Package: genSEIR 0.1.0
genSEIR: Predict Epidemic Curves with Generalized SEIR Modeling
Performs generalized Susceptible-Exposed-Infected-Recovered (SEIR) modeling to predict epidemic curves. The method is described in Peng et al. (2020) <doi:10.1101/2020.02.16.20023465>.
Authors:
genSEIR_0.1.0.tar.gz
genSEIR_0.1.0.zip(r-4.7-any)genSEIR_0.1.0.zip(r-4.6-any)genSEIR_0.1.0.zip(r-4.5-any)
genSEIR_0.1.0.tgz(r-4.6-any)genSEIR_0.1.0.tgz(r-4.5-any)
genSEIR_0.1.0.tar.gz(r-4.7-any)genSEIR_0.1.0.tar.gz(r-4.6-any)
genSEIR_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
genSEIR/json (API)
| # Install 'genSEIR' in R: |
| install.packages('genSEIR', repos = c('https://epiverse-connect.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/selcukorkmaz/genseir/issues
covid-19forecastnonlinear-optimizationseir-model
Last updated from:223b430cbb. Checks:9 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 107 | ||
| source / vignettes | OK | 136 | ||
| linux-release | OK | 105 | ||
| macos-release | OK | 108 | ||
| macos-oldrel | OK | 74 | ||
| windows-devel | OK | 72 | ||
| windows-release | OK | 73 | ||
| windows-oldrel | OK | 91 | ||
| wasm-release | OK | 83 |
Exports:checkRatesfit_SEIQRDPgetDataCOVIDplotSEIQRDPSEIQRDP
Dependencies:clicpp11digestfarverggplot2gluegtableisobandlabelinglifecycleminpack.lmnlsrpracmaR6RColorBrewerrlangS7scalesvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Check Rates | checkRates |
| Fit SEIQRDP function | fit_SEIQRDP |
| Compute the matrix A | getA |
| Get COVID-19 Data | getDataCOVID |
| Estimate Death Rate | getKappaFun |
| Estimate Death Rate | getLambdaFun |
| Anonymous function approximating the death rate | kappaFun |
| Anonymous function approximating the recovery rate | lambdaFun |
| Model function | modelFun |
| Plots for Epidemic Curves | plotSEIQRDP |
| Runge-Kutta 4th Order Method to Solve Differential Equation | RK4 |
| Simulate generalized SEIR model | SEIQRDP |
| Fitted Results for SEIQRDP | SEIQRDP_for_fitting |