Package: epidm 1.0.5
epidm: UK Epidemiological Data Management
Contains utilities and functions for the cleaning, processing and management of patient level public health data for surveillance and analysis held by the UK Health Security Agency, UKHSA.
Authors:
epidm_1.0.5.tar.gz
epidm_1.0.5.zip(r-4.7-any)epidm_1.0.5.zip(r-4.6-any)epidm_1.0.5.zip(r-4.5-any)
epidm_1.0.5.tgz(r-4.6-any)epidm_1.0.5.tgz(r-4.5-any)
epidm_1.0.5.tar.gz(r-4.7-any)epidm_1.0.5.tar.gz(r-4.6-any)
epidm_1.0.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
epidm/json (API)
| # Install 'epidm' in R: |
| install.packages('epidm', repos = c('https://epiverse-connect.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/alexbhatt/epidm/issues
Pkgdown/docs site:https://alexbhatt.github.io
- genus_gram_stain - Bacterial Genus Gram Stain Lookup Table
- group_ecds_discharge_destination - A&E attendance discharge destination
- group_inpatient_admission_method - Inpatient admission methods
- group_inpatient_discharge_destination - Inpatient discharge destination
- lab_data - Synthetic Lab Data for epidm
- respeciate_organism - Respeciated organisms
- specimen_type_grouping - Specimen type grouping
Last updated from:6fa12b907c. Checks:7 ERROR, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | ERROR | 124 | ||
| source / vignettes | OK | 161 | ||
| linux-release | ERROR | 128 | ||
| macos-release | ERROR | 146 | ||
| macos-oldrel | ERROR | 103 | ||
| windows-devel | ERROR | 80 | ||
| windows-release | ERROR | 87 | ||
| windows-oldrel | ERROR | 83 | ||
| wasm-release | OK | 114 |
Exports:cip_spellscsv_from_zipgroup_timeinpatient_codeslookup_recodeproxy_episode_datesrespeciate_genericsql_cleansql_connectsql_readsql_writeuk_patient_idvalid_nhs
Dependencies:bitbit64blobclicliprcpp11crayondata.tableDBIgenericsgluehmslifecyclelubridatemagrittrodbcphonicspillarpkgconfigprettyunitsprogresspurrrR6Rcppreadrrlangstringistringrtibbletidyselecttimechangetzdbutf8vctrsvroomwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Continuous Inpatient (CIP) Spells | cip_spells |
| Download a csv from a zip | csv_from_zip |
| Bacterial Genus Gram Stain Lookup Table | genus_gram_stain |
| A&E attendance discharge destination | group_ecds_discharge_destination |
| Inpatient admission methods | group_inpatient_admission_method |
| Inpatient discharge destination | group_inpatient_discharge_destination |
| Grouping of intervals or events in time together | group_time |
| Hospital IN/OUT dates | hospital_in_out_dates |
| Inpatient Codes cleanup | inpatient_codes |
| Synthetic Lab Data for epidm | lab_data |
| Lookup table switch handler | lookup_recode |
| HES/SUS Episode Date Cleaning | proxy_episode_dates |
| Respeciate unspecified samples | respeciate_generic |
| Respeciated organisms | respeciate_organism |
| Specimen type grouping | specimen_type_grouping |
| Clean and Read a SQL query | sql_clean |
| Connect to a SQL database | sql_connect |
| Read a table from a SQL database | sql_read |
| Write a table to a SQL database | sql_write |
| Patient ID record grouping | uk_patient_id |
| NHS Number Validity Check | valid_nhs |