This package is considered a duplicate. The official version of this package is found at:https://epiforecasts.r-universe.dev/socialmixr

Package: socialmixr 0.4.0.9000

Sebastian Funk

socialmixr: Social Mixing Matrices for Infectious Disease Modelling

Provides methods for sampling contact matrices from diary data for use in infectious disease modelling, as discussed in Mossong et al. (2008) <doi:10.1371/journal.pmed.0050074>.

Authors:Sebastian Funk [aut, cre], Lander Willem [aut], Hugo Gruson [aut], Maria Bekker-Nielsen Dunbar [ctb], Carl A. B. Pearson [ctb], Sam Clifford [ctb], Christopher Jarvis [ctb], Alexis Robert [ctb], Niel Hens [ctb], Pietro Coletti [col, dtm]

socialmixr_0.4.0.9000.tar.gz
socialmixr_0.4.0.9000.zip(r-4.7-any)socialmixr_0.4.0.9000.zip(r-4.6-any)socialmixr_0.4.0.9000.zip(r-4.5-any)
socialmixr_0.4.0.9000.tgz(r-4.6-any)socialmixr_0.4.0.9000.tgz(r-4.5-any)
socialmixr_0.4.0.9000.tar.gz(r-4.7-any)socialmixr_0.4.0.9000.tar.gz(r-4.6-any)
socialmixr_0.4.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
socialmixr/json (API)

# Install 'socialmixr' in R:

install.packages('socialmixr', repos = c('https://epiverse-connect.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/epiforecasts/socialmixr/issues

Pkgdown/docs site:https://epiforecasts.io

Datasets:

polymod - Social contact data from 8 European countries

On CRAN:

9.64 score 44 stars 2 packages 418 scripts 1.0k downloads 6 mentions 17 exports 37 dependencies

Last updated from:db737fcab7. Checks:9 OK. Indexed: no.

Target	Result	Time
linux-devel	OK	150
source / vignettes	OK	211
linux-release	OK	158
macos-release	OK	118
macos-oldrel	OK	124
windows-devel	OK	102
windows-release	OK	119
windows-oldrel	OK	116
wasm-release	OK	132

Exports:as_contact_survey check clean contact_matrix download_survey get_citation get_survey limits_to_agegroups list_surveys load_survey matrix_plot pop_age reduce_agegroups survey survey_countries wpp_age wpp_countries

Dependencies:askpass backports cachem checkmate cli countrycode cpp11 curl data.table fastmap generics glue httr jsonlite lifecycle lubridate magrittr memoise mime oai openssl pillar pkgconfig plyr purrr R6 Rcpp rlang stringi stringr sys tibble timechange utf8 vctrs wpp2017 xml2

Introduction to socialmixr

Rendered fromsocialmixr.Rmdusingknitr::rmarkdown

Last update: 2024-10-18
Started: 2022-06-16

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Check contact survey data	as_contact_survey
Check contact survey data	check check.contact_survey
Clean contact survey data	clean clean.contact_survey
Generate a contact matrix from diary survey data	contact_matrix
Download a survey from its Zenodo repository	download_survey
Citation for a survey	get_citation
Get a survey, either from its Zenodo repository, a set of files, or a survey variable	get_survey
Checks if a character string is a DOI	is_doi
Convert lower age limits to age groups.	limits_to_agegroups
List all surveys available for download	list_surveys
Load a survey from local files	load_survey
Draws an image plot of a contact matrix with a legend strip and the numeric values in the cells.	matrix_plot
Social contact data from 8 European countries	polymod
Change age groups in population data	pop_age
Reduce the number of age groups given a broader set of limits	reduce_agegroups
Contact survey	survey
List all countries contained in a survey	survey_countries
Get age-specific population data according to the World Population Prospects 2017 edition	wpp_age
List all countries and regions for which socialmixr has population data	wpp_countries