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epiverse-connect
Packages JSON API
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Information about packages in this universe
All packages in 'epiverse-connect' (JSON format)
All packages 'epiverse-connect' (NDJSON stream)
adegenet
aedseo
AMR
apisensr
argo
ATQ
Bernadette
bets.covid19
cercospoRa
cfr
cholera
cleanepi
cmprsk
coarseDataTools
colmozzie
contactdata
corona
coronavirus
COVID19
covid19.analytics
covid19br
covid19dbcand
covid19france
covid19italy
covid19sf
covid19swiss
covid19us
CovidMutations
dataquieR
dbparser
dde
denguedatahub
deSolve
diyar
DSAIDE
earlyR
eesim
endtoend
Epi
epibasix
epicasting
epichains
epiCleanr
epiCo
epicontacts
EpiContactTrace
EpiCurve
epidatr
epiDisplay
epidm
EpiDynamics
EpiEstim
epifitter
epiflows
EpiForsk
epigrowthfit
EpiILM
EpiILMCT
EpiInvert
epikit
epimdr2
EpiModel
epinet
EpiNow2
epiparameter
epiparameterDB
epiphy
epiR
EpiReport
episensr
EpiSignalDetection
EpiStats
epitab
epitools
epitrix
epitweetr
epiworldR
epiworldRShiny
etm
EVI
excessmort
finalsize
genSEIR
ggsurveillance
hmsidwR
incidence
incidence2
inctools
linelist
linelistBayes
malariaAtlas
mem
memapp
modelSSE
mstate
nbTransmission
nhanesA
nosoi
o2geosocial
odin
outbreaker2
outbreaks
phylepic
pomp
popEpi
powerSurvEpi
R0
riskCommunicator
rplanes
RSurveillance
shinySIR
SimInf
sivirep
socialmixr
SpatialEpi
superspreading
surveillance
tidyrates
TransPhylo
trendeval
trending
tsiR
vaccineff
Export datasets
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Export datasets to various formats
adegenet::H3N2 (genind)
adegenet::dapcIllus (list)
adegenet::eHGDP (genind)
adegenet::hybridtoy (genind)
adegenet::microbov (genind)
adegenet::nancycats (genind)
adegenet::rupica (genind)
adegenet::sim2pop (genind)
adegenet::spcaIllus (list)
adegenet::swallowtails (genind)
AMR::WHONET (tbl_df)
AMR::antimicrobials (tbl_df)
AMR::antivirals (tbl_df)
AMR::clinical_breakpoints (tbl_df)
AMR::dosage (tbl_df)
AMR::example_isolates (tbl_df)
AMR::example_isolates_unclean (tbl_df)
AMR::intrinsic_resistant (tbl_df)
AMR::microorganisms (tbl_df)
AMR::microorganisms.codes (tbl_df)
AMR::microorganisms.groups (tbl_df)
bets.covid19::covid19_data (data.table)
bets.covid19::wuhan_exported (data.frame)
cercospoRa::weathr (data.table)
cfr::covid_data (data.frame)
cfr::ebola1976 (data.frame)
cholera::anchor.case (data.frame)
cholera::border (numeric)
cholera::fatalities (data.frame)
cholera::fatalities.address (data.frame)
cholera::fatalities.unstacked (data.frame)
cholera::frame.data (data.frame)
cholera::frame.sample (list)
cholera::frame.segments (data.frame)
cholera::landmark.squares (data.frame)
cholera::landmarks (data.frame)
cholera::latlong.ortho.addr (data.frame)
cholera::latlong.ortho.pump (data.frame)
cholera::latlong.ortho.pump.vestry (data.frame)
cholera::latlong.regular.cases (data.frame)
cholera::latlong.sim.ortho.proj (data.frame)
cholera::meter.to.yard (numeric)
cholera::ortho.proj (data.frame)
cholera::ortho.proj.pump (data.frame)
cholera::ortho.proj.pump.vestry (data.frame)
cholera::plague.pit (data.frame)
cholera::pumps (data.frame)
cholera::pumps.vestry (data.frame)
cholera::rd.sample (list)
cholera::rectangle.filter (data.frame)
cholera::regular.cases (data.frame)
cholera::road.segments (data.frame)
cholera::roads (data.frame)
cholera::sim.ortho.proj (data.frame)
cholera::sim.pump.case (list)
cholera::sim.walking.distance (data.frame)
cholera::snow.neighborhood (numeric)
cholera::voronoi.polygons (list)
cholera::voronoi.polygons.vestry (list)
cleanepi::common_na_strings (character)
coarseDataTools::exp.win.lengths (numeric)
coarseDataTools::fluA.inc.per (data.frame)
coarseDataTools::nycH1N1 (data.frame)
coarseDataTools::simulated.outbreak.deaths (matrix)
colmozzie::colmozzie (tbl_df)
corona::allo (data.frame)
corona::citymap (data.frame)
corona::cntry (data.frame)
corona::djia (data.frame)
corona::gt (data.frame)
corona::life (data.frame)
corona::lock (data.frame)
corona::owid (data.frame)
corona::stmf (data.frame)
corona::vienna (data.frame)
coronavirus::coronavirus (data.frame)
coronavirus::covid19_vaccine (data.frame)
covid19br::election2018Cities (tbl_df)
covid19br::election2018Regions (tbl_df)
covid19br::election2018States (grouped_df)
covid19dbcand::AHFS_Codes_Drug (spec_tbl_df)
covid19dbcand::ATC_Codes_Drug (spec_tbl_df)
covid19dbcand::Actions_Carrier_Drug (spec_tbl_df)
covid19dbcand::Actions_Enzyme_Drug (spec_tbl_df)
covid19dbcand::Actions_Target_Drug (spec_tbl_df)
covid19dbcand::Actions_Transporter_Drug (spec_tbl_df)
covid19dbcand::Affected_Organisms_Drug (spec_tbl_df)
covid19dbcand::Articles_Carrier_Drug (spec_tbl_df)
covid19dbcand::Articles_Drug (spec_tbl_df)
covid19dbcand::Articles_Enzyme_Drug (spec_tbl_df)
covid19dbcand::Articles_Target_Drug (spec_tbl_df)
covid19dbcand::Articles_Transporter_Drug (spec_tbl_df)
covid19dbcand::Attachments (spec_tbl_df)
covid19dbcand::Attachments_Carriers (spec_tbl_df)
covid19dbcand::Attachments_Enzymes (tbl_df)
covid19dbcand::Attachments_Targets (spec_tbl_df)
covid19dbcand::Attachments_Transporters (spec_tbl_df)
covid19dbcand::Books_Drug (spec_tbl_df)
covid19dbcand::Calculated_Properties_Drug (spec_tbl_df)
covid19dbcand::Carriers_Drug (spec_tbl_df)
covid19dbcand::Categories_Drug (spec_tbl_df)
covid19dbcand::Classifications_Drug (spec_tbl_df)
covid19dbcand::Dosages_Drug (spec_tbl_df)
covid19dbcand::Drugs (tbl_df)
covid19dbcand::Drugs_Pathway_Drug (spec_tbl_df)
covid19dbcand::Enzymes_Drug (spec_tbl_df)
covid19dbcand::Enzymes_Pathway_Drug (spec_tbl_df)
covid19dbcand::Enzymes_Reactions_Drug (spec_tbl_df)
covid19dbcand::Experimental_Properties_Drug (spec_tbl_df)
covid19dbcand::External_Identifiers_Drug (spec_tbl_df)
covid19dbcand::External_Identifiers_Polypeptide_Carrier_Drug (spec_tbl_df)
covid19dbcand::External_Identifiers_Polypeptide_Enzyme_Drug (spec_tbl_df)
covid19dbcand::External_Identifiers_Polypeptide_Target_Drug (spec_tbl_df)
covid19dbcand::External_Identifiers_Transporter_Drug (spec_tbl_df)
covid19dbcand::External_Links_Drug (spec_tbl_df)
covid19dbcand::Food_Interactions_Drug (spec_tbl_df)
covid19dbcand::GO_Classifiers_Polypeptide_Carrier_Drug (spec_tbl_df)
covid19dbcand::GO_Classifiers_Polypeptide_Target_Drug (spec_tbl_df)
covid19dbcand::GO_Classifiers_Polypeptide_Transporter_Drug (spec_tbl_df)
covid19dbcand::GO_Classifiers_Polypeptides_Enzyme_Drug (spec_tbl_df)
covid19dbcand::Groups_Drug (spec_tbl_df)
covid19dbcand::Interactions_Drug (spec_tbl_df)
covid19dbcand::International_Brands_Drug (spec_tbl_df)
covid19dbcand::Links_Carrier_Drug (spec_tbl_df)
covid19dbcand::Links_Drug (spec_tbl_df)
covid19dbcand::Links_Enzyme_Drug (tbl_df)
covid19dbcand::Links_Target_Drug (spec_tbl_df)
covid19dbcand::Links_Transporter_Drug (spec_tbl_df)
covid19dbcand::Manufacturers_Drug (spec_tbl_df)
covid19dbcand::Mixtures_Drug (spec_tbl_df)
covid19dbcand::PDB_Entries_Drug (spec_tbl_df)
covid19dbcand::PFAMS_Polypeptid_Transporter_Drug (spec_tbl_df)
covid19dbcand::PFAMS_Polypeptide_Carrier_Drug (spec_tbl_df)
covid19dbcand::PFAMS_Polypeptide_Target_Drug (spec_tbl_df)
covid19dbcand::PFAMS_Polypeptides_Enzyme_Drug (spec_tbl_df)
covid19dbcand::Packagers_Drug (spec_tbl_df)
covid19dbcand::Patents_Drug (spec_tbl_df)
covid19dbcand::Pathways_Drug (spec_tbl_df)
covid19dbcand::Pharmacology (tbl_df)
covid19dbcand::Polypeptide_Target_Drug (spec_tbl_df)
covid19dbcand::Polypeptides_Carrier_Drug (spec_tbl_df)
covid19dbcand::Polypeptides_Enzyme_Drug (spec_tbl_df)
covid19dbcand::Polypeptides_Transporter_Drug (spec_tbl_df)
covid19dbcand::Prices_Drug (spec_tbl_df)
covid19dbcand::Products_Drug (tbl_df)
covid19dbcand::Reactions_Drug (spec_tbl_df)
covid19dbcand::SNP_Adverse_Drug_Reactions_Drug (spec_tbl_df)
covid19dbcand::SNP_Effects_Drug (spec_tbl_df)
covid19dbcand::Salts_Drug (spec_tbl_df)
covid19dbcand::Sequences_Drug (spec_tbl_df)
covid19dbcand::Synonyms_Drug (spec_tbl_df)
covid19dbcand::Synonyms_Polypeptide_Carrier_Drug (spec_tbl_df)
covid19dbcand::Synonyms_Polypeptide_Target_Drug (spec_tbl_df)
covid19dbcand::Synonyms_Polypeptide_Transporter_Drug (spec_tbl_df)
covid19dbcand::Synonyms_Polypeptides_Enzyme_Drug (spec_tbl_df)
covid19dbcand::Targets_Drug (spec_tbl_df)
covid19dbcand::Textbooks_Carrier_Drug (spec_tbl_df)
covid19dbcand::Textbooks_Enzyme_Drug (spec_tbl_df)
covid19dbcand::Textbooks_Target_Drug (spec_tbl_df)
covid19dbcand::Textbooks_Transporter_Drug (spec_tbl_df)
covid19dbcand::Transporters_Drug (spec_tbl_df)
covid19italy::italy_province (tbl_df)
covid19italy::italy_region (data.frame)
covid19italy::italy_total (tbl_df)
covid19sf::covid19sf_geo (sf)
covid19sf::covid19sf_hospital (data.frame)
covid19sf::covid19sf_hospitalizations (data.frame)
covid19sf::covid19sf_housing (data.frame)
covid19sf::covid19sf_population (data.frame)
covid19sf::covid19sf_test_loc (sf)
covid19sf::covid19sf_tests (data.frame)
covid19sf::covid19sf_vaccine_demo (data.frame)
covid19sf::covid19sf_vaccine_demo_ts (data.frame)
covid19sf::covid19sf_vaccine_geo (sf)
covid19swiss::covid19swiss (data.frame)
CovidMutations::assays (data.frame)
CovidMutations::chinalist (data.frame)
CovidMutations::covid_annot (data.frame)
CovidMutations::gene_position (data.frame)
CovidMutations::gff3 (data.frame)
CovidMutations::nucmer (data.frame)
CovidMutations::nucmerr (data.frame)
CovidMutations::refseq (SeqFastadna)
denguedatahub::americas_annual_data (tbl_df)
denguedatahub::cdc_casesby_week (spec_tbl_df)
denguedatahub::cdc_dengue_agesex (spec_tbl_df)
denguedatahub::cdc_dengue_casesbyjurisdiction (spec_tbl_df)
denguedatahub::cdc_dengue_countyyear (spec_tbl_df)
denguedatahub::cdc_local_dengue_cases (spec_tbl_df)
denguedatahub::cdc_travel_associated_dengue_cases (spec_tbl_df)
denguedatahub::cdc_usa_dengue_infection (tbl_df)
denguedatahub::china_annual_data (spec_tbl_df)
denguedatahub::india_annual_data (tbl_df)
denguedatahub::korea_dengue (tbl_df)
denguedatahub::level_of_risk (tbl_df)
denguedatahub::philippines_daily_data (tbl_df)
denguedatahub::singapore_weekly_data (tbl_df)
denguedatahub::sl_annual (spec_tbl_df)
denguedatahub::sl_dengue_serotype (spec_tbl_df)
denguedatahub::sl_province_districts (tbl_df)
denguedatahub::sl_sites (spec_tbl_df)
denguedatahub::srilanka_weekly_data (tbl_df)
denguedatahub::taiwan_dengue (tbl_df)
denguedatahub::world_annual (data.frame)
deSolve::ccl4data (data.frame)
diyar::Opes (data.frame)
diyar::episode_units (list)
diyar::hospital_admissions (data.frame)
diyar::hourly_data (data.frame)
diyar::infections (data.frame)
diyar::infections_2 (data.frame)
diyar::infections_3 (data.frame)
diyar::infections_4 (data.frame)
diyar::missing_staff_id (data.frame)
diyar::overlap_methods (list)
diyar::patient_list (data.frame)
diyar::patient_list_2 (data.frame)
diyar::patient_records (data.frame)
diyar::staff_records (data.frame)
DSAIDE::flu1918data (tbl_df)
DSAIDE::norodata (data.frame)
Epi::B.dk (data.frame)
Epi::BrCa (data.frame)
Epi::DMconv (data.frame)
Epi::DMepi (data.frame)
Epi::DMlate (data.frame)
Epi::DMrand (data.frame)
Epi::M.dk (data.frame)
Epi::N.dk (data.frame)
Epi::S.typh (data.frame)
Epi::Y.dk (data.frame)
Epi::bdendo (data.frame)
Epi::bdendo11 (data.frame)
Epi::births (data.frame)
Epi::blcaIT (data.frame)
Epi::brv (data.frame)
Epi::diet (data.frame)
Epi::ewrates (data.frame)
Epi::gmortDK (data.frame)
Epi::hivDK (data.frame)
Epi::lep (data.frame)
Epi::lungDK (data.frame)
Epi::mortDK (data.frame)
Epi::nickel (data.frame)
Epi::occup (data.frame)
Epi::pr (data.frame)
Epi::st2alb (data.frame)
Epi::st2clin (data.frame)
Epi::steno2 (data.frame)
Epi::testisDK (data.frame)
Epi::thoro (data.frame)
epichains::covid19_sa (tbl_df)
epiCo::divipola_table (data.frame)
epiCo::epi_data (tbl_df)
epiCo::isco88_table (data.frame)
EpiContactTrace::transfers (data.frame)
epiDisplay::ANCdata (data.frame)
epiDisplay::ANCtable (data.frame)
epiDisplay::Attitudes (data.frame)
epiDisplay::BP (data.frame)
epiDisplay::Bang (data.frame)
epiDisplay::Compaq (data.frame)
epiDisplay::DHF99 (data.frame)
epiDisplay::Decay (data.frame)
epiDisplay::Ectopic (data.frame)
epiDisplay::Familydata (data.frame)
epiDisplay::HW93 (data.frame)
epiDisplay::Hakimi (data.frame)
epiDisplay::IudAdmit (data.frame)
epiDisplay::IudDiscontinue (data.frame)
epiDisplay::IudFollowup (data.frame)
epiDisplay::Marryage (data.frame)
epiDisplay::Montana (data.frame)
epiDisplay::Oswego (data.frame)
epiDisplay::Outbreak (data.frame)
epiDisplay::Planning (data.frame)
epiDisplay::SO2 (data.frame)
epiDisplay::Sleep3 (data.frame)
epiDisplay::Suwit (data.frame)
epiDisplay::Timing (data.frame)
epiDisplay::VC1to1 (data.frame)
epiDisplay::VC1to6 (data.frame)
epiDisplay::VCT (data.frame)
epiDisplay::Xerop (data.frame)
epidm::genus_gram_stain (data.frame)
epidm::group_ecds_discharge_destination (data.frame)
epidm::group_inpatient_admission_method (data.frame)
epidm::group_inpatient_discharge_destination (data.frame)
epidm::lab_data (data.frame)
epidm::respeciate_organism (data.frame)
epidm::specimen_type_grouping (data.frame)
EpiEstim::Flu1918 (list)
EpiEstim::Flu2009 (list)
EpiEstim::Measles1861 (list)
EpiEstim::MockRotavirus (list)
EpiEstim::SARS2003 (list)
EpiEstim::Smallpox1972 (list)
EpiEstim::covid_deaths_2020_uk (list)
EpiEstim::flu_2009_NYC_school (list)
EpiEstim::mers_2014_15 (list)
epifitter::PowderyMildew (data.frame)
epiflows::Brazil_epiflows (epiflows)
epiflows::YF_Brazil (list)
epiflows::YF_coordinates (data.frame)
epiflows::YF_flows (data.frame)
epiflows::YF_locations (data.frame)
EpiForsk::adls_timevarying_region_data (tbl_df)
EpiForsk::andh_forest_data (spec_tbl_df)
epigrowthfit::covid19.ontario (data.frame)
EpiILM::tswv (data.frame)
EpiILMCT::NetworkData (list)
EpiILMCT::NetworkDataSINR (list)
EpiILMCT::SpatialData (datagen)
EpiILMCT::SpatialNetData (list)
EpiILMCT::tswv (list)
EpiInvert::festives (data.frame)
EpiInvert::incidence (data.frame)
EpiInvert::incidence_weekly_aggregated (data.frame)
EpiInvert::owid (data.frame)
EpiInvert::restored_incidence_database (matrix)
EpiInvert::si_distr_data (numeric)
epimdr2::black (data.frame)
epimdr2::burnett (data.frame)
epimdr2::ccs (data.frame)
epimdr2::chabaudi (data.frame)
epimdr2::cholera (data.frame)
epimdr2::cspring (list)
epimdr2::dalziel (data.frame)
epimdr2::ebola (data.frame)
epimdr2::euthamia (data.frame)
epimdr2::ferrari (data.frame)
epimdr2::filipendula (data.frame)
epimdr2::fiv (data.frame)
epimdr2::flu (data.frame)
epimdr2::gonnet (matrix)
epimdr2::gypsymoth (list)
epimdr2::icelandflu (data.frame)
epimdr2::litter (data.frame)
epimdr2::m4494 (list)
epimdr2::magono (data.frame)
epimdr2::meas (data.frame)
epimdr2::niamey (data.frame)
epimdr2::niamey_daily (data.frame)
epimdr2::pagiard (data.frame)
epimdr2::paili (data.frame)
epimdr2::palymes (data.frame)
epimdr2::pameasle (data.frame)
epimdr2::pdv (list)
epimdr2::pertcop (data.frame)
epimdr2::peru (data.frame)
epimdr2::polymod (data.frame)
epimdr2::rabbit (data.frame)
epimdr2::rabies (data.frame)
epimdr2::silene (data.frame)
epimdr2::tydiphtheria (data.frame)
epimdr2::tymeasles (data.frame)
epimdr2::tyscarlet (data.frame)
epimdr2::tywhooping (data.frame)
epimdr2::us (data.frame)
epimdr2::usflu (data.frame)
epimdr2::variants (data.frame)
epimdr2::waller (data.frame)
epinet::HagellochDyadCov (matrix)
epinet::HagellochTimes (matrix)
EpiNow2::example_confirmed (data.table)
EpiNow2::example_generation_time (dist_spec)
EpiNow2::example_incubation_period (dist_spec)
EpiNow2::example_reporting_delay (dist_spec)
EpiNow2::example_truncated (list)
epiparameter::epireview_core_cols (character)
epiparameterDB::epiparameterDB (epiparameterDB)
epiphy::aphids (data.frame)
epiphy::arthropods (data.frame)
epiphy::citrus_ctv (list)
epiphy::codling_moths (data.frame)
epiphy::dogwood_anthracnose (data.frame)
epiphy::hop_viruses (list)
epiphy::offspring_survival (data.frame)
epiphy::onion_bacterial_blight (data.frame)
epiphy::pyrethrum_ray_blight (data.frame)
epiphy::simulated_epidemics (data.frame)
epiphy::tobacco_viruses (data.frame)
epiphy::tomato_tswv (list)
epiR::epi.SClip (data.frame)
epiR::epi.epidural (data.frame)
epiR::epi.incin (data.frame)
EpiReport::AERparams (data.frame)
EpiReport::DENGUE2019 (data.frame)
EpiReport::MSCode (data.frame)
EpiReport::SALM2016 (data.frame)
EpiSignalDetection::AlgoParam (list)
EpiSignalDetection::SignalData (data.frame)
EpiStats::Tiramisu (data.frame)
epitools::oswego (data.frame)
epitools::wcgs (data.frame)
epitools::wnv (data.frame)
etm::abortion (data.frame)
etm::fourD (data.frame)
etm::los.data (data.frame)
etm::sir.cont (data.frame)
EVI::Austria (tbl_df)
EVI::Italy (data.frame)
excessmort::cdc_state_counts (tbl_df)
excessmort::cook_demographics (tbl_df)
excessmort::cook_records (tbl_df)
excessmort::icd (spec_tbl_df)
excessmort::louisiana_counts (tbl_df)
excessmort::new_jersey_counts (tbl_df)
excessmort::puerto_rico_counts (data.table)
excessmort::puerto_rico_icd (tbl_df)
excessmort::world_counts (tbl_df)
finalsize::polymod_uk (list)
ggsurveillance::influenza_germany (tbl_df)
ggsurveillance::linelist_hospital_outbreak (tbl_df)
hmsidwR::deaths2019 (tbl_df)
hmsidwR::deaths9 (data.frame)
hmsidwR::disweights (tbl_df)
hmsidwR::g7_hmetrics (data.frame)
hmsidwR::germany_lungc (tbl_df)
hmsidwR::gho_le_hale (tbl_df)
hmsidwR::gho_lifetables (tbl_df)
hmsidwR::idDALY_map_data (sf)
hmsidwR::id_affected_countries (tbl_df)
hmsidwR::incprev_stroke (data.frame)
hmsidwR::infectious_diseases (spec_tbl_df)
hmsidwR::rabies (tbl_df)
hmsidwR::sdi90_19 (tbl_df)
hmsidwR::spatialdalys2021 (tbl_df)
incidence2::covidregionaldataUK (data.frame)
inctools::excalibdata (data.frame)
linelistBayes::out_list_demo (backnow)
linelistBayes::sample_cases (integer)
linelistBayes::sample_dates (Date)
linelistBayes::sample_location (character)
linelistBayes::sample_onset_dates (Date)
linelistBayes::sample_report_dates (Date)
mem::flucyl (data.frame)
mem::flucylraw (data.frame)
memapp::flucyl (data.frame)
memapp::flucylraw (data.frame)
modelSSE::COVID19_JanApr2020_HongKong (data.frame)
modelSSE::MERS_2013_MEregion (data.frame)
modelSSE::mpox_19801984_DRC (data.frame)
modelSSE::smallpox_19581973_Europe (data.frame)
mstate::aidssi (data.frame)
mstate::aidssi2 (data.frame)
mstate::bmt (data.frame)
mstate::ebmt1 (data.frame)
mstate::ebmt2 (data.frame)
mstate::ebmt3 (data.frame)
mstate::ebmt4 (data.frame)
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