Package: ATQ 0.2.3
Vinay Joshy
ATQ: Alert Time Quality - Evaluating Timely Epidemic Metrics
Provides tools for evaluating timely epidemic detection models within school absenteeism-based surveillance systems. Introduces the concept of alert time quality as an evaluation metric. Includes functions to simulate populations, epidemics, and alert metrics associated with epidemic spread using population census data. The methods are based on research published in Vanderkruk et al. (2023) <doi:10.1186/s12889-023-15747-z> and Ward et al. (2019) <doi:10.1186/s12889-019-7521-7>.
Authors:
ATQ_0.2.3.tar.gz
ATQ_0.2.3.zip(r-4.5)ATQ_0.2.3.zip(r-4.4)ATQ_0.2.3.zip(r-4.3)
ATQ_0.2.3.tgz(r-4.5-any)ATQ_0.2.3.tgz(r-4.4-any)ATQ_0.2.3.tgz(r-4.3-any)
ATQ_0.2.3.tar.gz(r-4.5-noble)ATQ_0.2.3.tar.gz(r-4.4-noble)
ATQ_0.2.3.tgz(r-4.4-emscripten)ATQ_0.2.3.tgz(r-4.3-emscripten)
ATQ.pdf |ATQ.html✨
ATQ/json (API)
NEWS
| # Install 'ATQ' in R: |
| install.packages('ATQ', repos = c('https://epiverse-connect.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/vjoshy/atq_surveillance_package/issues
Last updated 8 months agofrom:a68e218842. Checks:6 OK, 3 NOTE. Indexed: no.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 23 2025 |
| R-4.5-win | NOTE | Mar 23 2025 |
| R-4.5-mac | NOTE | Mar 23 2025 |
| R-4.5-linux | NOTE | Mar 23 2025 |
| R-4.4-win | OK | Mar 23 2025 |
| R-4.4-mac | OK | Mar 23 2025 |
| R-4.4-linux | OK | Mar 23 2025 |
| R-4.3-win | OK | Mar 23 2025 |
| R-4.3-mac | OK | Mar 23 2025 |
Exports:alarm_metricsalarm_plot_databest_modelcatchment_simcompile_epicreate_alarm_metrics_summaryelementary_popeval_metricsplot_single_epidemicsimulate_householdsssirsubpop_childrensubpop_noChildren
Dependencies:clicolorspacedplyrfansifarvergenericsggplot2gluegridExtragtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigpurrrR6RColorBrewerrlangscalestibbletidyselectutf8vctrsviridisLitewithrzoo
