- adegenet::H3N2Seasonal influenza (H3N2) HA segment data
- adegenet::dapcIllusSimulated data illustrating the DAPC
- adegenet::eHGDPExtended HGDP-CEPH dataset
- adegenet::hybridtoyToy hybrid dataset
- adegenet::microbovMicrosatellites genotypes of 15 cattle breeds
- adegenet::nancycatsMicrosatellites genotypes of 237 cats from 17 colonies of Nancy (France)
- adegenet::rupicaMicrosatellites genotypes of 335 chamois (Rupicapra rupicapra) from the Bauges mountains (France)
- adegenet::sim2popSimulated genotypes of two georeferenced populations
- adegenet::spcaIllusSimulated data illustrating the sPCA
- adegenet::swallowtailsMicrosatellites genotypes of 781 swallowtail butterflies from 40 populations in Alberta and British Columbia, Canada
- AMR::WHONETData Set with 500 Isolates - WHONET Example
- AMR::antibioticsData Sets with 607 Antimicrobial Drugs
- AMR::antiviralsData Sets with 607 Antimicrobial Drugs
- AMR::clinical_breakpointsData Set with Clinical Breakpoints for SIR Interpretation
- AMR::dosageData Set with Treatment Dosages as Defined by EUCAST
- AMR::example_isolatesData Set with 2 000 Example Isolates
- AMR::example_isolates_uncleanData Set with Unclean Data
- AMR::intrinsic_resistantData Set with Bacterial Intrinsic Resistance
- AMR::microorganismsData Set with 78 678 Taxonomic Records of Microorganisms
- AMR::microorganisms.codesData Set with 4 971 Common Microorganism Codes
- AMR::microorganisms.groupsData Set with 521 Microorganisms In Species Groups
- authoritative::cran_epidemiology_packagesA data.frame of historical metadata from CRAN packages epidemiology.
- bets.covid19::covid19_dataConfirmed cases of COVID-19
- bets.covid19::wuhan_exportedCOVID-19 exported from Wuhan
- cfr::covid_dataDaily Covid-19 case and death data for countries with 100,000 or more deaths
- cfr::ebola1976Ebola 1976 outbreak case data
- cholera::anchor.caseAnchor or base case of each stack of fatalities.
- cholera::borderNumeric IDs of line segments that create the map's border frame.
- cholera::fatalitiesAmended Dodson and Tobler's cholera data.
- cholera::fatalities.address"Unstacked" amended cholera data with address as unit of observation.
- cholera::fatalities.unstacked"Unstacked" amended cholera fatalities data with fatality as unit of observation.
- cholera::frame.dataMap frame data c("x", "y") and c("lon", "lat").
- cholera::frame.samplePartitioned map frame points (segment endpoints).
- cholera::landmark.squaresCenters of city squares.
- cholera::landmarksLandmark coordinates.
- cholera::latlong.ortho.addrOrthogonal projection of observed address (latlong) cases onto road network.
- cholera::latlong.ortho.pumpOrthogonal projection of 13 original pumps (latlong).
- cholera::latlong.ortho.pump.vestryOrthogonal projection of the 14 pumps from the Vestry Report (latlong).
- cholera::latlong.regular.cases"Expected" cases (latlong).
- cholera::latlong.sim.ortho.projRoad "address" of simulated (i.e., "expected") cases (latlong).
- cholera::meter.to.yardMeter to yard conversion factor.
- cholera::ortho.projOrthogonal projection of observed cases onto road network.
- cholera::ortho.proj.pumpOrthogonal projection of 13 original pumps.
- cholera::ortho.proj.pump.vestryOrthogonal projection of the 14 pumps from the Vestry Report.
- cholera::oxford.weatherOxford monthly weather data, January 1853 - February 2024.
- cholera::plague.pitPlague pit coordinates.
- cholera::pumpsDodson and Tobler's pump data with street name.
- cholera::pumps.vestryVestry report pump data.
- cholera::rd.sampleSample of road intersections (segment endpoints).
- cholera::rectangle.filterRectangular filter data.
- cholera::regular.cases"Expected" cases.
- cholera::road.segmentsDodson and Tobler's street data transformed into road segments.
- cholera::roadsDodson and Tobler's street data with appended road names.
- cholera::sim.ortho.projRoad "address" of simulated (i.e., "expected") cases.
- cholera::sim.pump.caseList of "simulated" fatalities grouped by walking-distance pump neighborhood.
- cholera::sim.walking.distanceWalking distance to Broad Street Pump (#7).
- cholera::snow.neighborhoodSnow neighborhood fatalities.
- cholera::voronoi.polygonsCoordinates of Voronoi polygon vertices for original map.
- cholera::voronoi.polygons.vestryCoordinates of Voronoi polygon vertices for Vestry Report map.
- cleanepi::common_na_stringsCommon strings representing missing values
- coarseDataTools::exp.win.lengthsExposure window lengths from an influenza outbreak at a NYC school
- coarseDataTools::fluA.inc.perCoarse incubation period data for influenza A
- coarseDataTools::nycH1N1Incubation period data from New York City Public Schools, 2009 H1N1 influenza outbreak
- coarseDataTools::simulated.outbreak.deathsSimulated case and death reports from a fictional outbreak
- colmozzie::colmozzieWeekly notified dengue cases in Sri Lanka
- corona::alloAllometric scaling data.
- corona::citymapCitymapper data.
- corona::cntryCountry data from Our World In Data.
- corona::djiaHistorical Dow Jones Industrial Average prices.
- corona::gtGoogle trends search for 'coronavirus'.
- corona::lifeThe game of life.
- corona::lockApproximate dates of full lockdown in various countries.
- corona::owidWide-ranging data from Our World In Data. I only use a tiny part.
- corona::stmfDeaths, by week, for various countries.
- corona::viennaSemmelweis' data on Deaths of parturients in Vienna
- coronavirus::coronavirusThe 2019 Novel Coronavirus COVID-19 (2019-nCoV) Dataset
- coronavirus::covid19_vaccineThe COVID-19 Worldwide Vaccine Dataset
- covid19br::election2018CitiesResults of the 2018 presidential election in Brazil by city.
- covid19br::election2018RegionsResults of the 2018 presidential election in Brazil by region.
- covid19br::election2018StatesResults of the 2018 presidential election in Brazil by state.
- covid19dbcand::AHFS_Codes_DrugThe American Hospital Formulary Service (AHFS) identifier for Drugs
- covid19dbcand::ATC_Codes_DrugDrug related ATC Codes
- covid19dbcand::Actions_Carrier_DrugDrug Carriers/ Enzymes/ Targets/ Transporters related Actions
- covid19dbcand::Actions_Enzyme_DrugDrug Carriers/ Enzymes/ Targets/ Transporters related Actions
- covid19dbcand::Actions_Target_DrugDrug Carriers/ Enzymes/ Targets/ Transporters related Actions
- covid19dbcand::Actions_Transporter_DrugDrug Carriers/ Enzymes/ Targets/ Transporters related Actions
- covid19dbcand::Affected_Organisms_DrugDrug related Affected Organisms
- covid19dbcand::Articles_Carrier_DrugDrugs/ Carriers/ Enzymes/ Targets/ Transporters related Articles
- covid19dbcand::Articles_DrugDrugs/ Carriers/ Enzymes/ Targets/ Transporters related Articles
- covid19dbcand::Articles_Enzyme_DrugDrugs/ Carriers/ Enzymes/ Targets/ Transporters related Articles
- covid19dbcand::Articles_Target_DrugDrugs/ Carriers/ Enzymes/ Targets/ Transporters related Articles
- covid19dbcand::Articles_Transporter_DrugDrugs/ Carriers/ Enzymes/ Targets/ Transporters related Articles
- covid19dbcand::AttachmentsDrugs/ Carriers/ Enzymes/ Targets/ Transporters Attachments
- covid19dbcand::Attachments_CarriersDrugs/ Carriers/ Enzymes/ Targets/ Transporters Attachments
- covid19dbcand::Attachments_EnzymesDrugs/ Carriers/ Enzymes/ Targets/ Transporters Attachments
- covid19dbcand::Attachments_TargetsDrugs/ Carriers/ Enzymes/ Targets/ Transporters Attachments
- covid19dbcand::Attachments_TransportersDrugs/ Carriers/ Enzymes/ Targets/ Transporters Attachments
- covid19dbcand::Books_DrugDrugs/ Carriers/ Enzymes/ Targets/ Transporters related Books
- covid19dbcand::Calculated_Properties_DrugDrug Calculated Properties
- covid19dbcand::Carriers_DrugCarriers/ Enzymes/ Targets/ Transporters
- covid19dbcand::Categories_DrugDrug Categories General categorizations of the drug
- covid19dbcand::Classifications_DrugDrug Classification
- covid19dbcand::Dosages_DrugDrug Dosages A list of the commercially available dosages of the drug.
- covid19dbcand::DrugsDrugs
- covid19dbcand::Drugs_Pathway_DrugPathway Drugs Pathway Drugs Each drug may have one or more pathway and vise versa
- covid19dbcand::Enzymes_DrugCarriers/ Enzymes/ Targets/ Transporters
- covid19dbcand::Enzymes_Pathway_DrugPathway Enzymes Enzymes involved in this pathway.
- covid19dbcand::Enzymes_Reactions_DrugDrug Reactions Enzymes Enzymes involved in metabolizing this drug.
- covid19dbcand::Experimental_Properties_DrugDrug Experimental Properties
- covid19dbcand::External_Identifiers_DrugExternal Identifiers for Drugs/ Carriers/ Enzymes/ Targets/ Transporters
- covid19dbcand::External_Identifiers_Polypeptide_Carrier_DrugExternal Identifiers for Drugs/ Carriers/ Enzymes/ Targets/ Transporters
- covid19dbcand::External_Identifiers_Polypeptide_Enzyme_DrugExternal Identifiers for Drugs/ Carriers/ Enzymes/ Targets/ Transporters
- covid19dbcand::External_Identifiers_Polypeptide_Target_DrugExternal Identifiers for Drugs/ Carriers/ Enzymes/ Targets/ Transporters
- covid19dbcand::External_Identifiers_Transporter_DrugExternal Identifiers for Drugs/ Carriers/ Enzymes/ Targets/ Transporters
- covid19dbcand::External_Links_DrugDrugs External Links.
- covid19dbcand::Food_Interactions_DrugDrug Food Interactions
- covid19dbcand::GO_Classifiers_Polypeptide_Carrier_DrugCarriers/ Enzymes/ Targets/ Transporters related Gene Ontology (GO)
- covid19dbcand::GO_Classifiers_Polypeptide_Target_DrugCarriers/ Enzymes/ Targets/ Transporters related Gene Ontology (GO)
- covid19dbcand::GO_Classifiers_Polypeptide_Transporter_DrugCarriers/ Enzymes/ Targets/ Transporters related Gene Ontology (GO)
- covid19dbcand::GO_Classifiers_Polypeptides_Enzyme_DrugCarriers/ Enzymes/ Targets/ Transporters related Gene Ontology (GO)
- covid19dbcand::Groups_DrugDrug Groups
- covid19dbcand::Interactions_Drug#' Drug Interactions
- covid19dbcand::International_Brands_DrugDrug International Brands
- covid19dbcand::Links_Carrier_DrugDrugs/ Carriers/ Enzymes/ Targets/ Transporters related Links
- covid19dbcand::Links_DrugDrugs/ Carriers/ Enzymes/ Targets/ Transporters related Links
- covid19dbcand::Links_Enzyme_DrugDrugs/ Carriers/ Enzymes/ Targets/ Transporters related Links
- covid19dbcand::Links_Target_DrugDrugs/ Carriers/ Enzymes/ Targets/ Transporters related Links
- covid19dbcand::Links_Transporter_DrugDrugs/ Carriers/ Enzymes/ Targets/ Transporters related Links
- covid19dbcand::Manufacturers_DrugDrug Manufacturers
- covid19dbcand::Mixtures_DrugDrug Mixture
- covid19dbcand::PDB_Entries_DrugDrug PDB Entries
- covid19dbcand::PFAMS_Polypeptid_Transporter_DrugPFAMs
- covid19dbcand::PFAMS_Polypeptide_Carrier_DrugPFAMs
- covid19dbcand::PFAMS_Polypeptide_Target_DrugPFAMs
- covid19dbcand::PFAMS_Polypeptides_Enzyme_DrugPFAMs
- covid19dbcand::Packagers_DrugDrug Packagers
- covid19dbcand::Patents_DrugDrug Patent
- covid19dbcand::Pathways_DrugDrug Pathways
- covid19dbcand::PharmacologyDrug Pharmacology
- covid19dbcand::Polypeptide_Target_DrugPolypeptide
- covid19dbcand::Polypeptides_Carrier_DrugPolypeptide
- covid19dbcand::Polypeptides_Enzyme_DrugPolypeptide
- covid19dbcand::Polypeptides_Transporter_DrugPolypeptide
- covid19dbcand::Prices_DrugDrug Prices
- covid19dbcand::Products_DrugDrug Products
- covid19dbcand::Reactions_DrugDrug Reactions
- covid19dbcand::SNP_Adverse_Drug_Reactions_DrugSNP Adverse Drug Reactions
- covid19dbcand::SNP_Effects_DrugDrug SNP Effects
- covid19dbcand::Salts_DrugDrug Salts
- covid19dbcand::Sequences_DrugDrug Sequences
- covid19dbcand::Synonyms_DrugDrugs Synonyms
- covid19dbcand::Synonyms_Polypeptide_Carrier_DrugPolypeptide Synonyms
- covid19dbcand::Synonyms_Polypeptide_Target_DrugPolypeptide Synonyms
- covid19dbcand::Synonyms_Polypeptide_Transporter_DrugPolypeptide Synonyms
- covid19dbcand::Synonyms_Polypeptides_Enzyme_DrugPolypeptide Synonyms
- covid19dbcand::Targets_DrugCarriers/ Enzymes/ Targets/ Transporters
- covid19dbcand::Textbooks_Carrier_DrugDrugs/ Carriers/ Enzymes/ Targets/ Transporters related Books
- covid19dbcand::Textbooks_Enzyme_DrugDrugs/ Carriers/ Enzymes/ Targets/ Transporters related Books
- covid19dbcand::Textbooks_Target_DrugDrugs/ Carriers/ Enzymes/ Targets/ Transporters related Books
- covid19dbcand::Textbooks_Transporter_DrugDrugs/ Carriers/ Enzymes/ Targets/ Transporters related Books
- covid19dbcand::Transporters_DrugCarriers/ Enzymes/ Targets/ Transporters
- covid19italy::italy_provinceThe 2019 Novel Coronavirus COVID-19 (2019-nCoV) Italy Provinces Outbreak Dataset
- covid19italy::italy_regionThe 2019 Novel Coronavirus COVID-19 (2019-nCoV) Italy Regions Outbreak Dataset
- covid19italy::italy_totalThe 2019 Novel Coronavirus COVID-19 (2019-nCoV) Italy Outbreak Dataset
- covid19sf::covid19sf_geoSan Francisco COVID-19 Cases and Deaths Summarized by Geography
- covid19sf::covid19sf_hospitalSan Francisco COVID-19 Hospital Capacity
- covid19sf::covid19sf_hospitalizationsSan Francisco COVID-19 Hospitalizations
- covid19sf::covid19sf_housingSan Francisco COVID-19 Alternative Housing Sites
- covid19sf::covid19sf_populationCOVID-19 Cases by Population Characteristics Over Time
- covid19sf::covid19sf_test_locSan Francisco COVID-19 Testing Locations
- covid19sf::covid19sf_testsSan Francisco COVID-19 Tests
- covid19sf::covid19sf_vaccine_demoCOVID-19 Vaccine Doses Given to San Franciscans by Demographics
- covid19sf::covid19sf_vaccine_demo_tsCOVID-19 Vaccine Doses Given to San Franciscans by Demographics Over Time
- covid19sf::covid19sf_vaccine_geoSan Francisco COVID-19 Vaccines Given to San Franciscans by Geography
- covid19swiss::covid19swissThe 2019 Novel Coronavirus COVID-19 (2019-nCoV) Switzerland Outbreak Dataset
- CovidMutations::assaysAssays for mutation detection using different primers and probes
- CovidMutations::chinalistA list of places in China
- CovidMutations::covid_annotMutation annotation results produced by "indelSNP" function
- CovidMutations::gene_position"GFF3" format gene position data for SARS-Cov-2
- CovidMutations::gff3"GFF3" format annotation data for SARS-Cov-2
- CovidMutations::nucmerMutation information derived from "nucmer" SNP analysis
- CovidMutations::nucmerrPreprocessed "nucmer.snpss" file using "nucmerRMD" function
- CovidMutations::refseqSARS-Cov-2 genomic reference sequence from NCBI
- denguedatahub::americas_annual_dataDengue and severe dengue cases and deaths for subregions of the Americas
- denguedatahub::cdc_casesby_weekAll dengue cases by week in US states and territories, 2010 - 2023
- denguedatahub::cdc_dengue_agesexAll dengue cases by age group and sex in US states and territories, 2010 - 2023
- denguedatahub::cdc_dengue_casesbyjurisdictionAll dengue cases by jurisdiction of residence in US states and territories, 2010 - 2023
- denguedatahub::cdc_dengue_countyyearAll dengue cases by county of residence in US states and territories, 2010 - 2023
- denguedatahub::cdc_local_dengue_casesLocally acquired dengue cases by year, 2010 - 2023
- denguedatahub::cdc_travel_associated_dengue_casesTravel associated dengue cases by year, 2010 - 2023
- denguedatahub::cdc_usa_dengue_infectionAnnual number of dengue fever infections in the USA
- denguedatahub::china_annual_dataDengue related data in China
- denguedatahub::india_annual_dataDENGUE/DHF situation in India since 2017
- denguedatahub::korea_dengueImported dengue cases in Korea
- denguedatahub::level_of_riskLevel of Dengue risk around the world
- denguedatahub::philippines_daily_dataDaily number of dengue fever infections in Philippines
- denguedatahub::singapore_weekly_dataWeekly number of dengue fever infections in Sri Lanka
- denguedatahub::sl_annualAnnual reported dengue cases in Sri Lanka
- denguedatahub::sl_dengue_serotypeIdentification of dengue serotypes circulating in Sri Lanka
- denguedatahub::sl_province_districtsProvinces and Districts of Sri Lanka
- denguedatahub::sl_sitesType and proportion of breeding habitats positive for Aedes aegypti mosquitoes, across provinces in Sri Lanka, 2017.
- denguedatahub::srilanka_weekly_dataWeekly number of dengue fever infections in Sri Lanka
- denguedatahub::taiwan_dengueIndigenous and imported dengue cases in Taiwan, 1987-2023.
- denguedatahub::world_annualAnnual number of dengue fever infections around the world
- deSolve::ccl4dataClosed Chamber Study of CCl4 Metabolism by Rats.
- diyar::OpesDatasets in 'diyar' package
- diyar::episode_unitsDatasets in 'diyar' package
- diyar::hospital_admissionsDatasets in 'diyar' package
- diyar::hourly_dataDatasets in 'diyar' package
- diyar::infectionsDatasets in 'diyar' package
- diyar::infections_2Datasets in 'diyar' package
- diyar::infections_3Datasets in 'diyar' package
- diyar::infections_4Datasets in 'diyar' package
- diyar::missing_staff_idDatasets in 'diyar' package
- diyar::overlap_methodsDatasets in 'diyar' package
- diyar::patient_listDatasets in 'diyar' package
- diyar::patient_list_2Datasets in 'diyar' package
- diyar::patient_recordsDatasets in 'diyar' package
- diyar::staff_recordsDatasets in 'diyar' package
- DSAIDE::flu1918data1918 Influenza mortality data
- DSAIDE::norodataCases of norovirus during an outbreak
- Epi::B.dkBirths in Denmark by year and month of birth and sex
- Epi::BrCaClinical status, relapse, metastasis and death in 2982 women with breast cancer.
- Epi::DMconvConversion to diabetes
- Epi::DMepiEpidemiological rates for diabetes in Denmark 1996-2015
- Epi::DMlateThe Danish National Diabetes Register.
- Epi::DMrandThe Danish National Diabetes Register.
- Epi::M.dkMortality in Denmark 1974 ff.
- Epi::N.dkPopulation size in Denmark
- Epi::S.typhSalmonella Typhimurium outbreak 1996 in Denmark.
- Epi::Y.dkPopulation risk time in Denmark
- Epi::bdendoA case-control study of endometrial cancer
- Epi::bdendo11A case-control study of endometrial cancer
- Epi::birthsBirths in a London Hospital
- Epi::blcaITBladder cancer mortality in Italian males
- Epi::brvBereavement in an elderly cohort
- Epi::dietDiet and heart data
- Epi::ewratesRates of lung and nasal cancer mortality, and total mortality.
- Epi::gmortDKPopulation mortality rates for Denmark in 5-years age groups.
- Epi::hivDKhivDK: seroconversion in a cohort of Danish men
- Epi::lepAn unmatched case-control study of leprosy incidence
- Epi::lungDKMale lung cancer incidence in Denmark
- Epi::mortDKPopulation mortality rates for Denmark in 1-year age-classes.
- Epi::nickelA Cohort of Nickel Smelters in South Wales
- Epi::occupA small occupational cohort
- Epi::prDiabetes prevance as of 2010-01-01 in Denmark
- Epi::st2albClinical trial: Steno2 baseline and follow-up.
- Epi::st2clinClinical trial: Steno2 baseline and follow-up.
- Epi::steno2Clinical trial: Steno2 baseline and follow-up.
- Epi::testisDKTestis cancer incidence in Denmark, 1943-1996
- Epi::thoroThorotrast Study
- epichains::covid19_saCOVID-19 Data Repository for South Africa
- epiCo::divipola_tabledivipola_table
- epiCo::epi_dataepi_data
- epiCo::isco88_tableisco88_table
- EpiContactTrace::transfersMovement Example Data
- epiDisplay::ANCdataDataset on effect of new antenatal care method on mortality
- epiDisplay::ANCtableDataset on effect of new ANC method on mortality (as a table)
- epiDisplay::AttitudesDataset from an attitude survey among hospital staff
- epiDisplay::BPDataset on blood pressure and determinants
- epiDisplay::BangDataset from 1988 Bangladesh Fertility Survey
- epiDisplay::CompaqDataset on cancer survival
- epiDisplay::DHF99Dataset for exercise on predictors for mosquito larva infestation
- epiDisplay::DecayDataset on tooth decay and mutan streptococci
- epiDisplay::EctopicDataset of a case-control study looking at history of abortion as a risk factor for ectopic pregnancy
- epiDisplay::FamilydataDataset of a hypothetical family
- epiDisplay::HW93Dataset from a study on hookworm prevalence and intensity in 1993
- epiDisplay::HakimiDataset on effect of training personnel on neonatal mortality
- epiDisplay::IudAdmitDataset admission of cases for IUD trials
- epiDisplay::IudDiscontinueDataset on discontinuation of the IUD trial cases
- epiDisplay::IudFollowupDataset followup cases of IUD trials
- epiDisplay::MarryageDataset on age at marriage
- epiDisplay::MontanaDataset on arsenic exposure and respiratory deaths
- epiDisplay::OswegoDataset from an outbreak of food poisoning in US
- epiDisplay::OutbreakDataset from an outbreak of food poisoning on a sportsday, Thailand 1990.
- epiDisplay::PlanningDataset for practicing cleaning, labelling and recoding
- epiDisplay::SO2Dataset on air pollution and deaths in UK
- epiDisplay::Sleep3Dataset on sleepiness in a workshop
- epiDisplay::SuwitHookworm infection and blood loss: SEAJTM 1970
- epiDisplay::TimingDataset on time going to bed, waking up and arrival at a workshop
- epiDisplay::VC1to1Datasets on a matched case-control study of esophageal cancer
- epiDisplay::VC1to6Datasets on a matched case-control study of esophageal cancer
- epiDisplay::VCTDataset on attitudes toward VCT
- epiDisplay::XeropDataset from an Indonesian study on vitamin A deficiency and risk of respiratory infection
- epidm::genus_gram_stainBacterial Genus Gram Stain Lookup Table
- epidm::group_ecds_discharge_destinationA&E attendance discharge destination
- epidm::group_inpatient_admission_methodInpatient admission methods
- epidm::group_inpatient_discharge_destinationInpatient discharge destination
- epidm::lab_dataSynthetic Lab Data for epidm
- epidm::respeciate_organismRespeciated organisms
- epidm::specimen_type_groupingSpecimen type grouping
- EpiEstim::Flu1918Data on the 1918 H1N1 influenza pandemic in Baltimore.
- EpiEstim::Flu2009Data on the 2009 H1N1 influenza pandemic in a school in Pennsylvania.
- EpiEstim::Measles1861Data on the 1861 measles epidemic in Hagelloch, Germany.
- EpiEstim::MockRotavirusMock data on a rotavirus epidemic.
- EpiEstim::SARS2003Data on the 2003 SARS epidemic in Hong Kong.
- EpiEstim::Smallpox1972Data on the 1972 smallpox epidemic in Kosovo
- EpiEstim::covid_deaths_2020_ukData on the 2020-2022 SARS-CoV-2 epidemic in the UK.
- EpiEstim::flu_2009_NYC_schoolData on the 2009 H1N1 influenza pandemic in a school in New York city
- EpiEstim::mers_2014_15Data on Middle East Respiratory Syndrome (MERS) in Saudi Arabia.
- epiflows::Brazil_epiflowsYellow Fever Data from Brazil; 2016-12 to 2017-05
- epiflows::YF_BrazilYellow Fever Data from Brazil; 2016-12 to 2017-05
- epiflows::YF_coordinatesYellow Fever Data from Brazil; 2016-12 to 2017-05
- epiflows::YF_flowsYellow Fever Data from Brazil; 2016-12 to 2017-05
- epiflows::YF_locationsYellow Fever Data from Brazil; 2016-12 to 2017-05
- EpiForsk::adls_timevarying_region_dataSimulated Time-Varying Residence Data
- EpiForsk::andh_forest_dataExample Data for Husby's Forest Plot Vignette
- epigrowthfit::covid19.ontarioCOVID-19 in Ontario, Canada
- EpiILM::tswvTomato Spotted Wilt Virus (TSWV) data
- EpiILMCT::NetworkDataSimulated epidemic data set from a network-based SIR ILM
- EpiILMCT::NetworkDataSINRSimulated epidemic data set from a network-based SINR ILM
- EpiILMCT::SpatialDataSimulated epidemic data set from a distance-based SIR ILM
- EpiILMCT::SpatialNetDataSimulated epidemic data set from a distance and network-based SIR ILM
- EpiILMCT::tswvTomato Spotted Wilt Virus data
- epimdr2::black
- epimdr2::burnett
- epimdr2::ccs
- epimdr2::chabaudi
- epimdr2::cholera
- epimdr2::cspring
- epimdr2::dalziel
- epimdr2::ebola
- epimdr2::euthamia
- epimdr2::ferrari
- epimdr2::filipendula
- epimdr2::fiv
- epimdr2::flu
- epimdr2::gonnet
- epimdr2::gypsymoth
- epimdr2::icelandflu
- epimdr2::litter
- epimdr2::m4494
- epimdr2::magono
- epimdr2::meas
- epimdr2::niamey
- epimdr2::niamey_daily
- epimdr2::pagiard
- epimdr2::paili
- epimdr2::palymes
- epimdr2::pameasle
- epimdr2::pdv
- epimdr2::pertcop
- epimdr2::peru
- epimdr2::polymod
- epimdr2::rabbit
- epimdr2::rabies
- epimdr2::silene
- epimdr2::tydiphtheria
- epimdr2::tymeasles
- epimdr2::tyscarlet
- epimdr2::tywhooping
- epimdr2::us
- epimdr2::usflu
- epimdr2::variants
- epimdr2::waller
- epinet::HagellochDyadCovHagelloch measles data.
- epinet::HagellochTimesHagelloch measles data.
- EpiNow2::example_confirmedExample Confirmed Case Data Set
- EpiNow2::example_generation_timeExample generation time
- EpiNow2::example_incubation_periodExample incubation period
- EpiNow2::example_reporting_delayExample reporting delay
- EpiNow2::example_truncatedExample Case Data Set with Truncation
- epiparameter::epireview_core_colsA vector of 'character' strings with the core column names of the epidemiological parameter data exported by the 'epireview' R package.
- epiparameterDB::epiparameterDBA list of epidemiological parameters.
- epiphy::aphidsCounts of aphids.
- epiphy::arthropodsCounts of arthropods.
- epiphy::citrus_ctvIncidence of citrus tristeza virus (CTV) disease in three fields.
- epiphy::codling_mothsCount of codling moth larvae.
- epiphy::dogwood_anthracnoseIncidence of dogwood anthracnose.
- epiphy::hop_virusesIncidence of three viruses in an Australian hop garden.
- epiphy::offspring_survivalOffspring survival of rats experiencing different diets.
- epiphy::onion_bacterial_blightIncidence of bacterial blight of onion.
- epiphy::pyrethrum_ray_blightIncidence of ray blight disease of pyrethrum.
- epiphy::simulated_epidemicsExamples of simulated epidemic data.
- epiphy::tobacco_virusesIncidence of tobacco plants infected with viruses.
- epiphy::tomato_tswvIncidence of tomato spotted wilt virus (TSWV) disease in field trials.
- epiR::epi.SClipLip cancer in Scotland 1975 - 1980
- epiR::epi.epiduralRates of use of epidural anaesthesia in trials of caregiver support
- epiR::epi.incinLaryngeal and lung cancer cases in Lancashire 1974 - 1983
- EpiReport::AERparamsDataset describing the parameters for the epidemiological report production
- EpiReport::DENGUE2019Dataset including Dengue data for 2015-2019
- EpiReport::MSCodeDataset correspondence table between country names and country code
- EpiReport::SALM2016Dataset including Salmonellosis data for 2012-2016
- EpiSignalDetection::AlgoParamList of datasets containing the Farrington Flexible and GLRNB default parameters by time unit
- EpiSignalDetection::SignalDataDataset for Signal Detection Analysis, reported cases, 1999-2018 (ECDC Atlas export)
- EpiStats::TiramisuA foodborne disease outbreak dataset
- epitools::oswegoOutbreak of Gastrointestinal Illness in Oswego County, 1940
- epitools::wcgsWestern Collaborative Group Study data
- epitools::wnvWest Nile Virus human cases reported in California, USA, as of December 14, 2004
- etm::abortionPregnancies exposed to coumarin derivatives
- etm::fourDPlacebo data from the 4D study
- etm::los.dataLength of hospital stay
- etm::sir.contVentilation status in intensive care unit patients
- excessmort::cdc_state_countsWeekly death counts for each USA state
- excessmort::cook_demographicsCook County Medical Examiner Records
- excessmort::cook_recordsCook County Medical Examiner Records
- excessmort::icdPuerto Rico daily mortality by cause of death
- excessmort::louisiana_countsLouisiana daily mortality
- excessmort::new_jersey_countsNew Jersey daily mortality
- excessmort::puerto_rico_countsPuerto Rico daily mortality
- excessmort::puerto_rico_icdPuerto Rico daily mortality by cause of death
- excessmort::world_countsWeekly death counts for several countries
- finalsize::polymod_ukExample POLYMOD social contact data for the U.K.
- hmsidwR::deaths2019Dataset: Health Metrics Data - Number of Deaths Due to 9 Causes in 2019
- hmsidwR::deaths9Health Metrics Data - Number of Deaths Due to 9 Causes in 6 Locations for the Years 2011 and 2021.
- hmsidwR::disweightsDataset: Health Metrics Data - Disability Weights and Severity in 2019 and 2021
- hmsidwR::g7_hmetricsDataset: Health Metrics Data - G7 Countries
- hmsidwR::germany_lungcDataset: Health Metrics Data - Germany lungcancer Deaths 2019
- hmsidwR::gho_le_haleDataset: Global Health Observatory (GHO) - Countries Life Expectancy and Healthy Life Expectancy(HALE) 2000-2019
- hmsidwR::gho_lifetablesDataset: Global Health Observatory (GHO) Life tables: WHO Global Life table values
- hmsidwR::idDALY_map_dataDataset: Health Metrics Data - Simple Feature Collection Average Disability-Adjusted Life Years (DALYs) per 100,000 population from 1990 to 2021
- hmsidwR::id_affected_countriesDataset: Health Metrics Data - Infectious Diseases 1980-2021
- hmsidwR::incprev_strokeGlobal Region Health Metrics Data - Incidence and Prevalence for Stroke 2019 and 2021 Numbers - 5-year age groups from <1 to 85+ and both Location available Global
- hmsidwR::infectious_diseasesDataset: Health Metrics Data - Infectious Diseases 1980-2021
- hmsidwR::rabiesDataset: Health Metrics Data - Rabies Deaths and DALYs from 1980 to 2021
- hmsidwR::sdi90_19Dataset: Health Metrics Data - Socio-Demographic Index (SDI) for 1990 and 2019
- hmsidwR::spatialdalys2021Health Metrics Data - Disability-Adjusted Life Years (DALYs) Estimations for 204 countries in 2021 with spatial information.
- incidence2::covidregionaldataUKRegional data for COVID-19 cases in the UK
- inctools::excalibdataThe dataset 'excalibdata.Rdata' contains example data from an evaluation of an assay measuring recency of infection. At an assay result of <10, the specimen is considered to be recently infected. It further contains viral load data, which is commonly used to reduce false recency. For example, when recency is defined as assay result <10 and viral load > 1000, the FRR is substantially lower (but the MDRI is also reduced).
- mem::flucylCastilla y Leon influenza crude rates
- mem::flucylrawCastilla y Leon influenza standarised rates
- memapp::flucylCastilla y Leon influenza crude rates
- memapp::flucylrawCastilla y Leon influenza standarised rates
- modelSSE::COVID19_JanApr2020_HongKongA dataset of COVID-19 outbreak in Hong Kong
- modelSSE::MERS_2013_MEregionA dataset of MERS outbreaks in the Middle East region
- modelSSE::mpox_19801984_DRCA dataset of mpox outbreaks in DRC
- modelSSE::smallpox_19581973_EuropeA dataset of smallpox outbreaks in Europe
- mstate::aidssiData from the Amsterdam Cohort Studies on HIV infection and AIDS
- mstate::aidssi2Data from the Amsterdam Cohort Studies on HIV infection and AIDS
- mstate::bmtBMT data from Klein and Moeschberger
- mstate::ebmt1Data from the European Society for Blood and Marrow Transplantation (EBMT)
- mstate::ebmt2Data from the European Society for Blood and Marrow Transplantation (EBMT)
- mstate::ebmt3Data from the European Society for Blood and Marrow Transplantation (EBMT)
- mstate::ebmt4Data from the European Society for Blood and Marrow Transplantation (EBMT)
- mstate::prothrAbnormal prothrombin levels in liver cirrhosis
- nbTransmission::indDataIndividual-level simulated outbreak dataset
- nbTransmission::nbResultsDataset with results of 'nbProbabilities'
- nbTransmission::pairDataPair-level simulated outbreak dataset
- o2geosocial::toy_outbreak_longSimulated outbreaks
- o2geosocial::toy_outbreak_shortSimulated outbreaks
- outbreaker2::fake_outbreakSmall simulated outbreak
- outbreaks::covid19_england_nhscalls_2020Potential COVID19 cases reported through NHS pathways
- outbreaks::dengue_fais_2011Dengue on the island of Fais, Micronesia, 2011
- outbreaks::dengue_yap_2011Dengue on the Yap Main Islands, Micronesia, 2011
- outbreaks::ebola_kikwit_1995Ebola in Kikwit, Democratic Republic of the Congo, 1995
- outbreaks::ebola_sierraleone_2014Ebola in Sierra Leone, 2014
- outbreaks::ebola_simSimulated Ebola outbreak
- outbreaks::ebola_sim_cleanSimulated Ebola outbreak
- outbreaks::fluH7N9_china_2013Influenza A H7N9 in China, 2013
- outbreaks::influenza_england_1978_schoolInfluenza in a boarding school in England, 1978
- outbreaks::measles_hagelloch_1861Measles in Hagelloch, Germany, 1861
- outbreaks::mers_korea_2015Middle East respiratory syndrome in South Korea, 2015
- outbreaks::nipah_malaysiaNipah in Malaysia and Sinagapore, 1997-1999
- outbreaks::norovirus_derbyshire_2001_schoolNorovirus in a primary school in Derbyshire, England, 2001
- outbreaks::rabies_car_2003Dog Rabies in Central African Republic, 2003-2012
- outbreaks::s_enteritidis_pt59Salmonella Enteritidis PT59 outbreak
- outbreaks::sars_canada_2003Severe Acute Respiratory Syndrome in Canada, 2003
- outbreaks::sarscov2_who_2019SARS-CoV-2 World Health Organization Situation Reports 2019 Outbreak (COVID-19)
- outbreaks::smallpox_abakaliki_1967Smallpox in Abakaliki, Nigeria, 1967
- outbreaks::varicella_sim_berlinSimulated Varicella outbreak
- outbreaks::zika_girardot_2015Zika in Girardot, Colombia, 2015
- outbreaks::zika_sanandres_2015Zika in San Andres, Colombia, 2015
- outbreaks::zika_yap_2007Zika on the Yap Main Islands, Micronesia, 2007
- pomp::LondonYorkeHistorical childhood disease incidence data
- pomp::blowfliesNicholson's blowflies.
- pomp::bsfluInfluenza outbreak in a boarding school
- pomp::ebolaWA2014Ebola outbreak, West Africa, 2014-2016
- pomp::ewcitmeasHistorical childhood disease incidence data
- pomp::ewmeasHistorical childhood disease incidence data
- pomp::parusParus major population dynamics
- popEpi::ICSSAge standardisation weights from the ICSS scheme.
- popEpi::meanpop_fiMean population counts in Finland year, sex, and age group.
- popEpi::popmortPopulation mortality rates in Finland 1951 - 2013 in 101 age groups and by gender. This is an example of a population hazard table as used in 'popEpi'; for the general help page, see [pophaz].
- popEpi::sibrsibr - a simulated cohort of Finnish female breast cancer patients
- popEpi::siresire - a simulated cohort of Finnish female rectal cancer patients
- popEpi::stdpop101World standard population by 1 year age groups from 1 to 101. Sums to 100 000.
- popEpi::stdpop18Standard populations from 2000: world, Europe and Nordic.
- powerSurvEpi::OphOphthalmology Data
- R0::GT.chld.hsld2009 A/H1N1 observed generation time distribution
- R0::Germany.1918Germany 1918 dataset
- R0::H1N1.serial.intervalH1N1 serial interval
- riskCommunicator::cvddA subset of the 'framingham' teaching data
- riskCommunicator::framinghamThe 'framingham' data set
- SimInf::events_SISe3Example data to initialize events for the 'SISe3' model
- SimInf::nodesExample data with spatial distribution of nodes
- SimInf::u0_SISe3Example data to initialize the 'SISe3' model
- sivirep::dengue2020Datos Dengue 2020 del SIVIGILA en sivirep
- sivirep::divipoladataCódigos e información geografica del DIVIPOLA en sivirep
- socialmixr::polymodSocial contact data from 8 European countries
- SpatialEpi::NYleukemiaUpstate New York Leukemia Data
- SpatialEpi::NYleukemia_sfUpstate New York Leukemia
- SpatialEpi::pennLCPennsylvania Lung Cancer
- SpatialEpi::pennLC_sfPennsylvania Lung Cancer
- SpatialEpi::scotlandLip Cancer in Scotland
- SpatialEpi::scotland_sfLip Cancer in Scotland
- surveillance::MMRcoverageDEMMR coverage levels in the 16 states of Germany
- surveillance::abattoirAbattoir Data
- surveillance::campyDECampylobacteriosis and Absolute Humidity in Germany 2002-2011
- surveillance::delevalSurgical Failures Data
- surveillance::fluBYBWInfluenza in Southern Germany
- surveillance::fooepidataToy Data for 'twinSIR'
- surveillance::h1_nrwrpRKI SurvStat Data
- surveillance::haHepatitis A in Berlin
- surveillance::ha.stsHepatitis A in Berlin
- surveillance::hagelloch1861 Measles Epidemic in the City of Hagelloch, Germany
- surveillance::hagelloch.df1861 Measles Epidemic in the City of Hagelloch, Germany
- surveillance::hepatitisAHepatitis A in Germany
- surveillance::husO104HospHospitalization date for HUS cases of the STEC outbreak in Germany, 2011
- surveillance::imdepiOccurrence of Invasive Meningococcal Disease in Germany
- surveillance::imdepifitExample 'twinstim' Fit for the 'imdepi' Data
- surveillance::influMenInfluenza and meningococcal infections in Germany, 2001-2006
- surveillance::k1RKI SurvStat Data
- surveillance::m1RKI SurvStat Data
- surveillance::m2RKI SurvStat Data
- surveillance::m3RKI SurvStat Data
- surveillance::m4RKI SurvStat Data
- surveillance::m5RKI SurvStat Data
- surveillance::measles.weserMeasles in the Weser-Ems region of Lower Saxony, Germany, 2001-2002
- surveillance::measlesDEMeasles in the 16 states of Germany
- surveillance::measlesWeserEmsMeasles in the Weser-Ems region of Lower Saxony, Germany, 2001-2002
- surveillance::meningo.ageMeningococcal infections in France 1985-1997
- surveillance::momoDanish 1994-2008 all-cause mortality data for eight age groups
- surveillance::n1RKI SurvStat Data
- surveillance::n2RKI SurvStat Data
- surveillance::q1_nrwhRKI SurvStat Data
- surveillance::q2RKI SurvStat Data
- surveillance::rotaBBRotavirus cases in Brandenburg, Germany, during 2002-2013 stratified by 5 age categories
- surveillance::s1RKI SurvStat Data
- surveillance::s2RKI SurvStat Data
- surveillance::s3RKI SurvStat Data
- surveillance::salmAllOnsetSalmonella cases in Germany 2001-2014 by data of symptoms onset
- surveillance::salmHospitalizedHospitalized Salmonella cases in Germany 2004-2014
- surveillance::salmNewportSalmonella Newport cases in Germany 2004-2013
- surveillance::salmonella.agonaSalmonella Agona cases in the UK 1990-1995
- surveillance::shadarSalmonella Hadar cases in Germany 2001-2006
- surveillance::stsNewportSalmonella Newport cases in Germany 2001-2015
- tsiR::twentymeasMeasles incidence data from 20 cities
- vaccineff::cohortdataCohort data on vaccineff
