This package is considered a duplicate. The official version of this package is found at:https://mclements.r-universe.dev/etm

Package: etm 1.1.2

Mark Clements

etm: Empirical Transition Matrix

The etm (empirical transition matrix) package permits to estimate the matrix of transition probabilities for any time-inhomogeneous multi-state model with finite state space using the Aalen-Johansen estimator. Functions for data preparation and for displaying are also included (Allignol et al., 2011 <doi:10.18637/jss.v038.i04>). Functionals of the Aalen-Johansen estimator, e.g., excess length-of-stay in an intermediate state, can also be computed (Allignol et al. 2011 <doi:10.1007/s00180-010-0200-x>).

Authors:Arthur Allignol [aut], Mark Clements [cre, aut]

etm_1.1.2.tar.gz
etm_1.1.2.zip(r-4.7-x86_64)etm_1.1.2.zip(r-4.7-arm64)etm_1.1.2.zip(r-4.6-x86_64)etm_1.1.2.zip(r-4.6-arm64)etm_1.1.2.zip(r-4.5-x86_64)
etm_1.1.2.tgz(r-4.6-x86_64)etm_1.1.2.tgz(r-4.6-arm64)etm_1.1.2.tgz(r-4.5-x86_64)etm_1.1.2.tgz(r-4.5-arm64)
etm_1.1.2.tar.gz(r-4.7-arm64)etm_1.1.2.tar.gz(r-4.7-x86_64)etm_1.1.2.tar.gz(r-4.6-arm64)etm_1.1.2.tar.gz(r-4.6-x86_64)
etm_1.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
etm/json (API)

# Install 'etm' in R:

install.packages('etm', repos = c('https://epiverse-connect.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mclements/etm/issues

Uses libs:

openblas– Optimized BLAS
c++– GNU Standard C++ Library v3

Datasets:

abortion - Pregnancies exposed to coumarin derivatives
fourD - Placebo data from the 4D study
los.data - Length of hospital stay
sir.cont - Ventilation status in intensive care unit patients

On CRAN:

openblas cpp

8.39 score 16 packages 125 scripts 8.2k downloads 17 mentions 12 exports 6 dependencies

Last updated from:f9ff9b4552. Checks:15 OK. Indexed: no.

Target	Result	Time
linux-devel-arm64	OK	171
linux-devel-x86_64	OK	198
source / vignettes	OK	227
linux-release-arm64	OK	173
linux-release-x86_64	OK	155
macos-release-arm64	OK	122
macos-release-x86_64	OK	353
macos-oldrel-arm64	OK	123
macos-oldrel-x86_64	OK	277
windows-devel-arm64	OK	272
windows-devel-x86_64	OK	193
windows-release-arm64	OK	227
windows-release-x86_64	OK	153
windows-oldrel-x86_64	OK	152
wasm-release	OK	104

Exports:clos closPseudo etm etmCIF etmprep prepare.los.data tra_comp tra_ill tra_ill_comp tra_surv trcov trprob

Dependencies:data.table lattice Matrix Rcpp RcppArmadillo survival

Computing Cumulative Incidence Functions with the etmCIF Function

Rendered frometmCIF_tutorial.Rnwusingutils::Sweave

Last update: 2020-09-02
Started: 2020-09-02

Help page	Topics
Pregnancies exposed to coumarin derivatives	abortion
Change in Length of Stay	clos clos.etm clos.msfit
Pseudo Value Regression for the Extra Length-of-Stay	closPseudo
Computation of the empirical transition matrix	etm etm.data.frame
Cumulative incidence functions of competing risks	etmCIF
Data transformation function for using etm	etmprep
Placebo data from the 4D study	fourD
Lines method for 'etm' objects	lines.etm
Length of hospital stay	los.data
Plot method for 'clos.etm' objects	plot.clos.etm
Plot method for an etm object	plot.etm
Plot cumulative incidence functions	plot.etmCIF
Prepare the data for clos	prepare.los.data
Print function for 'clos.etm' objects	print.clos.etm
Print method for object of class 'etm'	print.etm
Print function for 'cifETM' objects	print.etmCIF
Ventilation status in intensive care unit patients	sir.cont
Summary methods for an 'etm' object	print.summary.etm summary.etm
Summary function for cifETM	print.summary.etmCIF summary.etmCIF
Matrix of possible transitions	tra tra_comp tra_ill tra_ill_comp tra_surv
Function to extract transition probabilities and (co)variance	trcov trcov.etm trprob trprob.etm
xyplot method for object of class 'etm'	xyplot.etm

Package: etm 1.1.2

etm: Empirical Transition Matrix

Citation

Development and contributors

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)