Package: shinySIR 0.1.3

Sinead E. Morris

shinySIR: Interactive Plotting for Mathematical Models of Infectious Disease Spread

Provides interactive plotting for mathematical models of infectious disease spread. Users can choose from a variety of common built-in ordinary differential equation (ODE) models (such as the SIR, SIRS, and SIS models), or create their own. This latter flexibility allows 'shinySIR' to be applied to simple ODEs from any discipline. The package is a useful teaching tool as students can visualize how changing different parameters can impact model dynamics, with minimal knowledge of coding in R. The built-in models are inspired by those featured in Keeling and Rohani (2008) <doi:10.2307/j.ctvcm4gk0> and Bjornstad (2018) <doi:10.1007/978-3-319-97487-3>.

Authors:Sinead E. Morris [aut, cre], Ottar N. Bjornstad [ctb]

shinySIR_0.1.3.tar.gz
shinySIR_0.1.3.zip(r-4.5)shinySIR_0.1.3.zip(r-4.4)shinySIR_0.1.3.zip(r-4.3)
shinySIR_0.1.3.tgz(r-4.5-any)shinySIR_0.1.3.tgz(r-4.4-any)shinySIR_0.1.3.tgz(r-4.3-any)
shinySIR_0.1.3.tar.gz(r-4.5-noble)shinySIR_0.1.3.tar.gz(r-4.4-noble)
shinySIR_0.1.3.tgz(r-4.4-emscripten)shinySIR_0.1.3.tgz(r-4.3-emscripten)
shinySIR.pdf |shinySIR.html
shinySIR/json (API)
NEWS

# Install 'shinySIR' in R:
install.packages('shinySIR', repos = c('https://epiverse-connect.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sineadmorris/shinysir/issues

On CRAN:

Conda:

4.10 score 14 stars 18 scripts 245 downloads 6 exports 60 dependencies

Last updated 10 months agofrom:9054f0a29a. Checks:9 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKMar 08 2025
R-4.5-winOKMar 08 2025
R-4.5-macOKMar 08 2025
R-4.5-linuxOKMar 08 2025
R-4.4-winOKMar 08 2025
R-4.4-macOKMar 08 2025
R-4.4-linuxOKMar 08 2025
R-4.3-winOKMar 08 2025
R-4.3-macOKMar 08 2025

Exports:default_modelsget_nameget_paramsrun_shinyseir.appseirs.app

Dependencies:base64encbslibcachemclicolorspacecommonmarkcpp11crayondeSolvedigestdplyrfansifarverfastmapfontawesomefsgenericsggplot2gluegtablehtmltoolshttpuvisobandjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigpromisespurrrR6rappdirsRColorBrewerRcpprlangsassscalesshinysourcetoolsstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithrxtable

shinySIR: Interactive plotting for infectious disease models

Rendered fromVignette.Rmdusingknitr::rmarkdownon Mar 08 2025.

Last update: 2020-02-01
Started: 2019-11-26