Package: EpiILM 1.5.2
EpiILM: Spatial and Network Based Individual Level Models for Epidemics
Provides tools for simulating from discrete-time individual level models for infectious disease data analysis. This epidemic model class contains spatial and contact-network based models with two disease types: Susceptible-Infectious (SI) and Susceptible-Infectious-Removed (SIR).
Authors:
EpiILM_1.5.2.tar.gz
EpiILM_1.5.2.zip(r-4.5)EpiILM_1.5.2.zip(r-4.4)EpiILM_1.5.2.zip(r-4.3)
EpiILM_1.5.2.tgz(r-4.4-x86_64)EpiILM_1.5.2.tgz(r-4.4-arm64)EpiILM_1.5.2.tgz(r-4.3-x86_64)EpiILM_1.5.2.tgz(r-4.3-arm64)
EpiILM_1.5.2.tar.gz(r-4.5-noble)EpiILM_1.5.2.tar.gz(r-4.4-noble)
EpiILM_1.5.2.tgz(r-4.4-emscripten)
EpiILM.pdf |EpiILM.html✨
EpiILM/json (API)
# Install 'EpiILM' in R: |
install.packages('EpiILM', repos = c('https://epiverse-connect.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/waleedalmutiry/epiilm/issues
- tswv - Tomato Spotted Wilt Virus (TSWV) data
Last updated 4 years agofrom:a22caac0e2. Checks:OK: 7 NOTE: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 09 2024 |
R-4.5-win-x86_64 | NOTE | Nov 09 2024 |
R-4.5-linux-x86_64 | NOTE | Nov 09 2024 |
R-4.4-win-x86_64 | OK | Nov 09 2024 |
R-4.4-mac-x86_64 | OK | Nov 09 2024 |
R-4.4-mac-aarch64 | OK | Nov 09 2024 |
R-4.3-win-x86_64 | OK | Nov 09 2024 |
R-4.3-mac-x86_64 | OK | Nov 09 2024 |
R-4.3-mac-aarch64 | OK | Nov 09 2024 |
Exports:as.epidataepiBR0epidataepidicepilikeepimcmcpred.epi
Dependencies:adaptMCMCcodaLaplacesDemonlatticeMatrixramcmcRcppRcppArmadillo
Readme and manuals
Help Manual
Help page | Topics |
---|---|
'EpiILM': Spatial and Network Based Individual Level Models for Epidemics | EpiILM-package EpiILM |
Discrete Time level information of an Epidemic | as.epidata |
Basic reproduction number (R0) | epiBR0 |
Simulates epidemic for the specified model type and parameters | epidata |
Deviance Information Criterion (DIC) | epidic |
Calculates the log likelihood | epilike |
Monte Carlo Simulation | epimcmc |
S3 method to provide some graphics of epidemic. | plot.epidata |
Plot the output of 'epimcmc' object | plot.epimcmc |
S3 method to provide plots of posterior predictive check. | plot.pred.epi |
Posterior predictive check. | pred.epi |
Summary method for 'epimcmc' objects | summary.epimcmc |
Tomato Spotted Wilt Virus (TSWV) data | tswv |