.1.

Visualising multi-state models using mstateUpdated 3 years ago

Edouard F. Bonneville

Rendered from visuals_demo.Rmd in mstate 0.3.3.

Probabilistic Sensitivity AnalysisUpdated 3 years ago

Denis Haine

Rendered from b_probabilistic.Rmd in episensr 1.3.0.

ParallelizationUpdated 4 years ago

lindbrook

Rendered from parallelization.Rmd in cholera 0.8.0.9486.

Estimating incidence from cross-sectional dataUpdated 4 years ago

Eduard Grebe

Rendered from EstimatingIncidence.Rmd in inctools 1.0.9006.

Overview of Incidence Estimation Package inctoolsUpdated 4 years ago

Eduard Grebe

Rendered from Introduction.Rmd in inctools 1.0.9006.

Survey design: power, precision and sample sizeUpdated 4 years ago

Eduard Grebe

Rendered from SurveyDesign.Rmd in inctools 1.0.9006.

Recent infection test calibrationUpdated 4 years ago

Eduard Grebe

Rendered from TestCalibration.Rmd in inctools 1.0.9006.

Covid19 Italy DashboardUpdated 4 years ago

Rami Krispin

Rendered from dashboard.Rmd in covid19italy 0.3.1.

The 'Epidemiological Report' PackageUpdated 4 years ago

European Centre for Disease Prevention and Control (ECDC)

Rendered from EpiReport_Vignette.Rmd in EpiReport 1.0.1.

Introduction to outbreaker2Updated 4 years ago

Thibaut Jombart

Rendered from introduction.Rmd in outbreaker2 1.1.3.

outbreaker2: package overviewUpdated 4 years ago

Thibaut Jombart

Rendered from overview.Rmd in outbreaker2 1.1.3.

outbreaker2: Rcpp APIUpdated 4 years ago

Thibaut Jombart

Rendered from Rcpp_API.Rmd in outbreaker2 1.1.3.

Conversions to and from the incidence classUpdated 4 years ago

Thibaut Jombart, Zhian N. Kamvar

Rendered from conversions.Rmd in incidence 1.7.5.

Details of the incidence classUpdated 4 years ago

Thibaut Jombart, Zhian N. Kamvar

Rendered from incidence_class.Rmd in incidence 1.7.5.

Early investigation of infectiousness using earlyRUpdated 4 years ago

Thibaut Jombart

Rendered from earlyR.Rmd in earlyR 0.0.5.

Posterior Predictive Forecasting and Model AssessmentUpdated 4 years ago

Waleed Almutiry

Rendered from Predict.Rnw in EpiILM 1.5.2.

Covid19 SF Data RefreshUpdated 4 years ago

Rami Krispin

Rendered from data_refresh.Rmd in covid19sf 0.1.2.

Introduction to the covid19swiss DatasetUpdated 4 years ago

Rami Krispin

Rendered from intro_covid19swiss.Rmd in covid19swiss 0.1.0.

Computing Cumulative Incidence Functions with the etmCIF FunctionUpdated 4 years ago

Arthur Allignol

Rendered from etmCIF_tutorial.Rnw in etm 1.1.2.

CovidMutations: a feasible framework for mutation analysis and assays validation of COVID-19Updated 4 years ago

Shaoqian Ma, Yongyou Zhang

Rendered from vignette.Rmd in CovidMutations 0.1.3.

o2geosocialUpdated 4 years ago

Alexis Robert, Adam Kucharski, Sebastian Funk

Rendered from o2geosocial.Rmd in o2geosocial 1.1.3.

Updating the covid19swiss DatasetUpdated 4 years ago

Rami Krispin

Rendered from update_the_data.Rmd in covid19swiss 0.1.0.

covid19dbcandUpdated 4 years ago

Mohammed Ali

Rendered from covid19dbcand.Rmd in covid19dbcand 0.1.1.

Introductory tutorial for R Package nbTransmissionUpdated 4 years ago

Sarah V. Leavitt

Rendered from nbTransmission-vignette.Rmd in nbTransmission 1.1.4.

Simulation of outbreak dataUpdated 4 years ago

Xavier Didelot

Rendered from simulate.rmd in TransPhylo 1.4.10.

Introducing the R package TransPhyloUpdated 4 years ago

Xavier Didelot

Rendered from TransPhylo.Rmd in TransPhylo 1.4.10.

Simultaneous Inference of Multiple Transmission TreesUpdated 4 years ago

Yuanwei Xu

Rendered from multitree.Rmd in TransPhylo 1.4.10.

Spread of a pathogen in a homogeneous populationUpdated 5 years ago

Sebastian Lequime

Rendered from none.Rmd in nosoi 1.1.2.

covid19.analytics Package: get access to and analyze the live worldwide data from the novel CoViD19 from JHU repositoryUpdated 5 years ago

Marcelo Ponce

Rendered from covid19.analytics.Rmd in covid19.analytics 2.1.3.

shinySIR: Interactive plotting for infectious disease modelsUpdated 5 years ago

Sinead E. Morris

Rendered from Vignette.Rmd in shinySIR 0.1.3.

Introduction to epikitUpdated 5 years ago

Alexander Spina

Rendered from intro.Rmd in epikit 0.1.4.

Examples of using survtabUpdated 5 years ago

Joonas Miettinen

Rendered from survtab_examples.Rmd in popEpi 0.4.12.

Time SeriesUpdated 6 years ago

lindbrook

Rendered from time.series.Rmd in cholera 0.8.0.9486.

Details of the incidence_fit classUpdated 6 years ago

Zhian N. Kamvar

Rendered from incidence_fit_class.Rmd in incidence 1.7.5.

The 'Epidemiological Signal Detection' PackageUpdated 6 years ago

European Centre for Disease Prevention and Control (ECDC)

Rendered from EpiSignalDetection_Vignette.Rmd in EpiSignalDetection 0.1.1.

00 epiflows: package overviewUpdated 6 years ago

Pawel Piatkowski

Rendered from introduction.Rmd in epiflows 0.2.1.

01 Data PreparationUpdated 6 years ago

Pawel Piatkowski

Rendered from epiflows-class.Rmd in epiflows 0.2.1.

User GuideUpdated 6 years ago

Stuart Lacy

Rendered from user_guide.Rmd in epitab 0.2.2.

Analyzing plant disease epidemics with the R package epiphyUpdated 7 years ago

Christophe Gigot

Rendered from epiphy.Rmd in epiphy 0.5.0.9000.

Definitions and relationships between parametersUpdated 7 years ago

Christophe Gigot

Rendered from defs-and-eqns.Rmd in epiphy 0.5.0.9000.

epicontacts Class: Details Regarding the Data Structure for epicontacts ObjectsUpdated 7 years ago

VP Nagraj

Rendered from epicontacts_class.Rmd in epicontacts 1.1.4.

epicontacts: Manipulation, Visualisation and Analysis of Epidemiological Contact DataUpdated 8 years ago

Finlay Campbell

Rendered from epicontacts.Rmd in epicontacts 1.1.4.