This package is considered a duplicate. The official version of this package is found at:https://alexbhatt.r-universe.dev/epidm

Package: epidm 1.0.5

Alex Bhattacharya

epidm: UK Epidemiological Data Management

Contains utilities and functions for the cleaning, processing and management of patient level public health data for surveillance and analysis held by the UK Health Security Agency, UKHSA.

Authors:Alex Bhattacharya [aut, cre], Alice Graham [aut], Harshana Liyanage [aut]

epidm_1.0.5.tar.gz
epidm_1.0.5.zip(r-4.5)epidm_1.0.5.zip(r-4.4)epidm_1.0.5.zip(r-4.3)
epidm_1.0.5.tgz(r-4.4-any)epidm_1.0.5.tgz(r-4.3-any)
epidm_1.0.5.tar.gz(r-4.5-noble)epidm_1.0.5.tar.gz(r-4.4-noble)
epidm_1.0.5.tgz(r-4.4-emscripten)epidm_1.0.5.tgz(r-4.3-emscripten)
epidm.pdf |epidm.html✨
epidm/json (API)
NEWS

# Install 'epidm' in R:

install.packages('epidm', repos = c('https://epiverse-connect.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/alexbhatt/epidm/issues

Datasets:

genus_gram_stain - Bacterial Genus Gram Stain Lookup Table
group_ecds_discharge_destination - A&E attendance discharge destination
group_inpatient_admission_method - Inpatient admission methods
group_inpatient_discharge_destination - Inpatient discharge destination
lab_data - Synthetic Lab Data for epidm
respeciate_organism - Respeciated organisms
specimen_type_grouping - Specimen type grouping

On CRAN:

5.14 score 13 stars 245 downloads 13 exports 38 dependencies

Last updated 3 months agofrom:6fa12b907c. Checks:OK: 1 ERROR: 6. Indexed: no.

Target	Result	Date
Doc / Vignettes	OK	Oct 30 2024
R-4.5-win	ERROR	Oct 30 2024
R-4.5-linux	ERROR	Oct 30 2024
R-4.4-win	ERROR	Oct 30 2024
R-4.4-mac	ERROR	Oct 30 2024
R-4.3-win	ERROR	Oct 30 2024
R-4.3-mac	ERROR	Oct 30 2024

Exports:cip_spells csv_from_zip group_time inpatient_codes lookup_recode proxy_episode_dates respeciate_generic sql_clean sql_connect sql_read sql_write uk_patient_id valid_nhs

Dependencies:BH bit bit64 blob cli clipr cpp11 crayon data.table DBI fansi generics glue hms lifecycle lubridate magrittr odbc phonics pillar pkgconfig prettyunits progress purrr R6 Rcpp readr rlang stringi stringr tibble tidyselect timechange tzdb utf8 vctrs vroom withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Continuous Inpatient (CIP) Spells	cip_spells
Download a csv from a zip	csv_from_zip
Bacterial Genus Gram Stain Lookup Table	genus_gram_stain
A&E attendance discharge destination	group_ecds_discharge_destination
Inpatient admission methods	group_inpatient_admission_method
Inpatient discharge destination	group_inpatient_discharge_destination
Grouping of intervals or events in time together	group_time
Hospital IN/OUT dates	hospital_in_out_dates
Inpatient Codes cleanup	inpatient_codes
Synthetic Lab Data for epidm	lab_data
Lookup table switch handler	lookup_recode
HES/SUS Episode Date Cleaning	proxy_episode_dates
Respeciate unspecified samples	respeciate_generic
Respeciated organisms	respeciate_organism
Specimen type grouping	specimen_type_grouping
Clean and Read a SQL query	sql_clean
Connect to a SQL database	sql_connect
Read a table from a SQL database	sql_read
Write a table to a SQL database	sql_write
Patient ID record grouping	uk_patient_id
NHS Number Validity Check	valid_nhs